Multiple sequence alignment - TraesCS3A01G446400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G446400 chr3A 100.000 3371 0 0 1 3371 686786548 686783178 0.000000e+00 6226
1 TraesCS3A01G446400 chr3D 95.886 2528 89 6 94 2611 549517038 549514516 0.000000e+00 4078
2 TraesCS3A01G446400 chr3D 90.374 374 29 5 2604 2975 549514491 549514123 5.060000e-133 484
3 TraesCS3A01G446400 chr3D 94.318 88 5 0 1 88 549517262 549517175 5.870000e-28 135
4 TraesCS3A01G446400 chr3B 94.653 2525 99 8 90 2611 728921463 728918972 0.000000e+00 3882
5 TraesCS3A01G446400 chr3B 86.076 790 63 20 2596 3358 728918956 728918187 0.000000e+00 806
6 TraesCS3A01G446400 chr3B 96.591 88 3 0 1 88 728921635 728921548 2.710000e-31 147
7 TraesCS3A01G446400 chr7D 83.730 252 22 9 3133 3371 21090832 21090587 1.570000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G446400 chr3A 686783178 686786548 3370 True 6226.000000 6226 100.000 1 3371 1 chr3A.!!$R1 3370
1 TraesCS3A01G446400 chr3D 549514123 549517262 3139 True 1565.666667 4078 93.526 1 2975 3 chr3D.!!$R1 2974
2 TraesCS3A01G446400 chr3B 728918187 728921635 3448 True 1611.666667 3882 92.440 1 3358 3 chr3B.!!$R1 3357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 251 0.102481 ACACGACGATGGCATACTCC 59.898 55.0 0.00 0.0 0.00 3.85 F
541 682 0.743701 CAGAGATGGACACTGCTGCC 60.744 60.0 0.00 0.0 31.36 4.85 F
1090 1231 0.758685 CAAGTCCCCAACAAGGCCAA 60.759 55.0 5.01 0.0 35.39 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1578 0.933097 CAATGACGATGAGCTTCCCG 59.067 55.0 0.0 0.0 0.0 5.14 R
2346 2487 0.806868 CTTTGATGGTCACGCTGCAT 59.193 50.0 0.0 0.0 0.0 3.96 R
2951 3136 0.617413 CTCCAGGAATGAGGCAGTGT 59.383 55.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.217393 CCAGCAATAATCATTTCGACATGG 58.783 41.667 11.47 0.00 0.00 3.66
79 80 2.294791 CCGTAGTTCCTCTCATGCTAGG 59.705 54.545 6.80 6.80 0.00 3.02
88 89 3.386078 CCTCTCATGCTAGGAACAGCTAA 59.614 47.826 7.25 0.00 42.30 3.09
97 229 5.350365 TGCTAGGAACAGCTAATTGTTTACG 59.650 40.000 0.00 0.00 41.15 3.18
116 248 1.484356 GGTACACGACGATGGCATAC 58.516 55.000 0.00 0.00 0.00 2.39
119 251 0.102481 ACACGACGATGGCATACTCC 59.898 55.000 0.00 0.00 0.00 3.85
133 267 5.071653 TGGCATACTCCATATTTGCTGTCTA 59.928 40.000 0.00 0.00 33.86 2.59
147 281 3.128764 TGCTGTCTATTGGTAGTGTCGAG 59.871 47.826 0.00 0.00 0.00 4.04
295 430 1.040646 GACACTCCTCACACTGTGGA 58.959 55.000 13.09 5.84 37.67 4.02
315 450 6.265196 TGTGGATGTCATAGAAAAACTGCTTT 59.735 34.615 0.00 0.00 0.00 3.51
489 630 5.221843 ACAGTTCCTACTTGGTGCTAAATCA 60.222 40.000 0.00 0.00 37.07 2.57
541 682 0.743701 CAGAGATGGACACTGCTGCC 60.744 60.000 0.00 0.00 31.36 4.85
701 842 3.393609 AGGGAGGAAACGGTTTCTACTTT 59.606 43.478 27.25 12.15 39.59 2.66
732 873 3.376546 GGAGACAAGTGCTGATTCAATCC 59.623 47.826 0.00 0.00 0.00 3.01
759 900 8.849168 GGGAAAACAATTCCAAAAATTCTCATT 58.151 29.630 9.27 0.00 40.32 2.57
872 1013 2.158158 TCCCATAGGAGACGGATTCCAT 60.158 50.000 3.09 0.00 37.19 3.41
1090 1231 0.758685 CAAGTCCCCAACAAGGCCAA 60.759 55.000 5.01 0.00 35.39 4.52
1391 1532 1.128188 AAGAACACCCCTCTTCCGCT 61.128 55.000 0.00 0.00 0.00 5.52
1437 1578 1.757682 TTGGTGTGGTTGTCCTTGAC 58.242 50.000 0.00 0.00 34.23 3.18
1818 1959 5.128827 AGAGGTCAACGGTGTGATATATGTT 59.871 40.000 0.00 0.00 0.00 2.71
1946 2087 2.065899 TGCTTTGGGTGTAGCTTTGT 57.934 45.000 0.00 0.00 38.22 2.83
2016 2157 3.194116 ACTCCCGTTACATTGACGTGTAT 59.806 43.478 0.00 0.00 38.77 2.29
2205 2346 1.373748 TAGTTCCAGCACGCGGTTC 60.374 57.895 12.47 0.00 0.00 3.62
2319 2460 0.950555 GCTCTGAATGGTGCACGTCA 60.951 55.000 11.45 12.87 0.00 4.35
2367 2508 1.580845 GCAGCGTGACCATCAAAGCT 61.581 55.000 4.74 4.74 41.25 3.74
2388 2529 1.383248 ATGCTCTAGCTCGGGGGTT 60.383 57.895 3.26 0.00 42.66 4.11
2413 2554 8.034313 TGCTGAAGGATGATACCTAAGTTTAT 57.966 34.615 0.00 0.00 39.62 1.40
2430 2572 4.228210 AGTTTATTCCTGCCTCATCTTCCA 59.772 41.667 0.00 0.00 0.00 3.53
2433 2575 1.588239 TCCTGCCTCATCTTCCACAT 58.412 50.000 0.00 0.00 0.00 3.21
2440 2582 4.943705 TGCCTCATCTTCCACATTTAAGAC 59.056 41.667 0.00 0.00 34.70 3.01
2478 2620 1.795768 TCGTTTGCTCCTACTTGCTG 58.204 50.000 0.00 0.00 0.00 4.41
2557 2699 2.979676 TTGCTTGCTGACAGCGGG 60.980 61.111 22.00 17.06 46.26 6.13
2714 2892 4.380233 CCTCACATTGGTTCAGAGATTTGC 60.380 45.833 0.00 0.00 0.00 3.68
2715 2893 3.507233 TCACATTGGTTCAGAGATTTGCC 59.493 43.478 0.00 0.00 0.00 4.52
2754 2932 6.732896 AGAGGTAGTTGAGAAAAGAAGTGA 57.267 37.500 0.00 0.00 0.00 3.41
2813 2998 3.753272 GCAAGTGAGATCAGCCTTTGTTA 59.247 43.478 0.00 0.00 0.00 2.41
2900 3085 4.846779 TCCAAATGTTCCAAGCAGTAAC 57.153 40.909 0.00 0.00 0.00 2.50
2951 3136 6.754193 CAGAATGGTTTTGTTTAGCCCTTTA 58.246 36.000 0.00 0.00 0.00 1.85
2962 3147 0.995024 AGCCCTTTACACTGCCTCAT 59.005 50.000 0.00 0.00 0.00 2.90
2975 3160 0.182061 GCCTCATTCCTGGAGCATCA 59.818 55.000 0.00 0.00 36.25 3.07
2984 3169 2.968574 TCCTGGAGCATCAAGAGGTATC 59.031 50.000 0.00 0.00 38.98 2.24
2997 3182 3.946824 AGAGGTATCACTGGATTCCCAT 58.053 45.455 0.00 0.00 40.75 4.00
3002 3187 3.589951 ATCACTGGATTCCCATTCTGG 57.410 47.619 0.00 0.00 42.59 3.86
3003 3188 1.064463 TCACTGGATTCCCATTCTGGC 60.064 52.381 0.00 0.00 42.59 4.85
3011 3196 1.077265 CCCATTCTGGCCCAACAGT 59.923 57.895 0.00 0.00 39.48 3.55
3013 3198 1.341080 CCATTCTGGCCCAACAGTTT 58.659 50.000 0.00 0.00 39.48 2.66
3066 3251 6.690194 CTCAAAAAGTAGAGCATGGCTATT 57.310 37.500 0.00 0.00 39.88 1.73
3067 3252 6.441093 TCAAAAAGTAGAGCATGGCTATTG 57.559 37.500 0.00 0.00 39.88 1.90
3084 3269 5.251764 GCTATTGCCAATCTGATAGGACAT 58.748 41.667 0.00 0.00 0.00 3.06
3091 3276 6.270695 TGCCAATCTGATAGGACATATCTGAA 59.729 38.462 17.13 2.31 46.06 3.02
3092 3277 6.593382 GCCAATCTGATAGGACATATCTGAAC 59.407 42.308 17.13 7.12 46.06 3.18
3093 3278 7.526860 GCCAATCTGATAGGACATATCTGAACT 60.527 40.741 17.13 7.93 46.06 3.01
3094 3279 8.034215 CCAATCTGATAGGACATATCTGAACTC 58.966 40.741 17.13 0.00 46.06 3.01
3095 3280 8.583296 CAATCTGATAGGACATATCTGAACTCA 58.417 37.037 17.13 0.00 46.06 3.41
3096 3281 8.898303 ATCTGATAGGACATATCTGAACTCAT 57.102 34.615 17.13 2.31 46.06 2.90
3097 3282 8.718158 TCTGATAGGACATATCTGAACTCATT 57.282 34.615 12.55 0.00 42.56 2.57
3131 3316 7.625185 GCCAATCTGATAGTGTCTTCTTTTGAC 60.625 40.741 0.00 0.00 35.21 3.18
3140 3325 5.946377 AGTGTCTTCTTTTGACCATATTCCC 59.054 40.000 0.00 0.00 33.83 3.97
3149 3334 4.220693 TGACCATATTCCCAGTGTTCAG 57.779 45.455 0.00 0.00 0.00 3.02
3158 3343 1.679139 CCAGTGTTCAGCCTGTCAAA 58.321 50.000 0.00 0.00 0.00 2.69
3197 3392 7.370383 TGAGCTTCATTTGTAACTTGGATTTC 58.630 34.615 0.00 0.00 0.00 2.17
3221 3416 0.322456 TCCATTTGAACGGCTCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
3224 3419 0.539438 ATTTGAACGGCTCCTGGCAA 60.539 50.000 0.00 0.00 44.01 4.52
3240 3435 4.008330 CTGGCAAGTGATTTCTCTGTGAT 58.992 43.478 0.00 0.00 0.00 3.06
3246 3441 6.813649 GCAAGTGATTTCTCTGTGATAGTACA 59.186 38.462 0.00 0.00 0.00 2.90
3296 3491 0.475632 ATAGCCCGATCCCCATGGAA 60.476 55.000 15.22 0.35 45.98 3.53
3305 3500 2.530460 TCCCCATGGAAATGACCAAG 57.470 50.000 15.22 0.00 43.47 3.61
3320 3515 3.222603 GACCAAGGTGTCCAAATCACTT 58.777 45.455 0.00 0.00 36.25 3.16
3330 3528 4.458989 TGTCCAAATCACTTAACTCCATGC 59.541 41.667 0.00 0.00 0.00 4.06
3352 3550 4.201990 GCTGGAAGGTTTGCTAATCATGAG 60.202 45.833 0.09 0.00 0.00 2.90
3358 3556 4.884164 AGGTTTGCTAATCATGAGGCTTAC 59.116 41.667 15.65 13.08 0.00 2.34
3359 3557 4.640201 GGTTTGCTAATCATGAGGCTTACA 59.360 41.667 15.65 1.93 0.00 2.41
3360 3558 5.300286 GGTTTGCTAATCATGAGGCTTACAT 59.700 40.000 15.65 0.00 0.00 2.29
3361 3559 6.486657 GGTTTGCTAATCATGAGGCTTACATA 59.513 38.462 15.65 0.00 0.00 2.29
3362 3560 7.175641 GGTTTGCTAATCATGAGGCTTACATAT 59.824 37.037 15.65 0.00 0.00 1.78
3363 3561 8.571336 GTTTGCTAATCATGAGGCTTACATATT 58.429 33.333 15.65 0.00 0.00 1.28
3364 3562 7.912056 TGCTAATCATGAGGCTTACATATTC 57.088 36.000 15.65 0.00 0.00 1.75
3365 3563 7.452562 TGCTAATCATGAGGCTTACATATTCA 58.547 34.615 15.65 0.00 0.00 2.57
3366 3564 7.605309 TGCTAATCATGAGGCTTACATATTCAG 59.395 37.037 15.65 0.00 0.00 3.02
3367 3565 6.814506 AATCATGAGGCTTACATATTCAGC 57.185 37.500 0.09 0.00 0.00 4.26
3368 3566 4.309933 TCATGAGGCTTACATATTCAGCG 58.690 43.478 0.00 0.00 34.09 5.18
3369 3567 3.819564 TGAGGCTTACATATTCAGCGT 57.180 42.857 0.00 0.00 34.09 5.07
3370 3568 3.457234 TGAGGCTTACATATTCAGCGTG 58.543 45.455 0.00 0.00 34.09 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.118884 TCATAAGGTCCCGTAGCAGAAAC 60.119 47.826 0.00 0.00 0.00 2.78
79 80 6.301861 GTGTACCGTAAACAATTAGCTGTTC 58.698 40.000 0.00 0.00 38.59 3.18
88 89 3.281341 TCGTCGTGTACCGTAAACAAT 57.719 42.857 0.00 0.00 37.94 2.71
97 229 1.066605 AGTATGCCATCGTCGTGTACC 59.933 52.381 0.00 0.00 0.00 3.34
113 245 7.749666 ACCAATAGACAGCAAATATGGAGTAT 58.250 34.615 0.00 0.00 0.00 2.12
116 248 7.172190 CACTACCAATAGACAGCAAATATGGAG 59.828 40.741 0.00 0.00 32.23 3.86
119 251 7.306807 CGACACTACCAATAGACAGCAAATATG 60.307 40.741 0.00 0.00 32.23 1.78
133 267 1.478510 CTGAGGCTCGACACTACCAAT 59.521 52.381 10.42 0.00 0.00 3.16
147 281 3.416156 AGACACAAGAAATTCCTGAGGC 58.584 45.455 0.00 0.00 0.00 4.70
279 414 1.620819 GACATCCACAGTGTGAGGAGT 59.379 52.381 24.99 15.98 40.37 3.85
295 430 7.981225 ACAACAAAAGCAGTTTTTCTATGACAT 59.019 29.630 0.00 0.00 36.87 3.06
315 450 4.158025 TCAAACTCCGCCTTTTAACAACAA 59.842 37.500 0.00 0.00 0.00 2.83
536 677 2.033151 CGTTTTACTATTAGCCGGCAGC 60.033 50.000 31.54 5.20 44.25 5.25
541 682 8.325997 GCCATATAATCGTTTTACTATTAGCCG 58.674 37.037 0.00 0.00 0.00 5.52
582 723 4.546829 AGGAACAAACAGGCGTAAGATA 57.453 40.909 0.00 0.00 43.02 1.98
583 724 3.418684 AGGAACAAACAGGCGTAAGAT 57.581 42.857 0.00 0.00 43.02 2.40
590 731 2.230660 AGTTGCTAGGAACAAACAGGC 58.769 47.619 26.40 0.00 0.00 4.85
594 735 5.273944 CAGTCAAAGTTGCTAGGAACAAAC 58.726 41.667 26.40 17.63 0.00 2.93
701 842 6.544928 TCAGCACTTGTCTCCTTATTGATA 57.455 37.500 0.00 0.00 0.00 2.15
732 873 6.481644 TGAGAATTTTTGGAATTGTTTTCCCG 59.518 34.615 2.11 0.00 37.79 5.14
872 1013 1.066502 TGGCTCGAATGGAACGATTCA 60.067 47.619 9.42 0.00 39.02 2.57
1125 1266 6.543465 CAGGGATTAAAGCACAGTATTGATCA 59.457 38.462 0.00 0.00 0.00 2.92
1437 1578 0.933097 CAATGACGATGAGCTTCCCG 59.067 55.000 0.00 0.00 0.00 5.14
1547 1688 9.230122 TGTACTTTATTTTTCTGATGCATGAGA 57.770 29.630 12.19 12.19 0.00 3.27
1946 2087 2.102420 CCCATGACGTACATCTTGCCTA 59.898 50.000 0.00 0.00 37.07 3.93
2016 2157 3.489355 CCAGGCATGGCTATTTGTATCA 58.511 45.455 22.88 0.00 40.52 2.15
2205 2346 1.068281 CCATCATGTGTCCCGAGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
2239 2380 2.233431 CAGGTTCTTCCTCCAGTGAGAG 59.767 54.545 0.00 0.00 46.24 3.20
2319 2460 4.394712 CCCGACGGCCTGAGCTTT 62.395 66.667 8.86 0.00 39.73 3.51
2346 2487 0.806868 CTTTGATGGTCACGCTGCAT 59.193 50.000 0.00 0.00 0.00 3.96
2351 2492 0.874390 TCAAGCTTTGATGGTCACGC 59.126 50.000 0.00 0.00 34.08 5.34
2367 2508 1.402896 CCCCCGAGCTAGAGCATCAA 61.403 60.000 4.01 0.00 45.16 2.57
2388 2529 5.957771 AACTTAGGTATCATCCTTCAGCA 57.042 39.130 0.00 0.00 38.86 4.41
2413 2554 1.361204 TGTGGAAGATGAGGCAGGAA 58.639 50.000 0.00 0.00 0.00 3.36
2430 2572 5.453198 CCAAACAAAGCCTGGTCTTAAATGT 60.453 40.000 0.00 0.00 0.00 2.71
2433 2575 4.027437 ACCAAACAAAGCCTGGTCTTAAA 58.973 39.130 0.00 0.00 39.27 1.52
2440 2582 3.005367 ACGATAAACCAAACAAAGCCTGG 59.995 43.478 0.00 0.00 36.24 4.45
2478 2620 2.034179 GCAACAAGCGGATATAAACCCC 59.966 50.000 0.00 0.00 0.00 4.95
2557 2699 3.545703 ACAGAGTACATTATGGCAAGGC 58.454 45.455 0.00 0.00 0.00 4.35
2618 2791 4.164413 GCCCCTCCTACTATTTCAAAGTCT 59.836 45.833 0.00 0.00 0.00 3.24
2638 2814 9.907229 AAATTTAATATAGCATAGTAGGAGCCC 57.093 33.333 0.00 0.00 0.00 5.19
2714 2892 3.077359 CCTCTAGTTCCTGCTTTGTTGG 58.923 50.000 0.00 0.00 0.00 3.77
2715 2893 3.744660 ACCTCTAGTTCCTGCTTTGTTG 58.255 45.455 0.00 0.00 0.00 3.33
2722 2900 4.017808 TCTCAACTACCTCTAGTTCCTGC 58.982 47.826 0.00 0.00 40.64 4.85
2754 2932 6.750660 ATCCTCTGATCTCAGTGATTTCAT 57.249 37.500 10.11 0.00 44.12 2.57
2813 2998 5.957771 TCCAGTAGAGCATGGTTAGAAAT 57.042 39.130 0.00 0.00 37.84 2.17
2864 3049 5.406163 ACATTTGGAAGGAGAGGGAAAAAT 58.594 37.500 0.00 0.00 0.00 1.82
2868 3053 3.245264 GGAACATTTGGAAGGAGAGGGAA 60.245 47.826 0.00 0.00 0.00 3.97
2870 3055 2.041620 TGGAACATTTGGAAGGAGAGGG 59.958 50.000 0.00 0.00 0.00 4.30
2951 3136 0.617413 CTCCAGGAATGAGGCAGTGT 59.383 55.000 0.00 0.00 0.00 3.55
2962 3147 1.661463 ACCTCTTGATGCTCCAGGAA 58.339 50.000 0.00 0.00 0.00 3.36
2975 3160 3.736094 TGGGAATCCAGTGATACCTCTT 58.264 45.455 0.09 0.00 38.32 2.85
2997 3182 3.383185 CAGTAAAAACTGTTGGGCCAGAA 59.617 43.478 6.23 0.00 36.30 3.02
3002 3187 4.803613 CACTTTCAGTAAAAACTGTTGGGC 59.196 41.667 5.51 0.00 38.75 5.36
3003 3188 4.803613 GCACTTTCAGTAAAAACTGTTGGG 59.196 41.667 5.51 0.76 38.75 4.12
3011 3196 9.677567 GATATTCAACTGCACTTTCAGTAAAAA 57.322 29.630 0.00 0.00 45.77 1.94
3013 3198 8.389779 TGATATTCAACTGCACTTTCAGTAAA 57.610 30.769 0.00 0.00 45.77 2.01
3061 3246 4.645535 TGTCCTATCAGATTGGCAATAGC 58.354 43.478 13.65 1.39 41.10 2.97
3062 3247 8.484575 AGATATGTCCTATCAGATTGGCAATAG 58.515 37.037 13.65 9.16 39.03 1.73
3063 3248 8.262933 CAGATATGTCCTATCAGATTGGCAATA 58.737 37.037 13.65 0.00 39.03 1.90
3064 3249 7.037802 TCAGATATGTCCTATCAGATTGGCAAT 60.038 37.037 13.54 13.54 39.03 3.56
3066 3251 5.781818 TCAGATATGTCCTATCAGATTGGCA 59.218 40.000 6.03 7.93 39.03 4.92
3067 3252 6.291648 TCAGATATGTCCTATCAGATTGGC 57.708 41.667 6.03 2.90 39.03 4.52
3069 3254 8.583296 TGAGTTCAGATATGTCCTATCAGATTG 58.417 37.037 0.00 0.00 39.03 2.67
3074 3259 9.593565 AGTAATGAGTTCAGATATGTCCTATCA 57.406 33.333 0.00 0.00 39.03 2.15
3084 3269 6.888105 TGGCAATGAGTAATGAGTTCAGATA 58.112 36.000 0.00 0.00 0.00 1.98
3091 3276 5.748402 TCAGATTGGCAATGAGTAATGAGT 58.252 37.500 19.07 0.00 0.00 3.41
3092 3277 6.879276 ATCAGATTGGCAATGAGTAATGAG 57.121 37.500 19.07 0.00 0.00 2.90
3093 3278 7.443272 CACTATCAGATTGGCAATGAGTAATGA 59.557 37.037 19.07 11.42 0.00 2.57
3094 3279 7.228108 ACACTATCAGATTGGCAATGAGTAATG 59.772 37.037 19.07 10.55 0.00 1.90
3095 3280 7.285566 ACACTATCAGATTGGCAATGAGTAAT 58.714 34.615 19.07 6.45 0.00 1.89
3096 3281 6.653020 ACACTATCAGATTGGCAATGAGTAA 58.347 36.000 19.07 0.00 0.00 2.24
3097 3282 6.098838 AGACACTATCAGATTGGCAATGAGTA 59.901 38.462 19.07 4.49 0.00 2.59
3131 3316 2.092212 AGGCTGAACACTGGGAATATGG 60.092 50.000 0.00 0.00 0.00 2.74
3140 3325 3.129287 ACTTTTTGACAGGCTGAACACTG 59.871 43.478 23.66 7.88 40.48 3.66
3149 3334 6.430000 TCAAGGTCTATTACTTTTTGACAGGC 59.570 38.462 0.00 0.00 0.00 4.85
3158 3343 8.734386 CAAATGAAGCTCAAGGTCTATTACTTT 58.266 33.333 0.00 0.00 0.00 2.66
3197 3392 2.417243 GGAGCCGTTCAAATGGATTTGG 60.417 50.000 11.30 0.00 45.39 3.28
3204 3399 1.243342 TGCCAGGAGCCGTTCAAATG 61.243 55.000 0.00 0.00 42.71 2.32
3216 3411 2.373169 ACAGAGAAATCACTTGCCAGGA 59.627 45.455 0.00 0.00 0.00 3.86
3221 3416 6.813649 TGTACTATCACAGAGAAATCACTTGC 59.186 38.462 0.00 0.00 0.00 4.01
3275 3470 0.035056 CCATGGGGATCGGGCTATTC 60.035 60.000 2.85 0.00 35.59 1.75
3282 3477 1.609208 GTCATTTCCATGGGGATCGG 58.391 55.000 13.02 0.00 44.48 4.18
3284 3479 2.754012 TGGTCATTTCCATGGGGATC 57.246 50.000 13.02 5.96 44.48 3.36
3296 3491 3.573967 GTGATTTGGACACCTTGGTCATT 59.426 43.478 0.00 0.00 39.59 2.57
3305 3500 4.394729 TGGAGTTAAGTGATTTGGACACC 58.605 43.478 0.00 0.00 38.82 4.16
3330 3528 4.337555 CCTCATGATTAGCAAACCTTCCAG 59.662 45.833 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.