Multiple sequence alignment - TraesCS3A01G446100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G446100 chr3A 100.000 3241 0 0 1 3241 686750837 686747597 0.000000e+00 5986
1 TraesCS3A01G446100 chr3A 94.957 813 38 3 1 811 232619125 232619936 0.000000e+00 1271
2 TraesCS3A01G446100 chr3A 94.588 813 41 3 1 811 532892891 532893702 0.000000e+00 1254
3 TraesCS3A01G446100 chr3A 94.581 812 43 1 1 811 589724119 589723308 0.000000e+00 1254
4 TraesCS3A01G446100 chr3A 81.411 1318 201 28 968 2264 601133984 601132690 0.000000e+00 1037
5 TraesCS3A01G446100 chr3A 81.998 811 84 36 969 1751 686551640 686550864 1.640000e-177 632
6 TraesCS3A01G446100 chr3A 80.935 556 75 16 2330 2866 601132664 601132121 8.370000e-111 411
7 TraesCS3A01G446100 chr3A 84.979 233 25 5 2636 2865 686583634 686583409 9.050000e-56 228
8 TraesCS3A01G446100 chr3A 85.096 208 27 3 2663 2866 686708925 686708718 3.280000e-50 209
9 TraesCS3A01G446100 chr3B 92.816 2450 116 25 833 3241 728890908 728888478 0.000000e+00 3494
10 TraesCS3A01G446100 chr3B 83.239 1235 172 25 1034 2251 728754006 728752790 0.000000e+00 1101
11 TraesCS3A01G446100 chr3B 82.656 1280 154 43 973 2213 728585864 728584614 0.000000e+00 1072
12 TraesCS3A01G446100 chr3B 81.340 1313 173 38 982 2261 727740594 727741867 0.000000e+00 1002
13 TraesCS3A01G446100 chr3B 81.135 1251 192 25 974 2186 727786511 727787755 0.000000e+00 963
14 TraesCS3A01G446100 chr3B 80.295 1152 180 31 1136 2264 605912628 605911501 0.000000e+00 826
15 TraesCS3A01G446100 chr3B 82.345 742 118 10 1364 2097 727794133 727794869 1.640000e-177 632
16 TraesCS3A01G446100 chr3B 77.995 768 116 32 2155 2889 728503055 728502308 1.790000e-117 433
17 TraesCS3A01G446100 chr3B 81.081 555 75 16 2330 2866 605911475 605910933 1.800000e-112 416
18 TraesCS3A01G446100 chr7B 88.318 1909 174 23 986 2870 543186975 543188858 0.000000e+00 2244
19 TraesCS3A01G446100 chr3D 96.190 1181 43 2 932 2112 549468065 549466887 0.000000e+00 1930
20 TraesCS3A01G446100 chr3D 83.171 1337 186 26 931 2252 549349863 549348551 0.000000e+00 1186
21 TraesCS3A01G446100 chr3D 83.550 1228 162 24 1041 2251 549127168 549125964 0.000000e+00 1112
22 TraesCS3A01G446100 chr3D 81.943 1307 173 37 984 2261 548694334 548695606 0.000000e+00 1048
23 TraesCS3A01G446100 chr3D 81.264 1329 178 42 973 2265 548711722 548713015 0.000000e+00 1009
24 TraesCS3A01G446100 chr3D 93.241 651 33 4 2104 2752 549464203 549463562 0.000000e+00 948
25 TraesCS3A01G446100 chr3D 81.696 519 72 13 2358 2866 458884613 458884108 8.370000e-111 411
26 TraesCS3A01G446100 chr3D 81.237 485 60 20 2327 2797 548713167 548713634 2.380000e-96 363
27 TraesCS3A01G446100 chr3D 94.643 224 8 2 3021 3241 549463476 549463254 8.610000e-91 344
28 TraesCS3A01G446100 chr3D 80.541 370 55 10 2327 2689 548726966 548727325 5.330000e-68 268
29 TraesCS3A01G446100 chr3D 83.398 259 35 3 2952 3203 549348096 549347839 1.940000e-57 233
30 TraesCS3A01G446100 chr3D 92.771 83 6 0 2857 2939 549463576 549463494 1.580000e-23 121
31 TraesCS3A01G446100 chr5A 95.197 812 38 1 1 811 386299126 386299937 0.000000e+00 1282
32 TraesCS3A01G446100 chr5A 94.465 813 43 2 1 811 404100062 404100874 0.000000e+00 1251
33 TraesCS3A01G446100 chr5A 94.219 813 45 2 1 811 94668409 94667597 0.000000e+00 1240
34 TraesCS3A01G446100 chr7A 94.458 812 44 1 1 811 283568999 283569810 0.000000e+00 1249
35 TraesCS3A01G446100 chr1A 94.451 811 43 2 3 811 103244565 103245375 0.000000e+00 1247
36 TraesCS3A01G446100 chr4A 94.335 812 45 1 1 811 590543463 590542652 0.000000e+00 1243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G446100 chr3A 686747597 686750837 3240 True 5986.00 5986 100.00000 1 3241 1 chr3A.!!$R5 3240
1 TraesCS3A01G446100 chr3A 232619125 232619936 811 False 1271.00 1271 94.95700 1 811 1 chr3A.!!$F1 810
2 TraesCS3A01G446100 chr3A 532892891 532893702 811 False 1254.00 1254 94.58800 1 811 1 chr3A.!!$F2 810
3 TraesCS3A01G446100 chr3A 589723308 589724119 811 True 1254.00 1254 94.58100 1 811 1 chr3A.!!$R1 810
4 TraesCS3A01G446100 chr3A 601132121 601133984 1863 True 724.00 1037 81.17300 968 2866 2 chr3A.!!$R6 1898
5 TraesCS3A01G446100 chr3A 686550864 686551640 776 True 632.00 632 81.99800 969 1751 1 chr3A.!!$R2 782
6 TraesCS3A01G446100 chr3B 728888478 728890908 2430 True 3494.00 3494 92.81600 833 3241 1 chr3B.!!$R4 2408
7 TraesCS3A01G446100 chr3B 728752790 728754006 1216 True 1101.00 1101 83.23900 1034 2251 1 chr3B.!!$R3 1217
8 TraesCS3A01G446100 chr3B 728584614 728585864 1250 True 1072.00 1072 82.65600 973 2213 1 chr3B.!!$R2 1240
9 TraesCS3A01G446100 chr3B 727740594 727741867 1273 False 1002.00 1002 81.34000 982 2261 1 chr3B.!!$F1 1279
10 TraesCS3A01G446100 chr3B 727786511 727787755 1244 False 963.00 963 81.13500 974 2186 1 chr3B.!!$F2 1212
11 TraesCS3A01G446100 chr3B 727794133 727794869 736 False 632.00 632 82.34500 1364 2097 1 chr3B.!!$F3 733
12 TraesCS3A01G446100 chr3B 605910933 605912628 1695 True 621.00 826 80.68800 1136 2866 2 chr3B.!!$R5 1730
13 TraesCS3A01G446100 chr3B 728502308 728503055 747 True 433.00 433 77.99500 2155 2889 1 chr3B.!!$R1 734
14 TraesCS3A01G446100 chr7B 543186975 543188858 1883 False 2244.00 2244 88.31800 986 2870 1 chr7B.!!$F1 1884
15 TraesCS3A01G446100 chr3D 549125964 549127168 1204 True 1112.00 1112 83.55000 1041 2251 1 chr3D.!!$R2 1210
16 TraesCS3A01G446100 chr3D 548694334 548695606 1272 False 1048.00 1048 81.94300 984 2261 1 chr3D.!!$F1 1277
17 TraesCS3A01G446100 chr3D 549463254 549468065 4811 True 835.75 1930 94.21125 932 3241 4 chr3D.!!$R4 2309
18 TraesCS3A01G446100 chr3D 549347839 549349863 2024 True 709.50 1186 83.28450 931 3203 2 chr3D.!!$R3 2272
19 TraesCS3A01G446100 chr3D 548711722 548713634 1912 False 686.00 1009 81.25050 973 2797 2 chr3D.!!$F3 1824
20 TraesCS3A01G446100 chr3D 458884108 458884613 505 True 411.00 411 81.69600 2358 2866 1 chr3D.!!$R1 508
21 TraesCS3A01G446100 chr5A 386299126 386299937 811 False 1282.00 1282 95.19700 1 811 1 chr5A.!!$F1 810
22 TraesCS3A01G446100 chr5A 404100062 404100874 812 False 1251.00 1251 94.46500 1 811 1 chr5A.!!$F2 810
23 TraesCS3A01G446100 chr5A 94667597 94668409 812 True 1240.00 1240 94.21900 1 811 1 chr5A.!!$R1 810
24 TraesCS3A01G446100 chr7A 283568999 283569810 811 False 1249.00 1249 94.45800 1 811 1 chr7A.!!$F1 810
25 TraesCS3A01G446100 chr1A 103244565 103245375 810 False 1247.00 1247 94.45100 3 811 1 chr1A.!!$F1 808
26 TraesCS3A01G446100 chr4A 590542652 590543463 811 True 1243.00 1243 94.33500 1 811 1 chr4A.!!$R1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 841 1.488705 TACAACACAGAGGGGGCCTG 61.489 60.000 0.84 0.0 31.76 4.85 F
1092 1141 1.458588 GATTCTCCTCCGCCTCCCT 60.459 63.158 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2048 0.108138 CCCACTAAAGCGAGAGGGTG 60.108 60.0 9.63 0.00 41.22 4.61 R
2606 5552 0.508641 CACAGTTCACGCGGAAGAAG 59.491 55.0 12.47 6.56 35.82 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.523758 GCCGTGGACATTGTCTTCTT 58.476 50.000 16.02 0.00 32.47 2.52
270 274 5.909610 GCAGTTTCTATTCACACAAGTTGAC 59.090 40.000 10.54 0.00 0.00 3.18
359 363 5.970317 TCCTCACTTGTACTTATTCGTGA 57.030 39.130 0.00 0.00 0.00 4.35
418 422 4.158579 AGTGAATGTCTTCGCACTATGAGA 59.841 41.667 0.00 0.00 43.03 3.27
420 424 6.039829 AGTGAATGTCTTCGCACTATGAGATA 59.960 38.462 0.00 0.00 43.03 1.98
483 487 2.852449 TGCATATGACCTCTTCCCCTTT 59.148 45.455 6.97 0.00 0.00 3.11
484 488 3.269381 TGCATATGACCTCTTCCCCTTTT 59.731 43.478 6.97 0.00 0.00 2.27
508 512 3.132111 TCGCACCTTAATGCTGTCATAGA 59.868 43.478 0.00 0.00 43.80 1.98
545 549 5.995446 GAGAATCCCTTGGTTCTCATAGTT 58.005 41.667 10.00 0.00 46.03 2.24
548 552 4.993705 TCCCTTGGTTCTCATAGTTTGT 57.006 40.909 0.00 0.00 0.00 2.83
619 623 3.136009 TCTTGTCTGACCAGTAGACGA 57.864 47.619 5.17 0.00 45.82 4.20
633 637 5.507482 CCAGTAGACGAAAGACTTTGACAGA 60.507 44.000 4.85 0.00 37.32 3.41
666 670 5.843673 TTCAGTTTAAACTTCATGGCACA 57.156 34.783 18.25 0.00 39.56 4.57
689 693 4.226384 AGAAAAATCTGCAAGGAAGGGTT 58.774 39.130 0.00 0.00 0.00 4.11
816 820 7.263100 TCCAATGGATTCGAAGATAAACATG 57.737 36.000 3.35 0.00 35.04 3.21
817 821 6.828273 TCCAATGGATTCGAAGATAAACATGT 59.172 34.615 3.35 0.00 35.04 3.21
818 822 7.339212 TCCAATGGATTCGAAGATAAACATGTT 59.661 33.333 4.92 4.92 35.04 2.71
819 823 8.620416 CCAATGGATTCGAAGATAAACATGTTA 58.380 33.333 12.39 0.87 35.04 2.41
820 824 9.438291 CAATGGATTCGAAGATAAACATGTTAC 57.562 33.333 12.39 6.86 35.04 2.50
821 825 8.731275 ATGGATTCGAAGATAAACATGTTACA 57.269 30.769 12.39 3.24 35.04 2.41
822 826 8.554835 TGGATTCGAAGATAAACATGTTACAA 57.445 30.769 12.39 0.90 35.04 2.41
823 827 8.447833 TGGATTCGAAGATAAACATGTTACAAC 58.552 33.333 12.39 2.04 35.04 3.32
824 828 8.447833 GGATTCGAAGATAAACATGTTACAACA 58.552 33.333 12.39 0.00 39.18 3.33
825 829 9.262472 GATTCGAAGATAAACATGTTACAACAC 57.738 33.333 12.39 2.48 38.00 3.32
826 830 7.716768 TCGAAGATAAACATGTTACAACACA 57.283 32.000 12.39 0.00 42.51 3.72
827 831 7.792925 TCGAAGATAAACATGTTACAACACAG 58.207 34.615 12.39 1.16 42.51 3.66
828 832 7.654116 TCGAAGATAAACATGTTACAACACAGA 59.346 33.333 12.39 3.53 42.51 3.41
829 833 7.952101 CGAAGATAAACATGTTACAACACAGAG 59.048 37.037 12.39 0.00 42.51 3.35
830 834 7.672983 AGATAAACATGTTACAACACAGAGG 57.327 36.000 12.39 0.00 42.51 3.69
831 835 6.655003 AGATAAACATGTTACAACACAGAGGG 59.345 38.462 12.39 0.00 42.51 4.30
837 841 1.488705 TACAACACAGAGGGGGCCTG 61.489 60.000 0.84 0.00 31.76 4.85
838 842 3.971702 AACACAGAGGGGGCCTGC 61.972 66.667 0.84 0.00 31.76 4.85
873 877 3.352338 CTACCACGGGCACGACTCC 62.352 68.421 19.19 0.00 44.60 3.85
874 878 3.873679 TACCACGGGCACGACTCCT 62.874 63.158 19.19 0.00 44.60 3.69
917 921 2.709475 GGCATCGACAACGCCATC 59.291 61.111 11.06 0.00 45.52 3.51
936 959 1.660917 CTCCCCGCCGATTAGTCTC 59.339 63.158 0.00 0.00 0.00 3.36
961 984 2.368439 ACCATCCGAATCACACATTGG 58.632 47.619 0.00 0.00 0.00 3.16
1092 1141 1.458588 GATTCTCCTCCGCCTCCCT 60.459 63.158 0.00 0.00 0.00 4.20
1335 1387 1.596203 CATCATCGACTGCCGCCAT 60.596 57.895 0.00 0.00 38.37 4.40
1769 1881 6.357367 CAGCACCTGTAGAACCCTATAAAAT 58.643 40.000 0.00 0.00 0.00 1.82
1886 2004 2.299867 GTTTGGATGTTTGGGTGCTCAT 59.700 45.455 0.00 0.00 0.00 2.90
1961 2082 2.757980 TTAGTGGGGTTTGCCGAGGC 62.758 60.000 7.26 7.26 42.35 4.70
2097 2221 8.908786 TTGAATATTTCTATCCTGCAGGTAAG 57.091 34.615 31.58 26.73 36.34 2.34
2318 5242 9.793259 TTAAAGTCATTGTTCTTCTCTATTGGT 57.207 29.630 0.00 0.00 0.00 3.67
2319 5243 7.913674 AAGTCATTGTTCTTCTCTATTGGTC 57.086 36.000 0.00 0.00 0.00 4.02
2320 5244 7.009179 AGTCATTGTTCTTCTCTATTGGTCA 57.991 36.000 0.00 0.00 0.00 4.02
2321 5245 7.628234 AGTCATTGTTCTTCTCTATTGGTCAT 58.372 34.615 0.00 0.00 0.00 3.06
2322 5246 8.762645 AGTCATTGTTCTTCTCTATTGGTCATA 58.237 33.333 0.00 0.00 0.00 2.15
2323 5247 9.553064 GTCATTGTTCTTCTCTATTGGTCATAT 57.447 33.333 0.00 0.00 0.00 1.78
2383 5315 9.935241 CTTGTGTGCCTATCTGAAGTATATATT 57.065 33.333 0.00 0.00 0.00 1.28
2423 5355 1.401552 TGCATAACAGCTGGAAATCGC 59.598 47.619 19.93 12.79 34.99 4.58
2517 5461 4.079958 AGCCGGGACCTATTATGTTTCTTT 60.080 41.667 2.18 0.00 0.00 2.52
2518 5462 4.275196 GCCGGGACCTATTATGTTTCTTTC 59.725 45.833 2.18 0.00 0.00 2.62
2519 5463 5.433526 CCGGGACCTATTATGTTTCTTTCA 58.566 41.667 0.00 0.00 0.00 2.69
2537 5483 9.765795 TTTCTTTCAGGTTTTAAGTTTTGTCAA 57.234 25.926 0.00 0.00 0.00 3.18
2538 5484 9.936759 TTCTTTCAGGTTTTAAGTTTTGTCAAT 57.063 25.926 0.00 0.00 0.00 2.57
2677 5638 2.815503 TCTCTTGACAATGTGCCACATG 59.184 45.455 11.79 8.25 37.97 3.21
2681 5642 2.516906 TGACAATGTGCCACATGACAT 58.483 42.857 11.79 0.00 37.97 3.06
2740 5772 5.607119 AAACAGCTTAATGTGTAACTCCG 57.393 39.130 0.00 0.00 38.04 4.63
2871 5908 3.960102 TGAGGAGTCCATTTGCAGTTTTT 59.040 39.130 12.86 0.00 0.00 1.94
2920 5957 5.415701 ACCAGCTTAATGTGTAACTCCATTG 59.584 40.000 0.00 0.00 38.04 2.82
2932 5969 1.615392 ACTCCATTGGCACTTTTCTGC 59.385 47.619 0.00 0.00 36.33 4.26
2948 5985 2.703416 TCTGCATGTCTCATGTTGTCC 58.297 47.619 10.68 0.00 0.00 4.02
2989 6030 4.066490 CGTCTCGGTTCACCTAGATATCT 58.934 47.826 10.73 10.73 39.59 1.98
3165 6216 2.602257 TGCGATGACTGATAAGGTGG 57.398 50.000 0.00 0.00 0.00 4.61
3180 6231 3.447918 AGGTGGACGTAACATTATCGG 57.552 47.619 0.00 0.00 0.00 4.18
3181 6232 2.762327 AGGTGGACGTAACATTATCGGT 59.238 45.455 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.605319 GAAGACAATGTCCACGGCCA 60.605 55.000 10.12 0.00 32.18 5.36
73 74 1.808411 GGCGAAGAAGACAATGTCCA 58.192 50.000 10.12 0.00 32.18 4.02
80 81 2.430244 GCGACGGCGAAGAAGACA 60.430 61.111 18.90 0.00 40.82 3.41
359 363 5.768164 AGTTGGTTCCAGATTTGTACGAATT 59.232 36.000 9.75 0.00 0.00 2.17
508 512 2.368875 GGATTCTCCCACGGACATGTAT 59.631 50.000 0.00 0.00 0.00 2.29
590 594 2.092429 TGGTCAGACAAGAACTGGCTTT 60.092 45.455 2.17 0.00 42.74 3.51
619 623 4.336713 GGCTTCAACTCTGTCAAAGTCTTT 59.663 41.667 0.00 0.00 0.00 2.52
633 637 6.775594 AGTTTAAACTGAAAGGCTTCAACT 57.224 33.333 19.94 0.00 41.05 3.16
666 670 4.226384 ACCCTTCCTTGCAGATTTTTCTT 58.774 39.130 0.00 0.00 0.00 2.52
778 782 4.700213 ATCCATTGGATTCGAGTTTTTCGT 59.300 37.500 12.62 0.00 39.79 3.85
811 815 3.486383 CCCCTCTGTGTTGTAACATGTT 58.514 45.455 16.68 16.68 41.59 2.71
812 816 2.224769 CCCCCTCTGTGTTGTAACATGT 60.225 50.000 0.26 0.00 41.59 3.21
813 817 2.436417 CCCCCTCTGTGTTGTAACATG 58.564 52.381 0.26 0.00 41.59 3.21
814 818 1.271926 GCCCCCTCTGTGTTGTAACAT 60.272 52.381 0.26 0.00 41.59 2.71
815 819 0.109723 GCCCCCTCTGTGTTGTAACA 59.890 55.000 0.00 0.00 36.38 2.41
816 820 0.608308 GGCCCCCTCTGTGTTGTAAC 60.608 60.000 0.00 0.00 0.00 2.50
817 821 0.770557 AGGCCCCCTCTGTGTTGTAA 60.771 55.000 0.00 0.00 0.00 2.41
818 822 1.151899 AGGCCCCCTCTGTGTTGTA 60.152 57.895 0.00 0.00 0.00 2.41
819 823 2.450502 AGGCCCCCTCTGTGTTGT 60.451 61.111 0.00 0.00 0.00 3.32
820 824 2.034687 CAGGCCCCCTCTGTGTTG 59.965 66.667 0.00 0.00 0.00 3.33
821 825 3.971702 GCAGGCCCCCTCTGTGTT 61.972 66.667 0.00 0.00 34.89 3.32
903 907 1.144057 GGAGGATGGCGTTGTCGAT 59.856 57.895 0.00 0.00 39.71 3.59
917 921 1.807495 GAGACTAATCGGCGGGGAGG 61.807 65.000 7.21 0.00 0.00 4.30
929 933 1.200519 CGGATGGTTGGGGAGACTAA 58.799 55.000 0.00 0.00 0.00 2.24
936 959 0.034574 TGTGATTCGGATGGTTGGGG 60.035 55.000 0.00 0.00 0.00 4.96
961 984 2.370445 TAGGGCTTGCAGCTCCTCC 61.370 63.158 15.81 7.04 44.67 4.30
1092 1141 4.332543 AGGGAGGAAGGCCGTGGA 62.333 66.667 0.00 0.00 39.96 4.02
1200 1252 0.973496 GGAAGAAGCCGAGGAGAGGT 60.973 60.000 0.00 0.00 0.00 3.85
1769 1881 1.034838 GGCCGGCACAATCCATAACA 61.035 55.000 30.85 0.00 0.00 2.41
1886 2004 5.423610 AGCTCCTCAAACTCAATAGCTCTAA 59.576 40.000 0.00 0.00 33.78 2.10
1930 2048 0.108138 CCCACTAAAGCGAGAGGGTG 60.108 60.000 9.63 0.00 41.22 4.61
1961 2082 3.845178 TGTACAAGGACTGCATTACTCG 58.155 45.455 0.00 0.00 0.00 4.18
2097 2221 9.399403 GCAAAGTAATTATATAAAGGCTTGCTC 57.601 33.333 0.00 6.37 0.00 4.26
2157 4981 6.309357 AGGATATGATAGGCATTTCAGCAAA 58.691 36.000 0.00 0.00 36.88 3.68
2230 5056 7.494625 CCATTTAAAGAATTCATCAAGCAGCAT 59.505 33.333 8.44 0.00 0.00 3.79
2296 5220 7.009179 TGACCAATAGAGAAGAACAATGACT 57.991 36.000 0.00 0.00 0.00 3.41
2324 5248 9.926158 TTTGAAACACAATTTATGCATATGAGT 57.074 25.926 7.36 5.23 38.36 3.41
2423 5355 3.974401 CACAAATGACAAAACTACTGCGG 59.026 43.478 0.00 0.00 0.00 5.69
2526 5470 9.106070 AGAACGAACTAAGTATTGACAAAACTT 57.894 29.630 0.00 0.00 37.27 2.66
2537 5483 5.047235 AGACCAAGCAGAACGAACTAAGTAT 60.047 40.000 0.00 0.00 0.00 2.12
2538 5484 4.280174 AGACCAAGCAGAACGAACTAAGTA 59.720 41.667 0.00 0.00 0.00 2.24
2539 5485 3.069729 AGACCAAGCAGAACGAACTAAGT 59.930 43.478 0.00 0.00 0.00 2.24
2606 5552 0.508641 CACAGTTCACGCGGAAGAAG 59.491 55.000 12.47 6.56 35.82 2.85
2677 5638 6.581171 AGTTCTCTCCCATTTTCAAATGTC 57.419 37.500 10.63 0.00 43.24 3.06
2681 5642 7.728083 TCCATTTAGTTCTCTCCCATTTTCAAA 59.272 33.333 0.00 0.00 0.00 2.69
2740 5772 5.276207 GCTTTAAGTTTCGAAAAGTGCCAAC 60.276 40.000 13.10 0.00 33.67 3.77
2827 5864 9.401058 CCTCACTTCAGGAAGATATTTAACAAT 57.599 33.333 15.51 0.00 40.79 2.71
2920 5957 1.881973 TGAGACATGCAGAAAAGTGCC 59.118 47.619 0.00 0.00 43.28 5.01
2932 5969 5.876460 TGTAATCTGGACAACATGAGACATG 59.124 40.000 0.00 9.72 0.00 3.21
2948 5985 5.271625 AGACGTGCGTACTTATGTAATCTG 58.728 41.667 0.00 0.00 0.00 2.90
3025 6067 8.695456 AGTAAGTCAGAAACCAATGACAATTTT 58.305 29.630 7.94 0.00 46.63 1.82
3026 6068 8.237811 AGTAAGTCAGAAACCAATGACAATTT 57.762 30.769 7.94 0.00 46.63 1.82
3165 6216 3.800506 CCTCCAACCGATAATGTTACGTC 59.199 47.826 0.00 0.00 0.00 4.34
3222 6273 2.048601 TCAAAGCCCATGCACCAAC 58.951 52.632 0.00 0.00 41.13 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.