Multiple sequence alignment - TraesCS3A01G447500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G447500 chr3A 100.000 6889 0 0 1 6889 687522455 687529343 0.000000e+00 12722.0
1 TraesCS3A01G447500 chr3A 79.044 983 161 32 3077 4035 687674804 687675765 3.510000e-177 632.0
2 TraesCS3A01G447500 chr3A 82.996 247 36 2 5650 5890 688351566 688351812 1.160000e-52 219.0
3 TraesCS3A01G447500 chr3A 78.859 298 46 11 2240 2536 687523507 687523788 1.180000e-42 185.0
4 TraesCS3A01G447500 chr3A 78.859 298 46 11 1053 1334 687524694 687524990 1.180000e-42 185.0
5 TraesCS3A01G447500 chr3A 90.625 128 8 1 2604 2731 687674334 687674457 4.270000e-37 167.0
6 TraesCS3A01G447500 chr3A 78.481 237 44 6 4525 4757 688274752 688274985 1.550000e-31 148.0
7 TraesCS3A01G447500 chr3D 92.227 6188 346 49 1 6127 550648010 550654123 0.000000e+00 8637.0
8 TraesCS3A01G447500 chr3D 78.332 983 172 31 3077 4035 550682240 550683205 1.280000e-166 597.0
9 TraesCS3A01G447500 chr3D 81.712 257 38 5 1053 1300 550650230 550650486 9.060000e-49 206.0
10 TraesCS3A01G447500 chr3D 80.972 247 41 6 5650 5890 551204208 551204454 2.540000e-44 191.0
11 TraesCS3A01G447500 chr3D 79.916 239 37 9 4525 4757 551079060 551079293 1.540000e-36 165.0
12 TraesCS3A01G447500 chr3D 78.077 260 35 13 2240 2495 550649068 550649309 2.000000e-30 145.0
13 TraesCS3A01G447500 chr3D 86.719 128 14 2 2604 2731 550681637 550681761 9.320000e-29 139.0
14 TraesCS3A01G447500 chr3B 92.501 4214 229 33 1978 6127 730231392 730235582 0.000000e+00 5951.0
15 TraesCS3A01G447500 chr3B 88.998 1227 86 17 19 1218 730230101 730231305 0.000000e+00 1472.0
16 TraesCS3A01G447500 chr3B 79.053 993 153 40 3077 4046 730342875 730343835 1.260000e-176 630.0
17 TraesCS3A01G447500 chr3B 78.957 556 89 25 3506 4041 730314149 730314696 3.060000e-93 353.0
18 TraesCS3A01G447500 chr3B 80.309 259 35 10 3095 3349 730313691 730313937 1.530000e-41 182.0
19 TraesCS3A01G447500 chr3B 80.488 246 41 3 5652 5890 730759891 730760136 1.530000e-41 182.0
20 TraesCS3A01G447500 chr3B 80.296 203 26 11 2238 2435 730231136 730231329 2.590000e-29 141.0
21 TraesCS3A01G447500 chr3B 87.500 112 11 3 2648 2756 730756645 730756756 7.250000e-25 126.0
22 TraesCS3A01G447500 chr5B 89.155 627 54 8 6125 6750 349384913 349384300 0.000000e+00 769.0
23 TraesCS3A01G447500 chr5D 75.089 281 59 10 3752 4026 469728892 469728617 3.370000e-23 121.0
24 TraesCS3A01G447500 chr5A 74.194 279 57 12 3750 4026 590677972 590677707 1.220000e-17 102.0
25 TraesCS3A01G447500 chr4B 97.059 34 1 0 1573 1606 565738110 565738143 2.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G447500 chr3A 687522455 687529343 6888 False 12722.000000 12722 100.0000 1 6889 1 chr3A.!!$F1 6888
1 TraesCS3A01G447500 chr3A 687674334 687675765 1431 False 399.500000 632 84.8345 2604 4035 2 chr3A.!!$F5 1431
2 TraesCS3A01G447500 chr3D 550648010 550654123 6113 False 8637.000000 8637 92.2270 1 6127 1 chr3D.!!$F1 6126
3 TraesCS3A01G447500 chr3D 550681637 550683205 1568 False 368.000000 597 82.5255 2604 4035 2 chr3D.!!$F5 1431
4 TraesCS3A01G447500 chr3B 730230101 730235582 5481 False 2521.333333 5951 87.2650 19 6127 3 chr3B.!!$F2 6108
5 TraesCS3A01G447500 chr3B 730342875 730343835 960 False 630.000000 630 79.0530 3077 4046 1 chr3B.!!$F1 969
6 TraesCS3A01G447500 chr3B 730313691 730314696 1005 False 267.500000 353 79.6330 3095 4041 2 chr3B.!!$F3 946
7 TraesCS3A01G447500 chr5B 349384300 349384913 613 True 769.000000 769 89.1550 6125 6750 1 chr5B.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1019 0.459899 TGGGTGATCGAATCGACCTG 59.540 55.000 7.77 0.0 39.18 4.00 F
1207 1242 0.252197 GAACGGTTATGGACCCTGCT 59.748 55.000 0.00 0.0 46.35 4.24 F
1616 1690 0.316204 AGCATGTTTTCCACTGCAGC 59.684 50.000 15.27 0.0 37.09 5.25 F
2173 2263 0.392998 CCATCAGTACAGCCCGCTTT 60.393 55.000 0.00 0.0 0.00 3.51 F
2611 2727 0.803380 CTTGCGCATTTTAGCTGGCC 60.803 55.000 12.75 0.0 0.00 5.36 F
2718 2835 1.745890 CGTCTGGGACACCTTCACA 59.254 57.895 0.00 0.0 34.11 3.58 F
4628 5038 0.530744 TTGGGTCTCGACTTCCATCG 59.469 55.000 0.00 0.0 43.63 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2020 0.032952 TCGGGTGTTACTGTGTCAGC 59.967 55.000 0.00 0.00 34.37 4.26 R
2309 2399 0.173481 GGGTCGTCCGTTACCTTACC 59.827 60.000 0.00 0.00 35.97 2.85 R
3473 3858 1.728971 GCCACACAGATTCAGAACTCG 59.271 52.381 0.00 0.00 0.00 4.18 R
3785 4195 2.441750 TCCAAACTCCCTAAAGCACACT 59.558 45.455 0.00 0.00 0.00 3.55 R
4569 4979 2.626785 TGGGTAATCTCCAGACACCAA 58.373 47.619 10.11 0.00 35.35 3.67 R
4640 5050 2.104792 TCCCTTGACAACTTGAGACTGG 59.895 50.000 0.00 0.00 0.00 4.00 R
6397 6815 0.035152 ATCCTTCATGAAGTGCCGCA 60.035 50.000 29.03 9.91 36.72 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 4.500716 CGTGATTAACTTGCCTTTTTGGGT 60.501 41.667 0.00 0.00 36.00 4.51
70 72 6.824958 AGAATATGGGCTGGACTAACTTTA 57.175 37.500 0.00 0.00 0.00 1.85
149 151 2.376518 AGTAATGGGCCCACTCATATGG 59.623 50.000 31.51 0.00 39.71 2.74
281 289 8.067751 AGAAGCTCACATACTACATGAAACTA 57.932 34.615 0.00 0.00 0.00 2.24
283 291 9.967346 GAAGCTCACATACTACATGAAACTATA 57.033 33.333 0.00 0.00 0.00 1.31
354 362 5.992217 GTGAAGAGAAGTGTTCAATAGTGGT 59.008 40.000 0.00 0.00 37.68 4.16
358 366 7.540474 AGAGAAGTGTTCAATAGTGGTAAGA 57.460 36.000 0.00 0.00 0.00 2.10
359 367 7.963532 AGAGAAGTGTTCAATAGTGGTAAGAA 58.036 34.615 0.00 0.00 0.00 2.52
360 368 8.429641 AGAGAAGTGTTCAATAGTGGTAAGAAA 58.570 33.333 0.00 0.00 0.00 2.52
471 481 7.504922 TTTTCATGTTTTGAGAAAGTGTTCG 57.495 32.000 0.00 0.00 38.90 3.95
511 521 6.037610 GTGTCCATGTATCTCTCAAAACCATC 59.962 42.308 0.00 0.00 0.00 3.51
512 522 6.115446 GTCCATGTATCTCTCAAAACCATCA 58.885 40.000 0.00 0.00 0.00 3.07
515 525 7.500227 TCCATGTATCTCTCAAAACCATCAATC 59.500 37.037 0.00 0.00 0.00 2.67
527 537 8.748412 TCAAAACCATCAATCTATTTTACCCAG 58.252 33.333 0.00 0.00 0.00 4.45
633 661 3.659786 CGATTTGTCCCTTATATGGCGA 58.340 45.455 0.00 0.00 0.00 5.54
642 670 5.753921 GTCCCTTATATGGCGATATAAGTGC 59.246 44.000 30.62 21.60 45.80 4.40
648 676 1.140852 TGGCGATATAAGTGCTTGCCT 59.859 47.619 10.28 0.00 41.51 4.75
658 686 1.832167 TGCTTGCCTGTTTGGGGTC 60.832 57.895 0.00 0.00 36.00 4.46
671 699 4.237207 GGGTCGATTCCCTCCCGC 62.237 72.222 3.83 0.00 43.85 6.13
850 878 2.994387 TTCAGCACTGTGGTCCAGCG 62.994 60.000 9.92 0.00 45.68 5.18
919 951 6.216801 TGCAGGTTGTACTATAAAGATCGT 57.783 37.500 0.00 0.00 0.00 3.73
937 969 3.645884 TCGTCAGGGTTAAGAAGAAACG 58.354 45.455 0.00 0.00 0.00 3.60
945 977 5.473504 AGGGTTAAGAAGAAACGTAGTACGA 59.526 40.000 28.47 0.06 45.00 3.43
984 1016 0.460311 AGGTGGGTGATCGAATCGAC 59.540 55.000 7.77 2.84 39.18 4.20
987 1019 0.459899 TGGGTGATCGAATCGACCTG 59.540 55.000 7.77 0.00 39.18 4.00
989 1021 0.876342 GGTGATCGAATCGACCTGGC 60.876 60.000 7.77 0.00 39.18 4.85
1135 1167 4.552355 CGCATACCAGGTAACGAATGATA 58.448 43.478 16.82 0.00 46.39 2.15
1138 1170 5.405571 GCATACCAGGTAACGAATGATACAG 59.594 44.000 2.53 0.00 46.39 2.74
1145 1177 8.573885 CCAGGTAACGAATGATACAGATTAGTA 58.426 37.037 0.00 0.00 46.39 1.82
1149 1181 6.010294 ACGAATGATACAGATTAGTACCGG 57.990 41.667 0.00 0.00 0.00 5.28
1159 1191 2.754946 TTAGTACCGGCTTGAACTGG 57.245 50.000 0.00 0.00 42.28 4.00
1170 1205 4.209080 CGGCTTGAACTGGAATTTGTTTTC 59.791 41.667 0.00 0.00 0.00 2.29
1175 1210 5.728471 TGAACTGGAATTTGTTTTCTTGCA 58.272 33.333 0.00 0.00 0.00 4.08
1194 1229 6.535865 TCTTGCACATATTTTATACGAACGGT 59.464 34.615 0.00 0.00 0.00 4.83
1196 1231 7.767745 TGCACATATTTTATACGAACGGTTA 57.232 32.000 0.00 0.00 0.00 2.85
1207 1242 0.252197 GAACGGTTATGGACCCTGCT 59.748 55.000 0.00 0.00 46.35 4.24
1218 1259 2.642311 TGGACCCTGCTTCTCATGTAAA 59.358 45.455 0.00 0.00 0.00 2.01
1223 1264 4.520492 ACCCTGCTTCTCATGTAAACAAAG 59.480 41.667 0.00 0.00 0.00 2.77
1224 1265 4.082571 CCCTGCTTCTCATGTAAACAAAGG 60.083 45.833 0.00 0.00 0.00 3.11
1232 1273 7.323049 TCTCATGTAAACAAAGGAAACGAAA 57.677 32.000 0.00 0.00 0.00 3.46
1259 1300 1.499007 AGTTGTTCATTGGGGTCCACT 59.501 47.619 0.00 0.00 30.78 4.00
1260 1301 1.613437 GTTGTTCATTGGGGTCCACTG 59.387 52.381 0.00 0.00 35.83 3.66
1292 1333 5.123979 CAGGGAAGCCTAACAAGATAACAAC 59.876 44.000 0.00 0.00 0.00 3.32
1293 1334 4.398358 GGGAAGCCTAACAAGATAACAACC 59.602 45.833 0.00 0.00 0.00 3.77
1294 1335 5.007682 GGAAGCCTAACAAGATAACAACCA 58.992 41.667 0.00 0.00 0.00 3.67
1295 1336 5.106277 GGAAGCCTAACAAGATAACAACCAC 60.106 44.000 0.00 0.00 0.00 4.16
1296 1337 4.980573 AGCCTAACAAGATAACAACCACA 58.019 39.130 0.00 0.00 0.00 4.17
1297 1338 4.760204 AGCCTAACAAGATAACAACCACAC 59.240 41.667 0.00 0.00 0.00 3.82
1298 1339 4.517453 GCCTAACAAGATAACAACCACACA 59.483 41.667 0.00 0.00 0.00 3.72
1299 1340 5.009210 GCCTAACAAGATAACAACCACACAA 59.991 40.000 0.00 0.00 0.00 3.33
1300 1341 6.460399 GCCTAACAAGATAACAACCACACAAA 60.460 38.462 0.00 0.00 0.00 2.83
1301 1342 6.915843 CCTAACAAGATAACAACCACACAAAC 59.084 38.462 0.00 0.00 0.00 2.93
1302 1343 5.906113 ACAAGATAACAACCACACAAACA 57.094 34.783 0.00 0.00 0.00 2.83
1303 1344 6.463995 ACAAGATAACAACCACACAAACAT 57.536 33.333 0.00 0.00 0.00 2.71
1304 1345 7.575414 ACAAGATAACAACCACACAAACATA 57.425 32.000 0.00 0.00 0.00 2.29
1305 1346 8.001881 ACAAGATAACAACCACACAAACATAA 57.998 30.769 0.00 0.00 0.00 1.90
1306 1347 8.637986 ACAAGATAACAACCACACAAACATAAT 58.362 29.630 0.00 0.00 0.00 1.28
1307 1348 9.474920 CAAGATAACAACCACACAAACATAATT 57.525 29.630 0.00 0.00 0.00 1.40
1395 1468 6.470235 GCGACAATGATCTTCATTTCGAAAAT 59.530 34.615 15.66 2.98 44.03 1.82
1397 1470 8.309019 CGACAATGATCTTCATTTCGAAAATTG 58.691 33.333 15.66 17.74 44.03 2.32
1398 1471 9.345517 GACAATGATCTTCATTTCGAAAATTGA 57.654 29.630 23.93 17.88 44.03 2.57
1399 1472 9.865321 ACAATGATCTTCATTTCGAAAATTGAT 57.135 25.926 23.93 19.28 44.03 2.57
1474 1548 4.513406 AAGAACCGAATTATAGGGGCAA 57.487 40.909 0.00 0.00 0.00 4.52
1491 1565 3.181469 GGGCAATACAGACTTATCACCGA 60.181 47.826 0.00 0.00 0.00 4.69
1504 1578 9.303116 AGACTTATCACCGAGTATATCAGAAAT 57.697 33.333 0.00 0.00 0.00 2.17
1535 1609 6.861065 AAGCGATAGAAACTGAAAAGAACA 57.139 33.333 0.00 0.00 39.76 3.18
1540 1614 7.459486 CGATAGAAACTGAAAAGAACAGGATG 58.541 38.462 0.00 0.00 40.65 3.51
1541 1615 7.413438 CGATAGAAACTGAAAAGAACAGGATGG 60.413 40.741 0.00 0.00 38.95 3.51
1567 1641 7.097409 GCTTATTCTAAAGCGCTTATTTTCACG 60.097 37.037 25.33 10.64 42.21 4.35
1595 1669 9.994432 CAATTTTTCTTCTTCTAGAATACGCAT 57.006 29.630 5.44 0.00 33.13 4.73
1614 1688 3.614630 GCATAAGCATGTTTTCCACTGCA 60.615 43.478 0.00 0.00 41.58 4.41
1615 1689 2.806608 AAGCATGTTTTCCACTGCAG 57.193 45.000 13.48 13.48 37.09 4.41
1616 1690 0.316204 AGCATGTTTTCCACTGCAGC 59.684 50.000 15.27 0.00 37.09 5.25
1617 1691 0.316204 GCATGTTTTCCACTGCAGCT 59.684 50.000 15.27 0.00 34.77 4.24
1618 1692 1.269936 GCATGTTTTCCACTGCAGCTT 60.270 47.619 15.27 0.00 34.77 3.74
1619 1693 2.030007 GCATGTTTTCCACTGCAGCTTA 60.030 45.455 15.27 0.00 34.77 3.09
1620 1694 3.367703 GCATGTTTTCCACTGCAGCTTAT 60.368 43.478 15.27 0.00 34.77 1.73
1621 1695 3.921119 TGTTTTCCACTGCAGCTTATG 57.079 42.857 15.27 4.12 0.00 1.90
1628 1702 5.614324 TCCACTGCAGCTTATGTATAAGT 57.386 39.130 15.27 0.00 41.34 2.24
1637 1711 6.535150 GCAGCTTATGTATAAGTCACAACTCA 59.465 38.462 11.95 0.00 41.34 3.41
1673 1747 6.699642 GCCTTAGCAAGTTTATGAAAACAACA 59.300 34.615 4.04 0.00 42.33 3.33
1712 1786 7.208080 ACCCGTAATCTACACATTAGACAATC 58.792 38.462 0.00 0.00 0.00 2.67
1715 1789 7.096599 CCGTAATCTACACATTAGACAATCACG 60.097 40.741 0.00 0.00 0.00 4.35
1724 1798 4.866508 TTAGACAATCACGGAGTTGAGT 57.133 40.909 3.46 0.00 41.61 3.41
1733 1807 4.755411 TCACGGAGTTGAGTGATAAATCC 58.245 43.478 0.00 0.00 41.61 3.01
1736 1810 2.872858 GGAGTTGAGTGATAAATCCGCC 59.127 50.000 0.00 0.00 33.33 6.13
1737 1811 3.531538 GAGTTGAGTGATAAATCCGCCA 58.468 45.455 0.00 0.00 0.00 5.69
1738 1812 3.270877 AGTTGAGTGATAAATCCGCCAC 58.729 45.455 0.00 0.00 0.00 5.01
1739 1813 3.055094 AGTTGAGTGATAAATCCGCCACT 60.055 43.478 0.00 0.00 41.96 4.00
1740 1814 2.905075 TGAGTGATAAATCCGCCACTG 58.095 47.619 0.00 0.00 39.67 3.66
1741 1815 1.599542 GAGTGATAAATCCGCCACTGC 59.400 52.381 0.00 0.00 39.67 4.40
1742 1816 1.210478 AGTGATAAATCCGCCACTGCT 59.790 47.619 0.00 0.00 38.32 4.24
1743 1817 2.434336 AGTGATAAATCCGCCACTGCTA 59.566 45.455 0.00 0.00 38.32 3.49
1744 1818 3.118408 AGTGATAAATCCGCCACTGCTAA 60.118 43.478 0.00 0.00 38.32 3.09
1745 1819 3.248602 GTGATAAATCCGCCACTGCTAAG 59.751 47.826 0.00 0.00 34.43 2.18
1746 1820 1.663695 TAAATCCGCCACTGCTAAGC 58.336 50.000 0.00 0.00 34.43 3.09
1751 1825 4.410400 GCCACTGCTAAGCGGGGT 62.410 66.667 0.00 0.00 36.45 4.95
1752 1826 2.351276 CCACTGCTAAGCGGGGTT 59.649 61.111 0.00 0.00 36.45 4.11
1753 1827 2.040544 CCACTGCTAAGCGGGGTTG 61.041 63.158 0.00 0.00 36.45 3.77
1828 1902 5.715753 TCCCTAGTAGAGAGAGTGAAAAACC 59.284 44.000 0.00 0.00 0.00 3.27
1832 1906 7.762159 CCTAGTAGAGAGAGTGAAAAACCAATC 59.238 40.741 0.00 0.00 0.00 2.67
1865 1939 9.800433 CTAATCTACATATCTGTCATAGCTTGG 57.200 37.037 0.00 0.00 36.79 3.61
1869 1943 6.430962 ACATATCTGTCATAGCTTGGTGAT 57.569 37.500 0.00 0.00 0.00 3.06
1886 1960 4.708726 GTGATTTTGCAGCTCACCTTAT 57.291 40.909 12.04 0.00 34.55 1.73
1906 1980 6.209788 CCTTATAGCTAGCTACTGCCTTTAGT 59.790 42.308 26.41 9.29 40.80 2.24
2121 2211 2.719979 CATGATGAGCAAGGCCGC 59.280 61.111 0.00 0.00 0.00 6.53
2172 2262 1.221840 CCATCAGTACAGCCCGCTT 59.778 57.895 0.00 0.00 0.00 4.68
2173 2263 0.392998 CCATCAGTACAGCCCGCTTT 60.393 55.000 0.00 0.00 0.00 3.51
2190 2280 3.087781 GCTTTCATGGCCTTCTTCTTCT 58.912 45.455 3.32 0.00 0.00 2.85
2191 2281 3.509184 GCTTTCATGGCCTTCTTCTTCTT 59.491 43.478 3.32 0.00 0.00 2.52
2192 2282 4.380339 GCTTTCATGGCCTTCTTCTTCTTC 60.380 45.833 3.32 0.00 0.00 2.87
2288 2378 2.171725 GCCGGAATTCGTCTTCGGG 61.172 63.158 17.97 16.34 44.33 5.14
2310 2400 2.505982 CCACCTCGGCATACCAGG 59.494 66.667 0.31 0.31 39.10 4.45
2311 2401 2.367202 CCACCTCGGCATACCAGGT 61.367 63.158 0.00 0.00 43.90 4.00
2312 2402 1.046472 CCACCTCGGCATACCAGGTA 61.046 60.000 0.39 0.39 42.28 3.08
2326 2416 1.135286 CCAGGTAAGGTAACGGACGAC 60.135 57.143 0.00 0.00 46.39 4.34
2338 2428 1.203994 ACGGACGACCCAGATTAGTTG 59.796 52.381 0.00 0.00 34.14 3.16
2378 2468 7.938563 TTTGTTTTCTTGCGCATATTTTAGT 57.061 28.000 12.75 0.00 0.00 2.24
2381 2471 5.539582 TTTCTTGCGCATATTTTAGTCGT 57.460 34.783 12.75 0.00 0.00 4.34
2382 2472 6.650239 TTTCTTGCGCATATTTTAGTCGTA 57.350 33.333 12.75 0.00 0.00 3.43
2383 2473 6.838198 TTCTTGCGCATATTTTAGTCGTAT 57.162 33.333 12.75 0.00 0.00 3.06
2504 2602 3.153919 ACAAGTCAACAACCACACAAGT 58.846 40.909 0.00 0.00 0.00 3.16
2517 2619 8.730680 ACAACCACACAAGTAGATTATCATTTC 58.269 33.333 0.00 0.00 0.00 2.17
2522 2624 7.281774 CACACAAGTAGATTATCATTTCCTGCT 59.718 37.037 0.00 0.00 0.00 4.24
2558 2666 8.823220 AGTTTTATGTGGCTCTGGTTATTTAT 57.177 30.769 0.00 0.00 0.00 1.40
2570 2678 8.234546 GCTCTGGTTATTTATTTTTCAACTCGA 58.765 33.333 0.00 0.00 0.00 4.04
2611 2727 0.803380 CTTGCGCATTTTAGCTGGCC 60.803 55.000 12.75 0.00 0.00 5.36
2718 2835 1.745890 CGTCTGGGACACCTTCACA 59.254 57.895 0.00 0.00 34.11 3.58
2731 2848 2.092646 ACCTTCACACAAGCAGGTAACA 60.093 45.455 0.00 0.00 37.91 2.41
2732 2849 2.290641 CCTTCACACAAGCAGGTAACAC 59.709 50.000 0.00 0.00 41.41 3.32
2748 2866 7.388500 GCAGGTAACACACTAATTAACCTGTTA 59.612 37.037 22.38 14.03 42.82 2.41
2830 2949 9.533253 AAAACTTTGTTTGACAATATTCTCCTG 57.467 29.630 0.00 0.00 38.00 3.86
2926 3046 7.790782 AATCATGGTTAAATTTACCTGGTGT 57.209 32.000 10.23 0.00 36.60 4.16
2927 3047 6.582677 TCATGGTTAAATTTACCTGGTGTG 57.417 37.500 10.23 8.17 36.60 3.82
3202 3500 9.241317 GTATGAAAGCATTCCACAATATTTCTG 57.759 33.333 0.00 0.00 35.94 3.02
3211 3510 4.868171 TCCACAATATTTCTGTCGCAGTAC 59.132 41.667 6.72 0.00 32.61 2.73
3215 3514 5.807520 ACAATATTTCTGTCGCAGTACTCAG 59.192 40.000 0.00 0.00 32.61 3.35
3216 3515 2.724977 TTTCTGTCGCAGTACTCAGG 57.275 50.000 8.89 0.00 32.61 3.86
3218 3517 1.905637 TCTGTCGCAGTACTCAGGAA 58.094 50.000 8.89 0.00 32.61 3.36
3276 3586 2.135189 CAATTACAGATGGGAGGGGGA 58.865 52.381 0.00 0.00 0.00 4.81
3603 3988 6.209788 TGGTTAAGCCCTAAAATTGTGTAAGG 59.790 38.462 1.51 0.00 36.04 2.69
3608 3993 4.668636 CCCTAAAATTGTGTAAGGTCCCA 58.331 43.478 0.00 0.00 0.00 4.37
3609 3994 5.081032 CCCTAAAATTGTGTAAGGTCCCAA 58.919 41.667 0.00 0.00 0.00 4.12
3629 4015 4.210328 CCAAAACTTTCCATTTGTAACGGC 59.790 41.667 0.00 0.00 35.30 5.68
3695 4090 1.838112 TGGAGGTGGCTTATGCAAAG 58.162 50.000 2.72 0.00 41.91 2.77
3990 4400 3.564053 TGATACTGGCTCATGCATCAA 57.436 42.857 0.00 0.00 41.91 2.57
4005 4415 4.242475 TGCATCAACTACCAGACTTTACG 58.758 43.478 0.00 0.00 0.00 3.18
4064 4474 4.885325 ACTAAAAGTGAAGCCTTTTTCCGA 59.115 37.500 4.44 0.00 40.78 4.55
4180 4590 7.534723 AGAAAGTACTGGTTCACTATACACA 57.465 36.000 9.43 0.00 0.00 3.72
4215 4625 6.803320 GTCTCCATGATTACAATTTGTGTGTG 59.197 38.462 12.30 4.33 41.89 3.82
4428 4838 2.926200 GACGAACTCTGATGTGGATGTG 59.074 50.000 0.00 0.00 0.00 3.21
4537 4947 6.176896 TCACAATAAGTATGCAGCTAACCAA 58.823 36.000 0.00 0.00 0.00 3.67
4600 5010 4.346127 TGGAGATTACCCAGATGTGATGAG 59.654 45.833 0.00 0.00 0.00 2.90
4628 5038 0.530744 TTGGGTCTCGACTTCCATCG 59.469 55.000 0.00 0.00 43.63 3.84
4637 5047 3.057019 TCGACTTCCATCGTTCACAAAG 58.943 45.455 0.00 0.00 42.80 2.77
4640 5050 3.139077 ACTTCCATCGTTCACAAAGTCC 58.861 45.455 0.00 0.00 0.00 3.85
4643 5053 1.806542 CCATCGTTCACAAAGTCCCAG 59.193 52.381 0.00 0.00 0.00 4.45
4920 5333 4.893608 ACCCAAATAATTTGTTGCCACTC 58.106 39.130 0.00 0.00 38.98 3.51
4922 5335 4.252878 CCAAATAATTTGTTGCCACTCCC 58.747 43.478 0.00 0.00 38.98 4.30
4923 5336 3.866883 AATAATTTGTTGCCACTCCCG 57.133 42.857 0.00 0.00 0.00 5.14
4979 5392 7.041644 GGCCGAGTGCTAACATAATATTTGTTA 60.042 37.037 15.90 15.90 40.92 2.41
5179 5596 7.633789 AGATATTGTCCACCTTATGAGTTGTT 58.366 34.615 0.00 0.00 0.00 2.83
5222 5639 4.219070 TCTTTTGATTGCAGAATGTCCCAG 59.781 41.667 0.00 0.00 39.31 4.45
5356 5773 4.321230 GGTTGCAACGATCTCCAATTTTCT 60.321 41.667 22.67 0.00 0.00 2.52
5416 5833 3.683365 TGCAGACATCACAGCTTCTAA 57.317 42.857 0.00 0.00 0.00 2.10
5452 5869 6.186420 TCACTAATATATTCTGCCTTGCCA 57.814 37.500 0.00 0.00 0.00 4.92
5462 5879 0.749091 TGCCTTGCCATTCATCTCCG 60.749 55.000 0.00 0.00 0.00 4.63
5561 5978 2.710096 GGCAGTAAGGTCAGCCATTA 57.290 50.000 0.00 0.00 46.26 1.90
5608 6025 1.312815 AGTCAACAGCACTGCCTTTC 58.687 50.000 0.00 0.00 0.00 2.62
5629 6046 2.159338 CCGCAAAATGTCCAGGATTCAG 60.159 50.000 0.00 0.00 0.00 3.02
5730 6147 1.160137 CTTCGAGTTCTTTGCAGGGG 58.840 55.000 0.00 0.00 0.00 4.79
5779 6196 1.593006 CGATTTTAACGATGAGGCGCT 59.407 47.619 7.64 0.00 33.86 5.92
5836 6253 3.072915 TCTGGCTTCCTGAAGAACAATGA 59.927 43.478 11.00 1.78 40.79 2.57
5839 6256 3.057946 GGCTTCCTGAAGAACAATGACAC 60.058 47.826 11.00 0.00 40.79 3.67
5875 6292 1.469251 GCTCGAAAGTACAGGATCGCA 60.469 52.381 0.00 0.00 35.39 5.10
5903 6320 3.119884 TGCAATGAGCCGTAAAACAGATG 60.120 43.478 0.00 0.00 44.83 2.90
5919 6336 2.932614 CAGATGGTGGAAATGTCGAGTC 59.067 50.000 0.00 0.00 0.00 3.36
5936 6353 8.867112 TGTCGAGTCATCCTATGTAAATAAAC 57.133 34.615 0.00 0.00 0.00 2.01
6005 6422 5.783875 ACCTTATGTACCTACAAGAGTGGTT 59.216 40.000 0.00 0.00 39.99 3.67
6041 6458 1.215140 TGGCCATGTCTCATGATGGA 58.785 50.000 15.80 0.00 41.63 3.41
6078 6495 3.603158 AACAGGTTTTGCTCGGTTTTT 57.397 38.095 0.00 0.00 0.00 1.94
6099 6516 4.669206 TCCGCTAATTAACCGGACAATA 57.331 40.909 9.46 0.00 45.30 1.90
6106 6523 6.759827 GCTAATTAACCGGACAATACTCTTCA 59.240 38.462 9.46 0.00 0.00 3.02
6111 6528 3.190874 CCGGACAATACTCTTCAGCTTC 58.809 50.000 0.00 0.00 0.00 3.86
6174 6591 2.837883 GCGGCCATACATGCACTGG 61.838 63.158 2.24 0.00 0.00 4.00
6193 6610 3.997021 CTGGTGCTGAATTTTACTCGAGT 59.003 43.478 23.66 23.66 0.00 4.18
6196 6613 2.742053 TGCTGAATTTTACTCGAGTGGC 59.258 45.455 28.12 16.71 0.00 5.01
6246 6663 3.560636 ACATATGGCCACCAGTCTTAC 57.439 47.619 8.16 0.00 36.75 2.34
6250 6667 1.299976 GGCCACCAGTCTTACCCTG 59.700 63.158 0.00 0.00 0.00 4.45
6255 6673 1.072331 CACCAGTCTTACCCTGCAACT 59.928 52.381 0.00 0.00 0.00 3.16
6298 6716 2.444895 ATCGAGGGCTCCCACTCC 60.445 66.667 7.82 0.00 38.92 3.85
6309 6727 3.770040 CCACTCCGGGTCATGCGA 61.770 66.667 0.00 0.00 0.00 5.10
6330 6748 5.793675 CGAAGCAATTGTTAGAGATCACAG 58.206 41.667 7.40 0.00 0.00 3.66
6344 6762 7.962995 AGAGATCACAGAGGTTACTTCATTA 57.037 36.000 0.00 0.00 0.00 1.90
6361 6779 6.042781 ACTTCATTACTGGTTCTACCTCACAA 59.957 38.462 0.00 0.00 39.58 3.33
6364 6782 7.458397 TCATTACTGGTTCTACCTCACAAATT 58.542 34.615 0.00 0.00 39.58 1.82
6370 6788 6.068010 TGGTTCTACCTCACAAATTGAACAT 58.932 36.000 0.00 0.00 39.58 2.71
6373 6791 7.174253 GGTTCTACCTCACAAATTGAACATGTA 59.826 37.037 0.00 0.00 34.73 2.29
6387 6805 4.452114 TGAACATGTAGCAGATGTTGTGTC 59.548 41.667 13.61 3.87 42.74 3.67
6388 6806 4.277515 ACATGTAGCAGATGTTGTGTCT 57.722 40.909 0.00 0.00 29.39 3.41
6397 6815 2.149578 GATGTTGTGTCTGCAGAAGCT 58.850 47.619 20.19 0.00 42.74 3.74
6420 6838 2.353889 CGGCACTTCATGAAGGATTGAG 59.646 50.000 33.11 18.21 42.53 3.02
6439 6857 1.205460 GGCTACTCCAAACCCTGGGA 61.205 60.000 22.23 0.00 46.44 4.37
6444 6862 0.251742 CTCCAAACCCTGGGATGCAA 60.252 55.000 22.23 7.86 46.44 4.08
6451 6869 0.322098 CCCTGGGATGCAACAACGTA 60.322 55.000 7.01 0.00 0.00 3.57
6452 6870 1.681780 CCCTGGGATGCAACAACGTAT 60.682 52.381 7.01 0.00 0.00 3.06
6459 6877 4.574828 GGGATGCAACAACGTATAAGTGAT 59.425 41.667 0.00 0.00 0.00 3.06
6460 6878 5.065988 GGGATGCAACAACGTATAAGTGATT 59.934 40.000 0.00 0.00 0.00 2.57
6482 6900 8.219868 TGATTATGGACAATATCATTGTGGTCT 58.780 33.333 9.16 0.00 31.96 3.85
6525 6943 1.414158 TACTCTATGGTGGCAGCTCC 58.586 55.000 18.53 1.47 0.00 4.70
6527 6945 1.680522 CTCTATGGTGGCAGCTCCGT 61.681 60.000 18.53 5.40 37.80 4.69
6528 6946 1.221840 CTATGGTGGCAGCTCCGTT 59.778 57.895 18.53 0.60 37.80 4.44
6529 6947 1.078497 TATGGTGGCAGCTCCGTTG 60.078 57.895 18.53 0.00 37.80 4.10
6553 6971 7.049754 TGCTTGATGATTGCAGAGACTTAATA 58.950 34.615 0.00 0.00 32.55 0.98
6555 6973 7.226325 GCTTGATGATTGCAGAGACTTAATACT 59.774 37.037 0.00 0.00 0.00 2.12
6570 6988 6.522946 ACTTAATACTAGAATTCGGGAAGGC 58.477 40.000 0.00 0.00 0.00 4.35
6580 6998 4.608948 ATTCGGGAAGGCTACTATTGAG 57.391 45.455 0.00 0.00 0.00 3.02
6585 7003 3.817647 GGGAAGGCTACTATTGAGCATTG 59.182 47.826 0.00 0.00 43.47 2.82
6590 7008 7.095017 GGAAGGCTACTATTGAGCATTGTAATC 60.095 40.741 0.00 0.00 43.47 1.75
6591 7009 6.830912 AGGCTACTATTGAGCATTGTAATCA 58.169 36.000 0.00 0.00 41.98 2.57
6592 7010 7.282585 AGGCTACTATTGAGCATTGTAATCAA 58.717 34.615 0.00 4.38 41.98 2.57
6593 7011 7.941238 AGGCTACTATTGAGCATTGTAATCAAT 59.059 33.333 14.19 14.19 43.93 2.57
6618 7036 1.945387 ATCTAATGCAGTGGCTCACG 58.055 50.000 0.00 0.00 39.64 4.35
6624 7042 2.097038 GCAGTGGCTCACGTGCTAG 61.097 63.158 11.67 5.16 39.64 3.42
6635 7053 2.124942 GTGCTAGCAGAGTGGGGC 60.125 66.667 20.03 0.00 0.00 5.80
6650 7068 3.053291 GGCCGTGCGAACAATCCA 61.053 61.111 0.00 0.00 0.00 3.41
6652 7070 1.442017 GCCGTGCGAACAATCCAAC 60.442 57.895 0.00 0.00 0.00 3.77
6679 7097 1.412710 GATGGATGCACCTCCGAGTTA 59.587 52.381 1.97 0.00 38.21 2.24
6685 7103 4.503296 GGATGCACCTCCGAGTTATATTGT 60.503 45.833 0.00 0.00 35.41 2.71
6690 7108 6.314400 TGCACCTCCGAGTTATATTGTTAAAC 59.686 38.462 0.00 0.00 0.00 2.01
6706 7124 7.485418 TTGTTAAACTTTTAGCAGACGATGA 57.515 32.000 0.00 0.00 35.72 2.92
6707 7125 7.667043 TGTTAAACTTTTAGCAGACGATGAT 57.333 32.000 0.00 0.00 31.59 2.45
6746 7164 7.798710 TTAATATAGAGCTAGCCATGAAGGT 57.201 36.000 12.13 0.00 40.61 3.50
6750 7168 2.843113 AGAGCTAGCCATGAAGGTCTTT 59.157 45.455 12.13 0.00 45.72 2.52
6751 7169 3.118445 AGAGCTAGCCATGAAGGTCTTTC 60.118 47.826 12.13 0.00 45.72 2.62
6752 7170 2.092699 AGCTAGCCATGAAGGTCTTTCC 60.093 50.000 12.13 0.00 40.61 3.13
6753 7171 2.555199 CTAGCCATGAAGGTCTTTCCG 58.445 52.381 0.00 0.00 41.99 4.30
6754 7172 0.693049 AGCCATGAAGGTCTTTCCGT 59.307 50.000 0.00 0.00 41.99 4.69
6755 7173 1.087501 GCCATGAAGGTCTTTCCGTC 58.912 55.000 0.00 0.00 43.38 4.79
6783 7201 5.937975 AAAAACTGCCTGCCATATATGTT 57.062 34.783 11.73 0.00 0.00 2.71
6784 7202 5.937975 AAAACTGCCTGCCATATATGTTT 57.062 34.783 11.73 0.68 0.00 2.83
6785 7203 5.937975 AAACTGCCTGCCATATATGTTTT 57.062 34.783 11.73 0.00 0.00 2.43
6786 7204 7.416964 AAAACTGCCTGCCATATATGTTTTA 57.583 32.000 11.73 0.00 35.51 1.52
6787 7205 6.391227 AACTGCCTGCCATATATGTTTTAC 57.609 37.500 11.73 0.00 0.00 2.01
6788 7206 5.445069 ACTGCCTGCCATATATGTTTTACA 58.555 37.500 11.73 3.92 0.00 2.41
6789 7207 5.299279 ACTGCCTGCCATATATGTTTTACAC 59.701 40.000 11.73 0.00 0.00 2.90
6790 7208 5.196695 TGCCTGCCATATATGTTTTACACA 58.803 37.500 11.73 0.00 40.71 3.72
6791 7209 5.299028 TGCCTGCCATATATGTTTTACACAG 59.701 40.000 11.73 7.01 39.40 3.66
6792 7210 5.299279 GCCTGCCATATATGTTTTACACAGT 59.701 40.000 11.73 0.00 39.40 3.55
6793 7211 6.728200 CCTGCCATATATGTTTTACACAGTG 58.272 40.000 11.73 0.00 39.40 3.66
6794 7212 6.542005 CCTGCCATATATGTTTTACACAGTGA 59.458 38.462 7.81 0.00 39.40 3.41
6795 7213 7.229306 CCTGCCATATATGTTTTACACAGTGAT 59.771 37.037 7.81 0.00 39.40 3.06
6796 7214 8.518430 TGCCATATATGTTTTACACAGTGATT 57.482 30.769 7.81 0.00 39.40 2.57
6797 7215 8.965819 TGCCATATATGTTTTACACAGTGATTT 58.034 29.630 7.81 0.00 39.40 2.17
6798 7216 9.801873 GCCATATATGTTTTACACAGTGATTTT 57.198 29.630 7.81 0.00 39.40 1.82
6804 7222 8.801715 ATGTTTTACACAGTGATTTTCATGAC 57.198 30.769 7.81 0.00 39.40 3.06
6805 7223 7.995289 TGTTTTACACAGTGATTTTCATGACT 58.005 30.769 7.81 0.00 0.00 3.41
6806 7224 8.465999 TGTTTTACACAGTGATTTTCATGACTT 58.534 29.630 7.81 0.00 0.00 3.01
6807 7225 9.301153 GTTTTACACAGTGATTTTCATGACTTT 57.699 29.630 7.81 0.00 0.00 2.66
6808 7226 8.854979 TTTACACAGTGATTTTCATGACTTTG 57.145 30.769 7.81 0.00 32.31 2.77
6809 7227 5.835257 ACACAGTGATTTTCATGACTTTGG 58.165 37.500 7.81 0.00 30.78 3.28
6810 7228 4.682860 CACAGTGATTTTCATGACTTTGGC 59.317 41.667 0.00 0.00 0.00 4.52
6811 7229 3.916172 CAGTGATTTTCATGACTTTGGCG 59.084 43.478 0.00 0.00 0.00 5.69
6812 7230 2.663119 GTGATTTTCATGACTTTGGCGC 59.337 45.455 0.00 0.00 0.00 6.53
6813 7231 2.295629 TGATTTTCATGACTTTGGCGCA 59.704 40.909 10.83 0.00 0.00 6.09
6814 7232 2.132740 TTTTCATGACTTTGGCGCAC 57.867 45.000 10.83 0.00 0.00 5.34
6815 7233 1.028130 TTTCATGACTTTGGCGCACA 58.972 45.000 10.83 1.22 0.00 4.57
6816 7234 0.310543 TTCATGACTTTGGCGCACAC 59.689 50.000 10.83 0.00 0.00 3.82
6817 7235 0.534877 TCATGACTTTGGCGCACACT 60.535 50.000 10.83 0.00 0.00 3.55
6818 7236 1.155889 CATGACTTTGGCGCACACTA 58.844 50.000 10.83 0.00 0.00 2.74
6819 7237 1.535028 CATGACTTTGGCGCACACTAA 59.465 47.619 10.83 0.00 0.00 2.24
6820 7238 0.941542 TGACTTTGGCGCACACTAAC 59.058 50.000 10.83 0.00 0.00 2.34
6821 7239 1.226746 GACTTTGGCGCACACTAACT 58.773 50.000 10.83 0.00 0.00 2.24
6822 7240 1.194772 GACTTTGGCGCACACTAACTC 59.805 52.381 10.83 0.00 0.00 3.01
6823 7241 0.163788 CTTTGGCGCACACTAACTCG 59.836 55.000 10.83 0.00 0.00 4.18
6824 7242 1.837538 TTTGGCGCACACTAACTCGC 61.838 55.000 10.83 0.00 45.99 5.03
6826 7244 3.838795 GCGCACACTAACTCGCCG 61.839 66.667 0.30 0.00 41.53 6.46
6827 7245 2.430244 CGCACACTAACTCGCCGT 60.430 61.111 0.00 0.00 0.00 5.68
6828 7246 2.434134 CGCACACTAACTCGCCGTC 61.434 63.158 0.00 0.00 0.00 4.79
6829 7247 2.092882 GCACACTAACTCGCCGTCC 61.093 63.158 0.00 0.00 0.00 4.79
6830 7248 1.585006 CACACTAACTCGCCGTCCT 59.415 57.895 0.00 0.00 0.00 3.85
6831 7249 0.732880 CACACTAACTCGCCGTCCTG 60.733 60.000 0.00 0.00 0.00 3.86
6832 7250 1.153823 CACTAACTCGCCGTCCTGG 60.154 63.158 0.00 0.00 42.50 4.45
6833 7251 2.348888 ACTAACTCGCCGTCCTGGG 61.349 63.158 0.00 0.00 38.63 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.124636 GCAAGTTAATCACGAACGACCAT 59.875 43.478 0.14 0.00 31.85 3.55
39 41 2.104111 CCAGCCCATATTCTACCACGAA 59.896 50.000 0.00 0.00 0.00 3.85
114 116 5.128663 GGCCCATTACTAATCATTTTGGTGT 59.871 40.000 0.00 0.00 0.00 4.16
116 118 4.653801 GGGCCCATTACTAATCATTTTGGT 59.346 41.667 19.95 0.00 0.00 3.67
317 325 9.950496 ACACTTCTCTTCACATACAGAATAAAT 57.050 29.630 0.00 0.00 0.00 1.40
326 334 8.651588 CACTATTGAACACTTCTCTTCACATAC 58.348 37.037 0.00 0.00 0.00 2.39
471 481 4.782019 TGGACACTTTTCATTACCATGC 57.218 40.909 0.00 0.00 0.00 4.06
633 661 3.701040 CCCAAACAGGCAAGCACTTATAT 59.299 43.478 0.00 0.00 35.39 0.86
642 670 0.609131 ATCGACCCCAAACAGGCAAG 60.609 55.000 0.00 0.00 35.39 4.01
658 686 4.547367 GTGGGCGGGAGGGAATCG 62.547 72.222 0.00 0.00 0.00 3.34
850 878 5.190528 TGCCATCCTCTCCAAGATAATATCC 59.809 44.000 0.00 0.00 0.00 2.59
896 924 6.127563 TGACGATCTTTATAGTACAACCTGCA 60.128 38.462 0.00 0.00 0.00 4.41
919 951 5.796424 ACTACGTTTCTTCTTAACCCTGA 57.204 39.130 0.00 0.00 0.00 3.86
937 969 4.813161 TGCACTACTCAGGTATCGTACTAC 59.187 45.833 0.00 0.00 0.00 2.73
945 977 3.957497 CCTTCTCTGCACTACTCAGGTAT 59.043 47.826 0.00 0.00 32.63 2.73
1135 1167 3.514309 AGTTCAAGCCGGTACTAATCTGT 59.486 43.478 1.90 0.00 0.00 3.41
1138 1170 3.118884 TCCAGTTCAAGCCGGTACTAATC 60.119 47.826 1.90 0.00 0.00 1.75
1145 1177 1.613437 CAAATTCCAGTTCAAGCCGGT 59.387 47.619 1.90 0.00 0.00 5.28
1149 1181 6.708676 CAAGAAAACAAATTCCAGTTCAAGC 58.291 36.000 0.00 0.00 0.00 4.01
1170 1205 6.711579 ACCGTTCGTATAAAATATGTGCAAG 58.288 36.000 0.00 0.00 0.00 4.01
1175 1210 8.981647 GTCCATAACCGTTCGTATAAAATATGT 58.018 33.333 0.00 0.00 0.00 2.29
1194 1229 2.846206 ACATGAGAAGCAGGGTCCATAA 59.154 45.455 0.00 0.00 31.20 1.90
1196 1231 1.293062 ACATGAGAAGCAGGGTCCAT 58.707 50.000 0.00 0.00 31.20 3.41
1207 1242 6.928979 TCGTTTCCTTTGTTTACATGAGAA 57.071 33.333 0.00 0.00 0.00 2.87
1236 1277 2.316108 GGACCCCAATGAACAACTGTT 58.684 47.619 0.00 0.00 41.64 3.16
1238 1279 1.613437 GTGGACCCCAATGAACAACTG 59.387 52.381 0.00 0.00 34.18 3.16
1239 1280 1.499007 AGTGGACCCCAATGAACAACT 59.501 47.619 0.00 0.00 34.18 3.16
1240 1281 1.995376 AGTGGACCCCAATGAACAAC 58.005 50.000 0.00 0.00 34.18 3.32
1260 1301 4.966123 GGCTTCCCTGTTAGAGCC 57.034 61.111 0.00 0.00 46.81 4.70
1311 1352 9.515226 ACATACTAACTAAAATGAGCAAGGAAA 57.485 29.630 0.00 0.00 0.00 3.13
1312 1353 8.946085 CACATACTAACTAAAATGAGCAAGGAA 58.054 33.333 0.00 0.00 0.00 3.36
1313 1354 7.065803 GCACATACTAACTAAAATGAGCAAGGA 59.934 37.037 0.00 0.00 36.39 3.36
1314 1355 7.189512 GCACATACTAACTAAAATGAGCAAGG 58.810 38.462 0.00 0.00 36.39 3.61
1315 1356 6.901887 CGCACATACTAACTAAAATGAGCAAG 59.098 38.462 0.00 0.00 36.22 4.01
1316 1357 6.592220 TCGCACATACTAACTAAAATGAGCAA 59.408 34.615 0.00 0.00 36.22 3.91
1317 1358 6.035650 GTCGCACATACTAACTAAAATGAGCA 59.964 38.462 0.00 0.00 36.22 4.26
1318 1359 6.035650 TGTCGCACATACTAACTAAAATGAGC 59.964 38.462 0.00 0.00 34.08 4.26
1319 1360 7.520119 TGTCGCACATACTAACTAAAATGAG 57.480 36.000 0.00 0.00 0.00 2.90
1320 1361 7.892778 TTGTCGCACATACTAACTAAAATGA 57.107 32.000 0.00 0.00 0.00 2.57
1321 1362 8.387354 TCATTGTCGCACATACTAACTAAAATG 58.613 33.333 0.00 0.00 0.00 2.32
1322 1363 8.487313 TCATTGTCGCACATACTAACTAAAAT 57.513 30.769 0.00 0.00 0.00 1.82
1326 1367 6.569780 ACATCATTGTCGCACATACTAACTA 58.430 36.000 0.00 0.00 0.00 2.24
1367 1440 4.435917 CGAAATGAAGATCATTGTCGCACA 60.436 41.667 16.65 0.00 45.57 4.57
1395 1468 7.545489 TGCTGCACATATGAACATAAAATCAA 58.455 30.769 10.38 0.00 0.00 2.57
1397 1470 7.990541 TTGCTGCACATATGAACATAAAATC 57.009 32.000 10.38 0.00 0.00 2.17
1398 1471 8.658609 GTTTTGCTGCACATATGAACATAAAAT 58.341 29.630 10.38 0.00 0.00 1.82
1399 1472 7.654923 TGTTTTGCTGCACATATGAACATAAAA 59.345 29.630 10.38 12.86 0.00 1.52
1400 1473 7.116090 GTGTTTTGCTGCACATATGAACATAAA 59.884 33.333 10.38 8.42 35.81 1.40
1445 1519 9.297037 CCCCTATAATTCGGTTCTTATGAAATT 57.703 33.333 0.00 0.00 33.52 1.82
1447 1521 6.713450 GCCCCTATAATTCGGTTCTTATGAAA 59.287 38.462 0.00 0.00 33.52 2.69
1458 1532 4.935808 GTCTGTATTGCCCCTATAATTCGG 59.064 45.833 0.00 0.00 0.00 4.30
1459 1533 5.794894 AGTCTGTATTGCCCCTATAATTCG 58.205 41.667 0.00 0.00 0.00 3.34
1470 1544 4.051922 CTCGGTGATAAGTCTGTATTGCC 58.948 47.826 0.00 0.00 0.00 4.52
1474 1548 9.168451 CTGATATACTCGGTGATAAGTCTGTAT 57.832 37.037 0.00 0.00 0.00 2.29
1504 1578 8.836268 TTTCAGTTTCTATCGCTTTACCTTAA 57.164 30.769 0.00 0.00 0.00 1.85
1509 1583 8.280497 TGTTCTTTTCAGTTTCTATCGCTTTAC 58.720 33.333 0.00 0.00 0.00 2.01
1518 1592 5.473504 GCCATCCTGTTCTTTTCAGTTTCTA 59.526 40.000 0.00 0.00 0.00 2.10
1535 1609 3.142174 GCGCTTTAGAATAAGCCATCCT 58.858 45.455 0.00 0.00 46.06 3.24
1540 1614 7.165977 GTGAAAATAAGCGCTTTAGAATAAGCC 59.834 37.037 30.13 8.02 46.06 4.35
1541 1615 7.097409 CGTGAAAATAAGCGCTTTAGAATAAGC 60.097 37.037 30.13 10.31 45.50 3.09
1560 1634 6.337356 AGAAGAAGAAAAATTGCCGTGAAAA 58.663 32.000 0.00 0.00 0.00 2.29
1567 1641 7.429630 GCGTATTCTAGAAGAAGAAAAATTGCC 59.570 37.037 15.85 0.00 37.69 4.52
1595 1669 2.030007 GCTGCAGTGGAAAACATGCTTA 60.030 45.455 16.64 0.00 35.78 3.09
1614 1688 8.067751 TCTGAGTTGTGACTTATACATAAGCT 57.932 34.615 8.57 0.00 42.66 3.74
1615 1689 8.703604 TTCTGAGTTGTGACTTATACATAAGC 57.296 34.615 8.57 3.62 42.66 3.09
1618 1692 9.856488 GTTCTTCTGAGTTGTGACTTATACATA 57.144 33.333 0.00 0.00 35.88 2.29
1619 1693 8.589338 AGTTCTTCTGAGTTGTGACTTATACAT 58.411 33.333 0.00 0.00 35.88 2.29
1620 1694 7.952671 AGTTCTTCTGAGTTGTGACTTATACA 58.047 34.615 0.00 0.00 35.88 2.29
1621 1695 9.344309 GTAGTTCTTCTGAGTTGTGACTTATAC 57.656 37.037 0.00 0.00 35.88 1.47
1628 1702 3.552273 GGCGTAGTTCTTCTGAGTTGTGA 60.552 47.826 0.00 0.00 0.00 3.58
1637 1711 3.258622 ACTTGCTAAGGCGTAGTTCTTCT 59.741 43.478 9.20 0.00 42.25 2.85
1673 1747 2.330440 ACGGGTTTTCAACTAACGGT 57.670 45.000 0.00 0.00 0.00 4.83
1693 1767 6.873997 TCCGTGATTGTCTAATGTGTAGATT 58.126 36.000 0.00 0.00 0.00 2.40
1712 1786 3.551890 CGGATTTATCACTCAACTCCGTG 59.448 47.826 5.89 0.00 41.02 4.94
1715 1789 2.872858 GGCGGATTTATCACTCAACTCC 59.127 50.000 0.00 0.00 0.00 3.85
1736 1810 0.605319 TTCAACCCCGCTTAGCAGTG 60.605 55.000 4.70 0.00 0.00 3.66
1737 1811 0.109723 TTTCAACCCCGCTTAGCAGT 59.890 50.000 4.70 0.00 0.00 4.40
1738 1812 0.521735 GTTTCAACCCCGCTTAGCAG 59.478 55.000 4.70 0.00 0.00 4.24
1739 1813 1.231958 CGTTTCAACCCCGCTTAGCA 61.232 55.000 4.70 0.00 0.00 3.49
1740 1814 1.500396 CGTTTCAACCCCGCTTAGC 59.500 57.895 0.00 0.00 0.00 3.09
1741 1815 0.604511 ACCGTTTCAACCCCGCTTAG 60.605 55.000 0.00 0.00 0.00 2.18
1742 1816 0.179023 AACCGTTTCAACCCCGCTTA 60.179 50.000 0.00 0.00 0.00 3.09
1743 1817 1.449726 GAACCGTTTCAACCCCGCTT 61.450 55.000 0.00 0.00 0.00 4.68
1744 1818 1.895231 GAACCGTTTCAACCCCGCT 60.895 57.895 0.00 0.00 0.00 5.52
1745 1819 2.640989 GAACCGTTTCAACCCCGC 59.359 61.111 0.00 0.00 0.00 6.13
1746 1820 2.940561 CGAACCGTTTCAACCCCG 59.059 61.111 0.00 0.00 0.00 5.73
1747 1821 1.449726 AAGCGAACCGTTTCAACCCC 61.450 55.000 0.00 0.00 0.00 4.95
1748 1822 0.382873 AAAGCGAACCGTTTCAACCC 59.617 50.000 0.00 0.00 28.83 4.11
1749 1823 1.332686 AGAAAGCGAACCGTTTCAACC 59.667 47.619 12.82 0.00 35.49 3.77
1750 1824 2.601504 GGAGAAAGCGAACCGTTTCAAC 60.602 50.000 12.82 0.00 35.49 3.18
1751 1825 1.600485 GGAGAAAGCGAACCGTTTCAA 59.400 47.619 12.82 0.00 35.49 2.69
1752 1826 1.202604 AGGAGAAAGCGAACCGTTTCA 60.203 47.619 12.82 0.00 35.49 2.69
1753 1827 1.459975 GAGGAGAAAGCGAACCGTTTC 59.540 52.381 0.00 0.00 33.59 2.78
1853 1927 3.825585 TGCAAAATCACCAAGCTATGACA 59.174 39.130 0.00 0.00 0.00 3.58
1855 1929 3.119388 GCTGCAAAATCACCAAGCTATGA 60.119 43.478 0.00 0.00 0.00 2.15
1865 1939 4.708726 ATAAGGTGAGCTGCAAAATCAC 57.291 40.909 14.25 14.25 42.07 3.06
1945 2020 0.032952 TCGGGTGTTACTGTGTCAGC 59.967 55.000 0.00 0.00 34.37 4.26
2114 2204 1.451936 CAGCTTATAGGGCGGCCTT 59.548 57.895 37.40 24.32 34.52 4.35
2121 2211 0.610232 GGCCATGGCAGCTTATAGGG 60.610 60.000 36.56 0.00 44.11 3.53
2172 2262 3.074390 TGGAAGAAGAAGAAGGCCATGAA 59.926 43.478 5.01 0.00 0.00 2.57
2173 2263 2.644299 TGGAAGAAGAAGAAGGCCATGA 59.356 45.455 5.01 0.00 0.00 3.07
2190 2280 0.178891 AGGAGCAGGAGGAACTGGAA 60.179 55.000 0.00 0.00 41.55 3.53
2191 2281 0.906756 CAGGAGCAGGAGGAACTGGA 60.907 60.000 0.00 0.00 41.55 3.86
2192 2282 1.601171 CAGGAGCAGGAGGAACTGG 59.399 63.158 0.00 0.00 41.55 4.00
2303 2393 2.689983 CGTCCGTTACCTTACCTGGTAT 59.310 50.000 7.50 0.00 41.63 2.73
2308 2398 1.177401 GGTCGTCCGTTACCTTACCT 58.823 55.000 0.00 0.00 32.72 3.08
2309 2399 0.173481 GGGTCGTCCGTTACCTTACC 59.827 60.000 0.00 0.00 35.97 2.85
2310 2400 0.887933 TGGGTCGTCCGTTACCTTAC 59.112 55.000 0.00 0.00 38.76 2.34
2311 2401 1.176527 CTGGGTCGTCCGTTACCTTA 58.823 55.000 0.00 0.00 38.76 2.69
2312 2402 0.540365 TCTGGGTCGTCCGTTACCTT 60.540 55.000 0.00 0.00 38.76 3.50
2338 2428 1.886542 ACAAAATTCAGTTCGAGCCCC 59.113 47.619 0.00 0.00 0.00 5.80
2517 2619 9.180678 CACATAAAACTAACTAAAACAAGCAGG 57.819 33.333 0.00 0.00 0.00 4.85
2522 2624 9.127277 AGAGCCACATAAAACTAACTAAAACAA 57.873 29.630 0.00 0.00 0.00 2.83
2558 2666 3.380004 AGCCACACATTCGAGTTGAAAAA 59.620 39.130 0.00 0.00 40.71 1.94
2570 2678 2.108250 AGGTAAACCAGAGCCACACATT 59.892 45.455 1.26 0.00 38.89 2.71
2611 2727 2.417651 CCAGAGAAGCAGAGCAAGAGAG 60.418 54.545 0.00 0.00 0.00 3.20
2718 2835 6.206048 GGTTAATTAGTGTGTTACCTGCTTGT 59.794 38.462 0.00 0.00 0.00 3.16
2731 2848 6.653740 GGCAGAACTAACAGGTTAATTAGTGT 59.346 38.462 1.03 0.00 40.04 3.55
2732 2849 6.879458 AGGCAGAACTAACAGGTTAATTAGTG 59.121 38.462 1.03 0.00 40.04 2.74
2776 2894 4.236527 ACCCTGAATTTGGTCAGATACC 57.763 45.455 3.78 0.00 46.76 2.73
2830 2949 2.096496 CGACATTTTCCCTGTCATCAGC 59.904 50.000 4.53 0.00 42.52 4.26
2907 3027 5.697067 AGTCACACCAGGTAAATTTAACCA 58.303 37.500 9.67 0.00 39.64 3.67
2926 3046 9.768215 AATTAATAGGGAAAGGAATTCAAGTCA 57.232 29.630 7.93 0.00 39.98 3.41
3048 3332 3.611766 ACAACAACCTAATCCTCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
3106 3402 3.430042 AGTGTCAACCATGAGCTTGAT 57.570 42.857 0.00 0.00 35.88 2.57
3202 3500 4.927425 TGTAAATTTCCTGAGTACTGCGAC 59.073 41.667 0.00 0.00 0.00 5.19
3243 3549 9.439500 CCCATCTGTAATTGTCAATTTTGAAAT 57.561 29.630 15.77 2.52 39.21 2.17
3256 3566 2.135189 TCCCCCTCCCATCTGTAATTG 58.865 52.381 0.00 0.00 0.00 2.32
3473 3858 1.728971 GCCACACAGATTCAGAACTCG 59.271 52.381 0.00 0.00 0.00 4.18
3603 3988 5.460748 CGTTACAAATGGAAAGTTTTGGGAC 59.539 40.000 0.00 0.00 0.00 4.46
3608 3993 4.045783 CGCCGTTACAAATGGAAAGTTTT 58.954 39.130 2.03 0.00 40.11 2.43
3609 3994 3.315749 TCGCCGTTACAAATGGAAAGTTT 59.684 39.130 2.03 0.00 40.11 2.66
3695 4090 5.181690 TCAACTAAACATTGTCAAGGCAC 57.818 39.130 0.00 0.00 0.00 5.01
3730 4140 3.838565 TCAATGCCACTGGTTAGGAAAA 58.161 40.909 0.00 0.00 0.00 2.29
3785 4195 2.441750 TCCAAACTCCCTAAAGCACACT 59.558 45.455 0.00 0.00 0.00 3.55
3884 4294 4.323477 TTGGAGCAACGTCCCGGG 62.323 66.667 16.85 16.85 35.49 5.73
3887 4297 2.671963 GGGTTGGAGCAACGTCCC 60.672 66.667 0.00 0.00 44.36 4.46
3990 4400 5.796424 TTTTCTCCGTAAAGTCTGGTAGT 57.204 39.130 0.00 0.00 0.00 2.73
4005 4415 7.206687 AGATGACTCACTCGATATTTTTCTCC 58.793 38.462 0.00 0.00 0.00 3.71
4064 4474 9.403583 TCCTTAAAGAAAACAGAGTAAACATGT 57.596 29.630 0.00 0.00 0.00 3.21
4215 4625 7.736447 ACTGCCTAGAACATAATAATCTTGC 57.264 36.000 0.00 0.00 0.00 4.01
4290 4700 9.624697 GTTAGCATGTGAAAATACATCAAGAAA 57.375 29.630 0.00 0.00 39.17 2.52
4428 4838 7.269316 AGTCTAAGTATCTTTTAGCTGCTTCC 58.731 38.462 7.79 0.00 0.00 3.46
4537 4947 6.951971 AGTATCCTAGAAAAGCATCACAAGT 58.048 36.000 0.00 0.00 0.00 3.16
4569 4979 2.626785 TGGGTAATCTCCAGACACCAA 58.373 47.619 10.11 0.00 35.35 3.67
4600 5010 3.146847 AGTCGAGACCCAACATTTTTCC 58.853 45.455 0.00 0.00 0.00 3.13
4628 5038 3.194005 TGAGACTGGGACTTTGTGAAC 57.806 47.619 0.00 0.00 0.00 3.18
4637 5047 2.910688 TGACAACTTGAGACTGGGAC 57.089 50.000 0.00 0.00 0.00 4.46
4640 5050 2.104792 TCCCTTGACAACTTGAGACTGG 59.895 50.000 0.00 0.00 0.00 4.00
4643 5053 2.147150 GCTCCCTTGACAACTTGAGAC 58.853 52.381 0.00 0.00 0.00 3.36
4736 5146 4.708909 AGAGACATGTCTGCTGAATAGTCA 59.291 41.667 32.50 0.00 40.61 3.41
4789 5201 8.877779 CACTCCTTCTGACTACAATTAATGAAG 58.122 37.037 0.00 0.00 0.00 3.02
4804 5216 0.322816 GCATTGCCCACTCCTTCTGA 60.323 55.000 0.00 0.00 0.00 3.27
4920 5333 5.037015 TCAAATTCGTGTGTATTTTCGGG 57.963 39.130 0.00 0.00 0.00 5.14
4922 5335 7.267600 GGTTACTCAAATTCGTGTGTATTTTCG 59.732 37.037 0.00 0.00 30.07 3.46
4923 5336 7.536281 GGGTTACTCAAATTCGTGTGTATTTTC 59.464 37.037 0.00 0.00 30.07 2.29
4979 5392 5.710513 TGTTTTAGAAGCTGCATCACAAT 57.289 34.783 7.68 0.00 0.00 2.71
5196 5613 5.047802 GGGACATTCTGCAATCAAAAGAGAA 60.048 40.000 0.00 0.00 0.00 2.87
5198 5615 4.219070 TGGGACATTCTGCAATCAAAAGAG 59.781 41.667 0.00 0.00 0.00 2.85
5222 5639 1.734465 CGGGTCACTTTGAGAAGATGC 59.266 52.381 0.00 0.00 36.69 3.91
5380 5797 5.976458 TGTCTGCATGAACACTATGACATA 58.024 37.500 0.00 0.00 0.00 2.29
5387 5804 4.248058 CTGTGATGTCTGCATGAACACTA 58.752 43.478 0.00 0.00 35.07 2.74
5389 5806 2.413765 GCTGTGATGTCTGCATGAACAC 60.414 50.000 0.00 0.00 35.07 3.32
5394 5811 2.357075 AGAAGCTGTGATGTCTGCATG 58.643 47.619 0.00 0.00 35.07 4.06
5439 5856 2.957006 GAGATGAATGGCAAGGCAGAAT 59.043 45.455 2.05 0.00 0.00 2.40
5440 5857 2.372264 GAGATGAATGGCAAGGCAGAA 58.628 47.619 2.05 0.00 0.00 3.02
5452 5869 1.742761 CAACACCTGCGGAGATGAAT 58.257 50.000 4.80 0.00 0.00 2.57
5561 5978 7.404671 ACTACATTCTTGGTGACTTTTGTTT 57.595 32.000 0.00 0.00 0.00 2.83
5608 6025 1.818060 TGAATCCTGGACATTTTGCGG 59.182 47.619 0.00 0.00 0.00 5.69
5629 6046 7.270579 GCAAAACTACGTCAGGATAAAAATGTC 59.729 37.037 0.00 0.00 0.00 3.06
5656 6073 1.470098 CGTTTGCTCCATTCCTGAAGG 59.530 52.381 0.00 0.00 0.00 3.46
5730 6147 3.116531 GCCGTACCGTGACTTGGC 61.117 66.667 0.00 0.00 35.04 4.52
5750 6167 4.558470 TCATCGTTAAAATCGACACGGTAC 59.442 41.667 0.00 0.00 40.07 3.34
5779 6196 3.345808 GCTTCGCTTGTCGTGGCA 61.346 61.111 0.00 0.00 39.67 4.92
5836 6253 1.403780 GCTCGTTCCGAACATAGGTGT 60.404 52.381 11.74 0.00 41.28 4.16
5839 6256 1.841450 GAGCTCGTTCCGAACATAGG 58.159 55.000 11.74 0.00 34.74 2.57
5848 6265 2.251893 CTGTACTTTCGAGCTCGTTCC 58.748 52.381 33.33 17.24 40.80 3.62
5861 6278 1.759445 AGAGCATGCGATCCTGTACTT 59.241 47.619 13.01 0.00 0.00 2.24
5903 6320 2.093447 AGGATGACTCGACATTTCCACC 60.093 50.000 3.38 0.00 0.00 4.61
6018 6435 0.816421 TCATGAGACATGGCCATGCG 60.816 55.000 39.74 22.15 42.39 4.73
6041 6458 4.080186 ACCTGTTACAACACACCTAAACCT 60.080 41.667 0.00 0.00 34.70 3.50
6099 6516 8.922237 TCAATCTATTGATAGAAGCTGAAGAGT 58.078 33.333 4.92 0.00 42.20 3.24
6106 6523 7.256261 CCACCTCTCAATCTATTGATAGAAGCT 60.256 40.741 15.78 0.00 44.92 3.74
6111 6528 5.931146 GCACCACCTCTCAATCTATTGATAG 59.069 44.000 5.88 8.15 44.92 2.08
6147 6564 4.662961 TATGGCCGCCGCTGATCG 62.663 66.667 4.58 0.00 38.08 3.69
6157 6574 1.451927 ACCAGTGCATGTATGGCCG 60.452 57.895 11.47 0.00 37.64 6.13
6174 6591 3.424962 GCCACTCGAGTAAAATTCAGCAC 60.425 47.826 19.57 0.00 0.00 4.40
6193 6610 2.231380 GGAGTTCCCTTCCCAGCCA 61.231 63.158 0.00 0.00 0.00 4.75
6196 6613 2.439880 GGAATAGGAGTTCCCTTCCCAG 59.560 54.545 14.77 0.00 44.85 4.45
6221 6638 2.945668 GACTGGTGGCCATATGTTCTTC 59.054 50.000 9.72 0.00 30.82 2.87
6246 6663 3.935203 CACATTCAGTAGTAGTTGCAGGG 59.065 47.826 0.00 0.00 0.00 4.45
6250 6667 3.612860 CGTCCACATTCAGTAGTAGTTGC 59.387 47.826 0.00 0.00 0.00 4.17
6255 6673 2.426024 GAGGCGTCCACATTCAGTAGTA 59.574 50.000 0.00 0.00 0.00 1.82
6298 6716 0.523968 CAATTGCTTCGCATGACCCG 60.524 55.000 0.00 0.00 38.76 5.28
6301 6719 4.093408 TCTCTAACAATTGCTTCGCATGAC 59.907 41.667 5.05 0.00 38.76 3.06
6307 6725 5.578336 TCTGTGATCTCTAACAATTGCTTCG 59.422 40.000 5.05 0.00 0.00 3.79
6309 6727 5.879223 CCTCTGTGATCTCTAACAATTGCTT 59.121 40.000 5.05 2.09 0.00 3.91
6330 6748 7.040494 GGTAGAACCAGTAATGAAGTAACCTC 58.960 42.308 0.00 0.00 38.42 3.85
6344 6762 5.304686 TCAATTTGTGAGGTAGAACCAGT 57.695 39.130 0.00 0.00 41.95 4.00
6361 6779 6.016024 ACACAACATCTGCTACATGTTCAATT 60.016 34.615 2.30 0.00 41.58 2.32
6364 6782 4.388485 ACACAACATCTGCTACATGTTCA 58.612 39.130 2.30 1.71 41.58 3.18
6397 6815 0.035152 ATCCTTCATGAAGTGCCGCA 60.035 50.000 29.03 9.91 36.72 5.69
6401 6819 2.098770 GCCTCAATCCTTCATGAAGTGC 59.901 50.000 29.03 16.98 36.72 4.40
6439 6857 7.497579 TCCATAATCACTTATACGTTGTTGCAT 59.502 33.333 0.00 0.00 0.00 3.96
6444 6862 8.958119 ATTGTCCATAATCACTTATACGTTGT 57.042 30.769 0.00 0.00 0.00 3.32
6459 6877 9.559732 CTTAGACCACAATGATATTGTCCATAA 57.440 33.333 4.32 2.64 0.00 1.90
6460 6878 7.661437 GCTTAGACCACAATGATATTGTCCATA 59.339 37.037 4.32 0.00 0.00 2.74
6475 6893 3.008330 GAGACGTAGAGCTTAGACCACA 58.992 50.000 0.00 0.00 0.00 4.17
6482 6900 3.632604 CCCTCATTGAGACGTAGAGCTTA 59.367 47.826 15.36 0.00 0.00 3.09
6525 6943 2.417586 TCTCTGCAATCATCAAGCAACG 59.582 45.455 0.00 0.00 37.89 4.10
6527 6945 3.682696 AGTCTCTGCAATCATCAAGCAA 58.317 40.909 0.00 0.00 37.89 3.91
6528 6946 3.345508 AGTCTCTGCAATCATCAAGCA 57.654 42.857 0.00 0.00 36.72 3.91
6529 6947 5.808042 TTAAGTCTCTGCAATCATCAAGC 57.192 39.130 0.00 0.00 0.00 4.01
6553 6971 3.644335 AGTAGCCTTCCCGAATTCTAGT 58.356 45.455 3.52 0.00 0.00 2.57
6555 6973 5.836898 TCAATAGTAGCCTTCCCGAATTCTA 59.163 40.000 3.52 0.00 0.00 2.10
6590 7008 5.996513 AGCCACTGCATTAGATTCTCTATTG 59.003 40.000 0.00 3.00 41.13 1.90
6591 7009 6.183361 TGAGCCACTGCATTAGATTCTCTATT 60.183 38.462 0.00 0.00 41.13 1.73
6592 7010 5.306419 TGAGCCACTGCATTAGATTCTCTAT 59.694 40.000 0.00 0.00 41.13 1.98
6593 7011 4.651045 TGAGCCACTGCATTAGATTCTCTA 59.349 41.667 0.00 0.00 41.13 2.43
6605 7023 2.770132 CTAGCACGTGAGCCACTGCA 62.770 60.000 22.23 0.00 39.27 4.41
6607 7025 2.097038 GCTAGCACGTGAGCCACTG 61.097 63.158 22.23 2.37 34.23 3.66
6618 7036 2.124942 GCCCCACTCTGCTAGCAC 60.125 66.667 14.93 0.00 0.00 4.40
6635 7053 0.110238 CAGTTGGATTGTTCGCACGG 60.110 55.000 0.00 0.00 0.00 4.94
6650 7068 1.895131 GGTGCATCCATCCAAACAGTT 59.105 47.619 0.00 0.00 35.97 3.16
6652 7070 1.747355 GAGGTGCATCCATCCAAACAG 59.253 52.381 0.00 0.00 39.02 3.16
6679 7097 9.988350 CATCGTCTGCTAAAAGTTTAACAATAT 57.012 29.630 0.00 0.00 0.00 1.28
6685 7103 8.869897 CACTATCATCGTCTGCTAAAAGTTTAA 58.130 33.333 0.00 0.00 0.00 1.52
6690 7108 6.893958 AACACTATCATCGTCTGCTAAAAG 57.106 37.500 0.00 0.00 0.00 2.27
6726 7144 5.004361 AGACCTTCATGGCTAGCTCTATA 57.996 43.478 15.72 0.00 40.22 1.31
6727 7145 3.855668 AGACCTTCATGGCTAGCTCTAT 58.144 45.455 15.72 4.31 40.22 1.98
6730 7148 2.998316 AAGACCTTCATGGCTAGCTC 57.002 50.000 15.72 5.44 40.22 4.09
6733 7151 2.093447 ACGGAAAGACCTTCATGGCTAG 60.093 50.000 0.00 0.00 40.22 3.42
6735 7153 0.693049 ACGGAAAGACCTTCATGGCT 59.307 50.000 0.00 0.00 40.22 4.75
6761 7179 5.937975 AACATATATGGCAGGCAGTTTTT 57.062 34.783 16.96 0.00 0.00 1.94
6762 7180 5.937975 AAACATATATGGCAGGCAGTTTT 57.062 34.783 16.96 2.58 0.00 2.43
6763 7181 5.937975 AAAACATATATGGCAGGCAGTTT 57.062 34.783 16.96 4.20 0.00 2.66
6764 7182 5.890985 TGTAAAACATATATGGCAGGCAGTT 59.109 36.000 16.96 0.00 0.00 3.16
6765 7183 5.299279 GTGTAAAACATATATGGCAGGCAGT 59.701 40.000 16.96 0.00 0.00 4.40
6766 7184 5.299028 TGTGTAAAACATATATGGCAGGCAG 59.701 40.000 16.96 0.00 32.36 4.85
6767 7185 5.196695 TGTGTAAAACATATATGGCAGGCA 58.803 37.500 16.96 0.00 32.36 4.75
6768 7186 5.299279 ACTGTGTAAAACATATATGGCAGGC 59.701 40.000 16.96 5.08 38.39 4.85
6769 7187 6.542005 TCACTGTGTAAAACATATATGGCAGG 59.458 38.462 16.96 6.37 38.39 4.85
6770 7188 7.552458 TCACTGTGTAAAACATATATGGCAG 57.448 36.000 16.96 13.21 38.39 4.85
6771 7189 8.518430 AATCACTGTGTAAAACATATATGGCA 57.482 30.769 16.96 0.00 38.39 4.92
6772 7190 9.801873 AAAATCACTGTGTAAAACATATATGGC 57.198 29.630 16.96 2.87 38.39 4.40
6778 7196 9.891828 GTCATGAAAATCACTGTGTAAAACATA 57.108 29.630 7.79 0.00 38.39 2.29
6779 7197 8.632679 AGTCATGAAAATCACTGTGTAAAACAT 58.367 29.630 7.79 7.09 38.39 2.71
6780 7198 7.995289 AGTCATGAAAATCACTGTGTAAAACA 58.005 30.769 7.79 5.18 37.22 2.83
6781 7199 8.856490 AAGTCATGAAAATCACTGTGTAAAAC 57.144 30.769 7.79 0.00 0.00 2.43
6782 7200 9.299963 CAAAGTCATGAAAATCACTGTGTAAAA 57.700 29.630 7.79 0.00 0.00 1.52
6783 7201 7.920151 CCAAAGTCATGAAAATCACTGTGTAAA 59.080 33.333 7.79 0.00 0.00 2.01
6784 7202 7.424803 CCAAAGTCATGAAAATCACTGTGTAA 58.575 34.615 7.79 0.00 0.00 2.41
6785 7203 6.514870 GCCAAAGTCATGAAAATCACTGTGTA 60.515 38.462 7.79 0.00 0.00 2.90
6786 7204 5.737063 GCCAAAGTCATGAAAATCACTGTGT 60.737 40.000 7.79 0.00 0.00 3.72
6787 7205 4.682860 GCCAAAGTCATGAAAATCACTGTG 59.317 41.667 0.00 0.17 0.00 3.66
6788 7206 4.557296 CGCCAAAGTCATGAAAATCACTGT 60.557 41.667 0.00 0.00 0.00 3.55
6789 7207 3.916172 CGCCAAAGTCATGAAAATCACTG 59.084 43.478 0.00 0.00 0.00 3.66
6790 7208 3.612479 GCGCCAAAGTCATGAAAATCACT 60.612 43.478 0.00 0.00 0.00 3.41
6791 7209 2.663119 GCGCCAAAGTCATGAAAATCAC 59.337 45.455 0.00 0.00 0.00 3.06
6792 7210 2.295629 TGCGCCAAAGTCATGAAAATCA 59.704 40.909 4.18 0.00 0.00 2.57
6793 7211 2.663119 GTGCGCCAAAGTCATGAAAATC 59.337 45.455 4.18 0.00 0.00 2.17
6794 7212 2.035704 TGTGCGCCAAAGTCATGAAAAT 59.964 40.909 4.18 0.00 0.00 1.82
6795 7213 1.406898 TGTGCGCCAAAGTCATGAAAA 59.593 42.857 4.18 0.00 0.00 2.29
6796 7214 1.028130 TGTGCGCCAAAGTCATGAAA 58.972 45.000 4.18 0.00 0.00 2.69
6797 7215 0.310543 GTGTGCGCCAAAGTCATGAA 59.689 50.000 4.18 0.00 0.00 2.57
6798 7216 0.534877 AGTGTGCGCCAAAGTCATGA 60.535 50.000 4.18 0.00 0.00 3.07
6799 7217 1.155889 TAGTGTGCGCCAAAGTCATG 58.844 50.000 4.18 0.00 0.00 3.07
6800 7218 1.535462 GTTAGTGTGCGCCAAAGTCAT 59.465 47.619 4.18 0.00 0.00 3.06
6801 7219 0.941542 GTTAGTGTGCGCCAAAGTCA 59.058 50.000 4.18 0.00 0.00 3.41
6802 7220 1.194772 GAGTTAGTGTGCGCCAAAGTC 59.805 52.381 4.18 3.93 0.00 3.01
6803 7221 1.226746 GAGTTAGTGTGCGCCAAAGT 58.773 50.000 4.18 0.00 0.00 2.66
6804 7222 0.163788 CGAGTTAGTGTGCGCCAAAG 59.836 55.000 4.18 0.00 0.00 2.77
6805 7223 1.837538 GCGAGTTAGTGTGCGCCAAA 61.838 55.000 4.18 0.00 43.33 3.28
6806 7224 2.314647 GCGAGTTAGTGTGCGCCAA 61.315 57.895 4.18 0.00 43.33 4.52
6807 7225 2.736995 GCGAGTTAGTGTGCGCCA 60.737 61.111 4.18 0.00 43.33 5.69
6810 7228 2.430244 ACGGCGAGTTAGTGTGCG 60.430 61.111 16.62 0.00 0.00 5.34
6811 7229 2.092882 GGACGGCGAGTTAGTGTGC 61.093 63.158 16.62 0.00 0.00 4.57
6812 7230 0.732880 CAGGACGGCGAGTTAGTGTG 60.733 60.000 16.62 0.00 0.00 3.82
6813 7231 1.585006 CAGGACGGCGAGTTAGTGT 59.415 57.895 16.62 0.00 0.00 3.55
6814 7232 1.153823 CCAGGACGGCGAGTTAGTG 60.154 63.158 16.62 1.57 0.00 2.74
6815 7233 2.348888 CCCAGGACGGCGAGTTAGT 61.349 63.158 16.62 0.00 0.00 2.24
6816 7234 2.494918 CCCAGGACGGCGAGTTAG 59.505 66.667 16.62 0.00 0.00 2.34
6817 7235 3.766691 GCCCAGGACGGCGAGTTA 61.767 66.667 16.62 0.00 39.64 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.