Multiple sequence alignment - TraesCS3A01G448400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G448400 chr3A 100.000 3614 0 0 1 3614 688577575 688581188 0.000000e+00 6674
1 TraesCS3A01G448400 chr3A 83.347 1237 129 33 1194 2378 688616289 688617500 0.000000e+00 1072
2 TraesCS3A01G448400 chr3A 85.000 740 76 12 2450 3188 688618148 688618853 0.000000e+00 719
3 TraesCS3A01G448400 chr3A 89.888 356 34 2 116 470 176163247 176162893 1.350000e-124 457
4 TraesCS3A01G448400 chr3A 100.000 137 0 0 3989 4125 688581563 688581699 1.900000e-63 254
5 TraesCS3A01G448400 chr3A 94.595 74 3 1 1 73 176163327 176163254 3.370000e-21 113
6 TraesCS3A01G448400 chr3D 90.317 3088 166 48 584 3581 551271279 551274323 0.000000e+00 3923
7 TraesCS3A01G448400 chr3D 85.979 756 87 10 2450 3204 551392283 551391546 0.000000e+00 791
8 TraesCS3A01G448400 chr3D 81.016 748 85 23 1199 1916 551393669 551392949 3.630000e-150 542
9 TraesCS3A01G448400 chr3D 88.991 436 42 4 1925 2357 551392896 551392464 6.070000e-148 534
10 TraesCS3A01G448400 chr3D 92.308 130 10 0 3989 4118 551274394 551274523 7.040000e-43 185
11 TraesCS3A01G448400 chr3D 92.742 124 9 0 465 588 551271121 551271244 3.280000e-41 180
12 TraesCS3A01G448400 chr3B 87.353 2127 154 41 1539 3613 730938458 730940521 0.000000e+00 2331
13 TraesCS3A01G448400 chr3B 86.916 749 84 11 2506 3249 731264914 731265653 0.000000e+00 828
14 TraesCS3A01G448400 chr3B 89.371 461 33 8 1925 2378 731264307 731264758 2.150000e-157 566
15 TraesCS3A01G448400 chr3B 81.881 723 78 22 1199 1899 731263506 731264197 1.000000e-155 560
16 TraesCS3A01G448400 chr3B 80.093 643 45 41 578 1150 730937347 730937976 6.420000e-108 401
17 TraesCS3A01G448400 chr3B 88.485 330 27 6 1175 1498 730938133 730938457 5.000000e-104 388
18 TraesCS3A01G448400 chr3B 91.406 128 10 1 3989 4116 730940561 730940687 1.520000e-39 174
19 TraesCS3A01G448400 chr3B 91.597 119 7 1 470 585 730937197 730937315 1.190000e-35 161
20 TraesCS3A01G448400 chr3B 95.312 64 3 0 584 647 731262627 731262690 7.300000e-18 102
21 TraesCS3A01G448400 chr4A 86.849 730 57 8 2123 2819 11173971 11174694 0.000000e+00 780
22 TraesCS3A01G448400 chr4A 94.712 208 11 0 113 320 677991239 677991446 1.430000e-84 324
23 TraesCS3A01G448400 chr4A 94.595 74 3 1 1 73 677991162 677991235 3.370000e-21 113
24 TraesCS3A01G448400 chr7D 86.277 736 62 9 2123 2825 165953483 165952754 0.000000e+00 763
25 TraesCS3A01G448400 chr2A 93.575 358 23 0 113 470 761422480 761422837 6.070000e-148 534
26 TraesCS3A01G448400 chr2A 85.196 358 52 1 112 469 469119129 469119485 2.340000e-97 366
27 TraesCS3A01G448400 chr2A 95.946 74 2 1 1 73 761422403 761422476 7.240000e-23 119
28 TraesCS3A01G448400 chr6A 93.296 358 24 0 113 470 393028456 393028813 2.820000e-146 529
29 TraesCS3A01G448400 chr6A 86.313 358 47 2 113 469 307872770 307872414 5.000000e-104 388
30 TraesCS3A01G448400 chr6A 94.595 74 3 1 1 73 393028379 393028452 3.370000e-21 113
31 TraesCS3A01G448400 chr2D 88.235 357 42 0 113 469 372230676 372231032 1.060000e-115 427
32 TraesCS3A01G448400 chr2D 95.946 74 2 1 1 73 372230599 372230672 7.240000e-23 119
33 TraesCS3A01G448400 chr5A 85.994 357 50 0 113 469 395319469 395319113 2.330000e-102 383
34 TraesCS3A01G448400 chr5A 83.776 339 55 0 132 470 125160213 125160551 5.140000e-84 322
35 TraesCS3A01G448400 chr7A 85.714 154 17 4 3260 3408 715930080 715930233 1.540000e-34 158
36 TraesCS3A01G448400 chr6B 97.297 74 1 1 1 73 616450575 616450648 1.560000e-24 124
37 TraesCS3A01G448400 chr4B 95.946 74 2 1 1 73 315057770 315057843 7.240000e-23 119
38 TraesCS3A01G448400 chr1B 95.946 74 2 1 1 73 453301477 453301404 7.240000e-23 119
39 TraesCS3A01G448400 chr2B 94.595 74 2 2 1 73 677831756 677831684 3.370000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G448400 chr3A 688577575 688581699 4124 False 3464.000000 6674 100.000000 1 4125 2 chr3A.!!$F1 4124
1 TraesCS3A01G448400 chr3A 688616289 688618853 2564 False 895.500000 1072 84.173500 1194 3188 2 chr3A.!!$F2 1994
2 TraesCS3A01G448400 chr3D 551271121 551274523 3402 False 1429.333333 3923 91.789000 465 4118 3 chr3D.!!$F1 3653
3 TraesCS3A01G448400 chr3D 551391546 551393669 2123 True 622.333333 791 85.328667 1199 3204 3 chr3D.!!$R1 2005
4 TraesCS3A01G448400 chr3B 730937197 730940687 3490 False 691.000000 2331 87.786800 470 4116 5 chr3B.!!$F1 3646
5 TraesCS3A01G448400 chr3B 731262627 731265653 3026 False 514.000000 828 88.370000 584 3249 4 chr3B.!!$F2 2665
6 TraesCS3A01G448400 chr4A 11173971 11174694 723 False 780.000000 780 86.849000 2123 2819 1 chr4A.!!$F1 696
7 TraesCS3A01G448400 chr7D 165952754 165953483 729 True 763.000000 763 86.277000 2123 2825 1 chr7D.!!$R1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 947 0.035725 GGTAACCCGTTAGCTTGGCT 60.036 55.0 9.07 0.00 43.41 4.75 F
772 1007 0.320247 CCTCAGCACTGTCTCACACC 60.320 60.0 0.00 0.00 0.00 4.16 F
1685 2207 0.242825 GTCGGTTCAGACGTCATGGA 59.757 55.0 19.50 9.38 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 2207 0.110486 ATGGTCGCCCAGTTTGAAGT 59.890 50.0 0.00 0.0 46.15 3.01 R
2607 3840 0.650512 CTAGTGCAATTACGCCACGG 59.349 55.0 0.00 0.0 0.00 4.94 R
3236 4475 0.179056 CGGACCGGAAAGCATACCAT 60.179 55.0 9.46 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.717639 AACATCTTGATCTTCCCGGG 57.282 50.000 16.85 16.85 0.00 5.73
20 21 0.839946 ACATCTTGATCTTCCCGGGG 59.160 55.000 23.50 6.77 0.00 5.73
21 22 0.536006 CATCTTGATCTTCCCGGGGC 60.536 60.000 23.50 5.95 0.00 5.80
22 23 1.709994 ATCTTGATCTTCCCGGGGCC 61.710 60.000 23.50 6.10 0.00 5.80
23 24 3.416880 TTGATCTTCCCGGGGCCC 61.417 66.667 23.50 15.76 0.00 5.80
24 25 4.750695 TGATCTTCCCGGGGCCCA 62.751 66.667 26.86 9.24 0.00 5.36
25 26 3.416880 GATCTTCCCGGGGCCCAA 61.417 66.667 26.86 8.30 0.00 4.12
26 27 3.420482 ATCTTCCCGGGGCCCAAG 61.420 66.667 26.86 18.68 0.00 3.61
33 34 4.757355 CGGGGCCCAAGCATTCCA 62.757 66.667 26.86 0.00 42.56 3.53
34 35 2.041612 GGGGCCCAAGCATTCCAT 60.042 61.111 26.86 0.00 42.56 3.41
35 36 1.232792 GGGGCCCAAGCATTCCATA 59.767 57.895 26.86 0.00 42.56 2.74
36 37 0.178924 GGGGCCCAAGCATTCCATAT 60.179 55.000 26.86 0.00 42.56 1.78
37 38 0.971386 GGGCCCAAGCATTCCATATG 59.029 55.000 19.95 0.00 42.56 1.78
38 39 1.481055 GGGCCCAAGCATTCCATATGA 60.481 52.381 19.95 0.00 42.56 2.15
39 40 2.532843 GGCCCAAGCATTCCATATGAT 58.467 47.619 3.65 0.00 42.56 2.45
40 41 2.494870 GGCCCAAGCATTCCATATGATC 59.505 50.000 3.65 0.00 42.56 2.92
41 42 3.428532 GCCCAAGCATTCCATATGATCT 58.571 45.455 3.65 0.00 39.53 2.75
42 43 3.830755 GCCCAAGCATTCCATATGATCTT 59.169 43.478 3.65 0.00 39.53 2.40
43 44 4.321750 GCCCAAGCATTCCATATGATCTTG 60.322 45.833 3.65 9.19 39.53 3.02
44 45 4.321750 CCCAAGCATTCCATATGATCTTGC 60.322 45.833 3.65 7.88 30.35 4.01
45 46 4.321750 CCAAGCATTCCATATGATCTTGCC 60.322 45.833 3.65 0.00 30.35 4.52
46 47 3.079578 AGCATTCCATATGATCTTGCCG 58.920 45.455 3.65 0.00 0.00 5.69
47 48 3.076621 GCATTCCATATGATCTTGCCGA 58.923 45.455 3.65 0.00 0.00 5.54
48 49 3.503363 GCATTCCATATGATCTTGCCGAA 59.497 43.478 3.65 0.00 0.00 4.30
49 50 4.022935 GCATTCCATATGATCTTGCCGAAA 60.023 41.667 3.65 0.00 0.00 3.46
50 51 5.507817 GCATTCCATATGATCTTGCCGAAAA 60.508 40.000 3.65 0.00 0.00 2.29
51 52 5.499139 TTCCATATGATCTTGCCGAAAAC 57.501 39.130 3.65 0.00 0.00 2.43
52 53 3.882888 TCCATATGATCTTGCCGAAAACC 59.117 43.478 3.65 0.00 0.00 3.27
53 54 3.303990 CCATATGATCTTGCCGAAAACCG 60.304 47.826 3.65 0.00 38.18 4.44
54 55 2.107950 ATGATCTTGCCGAAAACCGA 57.892 45.000 0.00 0.00 41.76 4.69
55 56 1.438651 TGATCTTGCCGAAAACCGAG 58.561 50.000 0.00 0.00 41.76 4.63
56 57 0.727398 GATCTTGCCGAAAACCGAGG 59.273 55.000 0.00 0.00 41.76 4.63
57 58 0.323629 ATCTTGCCGAAAACCGAGGA 59.676 50.000 0.00 0.00 41.76 3.71
58 59 0.601841 TCTTGCCGAAAACCGAGGAC 60.602 55.000 0.00 0.00 41.76 3.85
59 60 1.897398 CTTGCCGAAAACCGAGGACG 61.897 60.000 0.00 0.00 41.76 4.79
60 61 2.356673 GCCGAAAACCGAGGACGT 60.357 61.111 0.00 0.00 41.76 4.34
61 62 2.378084 GCCGAAAACCGAGGACGTC 61.378 63.158 7.13 7.13 41.76 4.34
62 63 1.007038 CCGAAAACCGAGGACGTCA 60.007 57.895 18.91 0.00 41.76 4.35
63 64 0.389426 CCGAAAACCGAGGACGTCAT 60.389 55.000 18.91 11.04 41.76 3.06
64 65 0.713883 CGAAAACCGAGGACGTCATG 59.286 55.000 18.91 5.91 41.76 3.07
65 66 0.442699 GAAAACCGAGGACGTCATGC 59.557 55.000 18.91 4.68 37.88 4.06
66 67 0.953960 AAAACCGAGGACGTCATGCC 60.954 55.000 18.91 0.00 37.88 4.40
67 68 2.798148 AAACCGAGGACGTCATGCCC 62.798 60.000 18.91 0.00 37.88 5.36
68 69 3.461773 CCGAGGACGTCATGCCCT 61.462 66.667 18.91 4.97 37.88 5.19
69 70 2.202797 CGAGGACGTCATGCCCTG 60.203 66.667 18.91 0.00 34.56 4.45
70 71 2.187946 GAGGACGTCATGCCCTGG 59.812 66.667 18.91 0.00 0.00 4.45
71 72 2.284625 AGGACGTCATGCCCTGGA 60.285 61.111 18.91 0.00 0.00 3.86
72 73 1.899437 GAGGACGTCATGCCCTGGAA 61.899 60.000 18.91 0.00 0.00 3.53
73 74 1.745489 GGACGTCATGCCCTGGAAC 60.745 63.158 18.91 0.00 0.00 3.62
74 75 1.745489 GACGTCATGCCCTGGAACC 60.745 63.158 11.55 0.00 0.00 3.62
75 76 2.438434 CGTCATGCCCTGGAACCC 60.438 66.667 0.00 0.00 0.00 4.11
76 77 2.971598 CGTCATGCCCTGGAACCCT 61.972 63.158 0.00 0.00 0.00 4.34
77 78 1.077429 GTCATGCCCTGGAACCCTC 60.077 63.158 0.00 0.00 0.00 4.30
78 79 2.124570 CATGCCCTGGAACCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
79 80 2.285368 ATGCCCTGGAACCCTCGA 60.285 61.111 0.00 0.00 0.00 4.04
80 81 2.370445 ATGCCCTGGAACCCTCGAG 61.370 63.158 5.13 5.13 0.00 4.04
81 82 3.787001 GCCCTGGAACCCTCGAGG 61.787 72.222 25.36 25.36 44.97 4.63
85 86 2.901975 CTGGAACCCTCGAGGATCA 58.098 57.895 33.39 21.00 39.20 2.92
86 87 1.195115 CTGGAACCCTCGAGGATCAA 58.805 55.000 33.39 21.21 39.20 2.57
87 88 1.137872 CTGGAACCCTCGAGGATCAAG 59.862 57.143 33.39 25.75 39.20 3.02
88 89 0.466124 GGAACCCTCGAGGATCAAGG 59.534 60.000 33.39 16.91 39.20 3.61
89 90 1.486211 GAACCCTCGAGGATCAAGGA 58.514 55.000 33.39 0.00 37.38 3.36
90 91 1.137282 GAACCCTCGAGGATCAAGGAC 59.863 57.143 33.39 10.66 37.38 3.85
91 92 0.688087 ACCCTCGAGGATCAAGGACC 60.688 60.000 33.39 0.00 39.89 4.46
92 93 0.397816 CCCTCGAGGATCAAGGACCT 60.398 60.000 33.39 0.00 38.24 3.85
93 94 1.133450 CCCTCGAGGATCAAGGACCTA 60.133 57.143 33.39 0.00 38.24 3.08
94 95 2.235016 CCTCGAGGATCAAGGACCTAG 58.765 57.143 28.21 0.00 36.57 3.02
95 96 1.611491 CTCGAGGATCAAGGACCTAGC 59.389 57.143 3.91 0.00 36.57 3.42
96 97 0.676736 CGAGGATCAAGGACCTAGCC 59.323 60.000 0.00 0.00 36.57 3.93
97 98 1.052617 GAGGATCAAGGACCTAGCCC 58.947 60.000 0.00 0.00 36.57 5.19
98 99 0.343372 AGGATCAAGGACCTAGCCCA 59.657 55.000 0.00 0.00 34.47 5.36
99 100 1.061033 AGGATCAAGGACCTAGCCCAT 60.061 52.381 0.00 0.00 34.47 4.00
100 101 1.072965 GGATCAAGGACCTAGCCCATG 59.927 57.143 0.00 0.00 0.00 3.66
101 102 1.072965 GATCAAGGACCTAGCCCATGG 59.927 57.143 4.14 4.14 0.00 3.66
102 103 0.253160 TCAAGGACCTAGCCCATGGT 60.253 55.000 11.73 0.00 39.60 3.55
103 104 0.625849 CAAGGACCTAGCCCATGGTT 59.374 55.000 11.73 0.66 36.59 3.67
104 105 0.625849 AAGGACCTAGCCCATGGTTG 59.374 55.000 11.73 0.00 36.59 3.77
105 106 0.550147 AGGACCTAGCCCATGGTTGT 60.550 55.000 11.73 0.00 36.59 3.32
106 107 1.209621 GGACCTAGCCCATGGTTGTA 58.790 55.000 11.73 0.00 36.59 2.41
107 108 1.134189 GGACCTAGCCCATGGTTGTAC 60.134 57.143 11.73 0.00 36.59 2.90
108 109 1.838077 GACCTAGCCCATGGTTGTACT 59.162 52.381 11.73 2.51 36.59 2.73
109 110 1.559682 ACCTAGCCCATGGTTGTACTG 59.440 52.381 11.73 0.00 31.62 2.74
110 111 1.837439 CCTAGCCCATGGTTGTACTGA 59.163 52.381 11.73 0.00 0.00 3.41
111 112 2.238646 CCTAGCCCATGGTTGTACTGAA 59.761 50.000 11.73 0.00 0.00 3.02
112 113 2.200373 AGCCCATGGTTGTACTGAAC 57.800 50.000 11.73 0.00 0.00 3.18
113 114 1.423541 AGCCCATGGTTGTACTGAACA 59.576 47.619 11.73 0.00 35.88 3.18
114 115 1.539827 GCCCATGGTTGTACTGAACAC 59.460 52.381 11.73 0.00 38.00 3.32
115 116 2.159382 CCCATGGTTGTACTGAACACC 58.841 52.381 11.73 0.00 38.00 4.16
116 117 2.159382 CCATGGTTGTACTGAACACCC 58.841 52.381 2.57 0.00 41.00 4.61
117 118 1.804151 CATGGTTGTACTGAACACCCG 59.196 52.381 0.00 0.00 43.49 5.28
118 119 1.121378 TGGTTGTACTGAACACCCGA 58.879 50.000 0.00 0.00 43.49 5.14
119 120 1.695242 TGGTTGTACTGAACACCCGAT 59.305 47.619 0.00 0.00 43.49 4.18
120 121 2.898612 TGGTTGTACTGAACACCCGATA 59.101 45.455 0.00 0.00 43.49 2.92
121 122 3.056393 TGGTTGTACTGAACACCCGATAG 60.056 47.826 0.00 0.00 43.49 2.08
122 123 3.518590 GTTGTACTGAACACCCGATAGG 58.481 50.000 0.00 0.00 45.28 2.57
123 124 1.479323 TGTACTGAACACCCGATAGGC 59.521 52.381 0.00 0.00 44.88 3.93
124 125 2.886809 TGTACTGAACACCCGATAGGCT 60.887 50.000 0.00 0.00 44.88 4.58
125 126 6.417675 TTGTACTGAACACCCGATAGGCTG 62.418 50.000 0.00 0.00 44.87 4.85
143 144 1.789464 CTGATGAAGCCGAGTATTCGC 59.211 52.381 1.48 0.00 45.38 4.70
144 145 1.140816 GATGAAGCCGAGTATTCGCC 58.859 55.000 1.48 0.00 45.38 5.54
145 146 0.249911 ATGAAGCCGAGTATTCGCCC 60.250 55.000 1.48 0.00 45.38 6.13
146 147 1.949631 GAAGCCGAGTATTCGCCCG 60.950 63.158 1.48 0.00 45.38 6.13
147 148 2.624437 GAAGCCGAGTATTCGCCCGT 62.624 60.000 1.48 0.00 45.38 5.28
148 149 2.624437 AAGCCGAGTATTCGCCCGTC 62.624 60.000 1.48 0.00 45.38 4.79
149 150 2.027169 CCGAGTATTCGCCCGTCC 59.973 66.667 1.48 0.00 45.38 4.79
150 151 2.353145 CGAGTATTCGCCCGTCCG 60.353 66.667 0.00 0.00 40.36 4.79
151 152 2.657620 GAGTATTCGCCCGTCCGC 60.658 66.667 0.00 0.00 0.00 5.54
152 153 3.135056 GAGTATTCGCCCGTCCGCT 62.135 63.158 0.00 0.00 0.00 5.52
153 154 2.657620 GTATTCGCCCGTCCGCTC 60.658 66.667 0.00 0.00 0.00 5.03
154 155 3.142162 TATTCGCCCGTCCGCTCA 61.142 61.111 0.00 0.00 0.00 4.26
155 156 2.712944 TATTCGCCCGTCCGCTCAA 61.713 57.895 0.00 0.00 0.00 3.02
156 157 2.622903 TATTCGCCCGTCCGCTCAAG 62.623 60.000 0.00 0.00 0.00 3.02
159 160 4.162690 GCCCGTCCGCTCAAGGAT 62.163 66.667 0.00 0.00 43.04 3.24
160 161 2.107141 CCCGTCCGCTCAAGGATC 59.893 66.667 0.00 0.00 43.04 3.36
161 162 2.107141 CCGTCCGCTCAAGGATCC 59.893 66.667 2.48 2.48 43.04 3.36
162 163 2.721167 CCGTCCGCTCAAGGATCCA 61.721 63.158 15.82 0.00 43.04 3.41
163 164 1.443407 CGTCCGCTCAAGGATCCAT 59.557 57.895 15.82 0.00 43.04 3.41
164 165 0.598680 CGTCCGCTCAAGGATCCATC 60.599 60.000 15.82 0.00 43.04 3.51
165 166 0.755686 GTCCGCTCAAGGATCCATCT 59.244 55.000 15.82 0.00 43.04 2.90
166 167 1.964223 GTCCGCTCAAGGATCCATCTA 59.036 52.381 15.82 0.00 43.04 1.98
167 168 2.365617 GTCCGCTCAAGGATCCATCTAA 59.634 50.000 15.82 0.00 43.04 2.10
168 169 3.007398 GTCCGCTCAAGGATCCATCTAAT 59.993 47.826 15.82 0.00 43.04 1.73
169 170 3.007290 TCCGCTCAAGGATCCATCTAATG 59.993 47.826 15.82 3.13 34.92 1.90
170 171 6.079858 TCCGCTCAAGGATCCATCTAATGG 62.080 50.000 15.82 7.47 42.84 3.16
181 182 3.482156 CATCTAATGGAGTCAGGGGTG 57.518 52.381 0.00 0.00 0.00 4.61
182 183 1.204146 TCTAATGGAGTCAGGGGTGC 58.796 55.000 0.00 0.00 0.00 5.01
183 184 0.181350 CTAATGGAGTCAGGGGTGCC 59.819 60.000 0.00 0.00 0.00 5.01
184 185 1.279025 TAATGGAGTCAGGGGTGCCC 61.279 60.000 0.00 0.00 45.90 5.36
194 195 4.195334 GGGTGCCCGCATGGAGAT 62.195 66.667 0.00 0.00 37.49 2.75
195 196 2.592861 GGTGCCCGCATGGAGATC 60.593 66.667 0.00 0.00 37.49 2.75
196 197 2.969238 GTGCCCGCATGGAGATCG 60.969 66.667 0.00 0.00 37.49 3.69
197 198 3.469970 TGCCCGCATGGAGATCGT 61.470 61.111 0.00 0.00 37.49 3.73
198 199 2.663188 GCCCGCATGGAGATCGTC 60.663 66.667 0.00 0.00 37.49 4.20
199 200 2.814604 CCCGCATGGAGATCGTCA 59.185 61.111 0.00 0.00 37.49 4.35
200 201 1.300465 CCCGCATGGAGATCGTCAG 60.300 63.158 0.00 0.00 37.49 3.51
201 202 1.953138 CCGCATGGAGATCGTCAGC 60.953 63.158 0.00 0.00 37.49 4.26
202 203 1.067084 CGCATGGAGATCGTCAGCT 59.933 57.895 0.00 0.00 0.00 4.24
203 204 0.312102 CGCATGGAGATCGTCAGCTA 59.688 55.000 0.00 0.00 0.00 3.32
204 205 1.777101 GCATGGAGATCGTCAGCTAC 58.223 55.000 0.00 0.00 0.00 3.58
212 213 2.494445 CGTCAGCTACGCCATGGA 59.506 61.111 18.40 0.00 46.10 3.41
213 214 1.589993 CGTCAGCTACGCCATGGAG 60.590 63.158 18.40 16.40 46.10 3.86
214 215 1.517832 GTCAGCTACGCCATGGAGT 59.482 57.895 25.05 25.05 0.00 3.85
215 216 0.528684 GTCAGCTACGCCATGGAGTC 60.529 60.000 25.43 11.76 0.00 3.36
216 217 1.589993 CAGCTACGCCATGGAGTCG 60.590 63.158 25.43 19.60 0.00 4.18
217 218 2.962253 GCTACGCCATGGAGTCGC 60.962 66.667 25.43 25.31 30.96 5.19
218 219 2.279517 CTACGCCATGGAGTCGCC 60.280 66.667 25.43 0.00 37.10 5.54
219 220 2.758327 TACGCCATGGAGTCGCCT 60.758 61.111 25.43 2.28 37.63 5.52
220 221 1.452953 CTACGCCATGGAGTCGCCTA 61.453 60.000 25.43 6.11 37.63 3.93
221 222 0.826256 TACGCCATGGAGTCGCCTAT 60.826 55.000 25.43 0.68 37.63 2.57
222 223 1.665916 CGCCATGGAGTCGCCTATG 60.666 63.158 18.40 0.00 37.63 2.23
223 224 1.963338 GCCATGGAGTCGCCTATGC 60.963 63.158 18.40 0.00 37.63 3.14
224 225 1.447217 CCATGGAGTCGCCTATGCA 59.553 57.895 5.56 0.00 37.32 3.96
225 226 0.179048 CCATGGAGTCGCCTATGCAA 60.179 55.000 5.56 0.00 37.32 4.08
226 227 1.224075 CATGGAGTCGCCTATGCAAG 58.776 55.000 0.00 0.00 37.32 4.01
234 235 4.567318 CCTATGCAAGGCCAGGAC 57.433 61.111 5.01 0.00 38.97 3.85
235 236 1.524621 CCTATGCAAGGCCAGGACG 60.525 63.158 5.01 0.00 38.97 4.79
236 237 1.221840 CTATGCAAGGCCAGGACGT 59.778 57.895 5.01 0.00 0.00 4.34
237 238 0.811616 CTATGCAAGGCCAGGACGTC 60.812 60.000 7.13 7.13 0.00 4.34
238 239 2.572095 TATGCAAGGCCAGGACGTCG 62.572 60.000 9.92 0.00 0.00 5.12
239 240 4.681978 GCAAGGCCAGGACGTCGT 62.682 66.667 9.92 7.31 0.00 4.34
240 241 2.738521 CAAGGCCAGGACGTCGTG 60.739 66.667 27.08 27.08 0.00 4.35
246 247 4.794164 CAGGACGTCGTGGATCAG 57.206 61.111 26.51 3.69 0.00 2.90
247 248 2.180674 CAGGACGTCGTGGATCAGA 58.819 57.895 26.51 0.00 0.00 3.27
248 249 0.741326 CAGGACGTCGTGGATCAGAT 59.259 55.000 26.51 0.00 0.00 2.90
249 250 0.741326 AGGACGTCGTGGATCAGATG 59.259 55.000 10.45 0.00 0.00 2.90
250 251 0.456221 GGACGTCGTGGATCAGATGT 59.544 55.000 9.92 8.92 39.10 3.06
251 252 1.135083 GGACGTCGTGGATCAGATGTT 60.135 52.381 9.92 0.00 36.81 2.71
252 253 2.186076 GACGTCGTGGATCAGATGTTC 58.814 52.381 0.63 3.09 36.81 3.18
253 254 1.544246 ACGTCGTGGATCAGATGTTCA 59.456 47.619 0.00 0.00 33.24 3.18
254 255 2.188524 CGTCGTGGATCAGATGTTCAG 58.811 52.381 0.00 0.00 0.00 3.02
255 256 2.416027 CGTCGTGGATCAGATGTTCAGT 60.416 50.000 0.00 0.00 0.00 3.41
256 257 3.181500 CGTCGTGGATCAGATGTTCAGTA 60.181 47.826 0.00 0.00 0.00 2.74
257 258 4.106197 GTCGTGGATCAGATGTTCAGTAC 58.894 47.826 0.00 0.00 0.00 2.73
258 259 3.761752 TCGTGGATCAGATGTTCAGTACA 59.238 43.478 0.00 0.00 41.97 2.90
259 260 4.219725 TCGTGGATCAGATGTTCAGTACAA 59.780 41.667 0.00 0.00 40.89 2.41
260 261 4.327357 CGTGGATCAGATGTTCAGTACAAC 59.673 45.833 0.00 0.00 40.89 3.32
261 262 4.631813 GTGGATCAGATGTTCAGTACAACC 59.368 45.833 0.00 0.00 40.89 3.77
262 263 4.285775 TGGATCAGATGTTCAGTACAACCA 59.714 41.667 0.00 0.00 40.89 3.67
263 264 5.045651 TGGATCAGATGTTCAGTACAACCAT 60.046 40.000 0.00 0.00 40.89 3.55
264 265 5.295292 GGATCAGATGTTCAGTACAACCATG 59.705 44.000 0.00 0.00 40.89 3.66
265 266 5.482163 TCAGATGTTCAGTACAACCATGA 57.518 39.130 0.00 0.00 40.89 3.07
266 267 5.482006 TCAGATGTTCAGTACAACCATGAG 58.518 41.667 0.00 0.00 40.89 2.90
267 268 4.093998 CAGATGTTCAGTACAACCATGAGC 59.906 45.833 0.00 0.00 40.89 4.26
268 269 3.769739 TGTTCAGTACAACCATGAGCT 57.230 42.857 0.00 0.00 32.64 4.09
269 270 4.882842 TGTTCAGTACAACCATGAGCTA 57.117 40.909 0.00 0.00 32.64 3.32
270 271 4.820897 TGTTCAGTACAACCATGAGCTAG 58.179 43.478 0.00 0.00 32.64 3.42
271 272 4.184629 GTTCAGTACAACCATGAGCTAGG 58.815 47.826 0.00 0.00 0.00 3.02
272 273 3.441101 TCAGTACAACCATGAGCTAGGT 58.559 45.455 0.00 0.00 40.61 3.08
273 274 3.447586 TCAGTACAACCATGAGCTAGGTC 59.552 47.826 15.12 15.12 37.07 3.85
274 275 2.766828 AGTACAACCATGAGCTAGGTCC 59.233 50.000 18.90 2.26 37.07 4.46
275 276 1.958288 ACAACCATGAGCTAGGTCCT 58.042 50.000 18.90 6.69 37.07 3.85
276 277 2.269940 ACAACCATGAGCTAGGTCCTT 58.730 47.619 18.90 4.17 37.07 3.36
277 278 2.026822 ACAACCATGAGCTAGGTCCTTG 60.027 50.000 18.90 15.31 37.07 3.61
278 279 2.237143 CAACCATGAGCTAGGTCCTTGA 59.763 50.000 18.90 0.68 37.07 3.02
279 280 2.769209 ACCATGAGCTAGGTCCTTGAT 58.231 47.619 18.90 3.19 30.79 2.57
280 281 2.703007 ACCATGAGCTAGGTCCTTGATC 59.297 50.000 18.90 11.16 30.79 2.92
281 282 2.038295 CCATGAGCTAGGTCCTTGATCC 59.962 54.545 18.90 0.00 0.00 3.36
282 283 2.550277 TGAGCTAGGTCCTTGATCCA 57.450 50.000 18.90 2.26 0.00 3.41
283 284 2.392662 TGAGCTAGGTCCTTGATCCAG 58.607 52.381 18.90 0.00 0.00 3.86
284 285 2.292521 TGAGCTAGGTCCTTGATCCAGT 60.293 50.000 18.90 0.00 0.00 4.00
285 286 2.769095 GAGCTAGGTCCTTGATCCAGTT 59.231 50.000 10.97 0.00 0.00 3.16
286 287 2.503356 AGCTAGGTCCTTGATCCAGTTG 59.497 50.000 4.32 0.00 0.00 3.16
287 288 2.237392 GCTAGGTCCTTGATCCAGTTGT 59.763 50.000 4.32 0.00 0.00 3.32
288 289 3.680196 GCTAGGTCCTTGATCCAGTTGTC 60.680 52.174 4.32 0.00 0.00 3.18
289 290 1.276421 AGGTCCTTGATCCAGTTGTCG 59.724 52.381 0.00 0.00 0.00 4.35
290 291 1.002087 GGTCCTTGATCCAGTTGTCGT 59.998 52.381 0.00 0.00 0.00 4.34
291 292 2.338500 GTCCTTGATCCAGTTGTCGTC 58.662 52.381 0.00 0.00 0.00 4.20
292 293 2.028930 GTCCTTGATCCAGTTGTCGTCT 60.029 50.000 0.00 0.00 0.00 4.18
293 294 2.029020 TCCTTGATCCAGTTGTCGTCTG 60.029 50.000 0.00 0.00 0.00 3.51
294 295 1.728971 CTTGATCCAGTTGTCGTCTGC 59.271 52.381 0.00 0.00 0.00 4.26
295 296 0.037326 TGATCCAGTTGTCGTCTGCC 60.037 55.000 0.00 0.00 0.00 4.85
296 297 0.037326 GATCCAGTTGTCGTCTGCCA 60.037 55.000 0.00 0.00 0.00 4.92
297 298 0.036952 ATCCAGTTGTCGTCTGCCAG 60.037 55.000 0.00 0.00 0.00 4.85
298 299 1.669115 CCAGTTGTCGTCTGCCAGG 60.669 63.158 0.00 0.00 0.00 4.45
299 300 1.669115 CAGTTGTCGTCTGCCAGGG 60.669 63.158 0.00 0.00 0.00 4.45
300 301 3.050275 GTTGTCGTCTGCCAGGGC 61.050 66.667 2.62 2.62 42.35 5.19
301 302 4.329545 TTGTCGTCTGCCAGGGCC 62.330 66.667 8.02 0.00 41.09 5.80
303 304 4.459089 GTCGTCTGCCAGGGCCTC 62.459 72.222 0.95 0.00 41.09 4.70
306 307 3.334054 GTCTGCCAGGGCCTCCTT 61.334 66.667 0.95 0.00 42.67 3.36
307 308 3.011517 TCTGCCAGGGCCTCCTTC 61.012 66.667 0.95 0.00 42.67 3.46
308 309 3.333219 CTGCCAGGGCCTCCTTCA 61.333 66.667 0.95 0.00 42.67 3.02
309 310 3.635268 CTGCCAGGGCCTCCTTCAC 62.635 68.421 0.95 0.00 42.67 3.18
310 311 4.432741 GCCAGGGCCTCCTTCACC 62.433 72.222 0.95 0.00 42.67 4.02
311 312 4.101448 CCAGGGCCTCCTTCACCG 62.101 72.222 0.95 0.00 42.67 4.94
312 313 4.785453 CAGGGCCTCCTTCACCGC 62.785 72.222 0.95 0.00 42.67 5.68
316 317 4.785453 GCCTCCTTCACCGCCCTG 62.785 72.222 0.00 0.00 0.00 4.45
317 318 3.322466 CCTCCTTCACCGCCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
318 319 2.750350 CTCCTTCACCGCCCTGTT 59.250 61.111 0.00 0.00 0.00 3.16
319 320 1.376037 CTCCTTCACCGCCCTGTTC 60.376 63.158 0.00 0.00 0.00 3.18
320 321 1.831652 CTCCTTCACCGCCCTGTTCT 61.832 60.000 0.00 0.00 0.00 3.01
321 322 1.073199 CCTTCACCGCCCTGTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
322 323 0.537371 CCTTCACCGCCCTGTTCTTT 60.537 55.000 0.00 0.00 0.00 2.52
323 324 0.875059 CTTCACCGCCCTGTTCTTTC 59.125 55.000 0.00 0.00 0.00 2.62
324 325 0.472471 TTCACCGCCCTGTTCTTTCT 59.528 50.000 0.00 0.00 0.00 2.52
325 326 0.472471 TCACCGCCCTGTTCTTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
326 327 0.875059 CACCGCCCTGTTCTTTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
327 328 0.602905 ACCGCCCTGTTCTTTCTTCG 60.603 55.000 0.00 0.00 0.00 3.79
328 329 1.298859 CCGCCCTGTTCTTTCTTCGG 61.299 60.000 0.00 0.00 0.00 4.30
329 330 1.298859 CGCCCTGTTCTTTCTTCGGG 61.299 60.000 0.00 0.00 34.79 5.14
330 331 2.556286 CCCTGTTCTTTCTTCGGGC 58.444 57.895 0.00 0.00 0.00 6.13
331 332 0.250727 CCCTGTTCTTTCTTCGGGCA 60.251 55.000 0.00 0.00 0.00 5.36
332 333 1.614317 CCCTGTTCTTTCTTCGGGCAT 60.614 52.381 0.00 0.00 0.00 4.40
333 334 1.470098 CCTGTTCTTTCTTCGGGCATG 59.530 52.381 0.00 0.00 0.00 4.06
334 335 0.881118 TGTTCTTTCTTCGGGCATGC 59.119 50.000 9.90 9.90 0.00 4.06
335 336 0.171231 GTTCTTTCTTCGGGCATGCC 59.829 55.000 29.47 29.47 0.00 4.40
336 337 1.305219 TTCTTTCTTCGGGCATGCCG 61.305 55.000 29.90 23.70 36.85 5.69
337 338 1.745115 CTTTCTTCGGGCATGCCGA 60.745 57.895 29.90 25.48 37.94 5.54
338 339 1.709147 CTTTCTTCGGGCATGCCGAG 61.709 60.000 29.90 24.93 40.77 4.63
339 340 4.838152 TCTTCGGGCATGCCGAGC 62.838 66.667 29.90 15.68 40.77 5.03
353 354 4.547367 GAGCCAGGCGCGGGTATT 62.547 66.667 16.81 4.79 44.76 1.89
354 355 4.856801 AGCCAGGCGCGGGTATTG 62.857 66.667 16.81 1.88 44.76 1.90
356 357 4.856801 CCAGGCGCGGGTATTGCT 62.857 66.667 8.83 0.00 0.00 3.91
357 358 3.576356 CAGGCGCGGGTATTGCTG 61.576 66.667 8.83 0.00 0.00 4.41
358 359 4.856801 AGGCGCGGGTATTGCTGG 62.857 66.667 8.83 0.00 0.00 4.85
362 363 4.849310 GCGGGTATTGCTGGGCGA 62.849 66.667 0.00 0.00 0.00 5.54
363 364 2.588877 CGGGTATTGCTGGGCGAG 60.589 66.667 0.00 0.00 0.00 5.03
395 396 2.204034 TCCAGTGGGAGTGCCAGA 59.796 61.111 9.92 0.00 38.64 3.86
396 397 1.461268 TCCAGTGGGAGTGCCAGAA 60.461 57.895 9.92 0.00 38.64 3.02
397 398 1.002868 CCAGTGGGAGTGCCAGAAG 60.003 63.158 2.34 0.00 35.59 2.85
398 399 1.002868 CAGTGGGAGTGCCAGAAGG 60.003 63.158 2.34 0.00 35.15 3.46
399 400 1.152030 AGTGGGAGTGCCAGAAGGA 60.152 57.895 2.34 0.00 36.89 3.36
400 401 1.003233 GTGGGAGTGCCAGAAGGAC 60.003 63.158 2.34 0.00 36.89 3.85
401 402 2.266055 GGGAGTGCCAGAAGGACG 59.734 66.667 0.00 0.00 36.89 4.79
402 403 2.435059 GGAGTGCCAGAAGGACGC 60.435 66.667 0.00 0.00 36.89 5.19
403 404 2.659610 GAGTGCCAGAAGGACGCT 59.340 61.111 0.00 0.00 36.89 5.07
404 405 1.739562 GAGTGCCAGAAGGACGCTG 60.740 63.158 0.00 0.00 36.89 5.18
405 406 2.031163 GTGCCAGAAGGACGCTGT 59.969 61.111 0.00 0.00 36.89 4.40
406 407 2.029844 GTGCCAGAAGGACGCTGTC 61.030 63.158 0.00 0.79 36.89 3.51
407 408 2.811317 GCCAGAAGGACGCTGTCG 60.811 66.667 0.00 0.00 36.89 4.35
408 409 2.811317 CCAGAAGGACGCTGTCGC 60.811 66.667 0.00 0.00 39.84 5.19
425 426 2.661537 CGCCATCGCCGATGCTAA 60.662 61.111 21.29 0.00 38.59 3.09
426 427 2.939022 GCCATCGCCGATGCTAAC 59.061 61.111 21.29 6.72 38.59 2.34
427 428 2.607892 GCCATCGCCGATGCTAACC 61.608 63.158 21.29 3.31 38.59 2.85
428 429 2.310233 CCATCGCCGATGCTAACCG 61.310 63.158 21.29 3.03 38.59 4.44
429 430 1.299850 CATCGCCGATGCTAACCGA 60.300 57.895 14.88 0.00 33.17 4.69
430 431 1.007271 ATCGCCGATGCTAACCGAG 60.007 57.895 0.00 0.00 34.43 4.63
431 432 2.421877 ATCGCCGATGCTAACCGAGG 62.422 60.000 0.00 0.00 34.43 4.63
432 433 2.499685 GCCGATGCTAACCGAGGT 59.500 61.111 0.00 0.00 33.53 3.85
433 434 1.883084 GCCGATGCTAACCGAGGTG 60.883 63.158 0.00 0.00 33.53 4.00
434 435 1.227263 CCGATGCTAACCGAGGTGG 60.227 63.158 0.00 0.00 46.41 4.61
435 436 1.883084 CGATGCTAACCGAGGTGGC 60.883 63.158 11.67 11.67 43.94 5.01
436 437 1.523938 GATGCTAACCGAGGTGGCC 60.524 63.158 14.59 0.00 43.94 5.36
437 438 3.385749 ATGCTAACCGAGGTGGCCG 62.386 63.158 14.59 0.00 43.94 6.13
438 439 4.078516 GCTAACCGAGGTGGCCGT 62.079 66.667 0.00 0.00 43.94 5.68
439 440 2.183555 CTAACCGAGGTGGCCGTC 59.816 66.667 0.00 0.00 43.94 4.79
440 441 3.695022 CTAACCGAGGTGGCCGTCG 62.695 68.421 13.54 13.54 45.85 5.12
444 445 4.351938 CGAGGTGGCCGTCGTGAA 62.352 66.667 12.54 0.00 42.42 3.18
445 446 2.432628 GAGGTGGCCGTCGTGAAG 60.433 66.667 0.00 0.00 0.00 3.02
446 447 2.915659 AGGTGGCCGTCGTGAAGA 60.916 61.111 0.00 0.00 0.00 2.87
447 448 2.432628 GGTGGCCGTCGTGAAGAG 60.433 66.667 0.00 0.00 0.00 2.85
448 449 2.432628 GTGGCCGTCGTGAAGAGG 60.433 66.667 0.00 0.00 34.70 3.69
454 455 1.803943 CGTCGTGAAGAGGGAGAGG 59.196 63.158 0.00 0.00 0.00 3.69
455 456 0.961358 CGTCGTGAAGAGGGAGAGGT 60.961 60.000 0.00 0.00 0.00 3.85
456 457 0.812549 GTCGTGAAGAGGGAGAGGTC 59.187 60.000 0.00 0.00 0.00 3.85
457 458 0.677098 TCGTGAAGAGGGAGAGGTCG 60.677 60.000 0.00 0.00 0.00 4.79
458 459 0.961358 CGTGAAGAGGGAGAGGTCGT 60.961 60.000 0.00 0.00 0.00 4.34
459 460 0.812549 GTGAAGAGGGAGAGGTCGTC 59.187 60.000 0.00 0.00 0.00 4.20
460 461 0.677098 TGAAGAGGGAGAGGTCGTCG 60.677 60.000 0.00 0.00 0.00 5.12
461 462 0.677414 GAAGAGGGAGAGGTCGTCGT 60.677 60.000 0.00 0.00 0.00 4.34
462 463 0.677414 AAGAGGGAGAGGTCGTCGTC 60.677 60.000 0.00 0.00 0.00 4.20
463 464 1.376942 GAGGGAGAGGTCGTCGTCA 60.377 63.158 5.24 0.00 0.00 4.35
464 465 0.748729 GAGGGAGAGGTCGTCGTCAT 60.749 60.000 5.24 0.00 0.00 3.06
465 466 0.323542 AGGGAGAGGTCGTCGTCATT 60.324 55.000 5.24 0.00 0.00 2.57
466 467 0.179134 GGGAGAGGTCGTCGTCATTG 60.179 60.000 5.24 0.00 0.00 2.82
467 468 0.802607 GGAGAGGTCGTCGTCATTGC 60.803 60.000 5.24 0.00 0.00 3.56
513 514 2.989422 GGGACGATTTGTTTGACCAG 57.011 50.000 0.00 0.00 0.00 4.00
516 517 2.350772 GGACGATTTGTTTGACCAGCAG 60.351 50.000 0.00 0.00 0.00 4.24
551 552 7.112122 TCATTAGTGACATGGCTAAATTGTCT 58.888 34.615 0.00 0.00 40.29 3.41
573 574 7.488792 TGTCTTTGTTGACATTTTCTGATGTTG 59.511 33.333 0.00 0.00 41.43 3.33
648 733 4.758251 CACCGCCGCACATCTCCA 62.758 66.667 0.00 0.00 0.00 3.86
655 750 1.361668 CCGCACATCTCCACCGAAAG 61.362 60.000 0.00 0.00 0.00 2.62
694 850 3.423154 CGTCGGCTGGTTTCTGGC 61.423 66.667 0.00 0.00 0.00 4.85
697 859 2.217038 TCGGCTGGTTTCTGGCTCT 61.217 57.895 0.00 0.00 35.71 4.09
751 947 0.035725 GGTAACCCGTTAGCTTGGCT 60.036 55.000 9.07 0.00 43.41 4.75
754 989 3.134127 CCCGTTAGCTTGGCTGCC 61.134 66.667 12.87 12.87 40.10 4.85
757 992 1.375908 CGTTAGCTTGGCTGCCTCA 60.376 57.895 21.03 5.58 40.10 3.86
768 1003 1.670015 CTGCCTCAGCACTGTCTCA 59.330 57.895 0.00 0.00 46.52 3.27
771 1006 0.948141 GCCTCAGCACTGTCTCACAC 60.948 60.000 0.00 0.00 39.53 3.82
772 1007 0.320247 CCTCAGCACTGTCTCACACC 60.320 60.000 0.00 0.00 0.00 4.16
773 1008 0.390492 CTCAGCACTGTCTCACACCA 59.610 55.000 0.00 0.00 0.00 4.17
776 1011 1.956170 GCACTGTCTCACACCACCG 60.956 63.158 0.00 0.00 0.00 4.94
777 1012 1.739667 CACTGTCTCACACCACCGA 59.260 57.895 0.00 0.00 0.00 4.69
783 1018 3.530910 CTCACACCACCGACCCACC 62.531 68.421 0.00 0.00 0.00 4.61
785 1020 4.892291 ACACCACCGACCCACCCT 62.892 66.667 0.00 0.00 0.00 4.34
786 1021 3.566210 CACCACCGACCCACCCTT 61.566 66.667 0.00 0.00 0.00 3.95
806 1061 1.639722 TCAGTTCCGTGGAGATTCCA 58.360 50.000 0.00 0.00 45.98 3.53
852 1133 3.196469 TGGTTCTATCTTCTGTGCCTCAG 59.804 47.826 0.33 0.33 44.85 3.35
908 1189 9.885743 CTTATTTATTTGCTTATTCGTTTGCAC 57.114 29.630 0.00 0.00 35.01 4.57
911 1192 2.697431 TGCTTATTCGTTTGCACCAC 57.303 45.000 0.00 0.00 0.00 4.16
962 1267 4.226620 TGGATTCTACAACCTAACCCCTTC 59.773 45.833 0.00 0.00 0.00 3.46
963 1268 4.384978 GGATTCTACAACCTAACCCCTTCC 60.385 50.000 0.00 0.00 0.00 3.46
968 1278 2.133359 AACCTAACCCCTTCCGTGGC 62.133 60.000 0.00 0.00 0.00 5.01
972 1282 1.917336 TAACCCCTTCCGTGGCCATC 61.917 60.000 9.72 1.29 0.00 3.51
1053 1363 1.397390 CCTGGGCAGCAAATGATCCC 61.397 60.000 0.00 0.00 37.49 3.85
1114 1432 1.021968 AAACACGCAACACTCCCTTC 58.978 50.000 0.00 0.00 0.00 3.46
1115 1433 0.818040 AACACGCAACACTCCCTTCC 60.818 55.000 0.00 0.00 0.00 3.46
1117 1435 2.147387 ACGCAACACTCCCTTCCCT 61.147 57.895 0.00 0.00 0.00 4.20
1118 1436 1.073199 CGCAACACTCCCTTCCCTT 59.927 57.895 0.00 0.00 0.00 3.95
1159 1477 3.689649 GGAAAAGTCAACGTGCCAGATAT 59.310 43.478 0.00 0.00 0.00 1.63
1160 1478 4.873827 GGAAAAGTCAACGTGCCAGATATA 59.126 41.667 0.00 0.00 0.00 0.86
1161 1479 5.006746 GGAAAAGTCAACGTGCCAGATATAG 59.993 44.000 0.00 0.00 0.00 1.31
1162 1480 5.339008 AAAGTCAACGTGCCAGATATAGA 57.661 39.130 0.00 0.00 0.00 1.98
1165 1483 4.342378 AGTCAACGTGCCAGATATAGACAT 59.658 41.667 0.00 0.00 0.00 3.06
1166 1484 4.681942 GTCAACGTGCCAGATATAGACATC 59.318 45.833 0.00 0.00 0.00 3.06
1167 1485 4.584743 TCAACGTGCCAGATATAGACATCT 59.415 41.667 0.00 0.00 35.60 2.90
1168 1486 5.768164 TCAACGTGCCAGATATAGACATCTA 59.232 40.000 0.00 0.00 33.41 1.98
1169 1487 5.630661 ACGTGCCAGATATAGACATCTAC 57.369 43.478 0.00 0.00 33.41 2.59
1170 1488 5.317808 ACGTGCCAGATATAGACATCTACT 58.682 41.667 0.00 0.00 33.41 2.57
1201 1660 6.759497 AGCCCAGTTATGTGTTTATCTTTC 57.241 37.500 0.00 0.00 0.00 2.62
1269 1735 8.774586 AGTTATTCATCGGTGTAAATTATGAGC 58.225 33.333 0.00 0.00 0.00 4.26
1282 1748 2.229675 TATGAGCAGACATCCTTGCG 57.770 50.000 0.00 0.00 0.00 4.85
1339 1832 8.182881 GTCTCACTTTCTTCTTATAACTAGCGA 58.817 37.037 0.00 0.00 0.00 4.93
1340 1842 8.182881 TCTCACTTTCTTCTTATAACTAGCGAC 58.817 37.037 0.00 0.00 0.00 5.19
1502 2008 3.691609 CCTGGGTAAGCTTTTCAGATCAC 59.308 47.826 18.72 4.55 0.00 3.06
1510 2016 7.965107 GGTAAGCTTTTCAGATCACTGTATTTG 59.035 37.037 3.20 0.00 43.81 2.32
1514 2024 8.078596 AGCTTTTCAGATCACTGTATTTGTTTC 58.921 33.333 0.00 0.00 43.81 2.78
1547 2057 5.747951 TGGGAACAACAAATGCATTTTTC 57.252 34.783 21.95 20.39 37.44 2.29
1548 2058 4.578105 TGGGAACAACAAATGCATTTTTCC 59.422 37.500 29.38 29.38 37.44 3.13
1568 2078 1.812571 CCTTTCTGTTGATTGACCCCG 59.187 52.381 0.00 0.00 0.00 5.73
1581 2091 3.159213 TGACCCCGTTTAGTCACTAGA 57.841 47.619 0.00 0.00 38.07 2.43
1584 2094 4.159135 TGACCCCGTTTAGTCACTAGAATC 59.841 45.833 0.00 0.00 38.07 2.52
1590 2104 6.264088 CCGTTTAGTCACTAGAATCCTGTAC 58.736 44.000 0.00 0.00 0.00 2.90
1591 2105 6.095160 CCGTTTAGTCACTAGAATCCTGTACT 59.905 42.308 0.00 0.00 0.00 2.73
1592 2106 7.281774 CCGTTTAGTCACTAGAATCCTGTACTA 59.718 40.741 0.00 0.00 0.00 1.82
1625 2139 7.870588 GGTTTATCTGCTAACCTACTATTCG 57.129 40.000 0.00 0.00 40.50 3.34
1668 2190 1.672145 GCTGGAGTTGTAACCGAGGTC 60.672 57.143 0.00 0.00 0.00 3.85
1682 2204 2.654802 AGGTCGGTTCAGACGTCAT 58.345 52.632 19.50 0.00 41.81 3.06
1685 2207 0.242825 GTCGGTTCAGACGTCATGGA 59.757 55.000 19.50 9.38 0.00 3.41
1755 2277 1.267532 CGTGACTGTGACAACTGCAAC 60.268 52.381 0.00 0.00 0.00 4.17
1883 2405 4.343814 TGAACGGTATGGATGCATTCTCTA 59.656 41.667 4.56 0.00 0.00 2.43
1887 2409 4.021981 CGGTATGGATGCATTCTCTACTGA 60.022 45.833 16.34 0.00 0.00 3.41
1917 2531 8.722480 TCTGAATTTGGTGTAGATTGTCTATG 57.278 34.615 0.00 0.00 30.76 2.23
1918 2532 8.321353 TCTGAATTTGGTGTAGATTGTCTATGT 58.679 33.333 0.00 0.00 30.76 2.29
1919 2533 8.492673 TGAATTTGGTGTAGATTGTCTATGTC 57.507 34.615 0.00 0.00 30.76 3.06
1920 2534 7.552687 TGAATTTGGTGTAGATTGTCTATGTCC 59.447 37.037 0.00 0.00 30.76 4.02
1921 2535 6.367374 TTTGGTGTAGATTGTCTATGTCCA 57.633 37.500 0.00 0.00 30.76 4.02
2084 2704 6.072119 GGATCACTGTGTATACACCGATGATA 60.072 42.308 28.70 14.48 45.88 2.15
2111 2731 2.380064 ACATGAACCAGCCAGGAAAA 57.620 45.000 0.00 0.00 41.22 2.29
2301 2921 9.213777 AGATGGAGGTACTGAACATCTTTAATA 57.786 33.333 13.33 0.00 43.61 0.98
2405 3058 7.669427 TGAGAAAACATAAATGCACAAAGGAT 58.331 30.769 0.00 0.00 0.00 3.24
2413 3066 2.574006 TGCACAAAGGATCAGAGCTT 57.426 45.000 0.00 0.00 0.00 3.74
2433 3089 6.169094 AGCTTATTATGCAATCGATAGTGCT 58.831 36.000 19.80 10.14 41.48 4.40
2480 3712 9.155975 GAATTCTGCTTGTTATTCTTCTCACTA 57.844 33.333 0.00 0.00 0.00 2.74
2607 3840 1.634702 ATCTCGCGCTTCTGAAAGTC 58.365 50.000 5.56 0.00 34.79 3.01
2619 3852 2.073816 CTGAAAGTCCGTGGCGTAATT 58.926 47.619 0.00 0.00 0.00 1.40
2673 3906 2.950309 GCATCCTGCATCACTCAATCTT 59.050 45.455 0.00 0.00 44.26 2.40
2730 3963 7.728847 AAAATAATTGCAGGGTGAAAAGTTC 57.271 32.000 0.00 0.00 0.00 3.01
2731 3964 3.751479 AATTGCAGGGTGAAAAGTTCC 57.249 42.857 0.00 0.00 0.00 3.62
2732 3965 2.151502 TTGCAGGGTGAAAAGTTCCA 57.848 45.000 0.00 0.00 0.00 3.53
2783 4017 3.119602 TGAGACTGTATGCCGTAGAACAC 60.120 47.826 0.00 0.00 0.00 3.32
2825 4059 1.596220 GGTTCAAAACTTGGCGACGAC 60.596 52.381 0.00 0.00 0.00 4.34
2844 4078 7.678927 GCGACGACTTGAGGATATATAAGCATA 60.679 40.741 0.00 0.00 0.00 3.14
2846 4080 8.349568 ACGACTTGAGGATATATAAGCATACA 57.650 34.615 0.00 0.00 0.00 2.29
3000 4236 1.933853 GATGATAAACTTCTGCGCGGT 59.066 47.619 17.37 2.51 0.00 5.68
3207 4444 1.075542 CAAACAATCGCGGCTGACTA 58.924 50.000 6.13 0.00 0.00 2.59
3235 4474 3.356529 AGGGCTTTCCTCTGTAATGTG 57.643 47.619 0.00 0.00 44.06 3.21
3236 4475 2.912956 AGGGCTTTCCTCTGTAATGTGA 59.087 45.455 0.00 0.00 44.06 3.58
3280 4519 8.535592 CGTGATAGAAGATTGTTGTGAAGATAC 58.464 37.037 0.00 0.00 0.00 2.24
3402 4643 5.768980 ATGGTCAGATTGAAGAGAGGAAA 57.231 39.130 0.00 0.00 0.00 3.13
3403 4644 5.768980 TGGTCAGATTGAAGAGAGGAAAT 57.231 39.130 0.00 0.00 0.00 2.17
3404 4645 6.874278 TGGTCAGATTGAAGAGAGGAAATA 57.126 37.500 0.00 0.00 0.00 1.40
3405 4646 7.257790 TGGTCAGATTGAAGAGAGGAAATAA 57.742 36.000 0.00 0.00 0.00 1.40
3475 4716 9.990360 TTGGAAAATTTTACCTCACTTATTTCC 57.010 29.630 10.68 0.00 42.14 3.13
3520 4761 6.426980 TCACAGAAGCAAATATCATGTCAC 57.573 37.500 0.00 0.00 0.00 3.67
4020 5261 5.172934 GGACCTTTGACATATCGTACACAA 58.827 41.667 0.00 0.00 0.00 3.33
4091 5332 0.958091 GTGTTATGTGCACCTTGGCA 59.042 50.000 15.69 4.28 42.53 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.212935 CCCCGGGAAGATCAAGATGTT 59.787 52.381 26.32 0.00 0.00 2.71
1 2 0.839946 CCCCGGGAAGATCAAGATGT 59.160 55.000 26.32 0.00 0.00 3.06
2 3 0.536006 GCCCCGGGAAGATCAAGATG 60.536 60.000 26.32 0.30 0.00 2.90
3 4 1.709994 GGCCCCGGGAAGATCAAGAT 61.710 60.000 26.32 0.00 0.00 2.40
4 5 2.375345 GGCCCCGGGAAGATCAAGA 61.375 63.158 26.32 0.00 0.00 3.02
5 6 2.193248 GGCCCCGGGAAGATCAAG 59.807 66.667 26.32 2.75 0.00 3.02
6 7 3.416880 GGGCCCCGGGAAGATCAA 61.417 66.667 26.32 0.00 0.00 2.57
7 8 4.750695 TGGGCCCCGGGAAGATCA 62.751 66.667 26.32 10.02 0.00 2.92
8 9 3.416880 TTGGGCCCCGGGAAGATC 61.417 66.667 26.32 7.21 0.00 2.75
9 10 3.420482 CTTGGGCCCCGGGAAGAT 61.420 66.667 26.32 0.00 0.00 2.40
16 17 2.638981 TATGGAATGCTTGGGCCCCG 62.639 60.000 22.27 12.05 37.74 5.73
17 18 0.178924 ATATGGAATGCTTGGGCCCC 60.179 55.000 22.27 3.99 37.74 5.80
18 19 0.971386 CATATGGAATGCTTGGGCCC 59.029 55.000 17.59 17.59 37.74 5.80
19 20 1.999648 TCATATGGAATGCTTGGGCC 58.000 50.000 2.13 0.00 37.74 5.80
20 21 3.428532 AGATCATATGGAATGCTTGGGC 58.571 45.455 2.13 0.00 39.26 5.36
21 22 4.321750 GCAAGATCATATGGAATGCTTGGG 60.322 45.833 17.30 3.57 35.51 4.12
22 23 4.321750 GGCAAGATCATATGGAATGCTTGG 60.322 45.833 17.15 6.45 35.51 3.61
23 24 4.615223 CGGCAAGATCATATGGAATGCTTG 60.615 45.833 17.15 15.59 36.81 4.01
24 25 3.504906 CGGCAAGATCATATGGAATGCTT 59.495 43.478 17.15 6.96 35.34 3.91
25 26 3.079578 CGGCAAGATCATATGGAATGCT 58.920 45.455 17.15 2.40 35.34 3.79
26 27 3.076621 TCGGCAAGATCATATGGAATGC 58.923 45.455 2.13 8.67 34.67 3.56
27 28 5.694231 TTTCGGCAAGATCATATGGAATG 57.306 39.130 2.13 0.00 0.00 2.67
28 29 5.010012 GGTTTTCGGCAAGATCATATGGAAT 59.990 40.000 2.13 0.00 0.00 3.01
29 30 4.338118 GGTTTTCGGCAAGATCATATGGAA 59.662 41.667 2.13 0.00 0.00 3.53
30 31 3.882888 GGTTTTCGGCAAGATCATATGGA 59.117 43.478 2.13 0.00 0.00 3.41
31 32 3.303990 CGGTTTTCGGCAAGATCATATGG 60.304 47.826 2.13 0.00 34.75 2.74
32 33 3.559655 TCGGTTTTCGGCAAGATCATATG 59.440 43.478 0.00 0.00 39.77 1.78
33 34 3.804036 TCGGTTTTCGGCAAGATCATAT 58.196 40.909 0.00 0.00 39.77 1.78
34 35 3.194861 CTCGGTTTTCGGCAAGATCATA 58.805 45.455 0.00 0.00 39.77 2.15
35 36 2.009774 CTCGGTTTTCGGCAAGATCAT 58.990 47.619 0.00 0.00 39.77 2.45
36 37 1.438651 CTCGGTTTTCGGCAAGATCA 58.561 50.000 0.00 0.00 39.77 2.92
37 38 0.727398 CCTCGGTTTTCGGCAAGATC 59.273 55.000 0.00 0.00 39.77 2.75
38 39 0.323629 TCCTCGGTTTTCGGCAAGAT 59.676 50.000 0.00 0.00 39.77 2.40
39 40 0.601841 GTCCTCGGTTTTCGGCAAGA 60.602 55.000 0.00 0.00 39.77 3.02
40 41 1.866925 GTCCTCGGTTTTCGGCAAG 59.133 57.895 0.00 0.00 39.77 4.01
41 42 1.957186 CGTCCTCGGTTTTCGGCAA 60.957 57.895 0.00 0.00 39.77 4.52
42 43 2.356553 CGTCCTCGGTTTTCGGCA 60.357 61.111 0.00 0.00 39.77 5.69
43 44 2.356673 ACGTCCTCGGTTTTCGGC 60.357 61.111 0.00 0.00 41.85 5.54
44 45 0.389426 ATGACGTCCTCGGTTTTCGG 60.389 55.000 14.12 0.00 41.85 4.30
45 46 0.713883 CATGACGTCCTCGGTTTTCG 59.286 55.000 14.12 0.00 41.85 3.46
46 47 0.442699 GCATGACGTCCTCGGTTTTC 59.557 55.000 14.12 0.00 41.85 2.29
47 48 0.953960 GGCATGACGTCCTCGGTTTT 60.954 55.000 14.12 0.00 41.85 2.43
48 49 1.375523 GGCATGACGTCCTCGGTTT 60.376 57.895 14.12 0.00 41.85 3.27
49 50 2.264794 GGCATGACGTCCTCGGTT 59.735 61.111 14.12 0.00 41.85 4.44
50 51 3.771160 GGGCATGACGTCCTCGGT 61.771 66.667 14.12 0.00 41.85 4.69
55 56 1.745489 GTTCCAGGGCATGACGTCC 60.745 63.158 14.12 0.00 41.10 4.79
56 57 1.745489 GGTTCCAGGGCATGACGTC 60.745 63.158 9.11 9.11 0.00 4.34
57 58 2.351276 GGTTCCAGGGCATGACGT 59.649 61.111 0.00 0.00 0.00 4.34
58 59 2.438434 GGGTTCCAGGGCATGACG 60.438 66.667 0.00 0.00 0.00 4.35
59 60 1.077429 GAGGGTTCCAGGGCATGAC 60.077 63.158 0.00 0.00 0.00 3.06
60 61 2.669133 CGAGGGTTCCAGGGCATGA 61.669 63.158 0.00 0.00 0.00 3.07
61 62 2.124570 CGAGGGTTCCAGGGCATG 60.125 66.667 0.00 0.00 0.00 4.06
62 63 2.285368 TCGAGGGTTCCAGGGCAT 60.285 61.111 0.00 0.00 0.00 4.40
63 64 3.003173 CTCGAGGGTTCCAGGGCA 61.003 66.667 3.91 0.00 0.00 5.36
64 65 3.787001 CCTCGAGGGTTCCAGGGC 61.787 72.222 24.62 0.00 0.00 5.19
65 66 1.383248 ATCCTCGAGGGTTCCAGGG 60.383 63.158 30.80 3.16 36.25 4.45
66 67 0.687757 TGATCCTCGAGGGTTCCAGG 60.688 60.000 30.80 3.97 33.89 4.45
67 68 1.137872 CTTGATCCTCGAGGGTTCCAG 59.862 57.143 30.80 22.24 33.89 3.86
68 69 1.195115 CTTGATCCTCGAGGGTTCCA 58.805 55.000 30.80 16.65 33.89 3.53
69 70 0.466124 CCTTGATCCTCGAGGGTTCC 59.534 60.000 30.80 14.00 43.09 3.62
70 71 1.137282 GTCCTTGATCCTCGAGGGTTC 59.863 57.143 30.80 25.45 46.14 3.62
71 72 1.196012 GTCCTTGATCCTCGAGGGTT 58.804 55.000 30.80 18.81 46.14 4.11
72 73 0.688087 GGTCCTTGATCCTCGAGGGT 60.688 60.000 30.80 25.99 46.14 4.34
73 74 0.397816 AGGTCCTTGATCCTCGAGGG 60.398 60.000 30.80 14.33 46.14 4.30
75 76 1.611491 GCTAGGTCCTTGATCCTCGAG 59.389 57.143 5.13 5.13 35.51 4.04
76 77 1.693627 GCTAGGTCCTTGATCCTCGA 58.306 55.000 4.32 0.00 35.51 4.04
77 78 0.676736 GGCTAGGTCCTTGATCCTCG 59.323 60.000 4.32 0.00 35.51 4.63
78 79 1.052617 GGGCTAGGTCCTTGATCCTC 58.947 60.000 4.32 0.00 35.51 3.71
79 80 0.343372 TGGGCTAGGTCCTTGATCCT 59.657 55.000 4.32 0.00 37.80 3.24
80 81 1.072965 CATGGGCTAGGTCCTTGATCC 59.927 57.143 4.32 5.52 34.91 3.36
81 82 1.072965 CCATGGGCTAGGTCCTTGATC 59.927 57.143 2.85 0.00 34.91 2.92
82 83 1.143813 CCATGGGCTAGGTCCTTGAT 58.856 55.000 2.85 0.00 34.91 2.57
83 84 0.253160 ACCATGGGCTAGGTCCTTGA 60.253 55.000 18.09 0.00 34.91 3.02
84 85 0.625849 AACCATGGGCTAGGTCCTTG 59.374 55.000 18.09 0.00 37.07 3.61
85 86 0.625849 CAACCATGGGCTAGGTCCTT 59.374 55.000 18.09 0.00 37.07 3.36
86 87 0.550147 ACAACCATGGGCTAGGTCCT 60.550 55.000 18.09 0.00 37.07 3.85
87 88 1.134189 GTACAACCATGGGCTAGGTCC 60.134 57.143 18.09 0.00 37.07 4.46
88 89 1.838077 AGTACAACCATGGGCTAGGTC 59.162 52.381 18.09 0.24 37.07 3.85
89 90 1.559682 CAGTACAACCATGGGCTAGGT 59.440 52.381 18.09 8.80 40.61 3.08
90 91 1.837439 TCAGTACAACCATGGGCTAGG 59.163 52.381 18.09 2.76 0.00 3.02
91 92 3.270877 GTTCAGTACAACCATGGGCTAG 58.729 50.000 18.09 5.06 0.00 3.42
92 93 2.640332 TGTTCAGTACAACCATGGGCTA 59.360 45.455 18.09 0.00 32.64 3.93
93 94 1.423541 TGTTCAGTACAACCATGGGCT 59.576 47.619 18.09 0.00 32.64 5.19
94 95 1.539827 GTGTTCAGTACAACCATGGGC 59.460 52.381 18.09 0.54 38.80 5.36
95 96 2.159382 GGTGTTCAGTACAACCATGGG 58.841 52.381 18.09 0.85 38.59 4.00
101 102 3.518590 CCTATCGGGTGTTCAGTACAAC 58.481 50.000 0.00 0.00 44.07 3.32
102 103 2.093869 GCCTATCGGGTGTTCAGTACAA 60.094 50.000 0.00 0.00 38.80 2.41
103 104 1.479323 GCCTATCGGGTGTTCAGTACA 59.521 52.381 0.00 0.00 37.43 2.90
104 105 1.755380 AGCCTATCGGGTGTTCAGTAC 59.245 52.381 0.00 0.00 40.16 2.73
105 106 2.154567 AGCCTATCGGGTGTTCAGTA 57.845 50.000 0.00 0.00 40.16 2.74
106 107 2.992476 AGCCTATCGGGTGTTCAGT 58.008 52.632 0.00 0.00 40.16 3.41
113 114 0.394565 GCTTCATCAGCCTATCGGGT 59.605 55.000 0.00 0.00 43.65 5.28
114 115 3.223661 GCTTCATCAGCCTATCGGG 57.776 57.895 0.00 0.00 43.65 5.14
123 124 1.789464 GCGAATACTCGGCTTCATCAG 59.211 52.381 0.00 0.00 45.55 2.90
124 125 1.852942 GCGAATACTCGGCTTCATCA 58.147 50.000 0.00 0.00 45.55 3.07
132 133 2.027169 GGACGGGCGAATACTCGG 59.973 66.667 0.00 0.00 45.55 4.63
134 135 2.657620 GCGGACGGGCGAATACTC 60.658 66.667 0.00 0.00 0.00 2.59
135 136 3.135056 GAGCGGACGGGCGAATACT 62.135 63.158 0.00 0.00 38.18 2.12
136 137 2.657620 GAGCGGACGGGCGAATAC 60.658 66.667 0.00 0.00 38.18 1.89
137 138 2.622903 CTTGAGCGGACGGGCGAATA 62.623 60.000 0.00 0.00 38.18 1.75
138 139 4.077184 TTGAGCGGACGGGCGAAT 62.077 61.111 0.00 0.00 38.18 3.34
139 140 4.735132 CTTGAGCGGACGGGCGAA 62.735 66.667 0.00 0.00 38.18 4.70
142 143 4.162690 ATCCTTGAGCGGACGGGC 62.163 66.667 0.00 0.00 35.52 6.13
143 144 2.107141 GATCCTTGAGCGGACGGG 59.893 66.667 0.00 0.00 35.52 5.28
144 145 2.032860 ATGGATCCTTGAGCGGACGG 62.033 60.000 14.23 0.00 35.52 4.79
145 146 0.598680 GATGGATCCTTGAGCGGACG 60.599 60.000 14.23 0.00 35.52 4.79
146 147 0.755686 AGATGGATCCTTGAGCGGAC 59.244 55.000 14.23 0.00 35.52 4.79
147 148 2.381752 TAGATGGATCCTTGAGCGGA 57.618 50.000 14.23 0.00 37.50 5.54
148 149 3.332919 CATTAGATGGATCCTTGAGCGG 58.667 50.000 14.23 0.00 0.00 5.52
161 162 2.486191 GCACCCCTGACTCCATTAGATG 60.486 54.545 0.00 0.00 0.00 2.90
162 163 1.771255 GCACCCCTGACTCCATTAGAT 59.229 52.381 0.00 0.00 0.00 1.98
163 164 1.204146 GCACCCCTGACTCCATTAGA 58.796 55.000 0.00 0.00 0.00 2.10
164 165 0.181350 GGCACCCCTGACTCCATTAG 59.819 60.000 0.00 0.00 0.00 1.73
165 166 2.307153 GGCACCCCTGACTCCATTA 58.693 57.895 0.00 0.00 0.00 1.90
166 167 3.090765 GGCACCCCTGACTCCATT 58.909 61.111 0.00 0.00 0.00 3.16
179 180 2.969238 CGATCTCCATGCGGGCAC 60.969 66.667 0.00 0.00 36.21 5.01
180 181 3.445518 GACGATCTCCATGCGGGCA 62.446 63.158 0.00 0.00 36.21 5.36
181 182 2.663188 GACGATCTCCATGCGGGC 60.663 66.667 0.00 0.00 36.21 6.13
182 183 1.300465 CTGACGATCTCCATGCGGG 60.300 63.158 0.00 0.00 38.37 6.13
183 184 1.953138 GCTGACGATCTCCATGCGG 60.953 63.158 0.00 0.00 0.00 5.69
184 185 0.312102 TAGCTGACGATCTCCATGCG 59.688 55.000 0.00 0.00 0.00 4.73
185 186 1.777101 GTAGCTGACGATCTCCATGC 58.223 55.000 0.00 0.00 0.00 4.06
205 206 1.963338 GCATAGGCGACTCCATGGC 60.963 63.158 6.96 0.00 43.67 4.40
206 207 0.179048 TTGCATAGGCGACTCCATGG 60.179 55.000 4.97 4.97 45.35 3.66
207 208 1.224075 CTTGCATAGGCGACTCCATG 58.776 55.000 0.00 0.00 45.35 3.66
208 209 0.107456 CCTTGCATAGGCGACTCCAT 59.893 55.000 0.00 0.00 45.35 3.41
209 210 1.522092 CCTTGCATAGGCGACTCCA 59.478 57.895 0.00 0.00 45.35 3.86
210 211 4.445699 CCTTGCATAGGCGACTCC 57.554 61.111 0.00 0.00 45.35 3.85
218 219 0.811616 GACGTCCTGGCCTTGCATAG 60.812 60.000 3.51 0.00 0.00 2.23
219 220 1.220749 GACGTCCTGGCCTTGCATA 59.779 57.895 3.51 0.00 0.00 3.14
220 221 2.045926 GACGTCCTGGCCTTGCAT 60.046 61.111 3.51 0.00 0.00 3.96
221 222 4.680237 CGACGTCCTGGCCTTGCA 62.680 66.667 10.58 0.00 0.00 4.08
222 223 4.681978 ACGACGTCCTGGCCTTGC 62.682 66.667 10.58 0.00 0.00 4.01
223 224 2.738521 CACGACGTCCTGGCCTTG 60.739 66.667 10.58 0.00 0.00 3.61
224 225 4.003788 CCACGACGTCCTGGCCTT 62.004 66.667 18.70 0.00 0.00 4.35
225 226 4.988716 TCCACGACGTCCTGGCCT 62.989 66.667 23.94 0.00 0.00 5.19
226 227 3.718210 GATCCACGACGTCCTGGCC 62.718 68.421 23.94 15.84 0.00 5.36
227 228 2.202756 GATCCACGACGTCCTGGC 60.203 66.667 23.94 10.95 0.00 4.85
228 229 1.139734 CTGATCCACGACGTCCTGG 59.860 63.158 23.08 23.08 0.00 4.45
229 230 0.741326 ATCTGATCCACGACGTCCTG 59.259 55.000 10.58 8.84 0.00 3.86
230 231 0.741326 CATCTGATCCACGACGTCCT 59.259 55.000 10.58 0.00 0.00 3.85
231 232 0.456221 ACATCTGATCCACGACGTCC 59.544 55.000 10.58 0.00 0.00 4.79
232 233 2.186076 GAACATCTGATCCACGACGTC 58.814 52.381 5.18 5.18 0.00 4.34
233 234 1.544246 TGAACATCTGATCCACGACGT 59.456 47.619 0.00 0.00 0.00 4.34
234 235 2.188524 CTGAACATCTGATCCACGACG 58.811 52.381 0.00 0.00 0.00 5.12
235 236 3.238108 ACTGAACATCTGATCCACGAC 57.762 47.619 0.00 0.00 0.00 4.34
236 237 3.761752 TGTACTGAACATCTGATCCACGA 59.238 43.478 0.00 0.00 31.43 4.35
237 238 4.110036 TGTACTGAACATCTGATCCACG 57.890 45.455 0.00 0.00 31.43 4.94
238 239 4.631813 GGTTGTACTGAACATCTGATCCAC 59.368 45.833 0.00 0.00 38.10 4.02
239 240 4.285775 TGGTTGTACTGAACATCTGATCCA 59.714 41.667 0.00 0.00 38.10 3.41
240 241 4.832248 TGGTTGTACTGAACATCTGATCC 58.168 43.478 0.00 0.00 38.10 3.36
241 242 6.108687 TCATGGTTGTACTGAACATCTGATC 58.891 40.000 0.00 0.00 38.10 2.92
242 243 6.053632 TCATGGTTGTACTGAACATCTGAT 57.946 37.500 0.00 0.00 38.10 2.90
243 244 5.482006 CTCATGGTTGTACTGAACATCTGA 58.518 41.667 0.00 0.00 38.10 3.27
244 245 4.093998 GCTCATGGTTGTACTGAACATCTG 59.906 45.833 0.00 0.00 38.10 2.90
245 246 4.019860 AGCTCATGGTTGTACTGAACATCT 60.020 41.667 0.00 0.00 38.10 2.90
246 247 4.256920 AGCTCATGGTTGTACTGAACATC 58.743 43.478 0.00 0.00 38.10 3.06
247 248 4.292186 AGCTCATGGTTGTACTGAACAT 57.708 40.909 0.00 0.00 38.10 2.71
248 249 3.769739 AGCTCATGGTTGTACTGAACA 57.230 42.857 0.00 0.00 35.88 3.18
249 250 4.184629 CCTAGCTCATGGTTGTACTGAAC 58.815 47.826 0.00 0.00 0.00 3.18
250 251 3.838317 ACCTAGCTCATGGTTGTACTGAA 59.162 43.478 0.00 0.00 31.62 3.02
251 252 3.441101 ACCTAGCTCATGGTTGTACTGA 58.559 45.455 0.00 0.00 31.62 3.41
252 253 3.430929 GGACCTAGCTCATGGTTGTACTG 60.431 52.174 7.30 0.00 36.59 2.74
253 254 2.766828 GGACCTAGCTCATGGTTGTACT 59.233 50.000 7.30 0.00 36.59 2.73
254 255 2.766828 AGGACCTAGCTCATGGTTGTAC 59.233 50.000 7.30 0.00 36.59 2.90
255 256 3.116096 AGGACCTAGCTCATGGTTGTA 57.884 47.619 7.30 0.00 36.59 2.41
256 257 1.958288 AGGACCTAGCTCATGGTTGT 58.042 50.000 7.30 0.00 36.59 3.32
257 258 2.237143 TCAAGGACCTAGCTCATGGTTG 59.763 50.000 0.00 3.34 36.59 3.77
258 259 2.551270 TCAAGGACCTAGCTCATGGTT 58.449 47.619 0.00 0.00 36.59 3.67
259 260 2.254152 TCAAGGACCTAGCTCATGGT 57.746 50.000 0.00 5.77 39.60 3.55
260 261 2.038295 GGATCAAGGACCTAGCTCATGG 59.962 54.545 0.00 0.00 0.00 3.66
261 262 2.702478 TGGATCAAGGACCTAGCTCATG 59.298 50.000 0.00 0.00 0.00 3.07
262 263 2.971330 CTGGATCAAGGACCTAGCTCAT 59.029 50.000 0.00 0.00 0.00 2.90
263 264 2.292521 ACTGGATCAAGGACCTAGCTCA 60.293 50.000 1.23 0.00 0.00 4.26
264 265 2.393646 ACTGGATCAAGGACCTAGCTC 58.606 52.381 1.23 0.00 0.00 4.09
265 266 2.503356 CAACTGGATCAAGGACCTAGCT 59.497 50.000 1.23 0.00 0.00 3.32
266 267 2.237392 ACAACTGGATCAAGGACCTAGC 59.763 50.000 1.23 0.00 0.00 3.42
267 268 3.429547 CGACAACTGGATCAAGGACCTAG 60.430 52.174 1.23 0.00 0.00 3.02
268 269 2.496070 CGACAACTGGATCAAGGACCTA 59.504 50.000 1.23 0.00 0.00 3.08
269 270 1.276421 CGACAACTGGATCAAGGACCT 59.724 52.381 1.23 0.00 0.00 3.85
270 271 1.002087 ACGACAACTGGATCAAGGACC 59.998 52.381 1.23 0.00 0.00 4.46
271 272 2.028930 AGACGACAACTGGATCAAGGAC 60.029 50.000 1.23 0.00 0.00 3.85
272 273 2.029020 CAGACGACAACTGGATCAAGGA 60.029 50.000 1.23 0.00 0.00 3.36
273 274 2.341257 CAGACGACAACTGGATCAAGG 58.659 52.381 1.23 0.00 0.00 3.61
274 275 1.728971 GCAGACGACAACTGGATCAAG 59.271 52.381 0.00 0.00 36.09 3.02
275 276 1.608025 GGCAGACGACAACTGGATCAA 60.608 52.381 0.00 0.00 36.09 2.57
276 277 0.037326 GGCAGACGACAACTGGATCA 60.037 55.000 0.00 0.00 36.09 2.92
277 278 0.037326 TGGCAGACGACAACTGGATC 60.037 55.000 0.00 0.00 36.09 3.36
278 279 0.036952 CTGGCAGACGACAACTGGAT 60.037 55.000 9.42 0.00 36.09 3.41
279 280 1.367471 CTGGCAGACGACAACTGGA 59.633 57.895 9.42 0.00 36.09 3.86
280 281 1.669115 CCTGGCAGACGACAACTGG 60.669 63.158 17.94 0.00 36.09 4.00
281 282 1.669115 CCCTGGCAGACGACAACTG 60.669 63.158 17.94 0.00 38.27 3.16
282 283 2.743718 CCCTGGCAGACGACAACT 59.256 61.111 17.94 0.00 0.00 3.16
283 284 3.050275 GCCCTGGCAGACGACAAC 61.050 66.667 17.94 0.00 41.49 3.32
284 285 4.329545 GGCCCTGGCAGACGACAA 62.330 66.667 17.94 0.00 44.11 3.18
286 287 4.459089 GAGGCCCTGGCAGACGAC 62.459 72.222 17.94 7.76 44.11 4.34
289 290 3.334054 AAGGAGGCCCTGGCAGAC 61.334 66.667 17.94 7.56 43.48 3.51
290 291 3.011517 GAAGGAGGCCCTGGCAGA 61.012 66.667 17.94 0.00 43.48 4.26
291 292 3.333219 TGAAGGAGGCCCTGGCAG 61.333 66.667 7.75 7.75 43.48 4.85
292 293 3.650950 GTGAAGGAGGCCCTGGCA 61.651 66.667 10.86 0.00 43.48 4.92
293 294 4.432741 GGTGAAGGAGGCCCTGGC 62.433 72.222 0.00 0.00 43.48 4.85
294 295 4.101448 CGGTGAAGGAGGCCCTGG 62.101 72.222 0.00 0.00 43.48 4.45
295 296 4.785453 GCGGTGAAGGAGGCCCTG 62.785 72.222 0.00 0.00 43.48 4.45
299 300 4.785453 CAGGGCGGTGAAGGAGGC 62.785 72.222 0.00 0.00 0.00 4.70
300 301 2.804828 GAACAGGGCGGTGAAGGAGG 62.805 65.000 0.00 0.00 0.00 4.30
301 302 1.376037 GAACAGGGCGGTGAAGGAG 60.376 63.158 0.00 0.00 0.00 3.69
302 303 1.415672 AAGAACAGGGCGGTGAAGGA 61.416 55.000 0.00 0.00 0.00 3.36
303 304 0.537371 AAAGAACAGGGCGGTGAAGG 60.537 55.000 0.00 0.00 0.00 3.46
304 305 0.875059 GAAAGAACAGGGCGGTGAAG 59.125 55.000 0.00 0.00 0.00 3.02
305 306 0.472471 AGAAAGAACAGGGCGGTGAA 59.528 50.000 0.00 0.00 0.00 3.18
306 307 0.472471 AAGAAAGAACAGGGCGGTGA 59.528 50.000 0.00 0.00 0.00 4.02
307 308 0.875059 GAAGAAAGAACAGGGCGGTG 59.125 55.000 0.00 0.00 0.00 4.94
308 309 0.602905 CGAAGAAAGAACAGGGCGGT 60.603 55.000 0.00 0.00 0.00 5.68
309 310 1.298859 CCGAAGAAAGAACAGGGCGG 61.299 60.000 0.00 0.00 0.00 6.13
310 311 1.298859 CCCGAAGAAAGAACAGGGCG 61.299 60.000 0.00 0.00 31.58 6.13
311 312 2.556286 CCCGAAGAAAGAACAGGGC 58.444 57.895 0.00 0.00 31.58 5.19
312 313 0.250727 TGCCCGAAGAAAGAACAGGG 60.251 55.000 0.00 0.00 41.65 4.45
313 314 1.470098 CATGCCCGAAGAAAGAACAGG 59.530 52.381 0.00 0.00 0.00 4.00
314 315 1.135575 GCATGCCCGAAGAAAGAACAG 60.136 52.381 6.36 0.00 0.00 3.16
315 316 0.881118 GCATGCCCGAAGAAAGAACA 59.119 50.000 6.36 0.00 0.00 3.18
316 317 0.171231 GGCATGCCCGAAGAAAGAAC 59.829 55.000 27.24 0.00 0.00 3.01
317 318 2.566824 GGCATGCCCGAAGAAAGAA 58.433 52.632 27.24 0.00 0.00 2.52
318 319 4.319133 GGCATGCCCGAAGAAAGA 57.681 55.556 27.24 0.00 0.00 2.52
336 337 4.547367 AATACCCGCGCCTGGCTC 62.547 66.667 17.92 8.04 40.44 4.70
337 338 4.856801 CAATACCCGCGCCTGGCT 62.857 66.667 17.92 0.00 40.44 4.75
339 340 4.856801 AGCAATACCCGCGCCTGG 62.857 66.667 0.00 5.25 0.00 4.45
340 341 3.576356 CAGCAATACCCGCGCCTG 61.576 66.667 0.00 0.00 0.00 4.85
341 342 4.856801 CCAGCAATACCCGCGCCT 62.857 66.667 0.00 0.00 0.00 5.52
345 346 4.849310 TCGCCCAGCAATACCCGC 62.849 66.667 0.00 0.00 0.00 6.13
346 347 2.588877 CTCGCCCAGCAATACCCG 60.589 66.667 0.00 0.00 0.00 5.28
376 377 1.077930 CTGGCACTCCCACTGGATG 60.078 63.158 0.00 0.00 40.80 3.51
377 378 0.842030 TTCTGGCACTCCCACTGGAT 60.842 55.000 0.00 0.00 40.80 3.41
378 379 1.461268 TTCTGGCACTCCCACTGGA 60.461 57.895 0.00 0.00 39.18 3.86
379 380 1.002868 CTTCTGGCACTCCCACTGG 60.003 63.158 0.00 0.00 39.18 4.00
380 381 1.002868 CCTTCTGGCACTCCCACTG 60.003 63.158 0.00 0.00 39.18 3.66
381 382 1.152030 TCCTTCTGGCACTCCCACT 60.152 57.895 0.00 0.00 39.18 4.00
382 383 1.003233 GTCCTTCTGGCACTCCCAC 60.003 63.158 0.00 0.00 39.18 4.61
383 384 2.583441 CGTCCTTCTGGCACTCCCA 61.583 63.158 0.00 0.00 42.79 4.37
384 385 2.266055 CGTCCTTCTGGCACTCCC 59.734 66.667 0.00 0.00 0.00 4.30
385 386 2.435059 GCGTCCTTCTGGCACTCC 60.435 66.667 0.00 0.00 0.00 3.85
386 387 1.739562 CAGCGTCCTTCTGGCACTC 60.740 63.158 0.00 0.00 0.00 3.51
387 388 2.345244 CAGCGTCCTTCTGGCACT 59.655 61.111 0.00 0.00 0.00 4.40
388 389 2.029844 GACAGCGTCCTTCTGGCAC 61.030 63.158 0.00 0.00 39.36 5.01
389 390 2.343758 GACAGCGTCCTTCTGGCA 59.656 61.111 0.00 0.00 39.36 4.92
390 391 2.811317 CGACAGCGTCCTTCTGGC 60.811 66.667 3.65 0.00 36.25 4.85
391 392 2.811317 GCGACAGCGTCCTTCTGG 60.811 66.667 0.00 0.00 40.36 3.86
415 416 1.883084 CACCTCGGTTAGCATCGGC 60.883 63.158 0.00 0.00 41.61 5.54
416 417 1.227263 CCACCTCGGTTAGCATCGG 60.227 63.158 0.00 0.00 0.00 4.18
417 418 1.883084 GCCACCTCGGTTAGCATCG 60.883 63.158 3.60 0.00 36.97 3.84
418 419 1.523938 GGCCACCTCGGTTAGCATC 60.524 63.158 0.00 0.00 36.97 3.91
419 420 2.590092 GGCCACCTCGGTTAGCAT 59.410 61.111 0.00 0.00 36.97 3.79
420 421 4.077184 CGGCCACCTCGGTTAGCA 62.077 66.667 2.24 0.00 36.97 3.49
421 422 4.078516 ACGGCCACCTCGGTTAGC 62.079 66.667 2.24 0.30 36.97 3.09
422 423 2.183555 GACGGCCACCTCGGTTAG 59.816 66.667 2.24 0.00 36.97 2.34
423 424 3.751246 CGACGGCCACCTCGGTTA 61.751 66.667 2.24 0.00 36.97 2.85
427 428 4.351938 TTCACGACGGCCACCTCG 62.352 66.667 2.24 8.32 35.96 4.63
428 429 2.432628 CTTCACGACGGCCACCTC 60.433 66.667 2.24 0.00 0.00 3.85
429 430 2.915659 TCTTCACGACGGCCACCT 60.916 61.111 2.24 0.00 0.00 4.00
430 431 2.432628 CTCTTCACGACGGCCACC 60.433 66.667 2.24 0.00 0.00 4.61
431 432 2.432628 CCTCTTCACGACGGCCAC 60.433 66.667 2.24 0.00 0.00 5.01
432 433 3.691342 CCCTCTTCACGACGGCCA 61.691 66.667 2.24 0.00 0.00 5.36
433 434 3.358076 CTCCCTCTTCACGACGGCC 62.358 68.421 0.00 0.00 0.00 6.13
434 435 2.182030 CTCCCTCTTCACGACGGC 59.818 66.667 0.00 0.00 0.00 5.68
435 436 1.658686 CCTCTCCCTCTTCACGACGG 61.659 65.000 0.00 0.00 0.00 4.79
436 437 0.961358 ACCTCTCCCTCTTCACGACG 60.961 60.000 0.00 0.00 0.00 5.12
437 438 0.812549 GACCTCTCCCTCTTCACGAC 59.187 60.000 0.00 0.00 0.00 4.34
438 439 0.677098 CGACCTCTCCCTCTTCACGA 60.677 60.000 0.00 0.00 0.00 4.35
439 440 0.961358 ACGACCTCTCCCTCTTCACG 60.961 60.000 0.00 0.00 0.00 4.35
440 441 0.812549 GACGACCTCTCCCTCTTCAC 59.187 60.000 0.00 0.00 0.00 3.18
441 442 0.677098 CGACGACCTCTCCCTCTTCA 60.677 60.000 0.00 0.00 0.00 3.02
442 443 0.677414 ACGACGACCTCTCCCTCTTC 60.677 60.000 0.00 0.00 0.00 2.87
443 444 0.677414 GACGACGACCTCTCCCTCTT 60.677 60.000 0.00 0.00 0.00 2.85
444 445 1.078285 GACGACGACCTCTCCCTCT 60.078 63.158 0.00 0.00 0.00 3.69
445 446 0.748729 ATGACGACGACCTCTCCCTC 60.749 60.000 0.00 0.00 0.00 4.30
446 447 0.323542 AATGACGACGACCTCTCCCT 60.324 55.000 0.00 0.00 0.00 4.20
447 448 0.179134 CAATGACGACGACCTCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
448 449 0.802607 GCAATGACGACGACCTCTCC 60.803 60.000 0.00 0.00 0.00 3.71
449 450 0.109272 TGCAATGACGACGACCTCTC 60.109 55.000 0.00 0.00 0.00 3.20
450 451 0.532573 ATGCAATGACGACGACCTCT 59.467 50.000 0.00 0.00 0.00 3.69
451 452 2.203800 TATGCAATGACGACGACCTC 57.796 50.000 0.00 0.00 0.00 3.85
452 453 2.159099 ACATATGCAATGACGACGACCT 60.159 45.455 0.00 0.00 0.00 3.85
453 454 2.201732 ACATATGCAATGACGACGACC 58.798 47.619 0.00 0.00 0.00 4.79
454 455 4.317839 GGTTACATATGCAATGACGACGAC 60.318 45.833 0.00 0.00 0.00 4.34
455 456 3.799963 GGTTACATATGCAATGACGACGA 59.200 43.478 0.00 0.00 0.00 4.20
456 457 3.802139 AGGTTACATATGCAATGACGACG 59.198 43.478 13.53 0.00 0.00 5.12
457 458 5.734855 AAGGTTACATATGCAATGACGAC 57.265 39.130 13.53 9.16 0.00 4.34
458 459 5.645929 ACAAAGGTTACATATGCAATGACGA 59.354 36.000 13.53 0.00 0.00 4.20
459 460 5.879237 ACAAAGGTTACATATGCAATGACG 58.121 37.500 13.53 0.00 0.00 4.35
460 461 6.265577 GGACAAAGGTTACATATGCAATGAC 58.734 40.000 13.53 4.77 0.00 3.06
461 462 5.359576 GGGACAAAGGTTACATATGCAATGA 59.640 40.000 13.53 0.00 0.00 2.57
462 463 5.591099 GGGACAAAGGTTACATATGCAATG 58.409 41.667 1.58 0.00 0.00 2.82
463 464 4.338118 CGGGACAAAGGTTACATATGCAAT 59.662 41.667 1.58 0.00 0.00 3.56
464 465 3.692101 CGGGACAAAGGTTACATATGCAA 59.308 43.478 1.58 0.00 0.00 4.08
465 466 3.055021 TCGGGACAAAGGTTACATATGCA 60.055 43.478 1.58 0.00 0.00 3.96
466 467 3.537580 TCGGGACAAAGGTTACATATGC 58.462 45.455 1.58 0.00 0.00 3.14
467 468 4.574828 CCTTCGGGACAAAGGTTACATATG 59.425 45.833 0.00 0.00 37.25 1.78
496 497 2.350772 CCTGCTGGTCAAACAAATCGTC 60.351 50.000 0.51 0.00 0.00 4.20
551 552 9.247126 CATACAACATCAGAAAATGTCAACAAA 57.753 29.630 0.00 0.00 38.92 2.83
573 574 3.188100 TGCTCGCAGCGCACATAC 61.188 61.111 10.87 0.00 42.03 2.39
648 733 2.841317 GGGGGTTCCACTTTCGGT 59.159 61.111 0.00 0.00 35.00 4.69
650 735 0.820482 AAACGGGGGTTCCACTTTCG 60.820 55.000 0.00 0.00 34.36 3.46
655 750 2.203437 AGCAAACGGGGGTTCCAC 60.203 61.111 0.00 0.00 34.36 4.02
754 989 0.390492 TGGTGTGAGACAGTGCTGAG 59.610 55.000 6.17 0.00 0.00 3.35
757 992 1.447643 GGTGGTGTGAGACAGTGCT 59.552 57.895 0.00 0.00 0.00 4.40
762 997 2.504274 GGGTCGGTGGTGTGAGACA 61.504 63.158 0.00 0.00 35.49 3.41
764 999 2.123208 TGGGTCGGTGGTGTGAGA 60.123 61.111 0.00 0.00 0.00 3.27
768 1003 4.892291 AGGGTGGGTCGGTGGTGT 62.892 66.667 0.00 0.00 0.00 4.16
771 1006 2.033602 GAAAGGGTGGGTCGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
772 1007 1.302511 CTGAAAGGGTGGGTCGGTG 60.303 63.158 0.00 0.00 0.00 4.94
773 1008 1.350310 AACTGAAAGGGTGGGTCGGT 61.350 55.000 0.00 0.00 39.30 4.69
776 1011 0.605589 CGGAACTGAAAGGGTGGGTC 60.606 60.000 0.00 0.00 39.30 4.46
777 1012 1.350310 ACGGAACTGAAAGGGTGGGT 61.350 55.000 0.00 0.00 39.30 4.51
783 1018 2.770164 ATCTCCACGGAACTGAAAGG 57.230 50.000 0.00 0.00 39.30 3.11
785 1020 2.370519 TGGAATCTCCACGGAACTGAAA 59.629 45.455 0.00 0.00 42.67 2.69
786 1021 1.974957 TGGAATCTCCACGGAACTGAA 59.025 47.619 0.00 0.00 42.67 3.02
806 1061 2.204237 GTTTGGTCGTACGAACCAACT 58.796 47.619 32.86 0.00 42.48 3.16
807 1062 2.650900 GTTTGGTCGTACGAACCAAC 57.349 50.000 32.86 30.63 42.48 3.77
852 1133 1.527433 GAAGGCAGGGCAGGTTTGAC 61.527 60.000 0.00 0.00 0.00 3.18
900 1181 3.617540 TCATTAACAGTGGTGCAAACG 57.382 42.857 0.00 0.00 0.00 3.60
1159 1477 4.099573 GGGCTAGCACAAAGTAGATGTCTA 59.900 45.833 18.24 0.00 0.00 2.59
1160 1478 3.118592 GGGCTAGCACAAAGTAGATGTCT 60.119 47.826 18.24 0.00 0.00 3.41
1161 1479 3.198872 GGGCTAGCACAAAGTAGATGTC 58.801 50.000 18.24 0.00 0.00 3.06
1162 1480 2.571653 TGGGCTAGCACAAAGTAGATGT 59.428 45.455 19.63 0.00 0.00 3.06
1165 1483 2.257207 ACTGGGCTAGCACAAAGTAGA 58.743 47.619 22.33 0.00 0.00 2.59
1166 1484 2.770164 ACTGGGCTAGCACAAAGTAG 57.230 50.000 22.33 11.45 0.00 2.57
1167 1485 4.019681 ACATAACTGGGCTAGCACAAAGTA 60.020 41.667 22.33 13.19 0.00 2.24
1168 1486 3.244911 ACATAACTGGGCTAGCACAAAGT 60.245 43.478 22.33 13.76 0.00 2.66
1169 1487 3.127548 CACATAACTGGGCTAGCACAAAG 59.872 47.826 22.33 13.04 0.00 2.77
1170 1488 3.081061 CACATAACTGGGCTAGCACAAA 58.919 45.455 22.33 9.96 0.00 2.83
1282 1748 1.597663 CAGTTAATTCGGTCGGCATCC 59.402 52.381 0.00 0.00 0.00 3.51
1315 1801 8.185505 AGTCGCTAGTTATAAGAAGAAAGTGAG 58.814 37.037 0.00 0.00 0.00 3.51
1317 1803 9.953697 ATAGTCGCTAGTTATAAGAAGAAAGTG 57.046 33.333 0.00 0.00 0.00 3.16
1339 1832 9.730705 AATTAATCAGTGTAGCATATGCATAGT 57.269 29.630 28.62 14.10 45.16 2.12
1518 2028 6.521151 TGCATTTGTTGTTCCCAAATTTTT 57.479 29.167 0.00 0.00 39.77 1.94
1522 2032 6.712179 AAAATGCATTTGTTGTTCCCAAAT 57.288 29.167 24.74 1.97 41.84 2.32
1534 2044 6.260493 TCAACAGAAAGGGAAAAATGCATTTG 59.740 34.615 24.74 11.56 0.00 2.32
1535 2045 6.355747 TCAACAGAAAGGGAAAAATGCATTT 58.644 32.000 18.99 18.99 0.00 2.32
1537 2047 5.549742 TCAACAGAAAGGGAAAAATGCAT 57.450 34.783 0.00 0.00 0.00 3.96
1541 2051 6.464322 GGGTCAATCAACAGAAAGGGAAAAAT 60.464 38.462 0.00 0.00 0.00 1.82
1546 2056 2.225017 GGGGTCAATCAACAGAAAGGGA 60.225 50.000 0.00 0.00 0.00 4.20
1547 2057 2.171003 GGGGTCAATCAACAGAAAGGG 58.829 52.381 0.00 0.00 0.00 3.95
1548 2058 1.812571 CGGGGTCAATCAACAGAAAGG 59.187 52.381 0.00 0.00 0.00 3.11
1568 2078 8.954350 TGTAGTACAGGATTCTAGTGACTAAAC 58.046 37.037 0.00 0.00 0.00 2.01
1608 2122 5.221263 ACCACATCGAATAGTAGGTTAGCAG 60.221 44.000 0.00 0.00 0.00 4.24
1618 2132 5.801531 TGCCTATAACCACATCGAATAGT 57.198 39.130 0.00 0.00 0.00 2.12
1619 2133 6.398095 TCATGCCTATAACCACATCGAATAG 58.602 40.000 0.00 0.00 0.00 1.73
1620 2134 6.210584 TCTCATGCCTATAACCACATCGAATA 59.789 38.462 0.00 0.00 0.00 1.75
1621 2135 5.012046 TCTCATGCCTATAACCACATCGAAT 59.988 40.000 0.00 0.00 0.00 3.34
1622 2136 4.343814 TCTCATGCCTATAACCACATCGAA 59.656 41.667 0.00 0.00 0.00 3.71
1623 2137 3.895041 TCTCATGCCTATAACCACATCGA 59.105 43.478 0.00 0.00 0.00 3.59
1625 2139 5.106396 GCAATCTCATGCCTATAACCACATC 60.106 44.000 0.00 0.00 40.49 3.06
1668 2190 0.243907 AGTCCATGACGTCTGAACCG 59.756 55.000 17.92 0.00 37.67 4.44
1682 2204 0.534203 GTCGCCCAGTTTGAAGTCCA 60.534 55.000 0.00 0.00 0.00 4.02
1685 2207 0.110486 ATGGTCGCCCAGTTTGAAGT 59.890 50.000 0.00 0.00 46.15 3.01
1755 2277 1.216710 GTGGTTCTCGAGGAGGCTG 59.783 63.158 13.56 0.00 0.00 4.85
1883 2405 7.054124 TCTACACCAAATTCAGAACTTTCAGT 58.946 34.615 0.00 0.00 0.00 3.41
1887 2409 8.237811 ACAATCTACACCAAATTCAGAACTTT 57.762 30.769 0.00 0.00 0.00 2.66
2084 2704 1.094785 GCTGGTTCATGTTATGCCGT 58.905 50.000 0.00 0.00 0.00 5.68
2111 2731 3.795688 AGACCAATGACACCAAGTGAT 57.204 42.857 0.96 0.00 36.96 3.06
2301 2921 7.500559 AGTTGTTTCAGACTCAGCTTTAAAGAT 59.499 33.333 19.48 10.11 0.00 2.40
2317 2944 5.123186 TGTGGTCTGTTGTAAGTTGTTTCAG 59.877 40.000 0.00 0.00 0.00 3.02
2371 3005 8.801299 TGCATTTATGTTTTCTCAGTTGGAATA 58.199 29.630 0.00 0.00 0.00 1.75
2383 3017 7.814107 TCTGATCCTTTGTGCATTTATGTTTTC 59.186 33.333 0.00 0.00 0.00 2.29
2387 3021 5.163581 GCTCTGATCCTTTGTGCATTTATGT 60.164 40.000 0.00 0.00 0.00 2.29
2405 3058 7.543520 CACTATCGATTGCATAATAAGCTCTGA 59.456 37.037 1.71 0.00 0.00 3.27
2503 3736 6.267471 AGGGACTGCAAAAGTAAATCATTTCA 59.733 34.615 0.00 0.00 40.07 2.69
2607 3840 0.650512 CTAGTGCAATTACGCCACGG 59.349 55.000 0.00 0.00 0.00 4.94
2619 3852 1.545428 CCAGGAAAGCCAACTAGTGCA 60.545 52.381 7.83 0.00 36.29 4.57
2695 3928 8.630037 ACCCTGCAATTATTTTAACTGTATAGC 58.370 33.333 0.00 0.00 0.00 2.97
2697 3930 9.688091 TCACCCTGCAATTATTTTAACTGTATA 57.312 29.630 0.00 0.00 0.00 1.47
2712 3945 2.676748 TGGAACTTTTCACCCTGCAAT 58.323 42.857 0.00 0.00 0.00 3.56
2758 3991 2.034685 TCTACGGCATACAGTCTCATGC 59.965 50.000 7.22 7.22 45.47 4.06
2759 3992 3.990318 TCTACGGCATACAGTCTCATG 57.010 47.619 0.00 0.00 0.00 3.07
2783 4017 1.136110 GGAAACCAACAACCAGTGGTG 59.864 52.381 17.56 12.59 45.34 4.17
2846 4080 4.142425 ACGAAAACACCGGTAACAACATTT 60.142 37.500 6.87 0.82 0.00 2.32
3235 4474 1.594331 GGACCGGAAAGCATACCATC 58.406 55.000 9.46 0.00 0.00 3.51
3236 4475 0.179056 CGGACCGGAAAGCATACCAT 60.179 55.000 9.46 0.00 0.00 3.55
3402 4643 4.082026 GGCTTCAGCTGTTTTGGACATTAT 60.082 41.667 14.67 0.00 41.70 1.28
3403 4644 3.255642 GGCTTCAGCTGTTTTGGACATTA 59.744 43.478 14.67 0.00 41.70 1.90
3404 4645 2.036346 GGCTTCAGCTGTTTTGGACATT 59.964 45.455 14.67 0.00 41.70 2.71
3405 4646 1.615392 GGCTTCAGCTGTTTTGGACAT 59.385 47.619 14.67 0.00 41.70 3.06
3475 4716 0.745845 CAGGTTCTTGATCAGCCCCG 60.746 60.000 0.00 0.00 0.00 5.73
4064 5305 4.651778 AGGTGCACATAACACTGTATTGT 58.348 39.130 20.43 0.00 38.14 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.