Multiple sequence alignment - TraesCS3A01G448500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G448500 chr3A 100.000 2971 0 0 1 2971 688592995 688590025 0.000000e+00 5487.0
1 TraesCS3A01G448500 chr3A 96.296 54 2 0 1 54 559703643 559703696 4.080000e-14 89.8
2 TraesCS3A01G448500 chr3D 91.405 1559 72 28 774 2289 551346516 551344977 0.000000e+00 2080.0
3 TraesCS3A01G448500 chr3D 92.440 1217 62 22 779 1985 551430129 551431325 0.000000e+00 1711.0
4 TraesCS3A01G448500 chr3D 91.161 577 43 3 2398 2971 551433000 551433571 0.000000e+00 776.0
5 TraesCS3A01G448500 chr3D 93.160 307 20 1 1983 2289 551432586 551432891 1.620000e-122 449.0
6 TraesCS3A01G448500 chr3D 90.962 343 13 4 428 766 551429743 551430071 2.100000e-121 446.0
7 TraesCS3A01G448500 chr3D 90.572 297 24 3 2679 2971 551303587 551303291 9.980000e-105 390.0
8 TraesCS3A01G448500 chr3D 90.526 285 27 0 2386 2670 551344879 551344595 7.770000e-101 377.0
9 TraesCS3A01G448500 chr3D 98.214 112 2 0 655 766 551346700 551346589 2.340000e-46 196.0
10 TraesCS3A01G448500 chr3D 83.415 205 21 9 407 609 551350638 551350445 8.460000e-41 178.0
11 TraesCS3A01G448500 chr3D 92.920 113 7 1 2311 2423 551344991 551344880 2.370000e-36 163.0
12 TraesCS3A01G448500 chr3D 100.000 29 0 0 375 403 551350684 551350656 1.000000e-03 54.7
13 TraesCS3A01G448500 chr3B 89.508 1544 88 29 770 2289 731096032 731094539 0.000000e+00 1886.0
14 TraesCS3A01G448500 chr3B 91.081 583 48 3 2392 2971 731094436 731093855 0.000000e+00 785.0
15 TraesCS3A01G448500 chr3B 94.800 250 11 2 48 296 12175018 12174770 3.590000e-104 388.0
16 TraesCS3A01G448500 chr3B 97.391 115 3 0 652 766 731096203 731096089 2.340000e-46 196.0
17 TraesCS3A01G448500 chr3B 94.915 118 6 0 404 521 731097024 731096907 5.060000e-43 185.0
18 TraesCS3A01G448500 chr3B 93.636 110 5 2 2314 2423 731094550 731094443 2.370000e-36 163.0
19 TraesCS3A01G448500 chr3B 93.023 86 6 0 293 378 799710418 799710333 3.110000e-25 126.0
20 TraesCS3A01G448500 chr4A 84.858 1618 115 65 778 2289 595442657 595444250 0.000000e+00 1511.0
21 TraesCS3A01G448500 chr4A 79.079 239 20 13 404 612 595442161 595442399 1.440000e-28 137.0
22 TraesCS3A01G448500 chr4A 98.113 53 1 0 2 54 646108646 646108698 3.150000e-15 93.5
23 TraesCS3A01G448500 chr4D 88.794 1169 87 19 1146 2289 7873904 7872755 0.000000e+00 1393.0
24 TraesCS3A01G448500 chr4D 86.585 574 55 6 2400 2971 7872647 7872094 5.440000e-172 614.0
25 TraesCS3A01G448500 chr4D 90.244 123 9 3 638 758 7874502 7874381 1.100000e-34 158.0
26 TraesCS3A01G448500 chr4D 75.578 389 40 32 778 1136 7874319 7873956 1.110000e-29 141.0
27 TraesCS3A01G448500 chr4B 86.532 1188 104 22 1146 2289 14054840 14056015 0.000000e+00 1256.0
28 TraesCS3A01G448500 chr4B 88.047 343 32 3 2386 2728 14056111 14056444 5.970000e-107 398.0
29 TraesCS3A01G448500 chr4B 84.651 215 19 12 883 1094 14054549 14054752 5.020000e-48 202.0
30 TraesCS3A01G448500 chr4B 74.457 368 59 20 428 766 14053973 14054334 3.110000e-25 126.0
31 TraesCS3A01G448500 chr4B 98.148 54 1 0 1 54 226646559 226646612 8.770000e-16 95.3
32 TraesCS3A01G448500 chr7A 82.599 885 107 21 1144 1998 636629241 636630108 0.000000e+00 737.0
33 TraesCS3A01G448500 chr7A 82.948 821 94 21 1216 1998 635860618 635861430 0.000000e+00 699.0
34 TraesCS3A01G448500 chr7A 88.125 320 34 2 59 378 637058778 637059093 7.770000e-101 377.0
35 TraesCS3A01G448500 chr7A 95.402 87 4 0 293 379 511517082 511517168 3.990000e-29 139.0
36 TraesCS3A01G448500 chr7A 93.023 86 6 0 291 376 712155432 712155517 3.110000e-25 126.0
37 TraesCS3A01G448500 chr7A 96.296 54 2 0 1 54 653547166 653547113 4.080000e-14 89.8
38 TraesCS3A01G448500 chr7A 87.805 82 1 4 997 1069 635860348 635860429 1.470000e-13 87.9
39 TraesCS3A01G448500 chr7D 85.054 736 78 13 1285 1998 550553393 550554118 0.000000e+00 721.0
40 TraesCS3A01G448500 chr7D 83.375 806 94 22 1216 1998 550800723 550801511 0.000000e+00 710.0
41 TraesCS3A01G448500 chr7D 89.873 79 2 2 997 1069 550800459 550800537 2.440000e-16 97.1
42 TraesCS3A01G448500 chr7D 100.000 48 0 0 1 48 294050054 294050101 4.080000e-14 89.8
43 TraesCS3A01G448500 chr7D 87.805 82 1 4 997 1069 550643256 550643337 1.470000e-13 87.9
44 TraesCS3A01G448500 chr7B 81.285 887 114 23 1149 1998 595080750 595081621 0.000000e+00 671.0
45 TraesCS3A01G448500 chr7B 96.296 54 2 0 1 54 328056436 328056383 4.080000e-14 89.8
46 TraesCS3A01G448500 chr7B 87.805 82 1 6 997 1069 595307349 595307430 1.470000e-13 87.9
47 TraesCS3A01G448500 chr2D 88.554 332 32 2 50 376 298940025 298940355 5.970000e-107 398.0
48 TraesCS3A01G448500 chr5A 95.219 251 10 2 49 298 678227649 678227898 2.150000e-106 396.0
49 TraesCS3A01G448500 chr5A 88.685 327 31 5 51 376 280769376 280769697 7.720000e-106 394.0
50 TraesCS3A01G448500 chr5A 94.737 57 3 0 2 58 591530206 591530150 4.080000e-14 89.8
51 TraesCS3A01G448500 chr2A 94.862 253 10 3 45 295 84977521 84977772 2.780000e-105 392.0
52 TraesCS3A01G448500 chr2A 95.122 246 12 0 51 296 753568601 753568846 3.590000e-104 388.0
53 TraesCS3A01G448500 chr2B 93.725 255 14 2 39 293 13745801 13745549 6.010000e-102 381.0
54 TraesCS3A01G448500 chr2B 94.253 87 5 0 293 379 575937120 575937206 1.860000e-27 134.0
55 TraesCS3A01G448500 chr1B 92.308 273 13 7 41 307 152079876 152079606 6.010000e-102 381.0
56 TraesCS3A01G448500 chr6B 94.048 84 5 0 293 376 638497900 638497983 8.640000e-26 128.0
57 TraesCS3A01G448500 chr6B 92.045 88 7 0 291 378 87526442 87526529 1.120000e-24 124.0
58 TraesCS3A01G448500 chr1D 96.296 54 2 0 1 54 194200652 194200599 4.080000e-14 89.8
59 TraesCS3A01G448500 chr1D 96.296 54 2 0 1 54 281515114 281515061 4.080000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G448500 chr3A 688590025 688592995 2970 True 5487.000000 5487 100.000000 1 2971 1 chr3A.!!$R1 2970
1 TraesCS3A01G448500 chr3D 551429743 551433571 3828 False 845.500000 1711 91.930750 428 2971 4 chr3D.!!$F1 2543
2 TraesCS3A01G448500 chr3D 551344595 551350684 6089 True 508.116667 2080 92.746667 375 2670 6 chr3D.!!$R2 2295
3 TraesCS3A01G448500 chr3B 731093855 731097024 3169 True 643.000000 1886 93.306200 404 2971 5 chr3B.!!$R3 2567
4 TraesCS3A01G448500 chr4A 595442161 595444250 2089 False 824.000000 1511 81.968500 404 2289 2 chr4A.!!$F2 1885
5 TraesCS3A01G448500 chr4D 7872094 7874502 2408 True 576.500000 1393 85.300250 638 2971 4 chr4D.!!$R1 2333
6 TraesCS3A01G448500 chr4B 14053973 14056444 2471 False 495.500000 1256 83.421750 428 2728 4 chr4B.!!$F2 2300
7 TraesCS3A01G448500 chr7A 636629241 636630108 867 False 737.000000 737 82.599000 1144 1998 1 chr7A.!!$F2 854
8 TraesCS3A01G448500 chr7A 635860348 635861430 1082 False 393.450000 699 85.376500 997 1998 2 chr7A.!!$F5 1001
9 TraesCS3A01G448500 chr7D 550553393 550554118 725 False 721.000000 721 85.054000 1285 1998 1 chr7D.!!$F2 713
10 TraesCS3A01G448500 chr7D 550800459 550801511 1052 False 403.550000 710 86.624000 997 1998 2 chr7D.!!$F4 1001
11 TraesCS3A01G448500 chr7B 595080750 595081621 871 False 671.000000 671 81.285000 1149 1998 1 chr7B.!!$F1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.038709 TTTTTCTCCCGCCGCAATTG 60.039 50.000 0.00 0.0 0.00 2.32 F
278 279 1.070843 CGCGGACGCACTATATTTTGG 60.071 52.381 17.35 0.0 42.06 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 6269 1.676678 GCCACGTCTGAGCCTCCATA 61.677 60.0 0.00 0.00 0.00 2.74 R
2275 8298 0.385751 CGGGTGCGTAGATGTCATCT 59.614 55.0 19.12 19.12 43.33 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.667539 CTTCCCAAGACAAGATGAGTCTA 57.332 43.478 0.00 0.00 45.11 2.59
23 24 5.407407 TTCCCAAGACAAGATGAGTCTAC 57.593 43.478 0.00 0.00 45.11 2.59
24 25 4.416516 TCCCAAGACAAGATGAGTCTACA 58.583 43.478 0.00 0.00 45.11 2.74
25 26 4.838423 TCCCAAGACAAGATGAGTCTACAA 59.162 41.667 0.00 0.00 45.11 2.41
26 27 5.047021 TCCCAAGACAAGATGAGTCTACAAG 60.047 44.000 0.00 0.00 45.11 3.16
27 28 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
28 29 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
29 30 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
30 31 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
31 32 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
32 33 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
33 34 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
34 35 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
40 41 8.425577 TGAGTCTACAAGCTAATAAATGAAGC 57.574 34.615 0.00 0.00 36.48 3.86
41 42 7.495934 TGAGTCTACAAGCTAATAAATGAAGCC 59.504 37.037 0.00 0.00 36.92 4.35
42 43 7.338710 AGTCTACAAGCTAATAAATGAAGCCA 58.661 34.615 0.00 0.00 36.92 4.75
43 44 7.995488 AGTCTACAAGCTAATAAATGAAGCCAT 59.005 33.333 0.00 0.00 36.92 4.40
44 45 8.286097 GTCTACAAGCTAATAAATGAAGCCATC 58.714 37.037 0.00 0.00 36.92 3.51
45 46 8.213679 TCTACAAGCTAATAAATGAAGCCATCT 58.786 33.333 0.00 0.00 36.92 2.90
46 47 9.494271 CTACAAGCTAATAAATGAAGCCATCTA 57.506 33.333 0.00 0.00 36.92 1.98
47 48 8.930846 ACAAGCTAATAAATGAAGCCATCTAT 57.069 30.769 0.00 0.00 36.92 1.98
48 49 9.359653 ACAAGCTAATAAATGAAGCCATCTATT 57.640 29.630 0.00 0.00 36.92 1.73
57 58 7.821134 AATGAAGCCATCTATTATACTCCCT 57.179 36.000 0.00 0.00 31.40 4.20
58 59 6.859112 TGAAGCCATCTATTATACTCCCTC 57.141 41.667 0.00 0.00 0.00 4.30
59 60 5.721960 TGAAGCCATCTATTATACTCCCTCC 59.278 44.000 0.00 0.00 0.00 4.30
60 61 5.291100 AGCCATCTATTATACTCCCTCCA 57.709 43.478 0.00 0.00 0.00 3.86
61 62 5.859429 AGCCATCTATTATACTCCCTCCAT 58.141 41.667 0.00 0.00 0.00 3.41
62 63 6.275461 AGCCATCTATTATACTCCCTCCATT 58.725 40.000 0.00 0.00 0.00 3.16
63 64 6.385467 AGCCATCTATTATACTCCCTCCATTC 59.615 42.308 0.00 0.00 0.00 2.67
64 65 6.408662 GCCATCTATTATACTCCCTCCATTCC 60.409 46.154 0.00 0.00 0.00 3.01
65 66 6.673978 CCATCTATTATACTCCCTCCATTCCA 59.326 42.308 0.00 0.00 0.00 3.53
66 67 7.365117 CCATCTATTATACTCCCTCCATTCCAC 60.365 44.444 0.00 0.00 0.00 4.02
67 68 6.630131 TCTATTATACTCCCTCCATTCCACA 58.370 40.000 0.00 0.00 0.00 4.17
68 69 7.079700 TCTATTATACTCCCTCCATTCCACAA 58.920 38.462 0.00 0.00 0.00 3.33
69 70 6.786843 ATTATACTCCCTCCATTCCACAAT 57.213 37.500 0.00 0.00 0.00 2.71
70 71 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
71 72 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
72 73 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
73 74 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
74 75 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
75 76 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
76 77 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
77 78 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
78 79 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
79 80 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
80 81 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
81 82 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
82 83 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
83 84 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
84 85 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
85 86 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
86 87 5.189736 TCCACAATGTAGTGCTTCCTCTATT 59.810 40.000 0.00 0.00 38.18 1.73
87 88 5.525378 CCACAATGTAGTGCTTCCTCTATTC 59.475 44.000 0.00 0.00 38.18 1.75
88 89 6.108687 CACAATGTAGTGCTTCCTCTATTCA 58.891 40.000 0.00 0.00 32.04 2.57
89 90 6.036517 CACAATGTAGTGCTTCCTCTATTCAC 59.963 42.308 0.00 0.00 32.04 3.18
90 91 4.371855 TGTAGTGCTTCCTCTATTCACG 57.628 45.455 0.00 0.00 33.28 4.35
91 92 3.762288 TGTAGTGCTTCCTCTATTCACGT 59.238 43.478 0.00 0.00 33.28 4.49
92 93 3.238108 AGTGCTTCCTCTATTCACGTG 57.762 47.619 9.94 9.94 33.28 4.49
93 94 2.563179 AGTGCTTCCTCTATTCACGTGT 59.437 45.455 16.51 0.00 33.28 4.49
94 95 3.006967 AGTGCTTCCTCTATTCACGTGTT 59.993 43.478 16.51 7.21 33.28 3.32
95 96 3.746492 GTGCTTCCTCTATTCACGTGTTT 59.254 43.478 16.51 6.83 0.00 2.83
96 97 3.994392 TGCTTCCTCTATTCACGTGTTTC 59.006 43.478 16.51 0.00 0.00 2.78
97 98 3.994392 GCTTCCTCTATTCACGTGTTTCA 59.006 43.478 16.51 0.00 0.00 2.69
98 99 4.451096 GCTTCCTCTATTCACGTGTTTCAA 59.549 41.667 16.51 2.25 0.00 2.69
99 100 5.614887 GCTTCCTCTATTCACGTGTTTCAAC 60.615 44.000 16.51 0.00 0.00 3.18
100 101 5.209818 TCCTCTATTCACGTGTTTCAACT 57.790 39.130 16.51 0.00 0.00 3.16
101 102 5.607477 TCCTCTATTCACGTGTTTCAACTT 58.393 37.500 16.51 0.00 0.00 2.66
102 103 6.053005 TCCTCTATTCACGTGTTTCAACTTT 58.947 36.000 16.51 0.00 0.00 2.66
103 104 6.018262 TCCTCTATTCACGTGTTTCAACTTTG 60.018 38.462 16.51 0.00 0.00 2.77
104 105 6.018262 CCTCTATTCACGTGTTTCAACTTTGA 60.018 38.462 16.51 1.41 34.92 2.69
105 106 6.711579 TCTATTCACGTGTTTCAACTTTGAC 58.288 36.000 16.51 0.00 36.83 3.18
106 107 3.750639 TCACGTGTTTCAACTTTGACC 57.249 42.857 16.51 0.00 36.83 4.02
107 108 2.094575 TCACGTGTTTCAACTTTGACCG 59.905 45.455 16.51 0.00 36.83 4.79
108 109 2.078392 ACGTGTTTCAACTTTGACCGT 58.922 42.857 0.00 0.00 36.83 4.83
109 110 3.062369 CACGTGTTTCAACTTTGACCGTA 59.938 43.478 7.58 0.00 36.83 4.02
110 111 3.683822 ACGTGTTTCAACTTTGACCGTAA 59.316 39.130 0.00 0.00 36.83 3.18
111 112 4.153835 ACGTGTTTCAACTTTGACCGTAAA 59.846 37.500 0.00 0.00 36.83 2.01
112 113 5.163733 ACGTGTTTCAACTTTGACCGTAAAT 60.164 36.000 0.00 0.00 36.83 1.40
113 114 5.740099 CGTGTTTCAACTTTGACCGTAAATT 59.260 36.000 0.00 0.00 36.83 1.82
114 115 6.251801 CGTGTTTCAACTTTGACCGTAAATTT 59.748 34.615 0.00 0.00 36.83 1.82
115 116 7.428761 CGTGTTTCAACTTTGACCGTAAATTTA 59.571 33.333 0.00 0.00 36.83 1.40
116 117 9.074443 GTGTTTCAACTTTGACCGTAAATTTAA 57.926 29.630 0.00 0.00 36.83 1.52
117 118 9.074443 TGTTTCAACTTTGACCGTAAATTTAAC 57.926 29.630 0.00 0.00 36.83 2.01
118 119 9.292846 GTTTCAACTTTGACCGTAAATTTAACT 57.707 29.630 0.00 0.00 36.83 2.24
120 121 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
121 122 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
122 123 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
123 124 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
124 125 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
125 126 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
126 127 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
127 128 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
128 129 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
129 130 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
130 131 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
131 132 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
132 133 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
133 134 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
134 135 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
159 160 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
160 161 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
161 162 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
162 163 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
163 164 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
164 165 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
165 166 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
212 213 4.089105 TTTTTCTCCCGCCGCAAT 57.911 50.000 0.00 0.00 0.00 3.56
213 214 2.346597 TTTTTCTCCCGCCGCAATT 58.653 47.368 0.00 0.00 0.00 2.32
214 215 0.038709 TTTTTCTCCCGCCGCAATTG 60.039 50.000 0.00 0.00 0.00 2.32
215 216 1.872197 TTTTCTCCCGCCGCAATTGG 61.872 55.000 7.72 0.00 0.00 3.16
216 217 3.561120 TTCTCCCGCCGCAATTGGT 62.561 57.895 7.72 0.00 0.00 3.67
217 218 3.508840 CTCCCGCCGCAATTGGTC 61.509 66.667 7.72 0.00 0.00 4.02
218 219 3.976701 CTCCCGCCGCAATTGGTCT 62.977 63.158 7.72 0.00 0.00 3.85
219 220 3.508840 CCCGCCGCAATTGGTCTC 61.509 66.667 7.72 0.00 0.00 3.36
220 221 3.864686 CCGCCGCAATTGGTCTCG 61.865 66.667 7.72 1.81 0.00 4.04
221 222 3.118454 CGCCGCAATTGGTCTCGT 61.118 61.111 7.72 0.00 0.00 4.18
222 223 2.677003 CGCCGCAATTGGTCTCGTT 61.677 57.895 7.72 0.00 0.00 3.85
223 224 1.154225 GCCGCAATTGGTCTCGTTG 60.154 57.895 7.72 0.00 0.00 4.10
224 225 1.573829 GCCGCAATTGGTCTCGTTGA 61.574 55.000 7.72 0.00 0.00 3.18
225 226 1.086696 CCGCAATTGGTCTCGTTGAT 58.913 50.000 7.72 0.00 0.00 2.57
226 227 1.468520 CCGCAATTGGTCTCGTTGATT 59.531 47.619 7.72 0.00 0.00 2.57
227 228 2.675844 CCGCAATTGGTCTCGTTGATTA 59.324 45.455 7.72 0.00 0.00 1.75
228 229 3.126171 CCGCAATTGGTCTCGTTGATTAA 59.874 43.478 7.72 0.00 0.00 1.40
229 230 4.378978 CCGCAATTGGTCTCGTTGATTAAA 60.379 41.667 7.72 0.00 0.00 1.52
230 231 5.331902 CGCAATTGGTCTCGTTGATTAAAT 58.668 37.500 7.72 0.00 0.00 1.40
231 232 5.799936 CGCAATTGGTCTCGTTGATTAAATT 59.200 36.000 7.72 0.00 0.00 1.82
232 233 6.307800 CGCAATTGGTCTCGTTGATTAAATTT 59.692 34.615 7.72 0.00 0.00 1.82
233 234 7.483375 CGCAATTGGTCTCGTTGATTAAATTTA 59.517 33.333 7.72 0.00 0.00 1.40
234 235 9.301153 GCAATTGGTCTCGTTGATTAAATTTAT 57.699 29.630 7.72 0.00 0.00 1.40
236 237 9.801873 AATTGGTCTCGTTGATTAAATTTATGG 57.198 29.630 0.00 0.00 0.00 2.74
237 238 8.568676 TTGGTCTCGTTGATTAAATTTATGGA 57.431 30.769 0.00 0.00 0.00 3.41
238 239 8.746052 TGGTCTCGTTGATTAAATTTATGGAT 57.254 30.769 0.00 0.00 0.00 3.41
239 240 9.839817 TGGTCTCGTTGATTAAATTTATGGATA 57.160 29.630 0.00 0.00 0.00 2.59
252 253 7.568199 AATTTATGGATAAAGTTGGACCTCG 57.432 36.000 0.00 0.00 35.88 4.63
253 254 5.943349 TTATGGATAAAGTTGGACCTCGA 57.057 39.130 0.00 0.00 0.00 4.04
254 255 4.837093 ATGGATAAAGTTGGACCTCGAA 57.163 40.909 0.00 0.00 0.00 3.71
255 256 4.627284 TGGATAAAGTTGGACCTCGAAA 57.373 40.909 0.00 0.00 0.00 3.46
256 257 4.975631 TGGATAAAGTTGGACCTCGAAAA 58.024 39.130 0.00 0.00 0.00 2.29
257 258 5.001232 TGGATAAAGTTGGACCTCGAAAAG 58.999 41.667 0.00 0.00 0.00 2.27
258 259 4.142665 GGATAAAGTTGGACCTCGAAAAGC 60.143 45.833 0.00 0.00 0.00 3.51
259 260 1.226746 AAGTTGGACCTCGAAAAGCG 58.773 50.000 0.00 0.00 42.69 4.68
260 261 1.206831 GTTGGACCTCGAAAAGCGC 59.793 57.895 0.00 0.00 40.61 5.92
261 262 2.314647 TTGGACCTCGAAAAGCGCG 61.315 57.895 0.00 0.00 40.61 6.86
277 278 2.279250 CGCGGACGCACTATATTTTG 57.721 50.000 17.35 0.00 42.06 2.44
278 279 1.070843 CGCGGACGCACTATATTTTGG 60.071 52.381 17.35 0.00 42.06 3.28
279 280 2.206750 GCGGACGCACTATATTTTGGA 58.793 47.619 12.31 0.00 41.49 3.53
280 281 2.610374 GCGGACGCACTATATTTTGGAA 59.390 45.455 12.31 0.00 41.49 3.53
281 282 3.250040 GCGGACGCACTATATTTTGGAAT 59.750 43.478 12.31 0.00 41.49 3.01
282 283 4.772434 CGGACGCACTATATTTTGGAATG 58.228 43.478 0.00 0.00 0.00 2.67
283 284 4.319477 CGGACGCACTATATTTTGGAATGG 60.319 45.833 0.00 0.00 0.00 3.16
284 285 4.819630 GGACGCACTATATTTTGGAATGGA 59.180 41.667 0.00 0.00 0.00 3.41
285 286 5.049405 GGACGCACTATATTTTGGAATGGAG 60.049 44.000 0.00 0.00 0.00 3.86
286 287 4.821805 ACGCACTATATTTTGGAATGGAGG 59.178 41.667 0.00 0.00 0.00 4.30
287 288 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
288 289 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
289 290 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
290 291 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
291 292 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
292 293 8.386264 CACTATATTTTGGAATGGAGGGAGTAT 58.614 37.037 0.00 0.00 0.00 2.12
293 294 8.960064 ACTATATTTTGGAATGGAGGGAGTATT 58.040 33.333 0.00 0.00 0.00 1.89
298 299 8.909423 TTTTGGAATGGAGGGAGTATTATTTT 57.091 30.769 0.00 0.00 0.00 1.82
299 300 7.896383 TTGGAATGGAGGGAGTATTATTTTG 57.104 36.000 0.00 0.00 0.00 2.44
300 301 5.833131 TGGAATGGAGGGAGTATTATTTTGC 59.167 40.000 0.00 0.00 0.00 3.68
301 302 5.833131 GGAATGGAGGGAGTATTATTTTGCA 59.167 40.000 0.00 0.00 0.00 4.08
302 303 6.494835 GGAATGGAGGGAGTATTATTTTGCAT 59.505 38.462 0.00 0.00 0.00 3.96
303 304 7.015584 GGAATGGAGGGAGTATTATTTTGCATT 59.984 37.037 0.00 0.00 0.00 3.56
304 305 9.077885 GAATGGAGGGAGTATTATTTTGCATTA 57.922 33.333 0.00 0.00 0.00 1.90
305 306 9.605951 AATGGAGGGAGTATTATTTTGCATTAT 57.394 29.630 0.00 0.00 0.00 1.28
362 363 7.319052 TGACACTAGTTTAAATTACTCCCCA 57.681 36.000 0.00 0.00 0.00 4.96
363 364 7.163441 TGACACTAGTTTAAATTACTCCCCAC 58.837 38.462 0.00 0.00 0.00 4.61
364 365 7.016858 TGACACTAGTTTAAATTACTCCCCACT 59.983 37.037 0.00 0.00 0.00 4.00
365 366 8.439964 ACACTAGTTTAAATTACTCCCCACTA 57.560 34.615 0.00 0.00 0.00 2.74
366 367 9.054580 ACACTAGTTTAAATTACTCCCCACTAT 57.945 33.333 0.00 0.00 0.00 2.12
367 368 9.326413 CACTAGTTTAAATTACTCCCCACTATG 57.674 37.037 0.00 0.00 0.00 2.23
368 369 9.275572 ACTAGTTTAAATTACTCCCCACTATGA 57.724 33.333 0.00 0.00 0.00 2.15
369 370 9.543783 CTAGTTTAAATTACTCCCCACTATGAC 57.456 37.037 0.00 0.00 0.00 3.06
370 371 7.344134 AGTTTAAATTACTCCCCACTATGACC 58.656 38.462 0.00 0.00 0.00 4.02
371 372 6.894735 TTAAATTACTCCCCACTATGACCA 57.105 37.500 0.00 0.00 0.00 4.02
372 373 5.373812 AAATTACTCCCCACTATGACCAG 57.626 43.478 0.00 0.00 0.00 4.00
373 374 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
461 486 1.134280 CCCCAAGATTCGTGCAGATCT 60.134 52.381 0.00 0.00 0.00 2.75
465 490 4.262377 CCCAAGATTCGTGCAGATCTATCT 60.262 45.833 0.00 0.00 37.72 1.98
526 551 7.724061 ACAACCTACTAACTTGAATGATTTGGT 59.276 33.333 0.00 0.00 0.00 3.67
573 623 7.969004 TGAACTCGACCCCATATATATTTTCA 58.031 34.615 0.00 0.00 0.00 2.69
762 5097 3.995199 TCTCATCGTCAGTTGCTTTCTT 58.005 40.909 0.00 0.00 0.00 2.52
766 5101 2.394708 TCGTCAGTTGCTTTCTTCTCG 58.605 47.619 0.00 0.00 0.00 4.04
767 5102 2.034179 TCGTCAGTTGCTTTCTTCTCGA 59.966 45.455 0.00 0.00 0.00 4.04
771 5106 2.346847 CAGTTGCTTTCTTCTCGATCGG 59.653 50.000 16.41 6.26 0.00 4.18
1429 6094 6.303021 TGTTTGTTATTAAAGGTGGTCGAC 57.697 37.500 7.13 7.13 0.00 4.20
1604 6269 1.342819 GAGCGCATCAGGAACCTCTAT 59.657 52.381 11.47 0.00 0.00 1.98
2067 8059 4.262036 CCCCTTCTTTTGTTCAGTTTAGCC 60.262 45.833 0.00 0.00 0.00 3.93
2073 8065 7.164230 TCTTTTGTTCAGTTTAGCCTTTTGA 57.836 32.000 0.00 0.00 0.00 2.69
2126 8123 5.770417 ACAAGAAGAAACAGTCCGTAGTAG 58.230 41.667 0.00 0.00 0.00 2.57
2217 8240 2.047655 TTGCGGCGACTTAGGTGG 60.048 61.111 12.98 0.00 0.00 4.61
2253 8276 2.035961 CGGAGATGGTGTAATCGGACAT 59.964 50.000 0.00 0.00 0.00 3.06
2274 8297 6.533730 ACATGTGGAGACATTAAAGACAAGA 58.466 36.000 0.00 0.00 46.14 3.02
2275 8298 6.998074 ACATGTGGAGACATTAAAGACAAGAA 59.002 34.615 0.00 0.00 46.14 2.52
2276 8299 7.173907 ACATGTGGAGACATTAAAGACAAGAAG 59.826 37.037 0.00 0.00 46.14 2.85
2277 8300 6.826668 TGTGGAGACATTAAAGACAAGAAGA 58.173 36.000 0.00 0.00 46.14 2.87
2278 8301 7.453393 TGTGGAGACATTAAAGACAAGAAGAT 58.547 34.615 0.00 0.00 46.14 2.40
2279 8302 7.388776 TGTGGAGACATTAAAGACAAGAAGATG 59.611 37.037 0.00 0.00 46.14 2.90
2280 8303 7.604164 GTGGAGACATTAAAGACAAGAAGATGA 59.396 37.037 0.00 0.00 46.14 2.92
2281 8304 7.604164 TGGAGACATTAAAGACAAGAAGATGAC 59.396 37.037 0.00 0.00 33.40 3.06
2282 8305 7.604164 GGAGACATTAAAGACAAGAAGATGACA 59.396 37.037 0.00 0.00 0.00 3.58
2283 8306 9.160496 GAGACATTAAAGACAAGAAGATGACAT 57.840 33.333 0.00 0.00 0.00 3.06
2284 8307 9.160496 AGACATTAAAGACAAGAAGATGACATC 57.840 33.333 7.39 7.39 0.00 3.06
2285 8308 9.160496 GACATTAAAGACAAGAAGATGACATCT 57.840 33.333 12.37 12.37 42.61 2.90
2288 8311 8.689251 TTAAAGACAAGAAGATGACATCTACG 57.311 34.615 18.24 9.48 39.08 3.51
2289 8312 4.677584 AGACAAGAAGATGACATCTACGC 58.322 43.478 18.24 10.78 39.08 4.42
2290 8313 4.158579 AGACAAGAAGATGACATCTACGCA 59.841 41.667 18.24 0.00 39.08 5.24
2291 8314 4.177026 ACAAGAAGATGACATCTACGCAC 58.823 43.478 18.24 8.03 39.08 5.34
2292 8315 3.444703 AGAAGATGACATCTACGCACC 57.555 47.619 18.24 4.55 39.08 5.01
2293 8316 2.101582 AGAAGATGACATCTACGCACCC 59.898 50.000 18.24 3.02 39.08 4.61
2294 8317 0.385751 AGATGACATCTACGCACCCG 59.614 55.000 16.51 0.00 38.00 5.28
2295 8318 1.215655 GATGACATCTACGCACCCGC 61.216 60.000 8.25 0.00 38.22 6.13
2296 8319 1.955495 ATGACATCTACGCACCCGCA 61.955 55.000 0.00 0.00 38.40 5.69
2297 8320 1.447140 GACATCTACGCACCCGCAA 60.447 57.895 0.00 0.00 38.40 4.85
2298 8321 1.004320 ACATCTACGCACCCGCAAA 60.004 52.632 0.00 0.00 38.40 3.68
2299 8322 0.604243 ACATCTACGCACCCGCAAAA 60.604 50.000 0.00 0.00 38.40 2.44
2300 8323 0.519519 CATCTACGCACCCGCAAAAA 59.480 50.000 0.00 0.00 38.40 1.94
2301 8324 0.802494 ATCTACGCACCCGCAAAAAG 59.198 50.000 0.00 0.00 38.40 2.27
2302 8325 0.249953 TCTACGCACCCGCAAAAAGA 60.250 50.000 0.00 0.00 38.40 2.52
2303 8326 0.589223 CTACGCACCCGCAAAAAGAA 59.411 50.000 0.00 0.00 38.40 2.52
2304 8327 1.002251 CTACGCACCCGCAAAAAGAAA 60.002 47.619 0.00 0.00 38.40 2.52
2305 8328 0.173708 ACGCACCCGCAAAAAGAAAA 59.826 45.000 0.00 0.00 38.40 2.29
2306 8329 1.281899 CGCACCCGCAAAAAGAAAAA 58.718 45.000 0.00 0.00 38.40 1.94
2348 8372 2.330216 CTAAGACTATGGTGGAGGGGG 58.670 57.143 0.00 0.00 0.00 5.40
2376 8400 6.379988 AGAAACAAGGGCAAAAAGTAAAGAGA 59.620 34.615 0.00 0.00 0.00 3.10
2443 8504 6.239092 GGCTAGTGTTAGGGTTTAGAGATCTC 60.239 46.154 15.29 15.29 0.00 2.75
2445 8506 4.645588 AGTGTTAGGGTTTAGAGATCTCGG 59.354 45.833 16.97 0.00 34.09 4.63
2459 8520 3.589654 CTCGGCAACTGGGAAGCGA 62.590 63.158 0.00 0.00 0.00 4.93
2470 8532 1.129058 GGGAAGCGAGGGGAAGATAA 58.871 55.000 0.00 0.00 0.00 1.75
2475 8537 0.470341 GCGAGGGGAAGATAAAGCCT 59.530 55.000 0.00 0.00 0.00 4.58
2489 8551 6.297582 AGATAAAGCCTCATTCAGATCCAAG 58.702 40.000 0.00 0.00 0.00 3.61
2519 8581 6.364976 CGGTCCAAAGGTTGATTTGAATTTAC 59.635 38.462 0.91 0.00 41.71 2.01
2545 8607 0.179004 TTTCCTCGGCTGGCAAAAGA 60.179 50.000 1.08 0.00 0.00 2.52
2600 8662 2.589798 AGGCCATTGAATTGCATTCG 57.410 45.000 5.01 0.00 42.15 3.34
2601 8663 0.932399 GGCCATTGAATTGCATTCGC 59.068 50.000 0.00 0.00 42.15 4.70
2623 8685 1.064825 GGGGAGAAAGAAGGTGTCCA 58.935 55.000 0.00 0.00 0.00 4.02
2704 8766 6.097412 GCAAAAGGGAGATATGAACCAGATTT 59.903 38.462 0.00 0.00 0.00 2.17
2739 8801 7.330946 GCTAAGTTGTCCCCAATAAATTGAAAC 59.669 37.037 4.25 0.98 40.14 2.78
2748 8810 9.238368 TCCCCAATAAATTGAAACTAACTACAG 57.762 33.333 4.25 0.00 40.14 2.74
2794 8859 2.203422 CGTCCAAGGGGGTTTGCA 60.203 61.111 0.00 0.00 38.11 4.08
2809 8874 3.494398 GGTTTGCAGTGACTTAGGTGAGA 60.494 47.826 0.00 0.00 0.00 3.27
2841 8907 3.582647 TGGTGGAGAAGCTTAATCAGACA 59.417 43.478 0.00 0.00 0.00 3.41
2845 8911 6.398918 GTGGAGAAGCTTAATCAGACACTTA 58.601 40.000 0.00 0.00 0.00 2.24
2855 8921 5.627182 AATCAGACACTTAGAGGCATGAT 57.373 39.130 0.00 0.00 0.00 2.45
2874 8940 6.565435 GCATGATAGACAAGGAAATGACATCG 60.565 42.308 0.00 0.00 0.00 3.84
2891 8957 1.344065 TCGACAACTATGGTGGTGGT 58.656 50.000 0.00 0.00 28.16 4.16
2929 8995 1.342819 GAAGGATAGATGGCGAGTGCT 59.657 52.381 0.00 0.00 42.25 4.40
2962 9028 6.931838 ACGTGTTTGAGAAATAGGTAGATGA 58.068 36.000 0.00 0.00 30.54 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.550076 AGACTCATCTTGTCTTGGGAAG 57.450 45.455 0.00 0.00 41.45 3.46
1 2 4.838423 TGTAGACTCATCTTGTCTTGGGAA 59.162 41.667 1.67 0.00 41.45 3.97
2 3 4.416516 TGTAGACTCATCTTGTCTTGGGA 58.583 43.478 1.67 0.00 41.45 4.37
3 4 4.808414 TGTAGACTCATCTTGTCTTGGG 57.192 45.455 1.67 0.00 41.45 4.12
4 5 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
5 6 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
6 7 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
7 8 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
8 9 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
14 15 9.050601 GCTTCATTTATTAGCTTGTAGACTCAT 57.949 33.333 0.00 0.00 32.26 2.90
15 16 7.495934 GGCTTCATTTATTAGCTTGTAGACTCA 59.504 37.037 0.00 0.00 35.30 3.41
16 17 7.495934 TGGCTTCATTTATTAGCTTGTAGACTC 59.504 37.037 0.00 0.00 35.30 3.36
17 18 7.338710 TGGCTTCATTTATTAGCTTGTAGACT 58.661 34.615 0.00 0.00 35.30 3.24
18 19 7.553881 TGGCTTCATTTATTAGCTTGTAGAC 57.446 36.000 0.00 0.00 35.30 2.59
19 20 8.213679 AGATGGCTTCATTTATTAGCTTGTAGA 58.786 33.333 0.00 0.00 35.30 2.59
20 21 8.388484 AGATGGCTTCATTTATTAGCTTGTAG 57.612 34.615 0.00 0.00 35.30 2.74
22 23 8.930846 ATAGATGGCTTCATTTATTAGCTTGT 57.069 30.769 0.00 0.00 35.30 3.16
31 32 9.338968 AGGGAGTATAATAGATGGCTTCATTTA 57.661 33.333 3.03 1.24 0.00 1.40
32 33 8.224620 AGGGAGTATAATAGATGGCTTCATTT 57.775 34.615 3.03 0.00 0.00 2.32
33 34 7.092668 GGAGGGAGTATAATAGATGGCTTCATT 60.093 40.741 3.03 3.89 0.00 2.57
34 35 6.385467 GGAGGGAGTATAATAGATGGCTTCAT 59.615 42.308 3.03 0.00 0.00 2.57
35 36 5.721960 GGAGGGAGTATAATAGATGGCTTCA 59.278 44.000 3.03 0.00 0.00 3.02
36 37 5.721960 TGGAGGGAGTATAATAGATGGCTTC 59.278 44.000 0.00 0.00 0.00 3.86
37 38 5.665701 TGGAGGGAGTATAATAGATGGCTT 58.334 41.667 0.00 0.00 0.00 4.35
38 39 5.291100 TGGAGGGAGTATAATAGATGGCT 57.709 43.478 0.00 0.00 0.00 4.75
39 40 6.408662 GGAATGGAGGGAGTATAATAGATGGC 60.409 46.154 0.00 0.00 0.00 4.40
40 41 6.673978 TGGAATGGAGGGAGTATAATAGATGG 59.326 42.308 0.00 0.00 0.00 3.51
41 42 7.180946 TGTGGAATGGAGGGAGTATAATAGATG 59.819 40.741 0.00 0.00 0.00 2.90
42 43 7.256399 TGTGGAATGGAGGGAGTATAATAGAT 58.744 38.462 0.00 0.00 0.00 1.98
43 44 6.630131 TGTGGAATGGAGGGAGTATAATAGA 58.370 40.000 0.00 0.00 0.00 1.98
44 45 6.935240 TGTGGAATGGAGGGAGTATAATAG 57.065 41.667 0.00 0.00 0.00 1.73
45 46 7.294720 ACATTGTGGAATGGAGGGAGTATAATA 59.705 37.037 0.00 0.00 43.00 0.98
46 47 6.103205 ACATTGTGGAATGGAGGGAGTATAAT 59.897 38.462 0.00 0.00 43.00 1.28
47 48 5.431731 ACATTGTGGAATGGAGGGAGTATAA 59.568 40.000 0.00 0.00 43.00 0.98
48 49 4.975147 ACATTGTGGAATGGAGGGAGTATA 59.025 41.667 0.00 0.00 43.00 1.47
49 50 3.788142 ACATTGTGGAATGGAGGGAGTAT 59.212 43.478 0.00 0.00 43.00 2.12
50 51 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
51 52 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
52 53 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
53 54 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
57 58 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
58 59 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
59 60 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
60 61 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
61 62 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
62 63 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
63 64 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
64 65 6.036517 GTGAATAGAGGAAGCACTACATTGTG 59.963 42.308 0.00 0.00 40.62 3.33
65 66 6.109359 GTGAATAGAGGAAGCACTACATTGT 58.891 40.000 0.00 0.00 0.00 2.71
66 67 5.233050 CGTGAATAGAGGAAGCACTACATTG 59.767 44.000 0.00 0.00 0.00 2.82
67 68 5.105310 ACGTGAATAGAGGAAGCACTACATT 60.105 40.000 0.00 0.00 0.00 2.71
68 69 4.402793 ACGTGAATAGAGGAAGCACTACAT 59.597 41.667 0.00 0.00 0.00 2.29
69 70 3.762288 ACGTGAATAGAGGAAGCACTACA 59.238 43.478 0.00 0.00 0.00 2.74
70 71 4.106197 CACGTGAATAGAGGAAGCACTAC 58.894 47.826 10.90 0.00 0.00 2.73
71 72 3.762288 ACACGTGAATAGAGGAAGCACTA 59.238 43.478 25.01 0.00 0.00 2.74
72 73 2.563179 ACACGTGAATAGAGGAAGCACT 59.437 45.455 25.01 0.00 0.00 4.40
73 74 2.960819 ACACGTGAATAGAGGAAGCAC 58.039 47.619 25.01 0.00 0.00 4.40
74 75 3.678056 AACACGTGAATAGAGGAAGCA 57.322 42.857 25.01 0.00 0.00 3.91
75 76 3.994392 TGAAACACGTGAATAGAGGAAGC 59.006 43.478 25.01 0.00 0.00 3.86
76 77 5.696724 AGTTGAAACACGTGAATAGAGGAAG 59.303 40.000 25.01 0.00 0.00 3.46
77 78 5.607477 AGTTGAAACACGTGAATAGAGGAA 58.393 37.500 25.01 0.78 0.00 3.36
78 79 5.209818 AGTTGAAACACGTGAATAGAGGA 57.790 39.130 25.01 0.00 0.00 3.71
79 80 5.924475 AAGTTGAAACACGTGAATAGAGG 57.076 39.130 25.01 0.00 0.00 3.69
80 81 6.846283 GTCAAAGTTGAAACACGTGAATAGAG 59.154 38.462 25.01 2.15 39.21 2.43
81 82 6.238266 GGTCAAAGTTGAAACACGTGAATAGA 60.238 38.462 25.01 1.86 39.21 1.98
82 83 5.907391 GGTCAAAGTTGAAACACGTGAATAG 59.093 40.000 25.01 0.00 39.21 1.73
83 84 5.502706 CGGTCAAAGTTGAAACACGTGAATA 60.503 40.000 25.01 2.33 39.21 1.75
84 85 4.668289 GGTCAAAGTTGAAACACGTGAAT 58.332 39.130 25.01 10.29 39.21 2.57
85 86 3.425094 CGGTCAAAGTTGAAACACGTGAA 60.425 43.478 25.01 2.35 39.21 3.18
86 87 2.094575 CGGTCAAAGTTGAAACACGTGA 59.905 45.455 25.01 0.00 39.21 4.35
87 88 2.159626 ACGGTCAAAGTTGAAACACGTG 60.160 45.455 15.48 15.48 39.21 4.49
88 89 2.078392 ACGGTCAAAGTTGAAACACGT 58.922 42.857 0.00 2.58 39.21 4.49
89 90 2.817538 ACGGTCAAAGTTGAAACACG 57.182 45.000 0.00 2.00 39.21 4.49
90 91 7.514573 AAATTTACGGTCAAAGTTGAAACAC 57.485 32.000 0.00 0.00 39.21 3.32
91 92 9.074443 GTTAAATTTACGGTCAAAGTTGAAACA 57.926 29.630 0.00 0.00 39.21 2.83
92 93 9.292846 AGTTAAATTTACGGTCAAAGTTGAAAC 57.707 29.630 0.00 0.00 39.21 2.78
94 95 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
95 96 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
96 97 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
97 98 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
98 99 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
99 100 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
100 101 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
101 102 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
102 103 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
103 104 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
104 105 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
105 106 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
106 107 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
107 108 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
108 109 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
109 110 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
110 111 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
111 112 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
112 113 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
113 114 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
114 115 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
115 116 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
116 117 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
128 129 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
129 130 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
130 131 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
131 132 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
132 133 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
133 134 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
134 135 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
135 136 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
136 137 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
137 138 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
138 139 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
139 140 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
195 196 0.038709 CAATTGCGGCGGGAGAAAAA 60.039 50.000 9.78 0.00 0.00 1.94
196 197 1.583986 CAATTGCGGCGGGAGAAAA 59.416 52.632 9.78 0.00 0.00 2.29
197 198 2.339556 CCAATTGCGGCGGGAGAAA 61.340 57.895 9.78 0.00 0.00 2.52
198 199 2.749839 CCAATTGCGGCGGGAGAA 60.750 61.111 9.78 0.00 0.00 2.87
199 200 3.969250 GACCAATTGCGGCGGGAGA 62.969 63.158 9.78 0.00 0.00 3.71
200 201 3.508840 GACCAATTGCGGCGGGAG 61.509 66.667 9.78 0.00 0.00 4.30
201 202 3.969250 GAGACCAATTGCGGCGGGA 62.969 63.158 9.78 0.00 0.00 5.14
202 203 3.508840 GAGACCAATTGCGGCGGG 61.509 66.667 9.78 2.79 0.00 6.13
203 204 3.864686 CGAGACCAATTGCGGCGG 61.865 66.667 9.78 0.00 0.00 6.13
204 205 2.677003 AACGAGACCAATTGCGGCG 61.677 57.895 0.51 0.51 0.00 6.46
205 206 1.154225 CAACGAGACCAATTGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
206 207 1.086696 ATCAACGAGACCAATTGCGG 58.913 50.000 0.00 0.00 0.00 5.69
207 208 2.900122 AATCAACGAGACCAATTGCG 57.100 45.000 0.00 0.47 0.00 4.85
208 209 7.581011 AAATTTAATCAACGAGACCAATTGC 57.419 32.000 0.00 0.00 0.00 3.56
210 211 9.801873 CCATAAATTTAATCAACGAGACCAATT 57.198 29.630 1.21 0.00 0.00 2.32
211 212 9.184523 TCCATAAATTTAATCAACGAGACCAAT 57.815 29.630 1.21 0.00 0.00 3.16
212 213 8.568676 TCCATAAATTTAATCAACGAGACCAA 57.431 30.769 1.21 0.00 0.00 3.67
213 214 8.746052 ATCCATAAATTTAATCAACGAGACCA 57.254 30.769 1.21 0.00 0.00 4.02
226 227 9.116067 CGAGGTCCAACTTTATCCATAAATTTA 57.884 33.333 0.00 0.00 32.36 1.40
227 228 7.832187 TCGAGGTCCAACTTTATCCATAAATTT 59.168 33.333 0.00 0.00 32.36 1.82
228 229 7.343357 TCGAGGTCCAACTTTATCCATAAATT 58.657 34.615 0.00 0.00 32.36 1.82
229 230 6.895782 TCGAGGTCCAACTTTATCCATAAAT 58.104 36.000 0.00 0.00 32.36 1.40
230 231 6.302535 TCGAGGTCCAACTTTATCCATAAA 57.697 37.500 0.00 0.00 0.00 1.40
231 232 5.943349 TCGAGGTCCAACTTTATCCATAA 57.057 39.130 0.00 0.00 0.00 1.90
232 233 5.943349 TTCGAGGTCCAACTTTATCCATA 57.057 39.130 0.00 0.00 0.00 2.74
233 234 4.837093 TTCGAGGTCCAACTTTATCCAT 57.163 40.909 0.00 0.00 0.00 3.41
234 235 4.627284 TTTCGAGGTCCAACTTTATCCA 57.373 40.909 0.00 0.00 0.00 3.41
235 236 4.142665 GCTTTTCGAGGTCCAACTTTATCC 60.143 45.833 0.00 0.00 0.00 2.59
236 237 4.435651 CGCTTTTCGAGGTCCAACTTTATC 60.436 45.833 0.00 0.00 41.67 1.75
237 238 3.435671 CGCTTTTCGAGGTCCAACTTTAT 59.564 43.478 0.00 0.00 41.67 1.40
238 239 2.803956 CGCTTTTCGAGGTCCAACTTTA 59.196 45.455 0.00 0.00 41.67 1.85
239 240 1.602377 CGCTTTTCGAGGTCCAACTTT 59.398 47.619 0.00 0.00 41.67 2.66
240 241 1.226746 CGCTTTTCGAGGTCCAACTT 58.773 50.000 0.00 0.00 41.67 2.66
241 242 1.228657 GCGCTTTTCGAGGTCCAACT 61.229 55.000 0.00 0.00 41.67 3.16
242 243 1.206831 GCGCTTTTCGAGGTCCAAC 59.793 57.895 0.00 0.00 41.67 3.77
243 244 2.314647 CGCGCTTTTCGAGGTCCAA 61.315 57.895 5.56 0.00 41.67 3.53
244 245 2.736995 CGCGCTTTTCGAGGTCCA 60.737 61.111 5.56 0.00 41.67 4.02
258 259 1.070843 CCAAAATATAGTGCGTCCGCG 60.071 52.381 7.22 0.00 45.51 6.46
259 260 2.206750 TCCAAAATATAGTGCGTCCGC 58.793 47.619 4.42 4.42 42.35 5.54
260 261 4.319477 CCATTCCAAAATATAGTGCGTCCG 60.319 45.833 0.00 0.00 0.00 4.79
261 262 4.819630 TCCATTCCAAAATATAGTGCGTCC 59.180 41.667 0.00 0.00 0.00 4.79
262 263 5.049405 CCTCCATTCCAAAATATAGTGCGTC 60.049 44.000 0.00 0.00 0.00 5.19
263 264 4.821805 CCTCCATTCCAAAATATAGTGCGT 59.178 41.667 0.00 0.00 0.00 5.24
264 265 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
265 266 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
266 267 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
267 268 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
272 273 9.506042 AAAATAATACTCCCTCCATTCCAAAAT 57.494 29.630 0.00 0.00 0.00 1.82
273 274 8.757877 CAAAATAATACTCCCTCCATTCCAAAA 58.242 33.333 0.00 0.00 0.00 2.44
274 275 7.147742 GCAAAATAATACTCCCTCCATTCCAAA 60.148 37.037 0.00 0.00 0.00 3.28
275 276 6.323739 GCAAAATAATACTCCCTCCATTCCAA 59.676 38.462 0.00 0.00 0.00 3.53
276 277 5.833131 GCAAAATAATACTCCCTCCATTCCA 59.167 40.000 0.00 0.00 0.00 3.53
277 278 5.833131 TGCAAAATAATACTCCCTCCATTCC 59.167 40.000 0.00 0.00 0.00 3.01
278 279 6.959639 TGCAAAATAATACTCCCTCCATTC 57.040 37.500 0.00 0.00 0.00 2.67
279 280 7.919385 AATGCAAAATAATACTCCCTCCATT 57.081 32.000 0.00 0.00 0.00 3.16
336 337 9.049050 TGGGGAGTAATTTAAACTAGTGTCATA 57.951 33.333 0.00 0.00 0.00 2.15
337 338 7.827729 GTGGGGAGTAATTTAAACTAGTGTCAT 59.172 37.037 0.00 0.00 0.00 3.06
338 339 7.016858 AGTGGGGAGTAATTTAAACTAGTGTCA 59.983 37.037 0.00 0.00 0.00 3.58
339 340 7.392418 AGTGGGGAGTAATTTAAACTAGTGTC 58.608 38.462 0.00 0.00 0.00 3.67
340 341 7.325725 AGTGGGGAGTAATTTAAACTAGTGT 57.674 36.000 0.00 0.00 0.00 3.55
341 342 9.326413 CATAGTGGGGAGTAATTTAAACTAGTG 57.674 37.037 0.00 0.00 0.00 2.74
342 343 9.275572 TCATAGTGGGGAGTAATTTAAACTAGT 57.724 33.333 0.00 0.00 0.00 2.57
343 344 9.543783 GTCATAGTGGGGAGTAATTTAAACTAG 57.456 37.037 0.00 0.00 0.00 2.57
344 345 8.488668 GGTCATAGTGGGGAGTAATTTAAACTA 58.511 37.037 0.00 0.00 0.00 2.24
345 346 7.037153 TGGTCATAGTGGGGAGTAATTTAAACT 60.037 37.037 0.00 0.00 0.00 2.66
346 347 7.114095 TGGTCATAGTGGGGAGTAATTTAAAC 58.886 38.462 0.00 0.00 0.00 2.01
347 348 7.273457 TGGTCATAGTGGGGAGTAATTTAAA 57.727 36.000 0.00 0.00 0.00 1.52
348 349 6.634039 GCTGGTCATAGTGGGGAGTAATTTAA 60.634 42.308 0.00 0.00 0.00 1.52
349 350 5.163237 GCTGGTCATAGTGGGGAGTAATTTA 60.163 44.000 0.00 0.00 0.00 1.40
350 351 4.385310 GCTGGTCATAGTGGGGAGTAATTT 60.385 45.833 0.00 0.00 0.00 1.82
351 352 3.136626 GCTGGTCATAGTGGGGAGTAATT 59.863 47.826 0.00 0.00 0.00 1.40
352 353 2.706190 GCTGGTCATAGTGGGGAGTAAT 59.294 50.000 0.00 0.00 0.00 1.89
353 354 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
354 355 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
355 356 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
356 357 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
357 358 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
358 359 1.141053 GTTAGGCTGGTCATAGTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
359 360 1.141053 GGTTAGGCTGGTCATAGTGGG 59.859 57.143 0.00 0.00 0.00 4.61
360 361 1.837439 TGGTTAGGCTGGTCATAGTGG 59.163 52.381 0.00 0.00 0.00 4.00
361 362 2.738643 CGTGGTTAGGCTGGTCATAGTG 60.739 54.545 0.00 0.00 0.00 2.74
362 363 1.480954 CGTGGTTAGGCTGGTCATAGT 59.519 52.381 0.00 0.00 0.00 2.12
363 364 1.202533 CCGTGGTTAGGCTGGTCATAG 60.203 57.143 0.00 0.00 0.00 2.23
364 365 0.828022 CCGTGGTTAGGCTGGTCATA 59.172 55.000 0.00 0.00 0.00 2.15
365 366 1.602237 CCGTGGTTAGGCTGGTCAT 59.398 57.895 0.00 0.00 0.00 3.06
366 367 3.065306 CCGTGGTTAGGCTGGTCA 58.935 61.111 0.00 0.00 0.00 4.02
373 374 1.363885 GGTAAAGCGCCGTGGTTAGG 61.364 60.000 2.29 0.00 37.29 2.69
461 486 4.501571 GGAATCGTTGAGGCTGCTTAGATA 60.502 45.833 0.00 0.00 0.00 1.98
465 490 1.555075 AGGAATCGTTGAGGCTGCTTA 59.445 47.619 0.00 0.00 0.00 3.09
526 551 3.402110 TCGCTTGATTTGCAGAAGAAGA 58.598 40.909 3.55 0.00 0.00 2.87
665 4985 4.622740 GCCTTCCGTTTCAATCAAAATCTG 59.377 41.667 0.00 0.00 0.00 2.90
762 5097 2.483745 GTGCGTGACCGATCGAGA 59.516 61.111 18.66 0.00 35.63 4.04
766 5101 3.838795 GTGCGTGCGTGACCGATC 61.839 66.667 0.00 0.00 35.63 3.69
771 5106 0.446222 ATTTATGGTGCGTGCGTGAC 59.554 50.000 0.00 0.00 0.00 3.67
1357 5960 5.409643 AACGAGGCGATTAATTTGATCAG 57.590 39.130 0.00 0.00 0.00 2.90
1604 6269 1.676678 GCCACGTCTGAGCCTCCATA 61.677 60.000 0.00 0.00 0.00 2.74
2067 8059 8.068893 CTGATCCAACAGTTTTTGATCAAAAG 57.931 34.615 27.52 20.47 40.83 2.27
2104 8096 5.629849 CACTACTACGGACTGTTTCTTCTTG 59.370 44.000 0.00 0.00 0.00 3.02
2253 8276 6.826668 TCTTCTTGTCTTTAATGTCTCCACA 58.173 36.000 0.00 0.00 36.78 4.17
2274 8297 1.202417 CGGGTGCGTAGATGTCATCTT 60.202 52.381 20.27 5.48 40.76 2.40
2275 8298 0.385751 CGGGTGCGTAGATGTCATCT 59.614 55.000 19.12 19.12 43.33 2.90
2276 8299 1.215655 GCGGGTGCGTAGATGTCATC 61.216 60.000 4.52 4.52 0.00 2.92
2277 8300 1.227263 GCGGGTGCGTAGATGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
2278 8301 2.183300 GCGGGTGCGTAGATGTCA 59.817 61.111 0.00 0.00 0.00 3.58
2307 8330 8.740906 TCTTAGTCTCGTAGATGTCATCTTTTT 58.259 33.333 20.27 0.00 40.76 1.94
2308 8331 8.185505 GTCTTAGTCTCGTAGATGTCATCTTTT 58.814 37.037 20.27 0.00 40.76 2.27
2309 8332 7.554835 AGTCTTAGTCTCGTAGATGTCATCTTT 59.445 37.037 20.27 0.19 40.76 2.52
2348 8372 2.127251 CTTTTTGCCCTTGTTTCTCGC 58.873 47.619 0.00 0.00 0.00 5.03
2389 8413 2.182614 ATTTCTCAAACGTGCCGCCG 62.183 55.000 0.00 0.44 0.00 6.46
2396 8420 2.649531 TCCACCCATTTCTCAAACGT 57.350 45.000 0.00 0.00 0.00 3.99
2443 8504 3.121030 CTCGCTTCCCAGTTGCCG 61.121 66.667 0.00 0.00 0.00 5.69
2445 8506 2.747855 CCCTCGCTTCCCAGTTGC 60.748 66.667 0.00 0.00 0.00 4.17
2459 8520 3.788142 TGAATGAGGCTTTATCTTCCCCT 59.212 43.478 0.00 0.00 0.00 4.79
2470 8532 2.652590 GCTTGGATCTGAATGAGGCTT 58.347 47.619 0.00 0.00 0.00 4.35
2475 8537 2.358957 CGTTGGCTTGGATCTGAATGA 58.641 47.619 0.00 0.00 0.00 2.57
2489 8551 1.104577 TCAACCTTTGGACCGTTGGC 61.105 55.000 9.31 0.00 37.93 4.52
2519 8581 1.135286 GCCAGCCGAGGAAATTTTCTG 60.135 52.381 2.93 0.00 0.00 3.02
2529 8591 0.890683 AAATCTTTTGCCAGCCGAGG 59.109 50.000 0.00 0.00 0.00 4.63
2545 8607 6.019156 CGTTTGTGTGAATTTAGGCAACAAAT 60.019 34.615 0.00 0.00 41.41 2.32
2600 8662 0.391793 CACCTTCTTTCTCCCCTCGC 60.392 60.000 0.00 0.00 0.00 5.03
2601 8663 0.977395 ACACCTTCTTTCTCCCCTCG 59.023 55.000 0.00 0.00 0.00 4.63
2623 8685 2.890474 CACGCGCCGCTAGGAAAT 60.890 61.111 5.73 0.00 41.02 2.17
2704 8766 4.598373 TGGGGACAACTTAGCTTAAACCTA 59.402 41.667 0.00 0.00 37.44 3.08
2760 8822 6.401047 CCTTGGACGCACATATATGTTATTCG 60.401 42.308 15.85 16.98 39.39 3.34
2794 8859 2.530701 CCACCTCTCACCTAAGTCACT 58.469 52.381 0.00 0.00 0.00 3.41
2809 8874 2.412591 CTTCTCCACCATATCCCACCT 58.587 52.381 0.00 0.00 0.00 4.00
2841 8907 5.211973 TCCTTGTCTATCATGCCTCTAAGT 58.788 41.667 0.00 0.00 0.00 2.24
2845 8911 5.131642 TCATTTCCTTGTCTATCATGCCTCT 59.868 40.000 0.00 0.00 0.00 3.69
2855 8921 5.400066 TGTCGATGTCATTTCCTTGTCTA 57.600 39.130 0.00 0.00 0.00 2.59
2874 8940 1.165270 GCACCACCACCATAGTTGTC 58.835 55.000 0.00 0.00 0.00 3.18
2891 8957 3.056891 CCTTCTTGCCCTAATTTTTCGCA 60.057 43.478 0.00 0.00 0.00 5.10
2929 8995 3.902261 TCTCAAACACGTCGCTAAGTA 57.098 42.857 0.00 0.00 0.00 2.24
2941 9007 9.256228 ACTAGTCATCTACCTATTTCTCAAACA 57.744 33.333 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.