Multiple sequence alignment - TraesCS3A01G446300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G446300 chr3A 100.000 6805 0 0 1 6805 686781918 686775114 0.000000e+00 12567.0
1 TraesCS3A01G446300 chr3A 96.667 60 2 0 6438 6497 496108657 496108716 4.340000e-17 100.0
2 TraesCS3A01G446300 chr3D 94.797 2960 100 28 3420 6343 549509110 549506169 0.000000e+00 4564.0
3 TraesCS3A01G446300 chr3D 96.622 1273 37 1 934 2200 549511496 549510224 0.000000e+00 2108.0
4 TraesCS3A01G446300 chr3D 92.841 894 59 2 1 892 549512870 549511980 0.000000e+00 1291.0
5 TraesCS3A01G446300 chr3D 94.887 665 30 3 2747 3411 549509824 549509164 0.000000e+00 1037.0
6 TraesCS3A01G446300 chr3D 92.371 367 10 8 2217 2570 549510238 549509877 2.190000e-139 507.0
7 TraesCS3A01G446300 chr3D 88.235 289 27 5 6492 6776 549506171 549505886 8.450000e-89 339.0
8 TraesCS3A01G446300 chr3D 97.115 104 3 0 2455 2558 549509924 549509821 7.010000e-40 176.0
9 TraesCS3A01G446300 chr3D 100.000 43 0 0 5910 5952 549506545 549506503 5.660000e-11 80.5
10 TraesCS3A01G446300 chr3B 94.684 2577 84 26 3418 5952 728912759 728910194 0.000000e+00 3951.0
11 TraesCS3A01G446300 chr3B 93.720 1242 54 10 971 2204 728915033 728913808 0.000000e+00 1840.0
12 TraesCS3A01G446300 chr3B 92.097 620 31 3 2747 3366 728913432 728912831 0.000000e+00 857.0
13 TraesCS3A01G446300 chr3B 92.289 402 20 7 5952 6351 728910238 728909846 1.660000e-155 560.0
14 TraesCS3A01G446300 chr3B 95.238 357 10 3 2217 2571 728913826 728913475 5.960000e-155 558.0
15 TraesCS3A01G446300 chr3B 80.597 268 17 11 6556 6790 728909203 728908938 2.520000e-39 174.0
16 TraesCS3A01G446300 chr5B 98.958 192 0 2 2556 2745 144591461 144591270 6.540000e-90 342.0
17 TraesCS3A01G446300 chr5B 99.462 186 0 1 2561 2745 225521764 225521949 3.040000e-88 337.0
18 TraesCS3A01G446300 chr5B 99.462 186 0 1 2560 2744 245830117 245829932 3.040000e-88 337.0
19 TraesCS3A01G446300 chr5B 98.980 98 1 0 6340 6437 534512070 534511973 7.010000e-40 176.0
20 TraesCS3A01G446300 chr5B 98.246 57 1 0 6438 6494 534512002 534511946 4.340000e-17 100.0
21 TraesCS3A01G446300 chr6A 99.465 187 0 1 2561 2746 144524102 144524288 8.450000e-89 339.0
22 TraesCS3A01G446300 chr6A 97.938 97 2 0 6341 6437 116863044 116863140 1.170000e-37 169.0
23 TraesCS3A01G446300 chr6A 98.246 57 1 0 6438 6494 116863111 116863167 4.340000e-17 100.0
24 TraesCS3A01G446300 chr2A 98.947 190 0 1 2557 2744 119305672 119305861 8.450000e-89 339.0
25 TraesCS3A01G446300 chr4B 97.015 201 5 1 2559 2758 498382499 498382299 3.040000e-88 337.0
26 TraesCS3A01G446300 chr4A 99.462 186 0 1 2561 2745 514417745 514417560 3.040000e-88 337.0
27 TraesCS3A01G446300 chr4A 97.959 98 2 0 6340 6437 661479089 661479186 3.260000e-38 171.0
28 TraesCS3A01G446300 chr1A 99.462 186 0 1 2561 2745 554528433 554528618 3.040000e-88 337.0
29 TraesCS3A01G446300 chr1B 96.517 201 5 2 2556 2754 80963827 80964027 1.410000e-86 331.0
30 TraesCS3A01G446300 chrUn 98.980 98 1 0 6340 6437 266938675 266938772 7.010000e-40 176.0
31 TraesCS3A01G446300 chrUn 98.246 57 1 0 6438 6494 266938743 266938799 4.340000e-17 100.0
32 TraesCS3A01G446300 chr5A 98.947 95 1 0 6343 6437 86548587 86548493 3.260000e-38 171.0
33 TraesCS3A01G446300 chr2B 98.947 95 1 0 6343 6437 58667112 58667206 3.260000e-38 171.0
34 TraesCS3A01G446300 chr2B 96.154 104 4 0 6334 6437 375091616 375091513 3.260000e-38 171.0
35 TraesCS3A01G446300 chr2B 97.938 97 2 0 6341 6437 799758882 799758978 1.170000e-37 169.0
36 TraesCS3A01G446300 chr2B 98.246 57 1 0 6438 6494 799758949 799759005 4.340000e-17 100.0
37 TraesCS3A01G446300 chr1D 98.947 95 1 0 6343 6437 391969809 391969903 3.260000e-38 171.0
38 TraesCS3A01G446300 chr1D 98.182 55 1 0 6438 6492 391969874 391969928 5.620000e-16 97.1
39 TraesCS3A01G446300 chr6B 95.312 64 1 1 6438 6501 146351731 146351670 4.340000e-17 100.0
40 TraesCS3A01G446300 chr6B 93.750 64 4 0 6438 6501 200731967 200731904 5.620000e-16 97.1
41 TraesCS3A01G446300 chr2D 98.182 55 1 0 6438 6492 421796915 421796861 5.620000e-16 97.1
42 TraesCS3A01G446300 chr5D 80.000 80 16 0 612 691 344979786 344979707 7.370000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G446300 chr3A 686775114 686781918 6804 True 12567.000000 12567 100.0000 1 6805 1 chr3A.!!$R1 6804
1 TraesCS3A01G446300 chr3D 549505886 549512870 6984 True 1262.812500 4564 94.6085 1 6776 8 chr3D.!!$R1 6775
2 TraesCS3A01G446300 chr3B 728908938 728915033 6095 True 1323.333333 3951 91.4375 971 6790 6 chr3B.!!$R1 5819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 410 0.035152 ACATCTGATGCCCGCTCAAA 60.035 50.0 17.24 0.0 0.00 2.69 F
783 786 0.999406 CGACATGACTAAGGCCGTTG 59.001 55.0 0.00 0.0 0.00 4.10 F
2588 3055 0.174162 TAAAGCGTCCCTAAGGCGAC 59.826 55.0 0.00 0.0 43.57 5.19 F
3383 3850 0.107312 GACACATGGGCTCTGCAGAT 60.107 55.0 18.63 0.0 0.00 2.90 F
4556 5108 0.763652 ATGCTTCTGATGGCGAGGAT 59.236 50.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2410 0.671472 TGAGCTGAAGCATGACACGG 60.671 55.000 4.90 0.0 45.16 4.94 R
2632 3099 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.0 30.80 3.13 R
4580 5132 2.136298 TCTCCATCTGCTCTTCGTCT 57.864 50.000 0.00 0.0 0.00 4.18 R
5329 5885 3.971245 GAAGATGTGGTGTCTTCCTCT 57.029 47.619 4.89 0.0 43.59 3.69 R
6429 6989 0.032813 ATTTGCAGGGATCCAGGTGG 60.033 55.000 15.23 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.113838 GACACTAATCAACTATGGATTTGTCAT 57.886 33.333 11.91 0.00 39.73 3.06
104 105 9.591792 ACTTTTAGGGATTATAGACACGTTTAC 57.408 33.333 0.00 0.00 0.00 2.01
153 156 6.987403 ACCTTTTTGAAACATTTAGGGCTA 57.013 33.333 0.00 0.00 0.00 3.93
157 160 9.283768 CCTTTTTGAAACATTTAGGGCTAATTT 57.716 29.630 0.00 0.00 0.00 1.82
203 206 7.311046 CCCATATGATTTCTTCCTACGGGATTA 60.311 40.741 3.65 0.00 41.87 1.75
211 214 4.833380 TCTTCCTACGGGATTATCTTCTGG 59.167 45.833 0.00 0.00 41.87 3.86
236 239 7.186804 GGTATGTCATTTGTTCCATAGAAACG 58.813 38.462 0.00 0.00 32.58 3.60
239 242 7.731882 TGTCATTTGTTCCATAGAAACGTAA 57.268 32.000 0.00 0.00 32.58 3.18
303 306 9.959721 CCTAATTTATAAGGGCTCTTAGCATTA 57.040 33.333 12.50 11.84 44.75 1.90
316 319 6.398234 TCTTAGCATTAGACCTGATCTCAC 57.602 41.667 0.00 0.00 39.04 3.51
326 329 4.282195 AGACCTGATCTCACGAGAAGTTTT 59.718 41.667 0.00 0.00 41.36 2.43
365 368 5.942872 AGAAGGCATTTCAATTCTACAACG 58.057 37.500 3.45 0.00 38.31 4.10
407 410 0.035152 ACATCTGATGCCCGCTCAAA 60.035 50.000 17.24 0.00 0.00 2.69
435 438 4.398358 TGATCTGAGTTAACGATCGTTCCT 59.602 41.667 34.78 29.01 39.31 3.36
441 444 5.293814 TGAGTTAACGATCGTTCCTCTAGAG 59.706 44.000 35.42 13.18 39.31 2.43
505 508 6.205464 ACGATCACTTTAGAATTGCCATATGG 59.795 38.462 18.07 18.07 38.53 2.74
528 531 8.495160 TGGAACGGATAACTTATAGGGAATTA 57.505 34.615 0.00 0.00 0.00 1.40
601 604 3.820557 AGAACCGCCATGCTACATTAAT 58.179 40.909 0.00 0.00 0.00 1.40
649 652 7.340999 TGCTCTAAAAACTAAAACTTTCACCCT 59.659 33.333 0.00 0.00 0.00 4.34
651 654 8.810990 TCTAAAAACTAAAACTTTCACCCTGA 57.189 30.769 0.00 0.00 0.00 3.86
653 656 9.863845 CTAAAAACTAAAACTTTCACCCTGAAA 57.136 29.630 0.00 0.00 43.37 2.69
685 688 2.981859 ATTGTTATCCGGAGCGAACT 57.018 45.000 20.96 3.62 0.00 3.01
737 740 1.005867 GGGTACGTGGAAGCGAACA 60.006 57.895 0.00 0.00 35.59 3.18
740 743 1.494824 GTACGTGGAAGCGAACACTT 58.505 50.000 0.00 0.44 35.51 3.16
741 744 1.862827 GTACGTGGAAGCGAACACTTT 59.137 47.619 0.00 0.00 35.51 2.66
742 745 2.228138 ACGTGGAAGCGAACACTTTA 57.772 45.000 0.00 0.00 35.51 1.85
751 754 8.662141 GTGGAAGCGAACACTTTATTAGAATTA 58.338 33.333 0.00 0.00 34.84 1.40
754 757 9.903185 GAAGCGAACACTTTATTAGAATTAGTC 57.097 33.333 0.00 0.00 0.00 2.59
757 760 7.009907 GCGAACACTTTATTAGAATTAGTCCGT 59.990 37.037 0.00 0.00 0.00 4.69
778 781 1.689273 AGGATCCGACATGACTAAGGC 59.311 52.381 5.98 0.00 0.00 4.35
779 782 1.270358 GGATCCGACATGACTAAGGCC 60.270 57.143 0.00 0.00 0.00 5.19
783 786 0.999406 CGACATGACTAAGGCCGTTG 59.001 55.000 0.00 0.00 0.00 4.10
898 928 2.413837 GCCTTTAAACGTGAGAGCAGA 58.586 47.619 0.00 0.00 0.00 4.26
900 930 2.408704 CCTTTAAACGTGAGAGCAGACG 59.591 50.000 0.00 0.00 41.41 4.18
916 946 2.571548 ACGGAGTCGGTAATTCGGT 58.428 52.632 0.75 0.00 29.74 4.69
917 947 1.750193 ACGGAGTCGGTAATTCGGTA 58.250 50.000 0.75 0.00 29.74 4.02
918 948 2.301346 ACGGAGTCGGTAATTCGGTAT 58.699 47.619 0.75 0.00 29.74 2.73
919 949 2.291741 ACGGAGTCGGTAATTCGGTATC 59.708 50.000 0.75 0.00 29.74 2.24
920 950 2.663879 CGGAGTCGGTAATTCGGTATCG 60.664 54.545 0.00 0.00 37.82 2.92
921 951 2.351157 GGAGTCGGTAATTCGGTATCGG 60.351 54.545 0.00 0.00 36.95 4.18
922 952 1.000938 AGTCGGTAATTCGGTATCGGC 60.001 52.381 0.00 0.00 32.31 5.54
923 953 1.000938 GTCGGTAATTCGGTATCGGCT 60.001 52.381 0.00 0.00 36.95 5.52
924 954 2.226437 GTCGGTAATTCGGTATCGGCTA 59.774 50.000 0.00 0.00 36.95 3.93
927 957 3.119743 CGGTAATTCGGTATCGGCTATCA 60.120 47.826 0.00 0.00 36.95 2.15
928 958 4.421948 GGTAATTCGGTATCGGCTATCAG 58.578 47.826 0.00 0.00 36.95 2.90
929 959 4.082354 GGTAATTCGGTATCGGCTATCAGT 60.082 45.833 0.00 0.00 36.95 3.41
931 961 5.916661 AATTCGGTATCGGCTATCAGTAT 57.083 39.130 0.00 0.00 36.95 2.12
946 1391 2.094390 TCAGTATCACCCGACGGAAAAG 60.094 50.000 17.49 0.00 0.00 2.27
1545 2002 3.717294 GTGGAGGACCGTGGCCAT 61.717 66.667 9.72 0.00 39.42 4.40
1626 2083 2.515071 GCTGCCCGAGATGATCCCT 61.515 63.158 0.00 0.00 0.00 4.20
1950 2407 2.034687 ATTGGTCGGCTGCTGCTT 59.965 55.556 15.64 0.00 39.59 3.91
1953 2410 3.426568 GGTCGGCTGCTGCTTGTC 61.427 66.667 15.64 6.34 39.59 3.18
2166 2625 5.012561 TGCCATTTTTGTAGCCTAACCATTT 59.987 36.000 0.00 0.00 0.00 2.32
2189 2648 5.664294 ATCAGATGAGCTATCCTGATGAC 57.336 43.478 18.00 0.00 34.87 3.06
2200 2659 6.940298 AGCTATCCTGATGACTCTTAGTAGTC 59.060 42.308 0.00 0.00 45.10 2.59
2201 2660 6.940298 GCTATCCTGATGACTCTTAGTAGTCT 59.060 42.308 5.68 0.00 45.12 3.24
2202 2661 7.447238 GCTATCCTGATGACTCTTAGTAGTCTT 59.553 40.741 5.68 0.00 45.12 3.01
2203 2662 9.349713 CTATCCTGATGACTCTTAGTAGTCTTT 57.650 37.037 5.68 0.00 45.12 2.52
2204 2663 8.602472 ATCCTGATGACTCTTAGTAGTCTTTT 57.398 34.615 5.68 0.00 45.12 2.27
2205 2664 8.423906 TCCTGATGACTCTTAGTAGTCTTTTT 57.576 34.615 5.68 0.00 45.12 1.94
2408 2875 2.618241 TCCGAATGTATGCCTTTGATGC 59.382 45.455 0.00 0.00 0.00 3.91
2560 3027 7.138736 ACATTGTTTGTTGTATAGTGTTGAGC 58.861 34.615 0.00 0.00 33.74 4.26
2561 3028 6.935741 TTGTTTGTTGTATAGTGTTGAGCT 57.064 33.333 0.00 0.00 0.00 4.09
2562 3029 8.503196 CATTGTTTGTTGTATAGTGTTGAGCTA 58.497 33.333 0.00 0.00 0.00 3.32
2564 3031 8.028540 TGTTTGTTGTATAGTGTTGAGCTATG 57.971 34.615 0.00 0.00 32.15 2.23
2566 3033 8.504005 GTTTGTTGTATAGTGTTGAGCTATGTT 58.496 33.333 0.00 0.00 32.15 2.71
2567 3034 8.615878 TTGTTGTATAGTGTTGAGCTATGTTT 57.384 30.769 0.00 0.00 32.15 2.83
2576 3043 5.912955 GTGTTGAGCTATGTTTTTAAAGCGT 59.087 36.000 0.00 0.00 39.94 5.07
2577 3044 6.086371 GTGTTGAGCTATGTTTTTAAAGCGTC 59.914 38.462 0.00 0.00 39.94 5.19
2578 3045 5.291293 TGAGCTATGTTTTTAAAGCGTCC 57.709 39.130 0.00 0.00 39.94 4.79
2579 3046 4.155280 TGAGCTATGTTTTTAAAGCGTCCC 59.845 41.667 0.00 0.00 39.94 4.46
2582 3049 5.941647 AGCTATGTTTTTAAAGCGTCCCTAA 59.058 36.000 0.00 0.00 39.94 2.69
2583 3050 6.093633 AGCTATGTTTTTAAAGCGTCCCTAAG 59.906 38.462 0.00 0.00 39.94 2.18
2584 3051 5.638596 ATGTTTTTAAAGCGTCCCTAAGG 57.361 39.130 0.00 0.00 0.00 2.69
2585 3052 3.253921 TGTTTTTAAAGCGTCCCTAAGGC 59.746 43.478 0.00 0.00 39.09 4.35
2587 3054 0.896923 TTAAAGCGTCCCTAAGGCGA 59.103 50.000 0.00 0.00 43.57 5.54
2588 3055 0.174162 TAAAGCGTCCCTAAGGCGAC 59.826 55.000 0.00 0.00 43.57 5.19
2625 3092 4.516195 GTCGAAGCGCTCCCCCTC 62.516 72.222 12.06 2.47 0.00 4.30
2633 3100 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
2643 3110 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
2644 3111 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
2645 3112 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
2646 3113 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
2647 3114 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
2648 3115 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
2649 3116 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
2650 3117 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
2651 3118 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
2652 3119 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
2670 3137 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
2678 3145 4.770874 GTCCAAAGCGCCCGCCTA 62.771 66.667 2.29 0.00 43.17 3.93
2679 3146 4.467084 TCCAAAGCGCCCGCCTAG 62.467 66.667 2.29 0.00 43.17 3.02
2720 3187 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
2721 3188 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
2722 3189 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
2723 3190 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
2724 3191 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
2743 3210 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
2745 3212 2.417586 GCGTCGCCTTAAAAACATAGGT 59.582 45.455 5.75 0.00 0.00 3.08
2760 3227 4.770795 ACATAGGTGTTGAGGCTTATGAC 58.229 43.478 7.02 0.00 34.01 3.06
2769 3236 3.749665 GAGGCTTATGACTCTGCTGAT 57.250 47.619 4.21 0.00 44.80 2.90
2815 3282 8.513774 CCCATGCACTTAATTGCTTTTATTTTT 58.486 29.630 17.45 0.00 43.41 1.94
2914 3381 2.030274 GGTTAATCAGGTGGTTGTGCAC 60.030 50.000 10.75 10.75 0.00 4.57
3016 3483 6.895782 TCCATGAGTATTCGGTATTCCTTTT 58.104 36.000 0.00 0.00 0.00 2.27
3151 3618 1.751927 CAGGGGCTTCATGGTGAGC 60.752 63.158 7.76 7.76 0.00 4.26
3193 3660 2.636768 AAATGCAGCTTTAGGAACGC 57.363 45.000 0.00 0.00 0.00 4.84
3283 3750 4.031418 TGTGTTCTTGACTTTGTGCATG 57.969 40.909 0.00 0.00 0.00 4.06
3304 3771 7.090173 GCATGCTGGAAAACATAAGTTAGAAA 58.910 34.615 11.37 0.00 36.84 2.52
3338 3805 7.589587 CGCTGACTATAATGTTTGACACAAAAA 59.410 33.333 0.00 0.00 39.50 1.94
3350 3817 6.900568 TTGACACAAAAATTTGGCACTTAG 57.099 33.333 10.38 0.00 42.34 2.18
3373 3840 4.963276 ATTCGTTACAATGACACATGGG 57.037 40.909 0.00 0.00 0.00 4.00
3382 3849 1.297689 GACACATGGGCTCTGCAGA 59.702 57.895 17.19 17.19 0.00 4.26
3383 3850 0.107312 GACACATGGGCTCTGCAGAT 60.107 55.000 18.63 0.00 0.00 2.90
3414 3881 8.450180 CACTTTCATGGTAAATTAAAATTGGGC 58.550 33.333 0.00 0.00 0.00 5.36
3415 3882 8.160106 ACTTTCATGGTAAATTAAAATTGGGCA 58.840 29.630 0.00 0.00 0.00 5.36
3416 3883 7.913674 TTCATGGTAAATTAAAATTGGGCAC 57.086 32.000 0.00 0.00 0.00 5.01
3444 3957 1.159713 TTCTGACGCACTTGCACTGG 61.160 55.000 1.48 0.00 42.21 4.00
3477 3990 5.305644 ACCTACATTTTGGCCAAACATGTTA 59.694 36.000 36.35 27.20 35.62 2.41
3482 3995 7.647228 ACATTTTGGCCAAACATGTTAAAATC 58.353 30.769 31.66 8.27 33.02 2.17
3559 4081 6.711277 TGGCTAGAAGTTTATGATGAGTGTT 58.289 36.000 0.00 0.00 0.00 3.32
3567 4089 6.790319 AGTTTATGATGAGTGTTAAAGGGGT 58.210 36.000 0.00 0.00 0.00 4.95
3574 4116 3.323979 TGAGTGTTAAAGGGGTCTGACTC 59.676 47.826 7.85 2.89 0.00 3.36
3594 4136 6.978659 TGACTCGTGAATTGTATGAATCTACC 59.021 38.462 0.00 0.00 0.00 3.18
3687 4237 4.774660 AGATGGCTGACTCTTGAATGAT 57.225 40.909 0.00 0.00 0.00 2.45
3834 4384 8.973378 CGAAAAATGACCTTAATGCTTTTAACA 58.027 29.630 0.00 0.00 0.00 2.41
3859 4409 9.003658 CATTAACAGAACCAAGAGTTTACATCT 57.996 33.333 0.00 0.00 39.40 2.90
3982 4534 3.093717 TCGTCAAGTCTTTCCACAGTC 57.906 47.619 0.00 0.00 0.00 3.51
3984 4536 3.132289 TCGTCAAGTCTTTCCACAGTCTT 59.868 43.478 0.00 0.00 0.00 3.01
4005 4557 7.649306 AGTCTTGTTGTGTTTAATTCTCAATGC 59.351 33.333 0.00 0.00 0.00 3.56
4117 4669 5.126061 TCTCATTGAAGGCCTTTTTGCTATC 59.874 40.000 21.54 4.45 0.00 2.08
4157 4709 7.573710 TCAGGTAAATGCATAGTTGTCCTAAT 58.426 34.615 0.00 0.00 0.00 1.73
4520 5072 3.966006 TCCTGGGAGAAGATGATGAAGAG 59.034 47.826 0.00 0.00 0.00 2.85
4556 5108 0.763652 ATGCTTCTGATGGCGAGGAT 59.236 50.000 0.00 0.00 0.00 3.24
4580 5132 9.327628 GATGAAGAAGAATCAGATGATGAAGAA 57.672 33.333 0.00 0.00 42.53 2.52
4583 5135 8.721019 AAGAAGAATCAGATGATGAAGAAGAC 57.279 34.615 0.00 0.00 42.53 3.01
4795 5347 5.408299 AGTTTTGTTTGTTGAAGTTGCTTCC 59.592 36.000 6.44 0.00 39.51 3.46
4828 5380 9.015577 CGTTTTGTGTGTATTGTCTTACATTTT 57.984 29.630 0.00 0.00 34.76 1.82
4890 5444 6.800543 TCTGTACTTGAATCTCTGCTGATAC 58.199 40.000 0.00 0.00 0.00 2.24
5329 5885 1.796017 TGGCCTATATCCGGTTGACA 58.204 50.000 3.32 0.00 0.00 3.58
5344 5900 1.788229 TGACAGAGGAAGACACCACA 58.212 50.000 0.00 0.00 0.00 4.17
5362 5918 3.356290 CACATCTTCCTCCCGGATTTTT 58.644 45.455 0.73 0.00 39.58 1.94
5429 5985 3.632145 CCCTGTTATATGTCACTTTGCCC 59.368 47.826 0.00 0.00 0.00 5.36
5726 6282 2.626840 GAATCAAGCGGAGAAAGCTCT 58.373 47.619 0.00 0.00 45.31 4.09
5745 6301 2.568956 TCTGATTCAGGGTCCAGTTCTG 59.431 50.000 13.59 0.00 31.51 3.02
5750 6306 1.148027 TCAGGGTCCAGTTCTGAGTCT 59.852 52.381 1.00 0.00 33.21 3.24
5762 6318 6.222389 CAGTTCTGAGTCTGAATCAAGTTCT 58.778 40.000 14.64 3.92 37.72 3.01
5805 6361 5.416326 CGAAGGAAGAGAAGGAAGAAGTAGA 59.584 44.000 0.00 0.00 0.00 2.59
5806 6362 6.404293 CGAAGGAAGAGAAGGAAGAAGTAGAG 60.404 46.154 0.00 0.00 0.00 2.43
5832 6388 3.517500 GAGAGGAATCAGGTGGAGAAAGT 59.482 47.826 0.00 0.00 0.00 2.66
5898 6454 1.002544 GCCTAGTTGGACTCTGTTGCT 59.997 52.381 0.00 0.00 38.35 3.91
5964 6522 8.937835 TGAATCCAGGACTTATCAATCAGAATA 58.062 33.333 0.00 0.00 0.00 1.75
5972 6530 9.364989 GGACTTATCAATCAGAATATAGCTGTC 57.635 37.037 0.00 0.00 34.98 3.51
6119 6678 8.814038 ATCTGCTCAAGAATTTGTTACCTTAT 57.186 30.769 0.00 0.00 38.79 1.73
6184 6744 0.237498 GCAACGCCACTTAACTCCAC 59.763 55.000 0.00 0.00 0.00 4.02
6187 6747 2.552315 CAACGCCACTTAACTCCACAAT 59.448 45.455 0.00 0.00 0.00 2.71
6188 6748 3.688694 ACGCCACTTAACTCCACAATA 57.311 42.857 0.00 0.00 0.00 1.90
6189 6749 3.332034 ACGCCACTTAACTCCACAATAC 58.668 45.455 0.00 0.00 0.00 1.89
6190 6750 3.007614 ACGCCACTTAACTCCACAATACT 59.992 43.478 0.00 0.00 0.00 2.12
6234 6794 6.453643 AATATGAACGATGATTGTACGCTC 57.546 37.500 0.00 0.00 0.00 5.03
6244 6804 5.576447 TGATTGTACGCTCAGTCTTATCA 57.424 39.130 5.04 0.00 0.00 2.15
6260 6820 5.882557 GTCTTATCAAAGGCCTTCTCAATCA 59.117 40.000 20.79 0.00 30.69 2.57
6271 6831 7.393216 AGGCCTTCTCAATCATATCATACTTC 58.607 38.462 0.00 0.00 0.00 3.01
6344 6904 3.691609 GCCACCAGTCAAGATCTTTTAGG 59.308 47.826 4.86 8.19 0.00 2.69
6347 6907 3.589288 ACCAGTCAAGATCTTTTAGGGCT 59.411 43.478 4.86 0.00 0.00 5.19
6351 6911 5.474876 CAGTCAAGATCTTTTAGGGCTTGTT 59.525 40.000 4.86 0.00 37.71 2.83
6353 6913 4.695455 TCAAGATCTTTTAGGGCTTGTTCG 59.305 41.667 4.86 0.00 37.71 3.95
6354 6914 3.610911 AGATCTTTTAGGGCTTGTTCGG 58.389 45.455 0.00 0.00 0.00 4.30
6358 6918 2.642154 TTTAGGGCTTGTTCGGTTGA 57.358 45.000 0.00 0.00 0.00 3.18
6359 6919 2.178912 TTAGGGCTTGTTCGGTTGAG 57.821 50.000 0.00 0.00 0.00 3.02
6360 6920 0.323629 TAGGGCTTGTTCGGTTGAGG 59.676 55.000 0.00 0.00 0.00 3.86
6361 6921 1.228154 GGGCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
6362 6922 1.515521 GGGCTTGTTCGGTTGAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
6363 6923 1.515521 GGCTTGTTCGGTTGAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
6364 6924 0.534203 GCTTGTTCGGTTGAGGTGGA 60.534 55.000 0.00 0.00 0.00 4.02
6365 6925 1.882352 GCTTGTTCGGTTGAGGTGGAT 60.882 52.381 0.00 0.00 0.00 3.41
6367 6927 2.649531 TGTTCGGTTGAGGTGGATTT 57.350 45.000 0.00 0.00 0.00 2.17
6368 6928 2.226330 TGTTCGGTTGAGGTGGATTTG 58.774 47.619 0.00 0.00 0.00 2.32
6371 6931 2.778299 TCGGTTGAGGTGGATTTGAAG 58.222 47.619 0.00 0.00 0.00 3.02
6372 6932 1.812571 CGGTTGAGGTGGATTTGAAGG 59.187 52.381 0.00 0.00 0.00 3.46
6374 6934 2.171003 GTTGAGGTGGATTTGAAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
6375 6935 1.753903 TGAGGTGGATTTGAAGGGGA 58.246 50.000 0.00 0.00 0.00 4.81
6376 6936 2.287584 TGAGGTGGATTTGAAGGGGAT 58.712 47.619 0.00 0.00 0.00 3.85
6378 6938 3.026694 GAGGTGGATTTGAAGGGGATTG 58.973 50.000 0.00 0.00 0.00 2.67
6380 6940 3.026694 GGTGGATTTGAAGGGGATTGAG 58.973 50.000 0.00 0.00 0.00 3.02
6381 6941 3.026694 GTGGATTTGAAGGGGATTGAGG 58.973 50.000 0.00 0.00 0.00 3.86
6382 6942 2.024080 TGGATTTGAAGGGGATTGAGGG 60.024 50.000 0.00 0.00 0.00 4.30
6384 6944 0.709992 TTTGAAGGGGATTGAGGGGG 59.290 55.000 0.00 0.00 0.00 5.40
6385 6945 0.178816 TTGAAGGGGATTGAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
6386 6946 0.178816 TGAAGGGGATTGAGGGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
6387 6947 1.235756 GAAGGGGATTGAGGGGGAAT 58.764 55.000 0.00 0.00 0.00 3.01
6388 6948 1.575788 GAAGGGGATTGAGGGGGAATT 59.424 52.381 0.00 0.00 0.00 2.17
6390 6950 2.885119 AGGGGATTGAGGGGGAATTAA 58.115 47.619 0.00 0.00 0.00 1.40
6391 6951 3.426933 AGGGGATTGAGGGGGAATTAAT 58.573 45.455 0.00 0.00 0.00 1.40
6392 6952 3.402708 AGGGGATTGAGGGGGAATTAATC 59.597 47.826 0.00 0.00 0.00 1.75
6405 6965 2.548464 ATTAATCCCCTGCAAGCCAA 57.452 45.000 0.00 0.00 0.00 4.52
6406 6966 2.317371 TTAATCCCCTGCAAGCCAAA 57.683 45.000 0.00 0.00 0.00 3.28
6409 6969 1.197812 ATCCCCTGCAAGCCAAAATC 58.802 50.000 0.00 0.00 0.00 2.17
6410 6970 0.904394 TCCCCTGCAAGCCAAAATCC 60.904 55.000 0.00 0.00 0.00 3.01
6412 6972 0.906282 CCCTGCAAGCCAAAATCCCT 60.906 55.000 0.00 0.00 0.00 4.20
6413 6973 0.248289 CCTGCAAGCCAAAATCCCTG 59.752 55.000 0.00 0.00 0.00 4.45
6414 6974 0.390735 CTGCAAGCCAAAATCCCTGC 60.391 55.000 0.00 0.00 0.00 4.85
6415 6975 1.120184 TGCAAGCCAAAATCCCTGCA 61.120 50.000 0.00 0.00 0.00 4.41
6417 6977 1.542987 GCAAGCCAAAATCCCTGCAAA 60.543 47.619 0.00 0.00 0.00 3.68
6418 6978 2.876892 GCAAGCCAAAATCCCTGCAAAT 60.877 45.455 0.00 0.00 0.00 2.32
6420 6980 1.556451 AGCCAAAATCCCTGCAAATCC 59.444 47.619 0.00 0.00 0.00 3.01
6422 6982 1.210234 CCAAAATCCCTGCAAATCCCC 59.790 52.381 0.00 0.00 0.00 4.81
6426 6986 1.009997 ATCCCTGCAAATCCCCTCAA 58.990 50.000 0.00 0.00 0.00 3.02
6428 6988 1.362237 TCCCTGCAAATCCCCTCAAAT 59.638 47.619 0.00 0.00 0.00 2.32
6429 6989 1.758862 CCCTGCAAATCCCCTCAAATC 59.241 52.381 0.00 0.00 0.00 2.17
6430 6990 1.758862 CCTGCAAATCCCCTCAAATCC 59.241 52.381 0.00 0.00 0.00 3.01
6431 6991 2.459644 CTGCAAATCCCCTCAAATCCA 58.540 47.619 0.00 0.00 0.00 3.41
6433 6993 1.482182 GCAAATCCCCTCAAATCCACC 59.518 52.381 0.00 0.00 0.00 4.61
6434 6994 2.889756 GCAAATCCCCTCAAATCCACCT 60.890 50.000 0.00 0.00 0.00 4.00
6435 6995 2.762327 CAAATCCCCTCAAATCCACCTG 59.238 50.000 0.00 0.00 0.00 4.00
6436 6996 0.929244 ATCCCCTCAAATCCACCTGG 59.071 55.000 0.00 0.00 0.00 4.45
6445 7005 2.124768 TCCACCTGGATCCCTGCA 59.875 61.111 9.90 0.00 39.78 4.41
6446 7006 1.541118 TCCACCTGGATCCCTGCAA 60.541 57.895 9.90 0.00 39.78 4.08
6447 7007 1.139498 TCCACCTGGATCCCTGCAAA 61.139 55.000 9.90 0.00 39.78 3.68
6448 7008 0.032813 CCACCTGGATCCCTGCAAAT 60.033 55.000 9.90 0.00 37.39 2.32
6449 7009 1.396653 CACCTGGATCCCTGCAAATC 58.603 55.000 9.90 0.00 0.00 2.17
6450 7010 0.259938 ACCTGGATCCCTGCAAATCC 59.740 55.000 9.90 13.14 41.60 3.01
6451 7011 0.468771 CCTGGATCCCTGCAAATCCC 60.469 60.000 9.90 3.24 40.70 3.85
6452 7012 0.468771 CTGGATCCCTGCAAATCCCC 60.469 60.000 9.90 4.16 40.70 4.81
6453 7013 0.925720 TGGATCCCTGCAAATCCCCT 60.926 55.000 9.90 0.00 40.70 4.79
6454 7014 0.178978 GGATCCCTGCAAATCCCCTC 60.179 60.000 0.00 0.00 36.26 4.30
6455 7015 0.552848 GATCCCTGCAAATCCCCTCA 59.447 55.000 0.00 0.00 0.00 3.86
6456 7016 1.009997 ATCCCTGCAAATCCCCTCAA 58.990 50.000 0.00 0.00 0.00 3.02
6457 7017 0.783206 TCCCTGCAAATCCCCTCAAA 59.217 50.000 0.00 0.00 0.00 2.69
6459 7019 1.758862 CCCTGCAAATCCCCTCAAATC 59.241 52.381 0.00 0.00 0.00 2.17
6460 7020 1.758862 CCTGCAAATCCCCTCAAATCC 59.241 52.381 0.00 0.00 0.00 3.01
6461 7021 2.459644 CTGCAAATCCCCTCAAATCCA 58.540 47.619 0.00 0.00 0.00 3.41
6462 7022 2.167075 CTGCAAATCCCCTCAAATCCAC 59.833 50.000 0.00 0.00 0.00 4.02
6463 7023 1.482182 GCAAATCCCCTCAAATCCACC 59.518 52.381 0.00 0.00 0.00 4.61
6464 7024 2.889756 GCAAATCCCCTCAAATCCACCT 60.890 50.000 0.00 0.00 0.00 4.00
6465 7025 2.762327 CAAATCCCCTCAAATCCACCTG 59.238 50.000 0.00 0.00 0.00 4.00
6466 7026 0.929244 ATCCCCTCAAATCCACCTGG 59.071 55.000 0.00 0.00 0.00 4.45
6467 7027 1.214305 TCCCCTCAAATCCACCTGGG 61.214 60.000 0.00 0.00 35.41 4.45
6468 7028 1.307647 CCCTCAAATCCACCTGGGG 59.692 63.158 0.00 0.00 37.22 4.96
6469 7029 1.509548 CCCTCAAATCCACCTGGGGT 61.510 60.000 0.00 0.00 37.22 4.95
6471 7031 1.549203 CTCAAATCCACCTGGGGTTG 58.451 55.000 0.00 0.00 39.84 3.77
6472 7032 0.114168 TCAAATCCACCTGGGGTTGG 59.886 55.000 0.00 0.00 39.84 3.77
6474 7034 1.077298 AAATCCACCTGGGGTTGGGA 61.077 55.000 0.00 0.00 39.84 4.37
6475 7035 0.855400 AATCCACCTGGGGTTGGGAT 60.855 55.000 0.00 3.60 39.05 3.85
6476 7036 0.855400 ATCCACCTGGGGTTGGGATT 60.855 55.000 0.00 0.00 35.72 3.01
6477 7037 0.178828 TCCACCTGGGGTTGGGATTA 60.179 55.000 0.00 0.00 37.22 1.75
6478 7038 0.707616 CCACCTGGGGTTGGGATTAA 59.292 55.000 0.00 0.00 31.02 1.40
6479 7039 1.618616 CCACCTGGGGTTGGGATTAAC 60.619 57.143 0.00 0.00 31.02 2.01
6489 7049 3.926821 TTGGGATTAACCGAACAAAGC 57.073 42.857 0.00 0.00 40.11 3.51
6490 7050 2.164338 TGGGATTAACCGAACAAAGCC 58.836 47.619 0.00 0.00 40.11 4.35
6509 7225 2.027469 GCCTTACCGGGTTAGGGATATG 60.027 54.545 28.25 7.30 33.51 1.78
6536 7252 7.675161 TGGAGGATCATCAAATACTAGAACA 57.325 36.000 9.94 0.00 36.25 3.18
6550 7549 2.348411 AGAACAACCTCCACCACTTG 57.652 50.000 0.00 0.00 0.00 3.16
6551 7550 1.564348 AGAACAACCTCCACCACTTGT 59.436 47.619 0.00 0.00 0.00 3.16
6612 7612 5.178797 ACTTGCTCACTAAAATGCTCGTAT 58.821 37.500 0.00 0.00 0.00 3.06
6630 7630 2.474410 ATCAACGAAAGACCAGGACC 57.526 50.000 0.00 0.00 0.00 4.46
6635 7659 0.032952 CGAAAGACCAGGACCGAACA 59.967 55.000 0.00 0.00 0.00 3.18
6636 7660 1.509703 GAAAGACCAGGACCGAACAC 58.490 55.000 0.00 0.00 0.00 3.32
6668 7692 5.004922 AGAGCTCAAGTATCTAAGCACAC 57.995 43.478 17.77 0.00 37.22 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.268850 ACAAATCCATAGTTGATTAGTGTCAC 57.731 34.615 0.00 0.00 34.79 3.67
91 92 7.225931 ACAAATGTTCACAGTAAACGTGTCTAT 59.774 33.333 0.00 0.00 35.79 1.98
153 156 7.665974 GGGAATCCCGATTCTACTAATCAAATT 59.334 37.037 15.22 0.00 44.90 1.82
157 160 5.740290 GGGAATCCCGATTCTACTAATCA 57.260 43.478 15.22 0.00 44.90 2.57
203 206 5.888161 GGAACAAATGACATACCCAGAAGAT 59.112 40.000 0.00 0.00 0.00 2.40
254 257 5.221224 GGTCAATGTGAACACAATCCTGAAA 60.221 40.000 11.60 0.00 45.41 2.69
257 260 3.822735 AGGTCAATGTGAACACAATCCTG 59.177 43.478 11.60 7.34 45.41 3.86
303 306 3.080300 ACTTCTCGTGAGATCAGGTCT 57.920 47.619 0.00 0.00 40.84 3.85
316 319 9.716507 TTCACTTCAATCTTTAAAAACTTCTCG 57.283 29.630 0.00 0.00 0.00 4.04
326 329 7.765695 ATGCCTTCTTCACTTCAATCTTTAA 57.234 32.000 0.00 0.00 0.00 1.52
365 368 5.646577 ATATTAGCGTCCATGACCTAGAC 57.353 43.478 0.00 0.00 0.00 2.59
407 410 2.816411 TCGTTAACTCAGATCACCCCT 58.184 47.619 3.71 0.00 0.00 4.79
413 416 4.922719 AGGAACGATCGTTAACTCAGATC 58.077 43.478 31.79 16.63 38.60 2.75
435 438 5.237561 CGAATGAATCCGTTCTCTCTCTAGA 59.762 44.000 0.00 0.00 36.42 2.43
441 444 2.537625 CAGCGAATGAATCCGTTCTCTC 59.462 50.000 0.00 0.00 32.67 3.20
472 475 2.640826 TCTAAAGTGATCGTTGGGGGTT 59.359 45.455 0.00 0.00 0.00 4.11
482 485 7.750229 TCCATATGGCAATTCTAAAGTGATC 57.250 36.000 17.58 0.00 34.44 2.92
484 487 6.038161 CGTTCCATATGGCAATTCTAAAGTGA 59.962 38.462 17.58 0.00 34.44 3.41
505 508 8.370182 TGGTAATTCCCTATAAGTTATCCGTTC 58.630 37.037 0.00 0.00 34.77 3.95
528 531 8.366359 AGGCAATTCTTATTTTAGAACATGGT 57.634 30.769 0.00 0.00 37.00 3.55
541 544 6.820152 GGCAATTTCTGAAAGGCAATTCTTAT 59.180 34.615 22.70 0.00 28.59 1.73
543 546 4.999311 GGCAATTTCTGAAAGGCAATTCTT 59.001 37.500 22.70 4.38 28.59 2.52
545 548 4.317488 TGGCAATTTCTGAAAGGCAATTC 58.683 39.130 22.70 11.51 28.59 2.17
580 583 3.275617 TTAATGTAGCATGGCGGTTCT 57.724 42.857 0.00 0.00 0.00 3.01
589 592 7.716799 TCACCTTTTTGGATTAATGTAGCAT 57.283 32.000 0.00 0.00 39.71 3.79
601 604 5.526846 GCATGACAATTTTCACCTTTTTGGA 59.473 36.000 0.00 0.00 39.71 3.53
639 642 4.956075 AGTGAACATTTTCAGGGTGAAAGT 59.044 37.500 0.00 0.00 45.77 2.66
640 643 5.067674 TGAGTGAACATTTTCAGGGTGAAAG 59.932 40.000 0.00 0.00 45.77 2.62
651 654 8.405531 CCGGATAACAATATGAGTGAACATTTT 58.594 33.333 0.00 0.00 0.00 1.82
653 656 7.279615 TCCGGATAACAATATGAGTGAACATT 58.720 34.615 0.00 0.00 0.00 2.71
685 688 7.467557 AACTACGAAGTTCACGACAAAAATA 57.532 32.000 3.32 0.00 42.42 1.40
712 715 1.001633 GCTTCCACGTACCCTTCTGAA 59.998 52.381 0.00 0.00 0.00 3.02
740 743 7.884877 TCGGATCCTACGGACTAATTCTAATAA 59.115 37.037 10.75 0.00 32.98 1.40
741 744 7.335422 GTCGGATCCTACGGACTAATTCTAATA 59.665 40.741 10.75 0.00 37.23 0.98
742 745 6.150809 GTCGGATCCTACGGACTAATTCTAAT 59.849 42.308 10.75 0.00 37.23 1.73
751 754 1.133884 TCATGTCGGATCCTACGGACT 60.134 52.381 10.75 0.00 39.62 3.85
754 757 1.319541 AGTCATGTCGGATCCTACGG 58.680 55.000 10.75 5.90 0.00 4.02
757 760 2.891580 GCCTTAGTCATGTCGGATCCTA 59.108 50.000 10.75 0.00 0.00 2.94
759 762 1.270358 GGCCTTAGTCATGTCGGATCC 60.270 57.143 0.00 0.00 0.00 3.36
778 781 1.083489 TAAGCAATTCGAGCCAACGG 58.917 50.000 0.00 0.00 0.00 4.44
779 782 2.892373 TTAAGCAATTCGAGCCAACG 57.108 45.000 0.00 0.00 0.00 4.10
783 786 4.800471 CCAGATTTTTAAGCAATTCGAGCC 59.200 41.667 0.00 0.00 0.00 4.70
785 788 6.381801 ACACCAGATTTTTAAGCAATTCGAG 58.618 36.000 0.00 0.00 0.00 4.04
855 858 7.612633 AGGCCTATTCGGTTTACAGAATTTTTA 59.387 33.333 1.29 0.00 40.36 1.52
860 863 4.772886 AGGCCTATTCGGTTTACAGAAT 57.227 40.909 1.29 11.84 42.06 2.40
865 868 5.122239 ACGTTTAAAGGCCTATTCGGTTTAC 59.878 40.000 5.16 0.00 34.25 2.01
898 928 1.750193 TACCGAATTACCGACTCCGT 58.250 50.000 0.00 0.00 0.00 4.69
900 930 2.351157 CCGATACCGAATTACCGACTCC 60.351 54.545 0.00 0.00 38.22 3.85
908 938 6.600427 TGATACTGATAGCCGATACCGAATTA 59.400 38.462 0.00 0.00 38.22 1.40
909 939 5.417894 TGATACTGATAGCCGATACCGAATT 59.582 40.000 0.00 0.00 38.22 2.17
911 941 4.155462 GTGATACTGATAGCCGATACCGAA 59.845 45.833 0.00 0.00 38.22 4.30
912 942 3.688185 GTGATACTGATAGCCGATACCGA 59.312 47.826 0.00 0.00 38.22 4.69
919 949 3.794690 CGGGTGATACTGATAGCCG 57.205 57.895 0.00 0.00 46.91 5.52
920 950 1.068472 CGTCGGGTGATACTGATAGCC 60.068 57.143 0.00 0.00 0.00 3.93
921 951 1.068472 CCGTCGGGTGATACTGATAGC 60.068 57.143 2.34 0.00 0.00 2.97
922 952 2.501261 TCCGTCGGGTGATACTGATAG 58.499 52.381 12.29 0.00 33.83 2.08
923 953 2.643995 TCCGTCGGGTGATACTGATA 57.356 50.000 12.29 0.00 33.83 2.15
924 954 1.771565 TTCCGTCGGGTGATACTGAT 58.228 50.000 12.29 0.00 33.83 2.90
927 957 2.173519 TCTTTTCCGTCGGGTGATACT 58.826 47.619 12.29 0.00 33.83 2.12
928 958 2.660189 TCTTTTCCGTCGGGTGATAC 57.340 50.000 12.29 0.00 33.83 2.24
929 959 3.681593 TTTCTTTTCCGTCGGGTGATA 57.318 42.857 12.29 0.00 33.83 2.15
931 961 1.941975 GTTTTCTTTTCCGTCGGGTGA 59.058 47.619 12.29 2.03 33.83 4.02
946 1391 2.273179 GGAGCGGGGTTGGGTTTTC 61.273 63.158 0.00 0.00 0.00 2.29
1272 1717 3.551915 GAAACCCTAGCGCGCGAC 61.552 66.667 37.18 24.64 0.00 5.19
1330 1775 4.493747 CTCGTCGTCGGAAGCCCC 62.494 72.222 1.55 0.00 37.69 5.80
1374 1819 2.762459 TCGTCGGAATCCCTGGGG 60.762 66.667 14.00 2.42 0.00 4.96
1529 1986 3.716195 CATGGCCACGGTCCTCCA 61.716 66.667 8.16 0.00 0.00 3.86
1560 2017 1.687493 CTCCTTCCTCTCGGGGCTT 60.687 63.158 0.00 0.00 35.33 4.35
1614 2071 2.341543 CGGCCAGGGATCATCTCG 59.658 66.667 2.24 0.00 0.00 4.04
1950 2407 0.950555 GCTGAAGCATGACACGGACA 60.951 55.000 0.00 0.00 41.59 4.02
1953 2410 0.671472 TGAGCTGAAGCATGACACGG 60.671 55.000 4.90 0.00 45.16 4.94
2166 2625 6.492274 AGTCATCAGGATAGCTCATCTGATA 58.508 40.000 18.85 9.72 33.46 2.15
2204 2663 7.990886 ACTACTAAGAATCATATCCCGCAAAAA 59.009 33.333 0.00 0.00 0.00 1.94
2205 2664 7.506114 ACTACTAAGAATCATATCCCGCAAAA 58.494 34.615 0.00 0.00 0.00 2.44
2206 2665 7.015292 AGACTACTAAGAATCATATCCCGCAAA 59.985 37.037 0.00 0.00 0.00 3.68
2207 2666 6.493802 AGACTACTAAGAATCATATCCCGCAA 59.506 38.462 0.00 0.00 0.00 4.85
2208 2667 6.010850 AGACTACTAAGAATCATATCCCGCA 58.989 40.000 0.00 0.00 0.00 5.69
2209 2668 6.071840 ACAGACTACTAAGAATCATATCCCGC 60.072 42.308 0.00 0.00 0.00 6.13
2210 2669 7.455641 ACAGACTACTAAGAATCATATCCCG 57.544 40.000 0.00 0.00 0.00 5.14
2225 2684 8.621286 CCAACATTGTTCTTTTTACAGACTACT 58.379 33.333 0.00 0.00 0.00 2.57
2226 2685 8.403236 ACCAACATTGTTCTTTTTACAGACTAC 58.597 33.333 0.00 0.00 0.00 2.73
2227 2686 8.514330 ACCAACATTGTTCTTTTTACAGACTA 57.486 30.769 0.00 0.00 0.00 2.59
2327 2787 2.813754 TGCAGAGCACAAGTTTACCATC 59.186 45.455 0.00 0.00 31.71 3.51
2549 3016 7.962918 CGCTTTAAAAACATAGCTCAACACTAT 59.037 33.333 0.00 0.00 0.00 2.12
2553 3020 6.067263 ACGCTTTAAAAACATAGCTCAACA 57.933 33.333 0.00 0.00 0.00 3.33
2558 3025 4.332828 AGGGACGCTTTAAAAACATAGCT 58.667 39.130 0.00 0.00 0.00 3.32
2560 3027 6.677187 GCCTTAGGGACGCTTTAAAAACATAG 60.677 42.308 0.00 0.00 33.58 2.23
2561 3028 5.124297 GCCTTAGGGACGCTTTAAAAACATA 59.876 40.000 0.00 0.00 33.58 2.29
2562 3029 4.082408 GCCTTAGGGACGCTTTAAAAACAT 60.082 41.667 0.00 0.00 33.58 2.71
2564 3031 3.668757 CGCCTTAGGGACGCTTTAAAAAC 60.669 47.826 0.00 0.00 33.58 2.43
2566 3033 2.078392 CGCCTTAGGGACGCTTTAAAA 58.922 47.619 0.00 0.00 33.58 1.52
2567 3034 1.275856 TCGCCTTAGGGACGCTTTAAA 59.724 47.619 0.00 0.00 34.09 1.52
2570 3037 1.079336 GTCGCCTTAGGGACGCTTT 60.079 57.895 0.00 0.00 44.82 3.51
2571 3038 2.577593 GTCGCCTTAGGGACGCTT 59.422 61.111 0.00 0.00 44.82 4.68
2608 3075 4.516195 GAGGGGGAGCGCTTCGAC 62.516 72.222 13.26 5.82 0.00 4.20
2616 3083 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
2617 3084 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
2624 3091 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
2625 3092 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
2626 3093 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
2627 3094 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
2628 3095 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
2629 3096 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
2630 3097 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
2631 3098 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
2632 3099 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
2633 3100 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
2634 3101 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
2635 3102 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
2653 3120 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
2661 3128 4.770874 TAGGCGGGCGCTTTGGAC 62.771 66.667 7.64 0.00 41.60 4.02
2662 3129 4.467084 CTAGGCGGGCGCTTTGGA 62.467 66.667 7.64 0.00 41.60 3.53
2707 3174 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
2708 3175 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
2709 3176 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
2710 3177 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
2711 3178 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
2712 3179 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
2724 3191 2.417586 ACCTATGTTTTTAAGGCGACGC 59.582 45.455 12.43 12.43 33.42 5.19
2725 3192 3.434299 ACACCTATGTTTTTAAGGCGACG 59.566 43.478 0.00 0.00 34.46 5.12
2738 3205 4.471386 AGTCATAAGCCTCAACACCTATGT 59.529 41.667 0.00 0.00 42.46 2.29
2739 3206 5.028549 AGTCATAAGCCTCAACACCTATG 57.971 43.478 0.00 0.00 0.00 2.23
2740 3207 4.965532 AGAGTCATAAGCCTCAACACCTAT 59.034 41.667 0.00 0.00 0.00 2.57
2741 3208 4.160439 CAGAGTCATAAGCCTCAACACCTA 59.840 45.833 0.00 0.00 0.00 3.08
2742 3209 3.055530 CAGAGTCATAAGCCTCAACACCT 60.056 47.826 0.00 0.00 0.00 4.00
2743 3210 3.265791 CAGAGTCATAAGCCTCAACACC 58.734 50.000 0.00 0.00 0.00 4.16
2745 3212 2.568956 AGCAGAGTCATAAGCCTCAACA 59.431 45.455 0.00 0.00 0.00 3.33
2750 3217 5.822132 AATATCAGCAGAGTCATAAGCCT 57.178 39.130 0.00 0.00 0.00 4.58
2752 3219 7.492020 CCAGATAATATCAGCAGAGTCATAAGC 59.508 40.741 2.84 0.00 0.00 3.09
2760 3227 6.990798 TCTTCACCAGATAATATCAGCAGAG 58.009 40.000 2.84 0.00 0.00 3.35
2769 3236 7.665559 GCATGGGTAATTCTTCACCAGATAATA 59.334 37.037 0.00 0.00 36.48 0.98
2831 3298 2.485426 GCAATCAACAAGAGCTGCAGTA 59.515 45.455 16.64 0.00 38.35 2.74
3060 3527 3.306849 CCACCTGCCAGATGAGAGATATG 60.307 52.174 0.00 0.00 0.00 1.78
3193 3660 4.261741 CCAGAACAACCAAATCCAGAACAG 60.262 45.833 0.00 0.00 0.00 3.16
3227 3694 5.186198 AGGTGACAGGCAAATATAGTCAAC 58.814 41.667 0.00 0.00 44.90 3.18
3279 3746 6.194796 TCTAACTTATGTTTTCCAGCATGC 57.805 37.500 10.51 10.51 37.59 4.06
3304 3771 7.931407 TCAAACATTATAGTCAGCGGATTATGT 59.069 33.333 11.26 2.09 29.79 2.29
3312 3779 5.778161 TGTGTCAAACATTATAGTCAGCG 57.222 39.130 0.00 0.00 32.36 5.18
3338 3805 6.811253 TGTAACGAATTCTAAGTGCCAAAT 57.189 33.333 3.52 0.00 0.00 2.32
3340 3807 6.428465 TCATTGTAACGAATTCTAAGTGCCAA 59.572 34.615 3.52 2.38 0.00 4.52
3350 3817 5.331902 CCCATGTGTCATTGTAACGAATTC 58.668 41.667 0.00 0.00 0.00 2.17
3373 3840 6.092396 CCATGAAAGTGATATATCTGCAGAGC 59.908 42.308 22.96 9.14 0.00 4.09
3411 3878 3.821841 CGTCAGAAACAATTAAGTGCCC 58.178 45.455 2.17 0.00 0.00 5.36
3412 3879 3.234386 GCGTCAGAAACAATTAAGTGCC 58.766 45.455 2.17 0.00 0.00 5.01
3414 3881 5.095691 AGTGCGTCAGAAACAATTAAGTG 57.904 39.130 0.45 0.45 0.00 3.16
3415 3882 5.510671 CAAGTGCGTCAGAAACAATTAAGT 58.489 37.500 0.00 0.00 0.00 2.24
3416 3883 4.379793 GCAAGTGCGTCAGAAACAATTAAG 59.620 41.667 0.00 0.00 0.00 1.85
3526 4047 7.109501 TCATAAACTTCTAGCCATGCAACTTA 58.890 34.615 0.00 0.00 0.00 2.24
3528 4049 5.500234 TCATAAACTTCTAGCCATGCAACT 58.500 37.500 0.00 0.00 0.00 3.16
3529 4050 5.818136 TCATAAACTTCTAGCCATGCAAC 57.182 39.130 0.00 0.00 0.00 4.17
3559 4081 2.297698 TCACGAGTCAGACCCCTTTA 57.702 50.000 0.00 0.00 0.00 1.85
3567 4089 6.867550 AGATTCATACAATTCACGAGTCAGA 58.132 36.000 0.00 0.00 0.00 3.27
3574 4116 8.642908 TTAGTGGTAGATTCATACAATTCACG 57.357 34.615 0.00 0.00 0.00 4.35
3606 4154 5.677319 TGCCTCTACAACTAACAATAGCT 57.323 39.130 0.00 0.00 31.96 3.32
3687 4237 3.066291 TGCTTGCCGGATCTTAAGAAA 57.934 42.857 5.05 0.00 0.00 2.52
3719 4269 5.014858 AGGACGTAGAATTAGTTGACCTGA 58.985 41.667 0.00 0.00 0.00 3.86
3834 4384 9.574516 AAGATGTAAACTCTTGGTTCTGTTAAT 57.425 29.630 0.00 0.00 37.12 1.40
3855 4405 6.254589 GGACAGACGATTTAGTTCAGAAGATG 59.745 42.308 0.00 0.00 0.00 2.90
3859 4409 5.462530 TGGACAGACGATTTAGTTCAGAA 57.537 39.130 0.00 0.00 0.00 3.02
3944 4495 4.878971 TGACGAAAATCAACAAGGAGAACA 59.121 37.500 0.00 0.00 0.00 3.18
3945 4496 5.418310 TGACGAAAATCAACAAGGAGAAC 57.582 39.130 0.00 0.00 0.00 3.01
3946 4497 5.588648 ACTTGACGAAAATCAACAAGGAGAA 59.411 36.000 0.00 0.00 41.15 2.87
3962 4513 2.693591 AGACTGTGGAAAGACTTGACGA 59.306 45.455 0.00 0.00 0.00 4.20
3982 4534 7.697352 TGCATTGAGAATTAAACACAACAAG 57.303 32.000 0.00 0.00 0.00 3.16
3984 4536 8.659925 AAATGCATTGAGAATTAAACACAACA 57.340 26.923 13.82 0.00 0.00 3.33
4016 4568 7.500141 TCAAACATAGCTGCATAGATCAAGTA 58.500 34.615 1.02 0.00 0.00 2.24
4117 4669 5.467035 TTACCTGAAATTTGGCCTTTCTG 57.533 39.130 14.90 13.89 34.43 3.02
4357 4909 8.100164 TCCACTCATGTGATGTAAATAACAGAA 58.900 33.333 0.94 0.00 46.55 3.02
4368 4920 7.707624 ACAAATTTATCCACTCATGTGATGT 57.292 32.000 0.94 0.00 46.55 3.06
4520 5072 2.172293 AGCATCATCAGACCCTTCTTCC 59.828 50.000 0.00 0.00 0.00 3.46
4556 5108 8.537858 TCTTCTTCATCATCTGATTCTTCTTCA 58.462 33.333 0.00 0.00 32.72 3.02
4580 5132 2.136298 TCTCCATCTGCTCTTCGTCT 57.864 50.000 0.00 0.00 0.00 4.18
4583 5135 4.518590 TCTCTTATCTCCATCTGCTCTTCG 59.481 45.833 0.00 0.00 0.00 3.79
4795 5347 6.855914 AGACAATACACACAAAACGCAAATAG 59.144 34.615 0.00 0.00 0.00 1.73
4867 5421 5.685068 CGTATCAGCAGAGATTCAAGTACAG 59.315 44.000 0.00 0.00 0.00 2.74
4961 5517 4.082245 CGGAAAAACAAAGTCTGGCCATAT 60.082 41.667 5.51 0.00 0.00 1.78
5131 5687 4.689345 CGCTGCCCTAATAAACCATAGTAC 59.311 45.833 0.00 0.00 0.00 2.73
5329 5885 3.971245 GAAGATGTGGTGTCTTCCTCT 57.029 47.619 4.89 0.00 43.59 3.69
5429 5985 4.318332 TCAGTTGTCTGCTATGGTGAAAG 58.682 43.478 0.00 0.00 41.10 2.62
5726 6282 2.568956 CTCAGAACTGGACCCTGAATCA 59.431 50.000 1.93 0.00 36.61 2.57
5745 6301 6.629128 TCTCATCAGAACTTGATTCAGACTC 58.371 40.000 0.00 0.00 44.14 3.36
5750 6306 4.082026 TCGCTCTCATCAGAACTTGATTCA 60.082 41.667 0.00 0.00 44.14 2.57
5762 6318 1.995484 CGCTTTTTCTCGCTCTCATCA 59.005 47.619 0.00 0.00 0.00 3.07
5805 6361 1.343884 CCACCTGATTCCTCTCCCTCT 60.344 57.143 0.00 0.00 0.00 3.69
5806 6362 1.127343 CCACCTGATTCCTCTCCCTC 58.873 60.000 0.00 0.00 0.00 4.30
5853 6409 4.157289 GCTGATCCAAACACAACTGATGAT 59.843 41.667 0.00 0.00 0.00 2.45
5856 6412 3.504906 CAGCTGATCCAAACACAACTGAT 59.495 43.478 8.42 0.00 31.90 2.90
5898 6454 5.456548 AATTCTGATTGACACATGCACAA 57.543 34.783 0.00 0.00 0.00 3.33
5964 6522 1.001974 TCAACAAGCACCGACAGCTAT 59.998 47.619 0.00 0.00 42.53 2.97
5972 6530 0.523072 CCTGGATTCAACAAGCACCG 59.477 55.000 0.00 0.00 0.00 4.94
6037 6596 8.476925 GCTGTCTAAAATTTACCAAGAAAAACG 58.523 33.333 0.00 0.00 0.00 3.60
6119 6678 2.147958 GCAAACCAACATACAGACCGA 58.852 47.619 0.00 0.00 0.00 4.69
6184 6744 8.506168 TTATCCTTAGGCACAAAGAAGTATTG 57.494 34.615 0.00 0.00 0.00 1.90
6225 6785 5.168569 CCTTTGATAAGACTGAGCGTACAA 58.831 41.667 0.00 0.00 32.92 2.41
6234 6794 4.836825 TGAGAAGGCCTTTGATAAGACTG 58.163 43.478 21.54 0.00 32.92 3.51
6244 6804 7.753630 AGTATGATATGATTGAGAAGGCCTTT 58.246 34.615 21.54 9.74 0.00 3.11
6344 6904 1.515521 CCACCTCAACCGAACAAGCC 61.516 60.000 0.00 0.00 0.00 4.35
6347 6907 2.621055 CAAATCCACCTCAACCGAACAA 59.379 45.455 0.00 0.00 0.00 2.83
6351 6911 2.552155 CCTTCAAATCCACCTCAACCGA 60.552 50.000 0.00 0.00 0.00 4.69
6353 6913 2.171003 CCCTTCAAATCCACCTCAACC 58.829 52.381 0.00 0.00 0.00 3.77
6354 6914 2.171003 CCCCTTCAAATCCACCTCAAC 58.829 52.381 0.00 0.00 0.00 3.18
6358 6918 2.654385 TCAATCCCCTTCAAATCCACCT 59.346 45.455 0.00 0.00 0.00 4.00
6359 6919 3.026694 CTCAATCCCCTTCAAATCCACC 58.973 50.000 0.00 0.00 0.00 4.61
6360 6920 3.026694 CCTCAATCCCCTTCAAATCCAC 58.973 50.000 0.00 0.00 0.00 4.02
6361 6921 2.024080 CCCTCAATCCCCTTCAAATCCA 60.024 50.000 0.00 0.00 0.00 3.41
6362 6922 2.670939 CCCTCAATCCCCTTCAAATCC 58.329 52.381 0.00 0.00 0.00 3.01
6363 6923 2.670939 CCCCTCAATCCCCTTCAAATC 58.329 52.381 0.00 0.00 0.00 2.17
6364 6924 1.291939 CCCCCTCAATCCCCTTCAAAT 59.708 52.381 0.00 0.00 0.00 2.32
6365 6925 0.709992 CCCCCTCAATCCCCTTCAAA 59.290 55.000 0.00 0.00 0.00 2.69
6367 6927 0.178816 TTCCCCCTCAATCCCCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
6368 6928 1.235756 ATTCCCCCTCAATCCCCTTC 58.764 55.000 0.00 0.00 0.00 3.46
6371 6931 3.502303 GGATTAATTCCCCCTCAATCCCC 60.502 52.174 3.43 0.00 39.05 4.81
6372 6932 3.779444 GGATTAATTCCCCCTCAATCCC 58.221 50.000 3.43 0.00 39.05 3.85
6384 6944 2.387757 TGGCTTGCAGGGGATTAATTC 58.612 47.619 0.00 0.00 0.00 2.17
6385 6945 2.548464 TGGCTTGCAGGGGATTAATT 57.452 45.000 0.00 0.00 0.00 1.40
6386 6946 2.548464 TTGGCTTGCAGGGGATTAAT 57.452 45.000 0.00 0.00 0.00 1.40
6387 6947 2.317371 TTTGGCTTGCAGGGGATTAA 57.683 45.000 0.00 0.00 0.00 1.40
6388 6948 2.317371 TTTTGGCTTGCAGGGGATTA 57.683 45.000 0.00 0.00 0.00 1.75
6390 6950 1.197812 GATTTTGGCTTGCAGGGGAT 58.802 50.000 0.00 0.00 0.00 3.85
6391 6951 0.904394 GGATTTTGGCTTGCAGGGGA 60.904 55.000 0.00 0.00 0.00 4.81
6392 6952 1.598517 GGATTTTGGCTTGCAGGGG 59.401 57.895 0.00 0.00 0.00 4.79
6394 6954 0.248289 CAGGGATTTTGGCTTGCAGG 59.752 55.000 0.00 0.00 0.00 4.85
6395 6955 0.390735 GCAGGGATTTTGGCTTGCAG 60.391 55.000 0.00 0.00 0.00 4.41
6396 6956 1.120184 TGCAGGGATTTTGGCTTGCA 61.120 50.000 0.00 0.00 39.03 4.08
6397 6957 0.035176 TTGCAGGGATTTTGGCTTGC 59.965 50.000 0.00 0.00 0.00 4.01
6398 6958 2.547299 TTTGCAGGGATTTTGGCTTG 57.453 45.000 0.00 0.00 0.00 4.01
6399 6959 2.026915 GGATTTGCAGGGATTTTGGCTT 60.027 45.455 0.00 0.00 0.00 4.35
6400 6960 1.556451 GGATTTGCAGGGATTTTGGCT 59.444 47.619 0.00 0.00 0.00 4.75
6401 6961 1.407299 GGGATTTGCAGGGATTTTGGC 60.407 52.381 0.00 0.00 0.00 4.52
6402 6962 1.210234 GGGGATTTGCAGGGATTTTGG 59.790 52.381 0.00 0.00 0.00 3.28
6405 6965 1.362237 TGAGGGGATTTGCAGGGATTT 59.638 47.619 0.00 0.00 0.00 2.17
6406 6966 1.009997 TGAGGGGATTTGCAGGGATT 58.990 50.000 0.00 0.00 0.00 3.01
6409 6969 1.758862 GATTTGAGGGGATTTGCAGGG 59.241 52.381 0.00 0.00 0.00 4.45
6410 6970 1.758862 GGATTTGAGGGGATTTGCAGG 59.241 52.381 0.00 0.00 0.00 4.85
6412 6972 2.178580 GTGGATTTGAGGGGATTTGCA 58.821 47.619 0.00 0.00 0.00 4.08
6413 6973 1.482182 GGTGGATTTGAGGGGATTTGC 59.518 52.381 0.00 0.00 0.00 3.68
6414 6974 2.762327 CAGGTGGATTTGAGGGGATTTG 59.238 50.000 0.00 0.00 0.00 2.32
6415 6975 2.292455 CCAGGTGGATTTGAGGGGATTT 60.292 50.000 0.00 0.00 37.39 2.17
6417 6977 0.929244 CCAGGTGGATTTGAGGGGAT 59.071 55.000 0.00 0.00 37.39 3.85
6418 6978 0.178846 TCCAGGTGGATTTGAGGGGA 60.179 55.000 0.00 0.00 39.78 4.81
6429 6989 0.032813 ATTTGCAGGGATCCAGGTGG 60.033 55.000 15.23 0.00 0.00 4.61
6430 6990 1.396653 GATTTGCAGGGATCCAGGTG 58.603 55.000 15.23 8.81 0.00 4.00
6431 6991 0.259938 GGATTTGCAGGGATCCAGGT 59.740 55.000 15.23 0.00 41.21 4.00
6433 6993 0.468771 GGGGATTTGCAGGGATCCAG 60.469 60.000 15.23 6.58 42.94 3.86
6434 6994 0.925720 AGGGGATTTGCAGGGATCCA 60.926 55.000 15.23 0.00 42.94 3.41
6435 6995 0.178978 GAGGGGATTTGCAGGGATCC 60.179 60.000 1.92 1.92 40.90 3.36
6436 6996 0.552848 TGAGGGGATTTGCAGGGATC 59.447 55.000 0.00 0.00 0.00 3.36
6437 6997 1.009997 TTGAGGGGATTTGCAGGGAT 58.990 50.000 0.00 0.00 0.00 3.85
6438 6998 0.783206 TTTGAGGGGATTTGCAGGGA 59.217 50.000 0.00 0.00 0.00 4.20
6439 6999 1.758862 GATTTGAGGGGATTTGCAGGG 59.241 52.381 0.00 0.00 0.00 4.45
6440 7000 1.758862 GGATTTGAGGGGATTTGCAGG 59.241 52.381 0.00 0.00 0.00 4.85
6441 7001 2.167075 GTGGATTTGAGGGGATTTGCAG 59.833 50.000 0.00 0.00 0.00 4.41
6442 7002 2.178580 GTGGATTTGAGGGGATTTGCA 58.821 47.619 0.00 0.00 0.00 4.08
6444 7004 2.762327 CAGGTGGATTTGAGGGGATTTG 59.238 50.000 0.00 0.00 0.00 2.32
6445 7005 2.292455 CCAGGTGGATTTGAGGGGATTT 60.292 50.000 0.00 0.00 37.39 2.17
6446 7006 1.288932 CCAGGTGGATTTGAGGGGATT 59.711 52.381 0.00 0.00 37.39 3.01
6447 7007 0.929244 CCAGGTGGATTTGAGGGGAT 59.071 55.000 0.00 0.00 37.39 3.85
6448 7008 1.214305 CCCAGGTGGATTTGAGGGGA 61.214 60.000 0.00 0.00 36.14 4.81
6449 7009 1.307647 CCCAGGTGGATTTGAGGGG 59.692 63.158 0.00 0.00 37.39 4.79
6450 7010 1.307647 CCCCAGGTGGATTTGAGGG 59.692 63.158 0.00 0.00 37.39 4.30
6451 7011 0.409484 AACCCCAGGTGGATTTGAGG 59.591 55.000 0.00 0.00 35.34 3.86
6452 7012 1.549203 CAACCCCAGGTGGATTTGAG 58.451 55.000 0.00 0.00 35.34 3.02
6453 7013 0.114168 CCAACCCCAGGTGGATTTGA 59.886 55.000 0.00 0.00 35.34 2.69
6454 7014 0.904394 CCCAACCCCAGGTGGATTTG 60.904 60.000 0.00 0.43 35.34 2.32
6455 7015 1.077298 TCCCAACCCCAGGTGGATTT 61.077 55.000 0.00 0.00 35.34 2.17
6456 7016 0.855400 ATCCCAACCCCAGGTGGATT 60.855 55.000 0.00 0.00 35.72 3.01
6457 7017 0.855400 AATCCCAACCCCAGGTGGAT 60.855 55.000 0.00 0.00 39.30 3.41
6459 7019 0.707616 TTAATCCCAACCCCAGGTGG 59.292 55.000 0.00 0.00 35.34 4.61
6460 7020 1.618616 GGTTAATCCCAACCCCAGGTG 60.619 57.143 0.00 0.00 41.89 4.00
6461 7021 0.708209 GGTTAATCCCAACCCCAGGT 59.292 55.000 0.00 0.00 41.89 4.00
6462 7022 0.395173 CGGTTAATCCCAACCCCAGG 60.395 60.000 0.00 0.00 44.37 4.45
6463 7023 0.621609 TCGGTTAATCCCAACCCCAG 59.378 55.000 0.00 0.00 44.37 4.45
6464 7024 1.073931 TTCGGTTAATCCCAACCCCA 58.926 50.000 0.00 0.00 44.37 4.96
6465 7025 1.272037 TGTTCGGTTAATCCCAACCCC 60.272 52.381 0.00 0.00 44.37 4.95
6466 7026 2.203470 TGTTCGGTTAATCCCAACCC 57.797 50.000 0.00 0.00 44.37 4.11
6467 7027 3.613193 GCTTTGTTCGGTTAATCCCAACC 60.613 47.826 0.00 0.00 43.88 3.77
6468 7028 3.571571 GCTTTGTTCGGTTAATCCCAAC 58.428 45.455 0.00 0.00 0.00 3.77
6469 7029 2.559231 GGCTTTGTTCGGTTAATCCCAA 59.441 45.455 0.00 0.00 0.00 4.12
6471 7031 2.443416 AGGCTTTGTTCGGTTAATCCC 58.557 47.619 0.00 0.00 0.00 3.85
6472 7032 4.142534 GGTAAGGCTTTGTTCGGTTAATCC 60.143 45.833 4.45 0.00 0.00 3.01
6474 7034 3.437741 CGGTAAGGCTTTGTTCGGTTAAT 59.562 43.478 4.45 0.00 0.00 1.40
6475 7035 2.807392 CGGTAAGGCTTTGTTCGGTTAA 59.193 45.455 4.45 0.00 0.00 2.01
6476 7036 2.415776 CGGTAAGGCTTTGTTCGGTTA 58.584 47.619 4.45 0.00 0.00 2.85
6477 7037 1.232119 CGGTAAGGCTTTGTTCGGTT 58.768 50.000 4.45 0.00 0.00 4.44
6478 7038 0.604511 CCGGTAAGGCTTTGTTCGGT 60.605 55.000 4.45 0.00 0.00 4.69
6479 7039 1.303091 CCCGGTAAGGCTTTGTTCGG 61.303 60.000 4.45 13.25 39.21 4.30
6481 7041 1.612676 AACCCGGTAAGGCTTTGTTC 58.387 50.000 4.45 0.00 39.21 3.18
6483 7043 1.003928 CCTAACCCGGTAAGGCTTTGT 59.996 52.381 4.45 0.00 39.21 2.83
6484 7044 1.680860 CCCTAACCCGGTAAGGCTTTG 60.681 57.143 4.45 0.00 39.21 2.77
6488 7048 1.720781 TATCCCTAACCCGGTAAGGC 58.279 55.000 0.00 0.00 39.21 4.35
6489 7049 3.245441 ACATATCCCTAACCCGGTAAGG 58.755 50.000 0.00 3.65 40.63 2.69
6490 7050 5.105064 CCATACATATCCCTAACCCGGTAAG 60.105 48.000 0.00 0.00 0.00 2.34
6503 7219 9.553064 GTATTTGATGATCCTCCATACATATCC 57.447 37.037 10.26 0.00 0.00 2.59
6509 7225 9.646427 GTTCTAGTATTTGATGATCCTCCATAC 57.354 37.037 8.33 8.33 0.00 2.39
6536 7252 3.650942 TGATAGAACAAGTGGTGGAGGTT 59.349 43.478 0.00 0.00 0.00 3.50
6550 7549 8.593492 AAATTTTTGAAGGCTTGTGATAGAAC 57.407 30.769 3.46 0.00 0.00 3.01
6567 7566 7.328157 AGTTATTGGACGCGTTAAATTTTTG 57.672 32.000 15.53 0.00 0.00 2.44
6612 7612 0.032952 CGGTCCTGGTCTTTCGTTGA 59.967 55.000 0.00 0.00 0.00 3.18
6625 7625 4.100498 TCTTTGAAGTTAGTGTTCGGTCCT 59.900 41.667 0.00 0.00 0.00 3.85
6630 7630 4.745125 TGAGCTCTTTGAAGTTAGTGTTCG 59.255 41.667 16.19 0.00 0.00 3.95
6635 7659 7.902087 AGATACTTGAGCTCTTTGAAGTTAGT 58.098 34.615 18.91 8.71 31.25 2.24
6636 7660 9.862371 TTAGATACTTGAGCTCTTTGAAGTTAG 57.138 33.333 18.91 4.80 31.25 2.34
6668 7692 3.763360 TCATAATTTGGACACTGGGCTTG 59.237 43.478 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.