Multiple sequence alignment - TraesCS3A01G445800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G445800 chr3A 100.000 4366 0 0 1 4366 686552626 686548261 0.000000e+00 8063.0
1 TraesCS3A01G445800 chr3A 98.253 458 8 0 1767 2224 11685509 11685052 0.000000e+00 802.0
2 TraesCS3A01G445800 chr3A 83.784 851 103 27 2795 3621 601133162 601132323 0.000000e+00 774.0
3 TraesCS3A01G445800 chr3A 97.968 443 9 0 2297 2739 11684699 11684257 0.000000e+00 769.0
4 TraesCS3A01G445800 chr3A 97.887 426 9 0 2314 2739 11710064 11709639 0.000000e+00 737.0
5 TraesCS3A01G445800 chr3A 82.189 859 109 24 2788 3621 686183879 686184718 0.000000e+00 699.0
6 TraesCS3A01G445800 chr3A 81.998 811 84 36 987 1763 686749869 686749087 2.220000e-177 632.0
7 TraesCS3A01G445800 chr3A 86.154 520 66 1 995 1514 686189708 686190221 1.370000e-154 556.0
8 TraesCS3A01G445800 chr3A 81.446 733 86 34 3649 4366 686708846 686708149 4.930000e-154 555.0
9 TraesCS3A01G445800 chr3A 80.362 718 108 22 3644 4357 686537583 686536895 8.370000e-142 514.0
10 TraesCS3A01G445800 chr3A 81.890 381 50 11 3247 3621 686191336 686191703 1.970000e-78 303.0
11 TraesCS3A01G445800 chr3A 83.267 251 24 8 3646 3895 601132246 601132013 9.510000e-52 215.0
12 TraesCS3A01G445800 chr4A 97.331 974 6 2 1766 2739 614874564 614873611 0.000000e+00 1637.0
13 TraesCS3A01G445800 chr4A 81.614 223 24 14 282 496 643691911 643692124 7.510000e-38 169.0
14 TraesCS3A01G445800 chr6A 95.786 973 8 3 1767 2739 141374714 141375653 0.000000e+00 1539.0
15 TraesCS3A01G445800 chr6A 92.794 1013 32 13 1766 2748 29295037 29294036 0.000000e+00 1428.0
16 TraesCS3A01G445800 chr6A 91.617 501 36 5 1767 2261 100303015 100302515 0.000000e+00 688.0
17 TraesCS3A01G445800 chr6A 78.077 260 48 8 282 539 539979233 539979485 5.850000e-34 156.0
18 TraesCS3A01G445800 chr5B 93.744 991 34 14 1773 2735 534307788 534308778 0.000000e+00 1461.0
19 TraesCS3A01G445800 chr5B 89.474 798 37 19 1767 2532 208443726 208442944 0.000000e+00 965.0
20 TraesCS3A01G445800 chr5B 90.838 382 18 3 4002 4366 332839235 332838854 3.030000e-136 496.0
21 TraesCS3A01G445800 chr7A 92.515 1002 46 8 1766 2739 468299483 468300483 0.000000e+00 1408.0
22 TraesCS3A01G445800 chr7A 100.000 28 0 0 773 800 59019418 59019445 8.000000e-03 52.8
23 TraesCS3A01G445800 chr7A 100.000 28 0 0 773 800 59119113 59119140 8.000000e-03 52.8
24 TraesCS3A01G445800 chr7A 100.000 28 0 0 773 800 59119307 59119334 8.000000e-03 52.8
25 TraesCS3A01G445800 chr7A 100.000 28 0 0 773 800 172918610 172918637 8.000000e-03 52.8
26 TraesCS3A01G445800 chr3B 92.415 1002 48 10 1766 2739 292164410 292163409 0.000000e+00 1404.0
27 TraesCS3A01G445800 chr3B 93.431 822 36 9 962 1765 728585894 728585073 0.000000e+00 1203.0
28 TraesCS3A01G445800 chr3B 89.960 747 60 7 3626 4366 728584161 728583424 0.000000e+00 950.0
29 TraesCS3A01G445800 chr3B 87.449 733 44 17 1767 2467 235858281 235857565 0.000000e+00 800.0
30 TraesCS3A01G445800 chr3B 82.649 853 109 26 2795 3621 605911974 605911135 0.000000e+00 719.0
31 TraesCS3A01G445800 chr3B 93.148 467 31 1 2740 3205 728585079 728584613 0.000000e+00 684.0
32 TraesCS3A01G445800 chr3B 80.716 866 115 29 2788 3621 727741401 727742246 1.030000e-175 627.0
33 TraesCS3A01G445800 chr3B 85.622 619 57 16 911 1514 728890822 728890221 4.800000e-174 621.0
34 TraesCS3A01G445800 chr3B 85.385 520 67 4 995 1514 727786514 727787024 8.310000e-147 531.0
35 TraesCS3A01G445800 chr3B 80.163 736 93 32 3646 4366 605911058 605910361 6.520000e-138 501.0
36 TraesCS3A01G445800 chr3B 89.005 382 23 9 4002 4366 45486295 45485916 5.150000e-124 455.0
37 TraesCS3A01G445800 chr3B 92.308 299 20 2 3304 3602 728584582 728584287 5.220000e-114 422.0
38 TraesCS3A01G445800 chr3B 82.268 485 60 11 3644 4128 728509137 728508679 3.160000e-106 396.0
39 TraesCS3A01G445800 chr3B 82.105 380 50 10 3247 3621 727789273 727789639 4.240000e-80 309.0
40 TraesCS3A01G445800 chr3B 77.358 477 77 17 1298 1763 728617857 728617401 2.020000e-63 254.0
41 TraesCS3A01G445800 chr3B 77.073 410 61 17 3832 4234 728803576 728803193 5.720000e-49 206.0
42 TraesCS3A01G445800 chr3B 87.742 155 17 2 804 957 728586090 728585937 3.470000e-41 180.0
43 TraesCS3A01G445800 chr3B 80.769 234 34 9 288 515 780235858 780235630 5.810000e-39 172.0
44 TraesCS3A01G445800 chr7B 92.430 1004 42 18 1766 2739 728657156 728658155 0.000000e+00 1402.0
45 TraesCS3A01G445800 chr7B 93.200 853 36 13 1908 2739 29703007 29703858 0.000000e+00 1234.0
46 TraesCS3A01G445800 chr7B 89.161 572 49 7 1974 2532 680641253 680641824 0.000000e+00 701.0
47 TraesCS3A01G445800 chr7B 88.596 570 52 7 1976 2532 680633967 680634536 0.000000e+00 680.0
48 TraesCS3A01G445800 chr7B 87.282 574 57 10 1974 2532 680627186 680627758 3.680000e-180 641.0
49 TraesCS3A01G445800 chr7B 80.675 859 120 28 2788 3613 543187796 543188641 3.710000e-175 625.0
50 TraesCS3A01G445800 chr7B 91.421 373 15 3 4011 4366 596463069 596462697 3.030000e-136 496.0
51 TraesCS3A01G445800 chr7B 78.277 267 39 16 283 534 80525690 80525428 2.100000e-33 154.0
52 TraesCS3A01G445800 chr3D 92.558 739 37 7 1045 1765 549074044 549073306 0.000000e+00 1044.0
53 TraesCS3A01G445800 chr3D 87.290 834 70 14 3543 4354 549066792 549065973 0.000000e+00 920.0
54 TraesCS3A01G445800 chr3D 89.983 589 28 15 1839 2406 315763935 315763357 0.000000e+00 732.0
55 TraesCS3A01G445800 chr3D 95.291 446 20 1 2740 3184 549073312 549072867 0.000000e+00 706.0
56 TraesCS3A01G445800 chr3D 81.148 854 110 29 2788 3610 548695140 548695973 4.760000e-179 638.0
57 TraesCS3A01G445800 chr3D 81.088 809 94 33 987 1763 549468028 549467247 3.760000e-165 592.0
58 TraesCS3A01G445800 chr3D 80.482 830 103 28 971 1764 548711701 548712507 8.140000e-162 580.0
59 TraesCS3A01G445800 chr3D 86.538 520 64 1 995 1514 548725546 548726059 6.340000e-158 568.0
60 TraesCS3A01G445800 chr3D 79.371 858 116 31 2791 3621 549126408 549125585 8.260000e-152 547.0
61 TraesCS3A01G445800 chr3D 80.933 729 94 30 3646 4366 458884233 458883542 6.430000e-148 534.0
62 TraesCS3A01G445800 chr3D 79.972 724 112 22 3647 4366 549060282 549059588 1.810000e-138 503.0
63 TraesCS3A01G445800 chr3D 91.057 369 28 4 3180 3546 549067314 549066949 1.090000e-135 494.0
64 TraesCS3A01G445800 chr3D 83.303 545 76 11 2783 3317 549349017 549348478 5.080000e-134 488.0
65 TraesCS3A01G445800 chr3D 84.922 451 52 12 3169 3613 549052512 549052072 4.010000e-120 442.0
66 TraesCS3A01G445800 chr3D 85.758 330 44 3 2783 3111 549467214 549466887 3.230000e-91 346.0
67 TraesCS3A01G445800 chr3D 83.202 381 45 11 3247 3621 548726928 548727295 9.050000e-87 331.0
68 TraesCS3A01G445800 chr3D 78.414 454 75 14 3645 4091 549348275 549347838 1.550000e-69 274.0
69 TraesCS3A01G445800 chr3D 88.660 194 16 4 804 997 549074713 549074526 9.440000e-57 231.0
70 TraesCS3A01G445800 chr3D 82.273 220 31 7 282 496 393649231 393649447 2.680000e-42 183.0
71 TraesCS3A01G445800 chr4B 89.401 802 38 19 1763 2532 251666079 251666865 0.000000e+00 966.0
72 TraesCS3A01G445800 chr4B 89.791 382 22 3 4002 4366 563417489 563417870 1.420000e-129 473.0
73 TraesCS3A01G445800 chr4B 87.795 254 14 4 4130 4366 388481690 388481943 9.240000e-72 281.0
74 TraesCS3A01G445800 chr4B 87.795 254 14 4 4130 4366 627662049 627662302 9.240000e-72 281.0
75 TraesCS3A01G445800 chr4B 87.008 254 16 5 4130 4366 663343755 663343502 2.000000e-68 270.0
76 TraesCS3A01G445800 chr4B 86.694 248 16 9 4136 4366 662665520 662665273 4.330000e-65 259.0
77 TraesCS3A01G445800 chr4B 82.805 221 31 5 282 496 465016917 465016698 1.600000e-44 191.0
78 TraesCS3A01G445800 chr6B 90.314 382 20 4 4002 4366 49999324 49999705 6.560000e-133 484.0
79 TraesCS3A01G445800 chr2B 90.263 380 20 3 4002 4364 573825879 573826258 8.490000e-132 481.0
80 TraesCS3A01G445800 chr2B 100.000 28 0 0 773 800 609140859 609140886 8.000000e-03 52.8
81 TraesCS3A01G445800 chrUn 90.270 370 19 5 4014 4366 361110351 361109982 6.610000e-128 468.0
82 TraesCS3A01G445800 chr1A 88.189 254 13 4 4130 4366 19792728 19792981 1.990000e-73 287.0
83 TraesCS3A01G445800 chr7D 81.609 261 33 13 285 536 153125798 153126052 7.400000e-48 202.0
84 TraesCS3A01G445800 chr1D 79.322 295 45 16 282 567 481643410 481643123 4.460000e-45 193.0
85 TraesCS3A01G445800 chr1D 85.635 181 19 6 291 466 233788557 233788379 2.680000e-42 183.0
86 TraesCS3A01G445800 chr5D 88.312 77 9 0 679 755 70485901 70485977 4.650000e-15 93.5
87 TraesCS3A01G445800 chr5D 100.000 28 0 0 773 800 105020875 105020848 8.000000e-03 52.8
88 TraesCS3A01G445800 chr2D 78.082 146 19 11 603 737 591977155 591977298 3.620000e-11 80.5
89 TraesCS3A01G445800 chr4D 100.000 28 0 0 773 800 8879405 8879378 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G445800 chr3A 686548261 686552626 4365 True 8063.000000 8063 100.000000 1 4366 1 chr3A.!!$R3 4365
1 TraesCS3A01G445800 chr3A 11684257 11685509 1252 True 785.500000 802 98.110500 1767 2739 2 chr3A.!!$R6 972
2 TraesCS3A01G445800 chr3A 686183879 686184718 839 False 699.000000 699 82.189000 2788 3621 1 chr3A.!!$F1 833
3 TraesCS3A01G445800 chr3A 686749087 686749869 782 True 632.000000 632 81.998000 987 1763 1 chr3A.!!$R5 776
4 TraesCS3A01G445800 chr3A 686708149 686708846 697 True 555.000000 555 81.446000 3649 4366 1 chr3A.!!$R4 717
5 TraesCS3A01G445800 chr3A 686536895 686537583 688 True 514.000000 514 80.362000 3644 4357 1 chr3A.!!$R2 713
6 TraesCS3A01G445800 chr3A 601132013 601133162 1149 True 494.500000 774 83.525500 2795 3895 2 chr3A.!!$R7 1100
7 TraesCS3A01G445800 chr3A 686189708 686191703 1995 False 429.500000 556 84.022000 995 3621 2 chr3A.!!$F2 2626
8 TraesCS3A01G445800 chr4A 614873611 614874564 953 True 1637.000000 1637 97.331000 1766 2739 1 chr4A.!!$R1 973
9 TraesCS3A01G445800 chr6A 141374714 141375653 939 False 1539.000000 1539 95.786000 1767 2739 1 chr6A.!!$F1 972
10 TraesCS3A01G445800 chr6A 29294036 29295037 1001 True 1428.000000 1428 92.794000 1766 2748 1 chr6A.!!$R1 982
11 TraesCS3A01G445800 chr6A 100302515 100303015 500 True 688.000000 688 91.617000 1767 2261 1 chr6A.!!$R2 494
12 TraesCS3A01G445800 chr5B 534307788 534308778 990 False 1461.000000 1461 93.744000 1773 2735 1 chr5B.!!$F1 962
13 TraesCS3A01G445800 chr5B 208442944 208443726 782 True 965.000000 965 89.474000 1767 2532 1 chr5B.!!$R1 765
14 TraesCS3A01G445800 chr7A 468299483 468300483 1000 False 1408.000000 1408 92.515000 1766 2739 1 chr7A.!!$F3 973
15 TraesCS3A01G445800 chr3B 292163409 292164410 1001 True 1404.000000 1404 92.415000 1766 2739 1 chr3B.!!$R3 973
16 TraesCS3A01G445800 chr3B 235857565 235858281 716 True 800.000000 800 87.449000 1767 2467 1 chr3B.!!$R2 700
17 TraesCS3A01G445800 chr3B 728583424 728586090 2666 True 687.800000 1203 91.317800 804 4366 5 chr3B.!!$R10 3562
18 TraesCS3A01G445800 chr3B 727741401 727742246 845 False 627.000000 627 80.716000 2788 3621 1 chr3B.!!$F1 833
19 TraesCS3A01G445800 chr3B 728890221 728890822 601 True 621.000000 621 85.622000 911 1514 1 chr3B.!!$R7 603
20 TraesCS3A01G445800 chr3B 605910361 605911974 1613 True 610.000000 719 81.406000 2795 4366 2 chr3B.!!$R9 1571
21 TraesCS3A01G445800 chr3B 727786514 727789639 3125 False 420.000000 531 83.745000 995 3621 2 chr3B.!!$F2 2626
22 TraesCS3A01G445800 chr7B 728657156 728658155 999 False 1402.000000 1402 92.430000 1766 2739 1 chr7B.!!$F6 973
23 TraesCS3A01G445800 chr7B 29703007 29703858 851 False 1234.000000 1234 93.200000 1908 2739 1 chr7B.!!$F1 831
24 TraesCS3A01G445800 chr7B 680641253 680641824 571 False 701.000000 701 89.161000 1974 2532 1 chr7B.!!$F5 558
25 TraesCS3A01G445800 chr7B 680633967 680634536 569 False 680.000000 680 88.596000 1976 2532 1 chr7B.!!$F4 556
26 TraesCS3A01G445800 chr7B 680627186 680627758 572 False 641.000000 641 87.282000 1974 2532 1 chr7B.!!$F3 558
27 TraesCS3A01G445800 chr7B 543187796 543188641 845 False 625.000000 625 80.675000 2788 3613 1 chr7B.!!$F2 825
28 TraesCS3A01G445800 chr3D 315763357 315763935 578 True 732.000000 732 89.983000 1839 2406 1 chr3D.!!$R1 567
29 TraesCS3A01G445800 chr3D 549065973 549067314 1341 True 707.000000 920 89.173500 3180 4354 2 chr3D.!!$R6 1174
30 TraesCS3A01G445800 chr3D 549072867 549074713 1846 True 660.333333 1044 92.169667 804 3184 3 chr3D.!!$R7 2380
31 TraesCS3A01G445800 chr3D 548695140 548695973 833 False 638.000000 638 81.148000 2788 3610 1 chr3D.!!$F2 822
32 TraesCS3A01G445800 chr3D 548711701 548712507 806 False 580.000000 580 80.482000 971 1764 1 chr3D.!!$F3 793
33 TraesCS3A01G445800 chr3D 549125585 549126408 823 True 547.000000 547 79.371000 2791 3621 1 chr3D.!!$R5 830
34 TraesCS3A01G445800 chr3D 458883542 458884233 691 True 534.000000 534 80.933000 3646 4366 1 chr3D.!!$R2 720
35 TraesCS3A01G445800 chr3D 549059588 549060282 694 True 503.000000 503 79.972000 3647 4366 1 chr3D.!!$R4 719
36 TraesCS3A01G445800 chr3D 549466887 549468028 1141 True 469.000000 592 83.423000 987 3111 2 chr3D.!!$R9 2124
37 TraesCS3A01G445800 chr3D 548725546 548727295 1749 False 449.500000 568 84.870000 995 3621 2 chr3D.!!$F4 2626
38 TraesCS3A01G445800 chr3D 549347838 549349017 1179 True 381.000000 488 80.858500 2783 4091 2 chr3D.!!$R8 1308
39 TraesCS3A01G445800 chr4B 251666079 251666865 786 False 966.000000 966 89.401000 1763 2532 1 chr4B.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.035458 CCCCGGGAATGCTATGTCTC 59.965 60.0 26.32 0.0 0.00 3.36 F
196 197 0.173255 CTAAATTGGTTGGCCCAGCG 59.827 55.0 0.00 0.0 46.31 5.18 F
842 845 0.906066 TAAACGGGCATCTGTAGGCA 59.094 50.0 0.00 0.0 32.88 4.75 F
2847 3767 0.032678 ACGCGCAGATATGGAAGAGG 59.967 55.0 5.73 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2487 1.006639 AGGGGTTGCCGTATCCAAAAT 59.993 47.619 0.0 0.0 0.0 1.82 R
2739 3656 0.617820 ATCCGGCTTCTAGGTGTGGT 60.618 55.000 0.0 0.0 0.0 4.16 R
3303 6003 1.680735 GGCACACAAGACCACATTTGA 59.319 47.619 0.0 0.0 0.0 2.69 R
3962 7034 0.553333 TTCACCACCACCATGTCCAA 59.447 50.000 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.806654 AAAAATAGCCCAAAAGCTTCAGA 57.193 34.783 0.00 0.00 41.41 3.27
44 45 5.806654 AAAATAGCCCAAAAGCTTCAGAA 57.193 34.783 0.00 0.00 41.41 3.02
45 46 4.790765 AATAGCCCAAAAGCTTCAGAAC 57.209 40.909 0.00 0.00 41.41 3.01
46 47 2.071778 AGCCCAAAAGCTTCAGAACA 57.928 45.000 0.00 0.00 41.41 3.18
47 48 1.959282 AGCCCAAAAGCTTCAGAACAG 59.041 47.619 0.00 0.00 41.41 3.16
48 49 1.603931 GCCCAAAAGCTTCAGAACAGC 60.604 52.381 0.00 0.00 37.56 4.40
76 77 2.597510 GCCCAAAAGCCCGTGTCT 60.598 61.111 0.00 0.00 0.00 3.41
77 78 2.626780 GCCCAAAAGCCCGTGTCTC 61.627 63.158 0.00 0.00 0.00 3.36
78 79 1.228124 CCCAAAAGCCCGTGTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
79 80 0.609131 CCCAAAAGCCCGTGTCTCAT 60.609 55.000 0.00 0.00 0.00 2.90
80 81 1.339631 CCCAAAAGCCCGTGTCTCATA 60.340 52.381 0.00 0.00 0.00 2.15
81 82 2.432444 CCAAAAGCCCGTGTCTCATAA 58.568 47.619 0.00 0.00 0.00 1.90
82 83 3.016736 CCAAAAGCCCGTGTCTCATAAT 58.983 45.455 0.00 0.00 0.00 1.28
83 84 3.065371 CCAAAAGCCCGTGTCTCATAATC 59.935 47.826 0.00 0.00 0.00 1.75
84 85 2.225068 AAGCCCGTGTCTCATAATCG 57.775 50.000 0.00 0.00 0.00 3.34
85 86 1.399714 AGCCCGTGTCTCATAATCGA 58.600 50.000 0.00 0.00 0.00 3.59
86 87 1.964223 AGCCCGTGTCTCATAATCGAT 59.036 47.619 0.00 0.00 0.00 3.59
87 88 3.154710 AGCCCGTGTCTCATAATCGATA 58.845 45.455 0.00 0.00 0.00 2.92
88 89 3.572682 AGCCCGTGTCTCATAATCGATAA 59.427 43.478 0.00 0.00 0.00 1.75
89 90 4.038763 AGCCCGTGTCTCATAATCGATAAA 59.961 41.667 0.00 0.00 0.00 1.40
90 91 4.748102 GCCCGTGTCTCATAATCGATAAAA 59.252 41.667 0.00 0.00 0.00 1.52
91 92 5.408604 GCCCGTGTCTCATAATCGATAAAAT 59.591 40.000 0.00 0.00 0.00 1.82
92 93 6.618592 GCCCGTGTCTCATAATCGATAAAATG 60.619 42.308 0.00 3.70 0.00 2.32
93 94 6.128553 CCCGTGTCTCATAATCGATAAAATGG 60.129 42.308 0.00 0.00 0.00 3.16
94 95 6.128553 CCGTGTCTCATAATCGATAAAATGGG 60.129 42.308 0.00 3.61 0.00 4.00
95 96 6.603095 GTGTCTCATAATCGATAAAATGGGC 58.397 40.000 0.00 1.43 0.00 5.36
96 97 5.705441 TGTCTCATAATCGATAAAATGGGCC 59.295 40.000 0.00 0.00 0.00 5.80
97 98 5.705441 GTCTCATAATCGATAAAATGGGCCA 59.295 40.000 9.61 9.61 0.00 5.36
98 99 5.705441 TCTCATAATCGATAAAATGGGCCAC 59.295 40.000 9.28 0.00 0.00 5.01
99 100 4.454161 TCATAATCGATAAAATGGGCCACG 59.546 41.667 9.28 7.06 0.00 4.94
100 101 2.631160 ATCGATAAAATGGGCCACGA 57.369 45.000 9.28 13.34 0.00 4.35
101 102 1.948104 TCGATAAAATGGGCCACGAG 58.052 50.000 9.28 0.00 0.00 4.18
102 103 0.307760 CGATAAAATGGGCCACGAGC 59.692 55.000 9.28 0.00 42.60 5.03
112 113 4.856801 CCACGAGCCCCGGGAATG 62.857 72.222 26.32 11.48 46.66 2.67
115 116 3.546543 CGAGCCCCGGGAATGCTA 61.547 66.667 26.32 0.00 34.99 3.49
116 117 2.883828 CGAGCCCCGGGAATGCTAT 61.884 63.158 26.32 1.07 34.99 2.97
117 118 1.302832 GAGCCCCGGGAATGCTATG 60.303 63.158 26.32 2.75 34.99 2.23
118 119 2.056906 GAGCCCCGGGAATGCTATGT 62.057 60.000 26.32 0.00 34.99 2.29
119 120 1.600916 GCCCCGGGAATGCTATGTC 60.601 63.158 26.32 0.00 0.00 3.06
120 121 2.056906 GCCCCGGGAATGCTATGTCT 62.057 60.000 26.32 0.00 0.00 3.41
121 122 0.035458 CCCCGGGAATGCTATGTCTC 59.965 60.000 26.32 0.00 0.00 3.36
122 123 0.758734 CCCGGGAATGCTATGTCTCA 59.241 55.000 18.48 0.00 0.00 3.27
123 124 1.541233 CCCGGGAATGCTATGTCTCAC 60.541 57.143 18.48 0.00 0.00 3.51
124 125 1.414181 CCGGGAATGCTATGTCTCACT 59.586 52.381 0.00 0.00 0.00 3.41
125 126 2.158900 CCGGGAATGCTATGTCTCACTT 60.159 50.000 0.00 0.00 0.00 3.16
126 127 3.069586 CCGGGAATGCTATGTCTCACTTA 59.930 47.826 0.00 0.00 0.00 2.24
127 128 4.262635 CCGGGAATGCTATGTCTCACTTAT 60.263 45.833 0.00 0.00 0.00 1.73
128 129 5.047306 CCGGGAATGCTATGTCTCACTTATA 60.047 44.000 0.00 0.00 0.00 0.98
129 130 6.096036 CGGGAATGCTATGTCTCACTTATAG 58.904 44.000 0.00 0.00 0.00 1.31
130 131 6.294787 CGGGAATGCTATGTCTCACTTATAGT 60.295 42.308 0.00 0.00 0.00 2.12
153 154 7.881142 AGTGAGACATATAAGTGAGACATAGC 58.119 38.462 0.00 0.00 0.00 2.97
154 155 7.503902 AGTGAGACATATAAGTGAGACATAGCA 59.496 37.037 0.00 0.00 0.00 3.49
155 156 8.303156 GTGAGACATATAAGTGAGACATAGCAT 58.697 37.037 0.00 0.00 0.00 3.79
156 157 8.302438 TGAGACATATAAGTGAGACATAGCATG 58.698 37.037 0.00 0.00 0.00 4.06
157 158 7.095910 AGACATATAAGTGAGACATAGCATGC 58.904 38.462 10.51 10.51 0.00 4.06
158 159 6.762333 ACATATAAGTGAGACATAGCATGCA 58.238 36.000 21.98 6.36 0.00 3.96
159 160 6.648310 ACATATAAGTGAGACATAGCATGCAC 59.352 38.462 21.98 6.43 0.00 4.57
160 161 3.623906 AAGTGAGACATAGCATGCACT 57.376 42.857 21.98 8.90 38.14 4.40
161 162 3.176552 AGTGAGACATAGCATGCACTC 57.823 47.619 21.98 18.21 37.45 3.51
162 163 1.857217 GTGAGACATAGCATGCACTCG 59.143 52.381 21.98 7.67 38.74 4.18
163 164 0.857935 GAGACATAGCATGCACTCGC 59.142 55.000 21.98 6.11 39.24 5.03
164 165 0.873312 AGACATAGCATGCACTCGCG 60.873 55.000 21.98 0.00 42.97 5.87
165 166 1.148157 GACATAGCATGCACTCGCGT 61.148 55.000 21.98 7.67 42.97 6.01
166 167 1.148157 ACATAGCATGCACTCGCGTC 61.148 55.000 21.98 0.00 42.97 5.19
167 168 1.141665 ATAGCATGCACTCGCGTCA 59.858 52.632 21.98 0.42 42.97 4.35
168 169 0.873312 ATAGCATGCACTCGCGTCAG 60.873 55.000 21.98 0.00 42.97 3.51
169 170 2.889154 TAGCATGCACTCGCGTCAGG 62.889 60.000 21.98 3.42 42.97 3.86
170 171 2.433145 CATGCACTCGCGTCAGGT 60.433 61.111 5.77 0.00 42.97 4.00
171 172 2.433145 ATGCACTCGCGTCAGGTG 60.433 61.111 5.77 12.30 42.97 4.00
174 175 4.363990 CACTCGCGTCAGGTGCCT 62.364 66.667 5.77 0.00 0.00 4.75
175 176 3.616721 ACTCGCGTCAGGTGCCTT 61.617 61.111 5.77 0.00 0.00 4.35
176 177 2.811317 CTCGCGTCAGGTGCCTTC 60.811 66.667 5.77 0.00 0.00 3.46
177 178 4.373116 TCGCGTCAGGTGCCTTCC 62.373 66.667 5.77 0.00 0.00 3.46
178 179 4.379243 CGCGTCAGGTGCCTTCCT 62.379 66.667 0.00 0.00 38.51 3.36
179 180 2.978824 GCGTCAGGTGCCTTCCTA 59.021 61.111 0.00 0.00 35.87 2.94
180 181 1.295423 GCGTCAGGTGCCTTCCTAA 59.705 57.895 0.00 0.00 35.87 2.69
181 182 0.321298 GCGTCAGGTGCCTTCCTAAA 60.321 55.000 0.00 0.00 35.87 1.85
182 183 1.679032 GCGTCAGGTGCCTTCCTAAAT 60.679 52.381 0.00 0.00 35.87 1.40
183 184 2.711542 CGTCAGGTGCCTTCCTAAATT 58.288 47.619 0.00 0.00 35.87 1.82
184 185 2.420022 CGTCAGGTGCCTTCCTAAATTG 59.580 50.000 0.00 0.00 35.87 2.32
185 186 2.755103 GTCAGGTGCCTTCCTAAATTGG 59.245 50.000 0.00 0.00 35.87 3.16
186 187 2.378547 TCAGGTGCCTTCCTAAATTGGT 59.621 45.455 0.00 0.00 35.87 3.67
187 188 3.165071 CAGGTGCCTTCCTAAATTGGTT 58.835 45.455 0.00 0.00 35.87 3.67
188 189 3.056607 CAGGTGCCTTCCTAAATTGGTTG 60.057 47.826 0.00 0.00 35.87 3.77
189 190 2.233676 GGTGCCTTCCTAAATTGGTTGG 59.766 50.000 0.00 0.00 0.00 3.77
190 191 1.899142 TGCCTTCCTAAATTGGTTGGC 59.101 47.619 11.18 11.18 42.24 4.52
191 192 1.207089 GCCTTCCTAAATTGGTTGGCC 59.793 52.381 0.00 0.00 39.04 5.36
192 193 1.831106 CCTTCCTAAATTGGTTGGCCC 59.169 52.381 0.00 0.00 0.00 5.80
193 194 2.534990 CTTCCTAAATTGGTTGGCCCA 58.465 47.619 0.00 0.00 43.27 5.36
194 195 2.230130 TCCTAAATTGGTTGGCCCAG 57.770 50.000 0.00 0.00 46.31 4.45
195 196 0.536724 CCTAAATTGGTTGGCCCAGC 59.463 55.000 0.00 0.00 46.31 4.85
196 197 0.173255 CTAAATTGGTTGGCCCAGCG 59.827 55.000 0.00 0.00 46.31 5.18
197 198 1.882989 TAAATTGGTTGGCCCAGCGC 61.883 55.000 0.00 0.00 46.31 5.92
211 212 3.261951 GCGCGCTGCCTAAATCGA 61.262 61.111 26.67 0.00 37.76 3.59
212 213 2.808958 GCGCGCTGCCTAAATCGAA 61.809 57.895 26.67 0.00 37.76 3.71
213 214 1.273887 CGCGCTGCCTAAATCGAAG 59.726 57.895 5.56 0.00 0.00 3.79
214 215 1.643832 GCGCTGCCTAAATCGAAGG 59.356 57.895 0.00 0.00 37.17 3.46
222 223 1.401905 CCTAAATCGAAGGCCACAAGC 59.598 52.381 5.01 0.00 42.60 4.01
231 232 3.042560 GCCACAAGCCACTGTTCC 58.957 61.111 0.00 0.00 34.35 3.62
232 233 1.827789 GCCACAAGCCACTGTTCCA 60.828 57.895 0.00 0.00 34.35 3.53
233 234 1.181098 GCCACAAGCCACTGTTCCAT 61.181 55.000 0.00 0.00 34.35 3.41
234 235 1.331214 CCACAAGCCACTGTTCCATT 58.669 50.000 0.00 0.00 0.00 3.16
235 236 1.688197 CCACAAGCCACTGTTCCATTT 59.312 47.619 0.00 0.00 0.00 2.32
236 237 2.102925 CCACAAGCCACTGTTCCATTTT 59.897 45.455 0.00 0.00 0.00 1.82
237 238 3.432046 CCACAAGCCACTGTTCCATTTTT 60.432 43.478 0.00 0.00 0.00 1.94
238 239 4.202202 CCACAAGCCACTGTTCCATTTTTA 60.202 41.667 0.00 0.00 0.00 1.52
239 240 5.511202 CCACAAGCCACTGTTCCATTTTTAT 60.511 40.000 0.00 0.00 0.00 1.40
240 241 5.634859 CACAAGCCACTGTTCCATTTTTATC 59.365 40.000 0.00 0.00 0.00 1.75
241 242 4.701956 AGCCACTGTTCCATTTTTATCG 57.298 40.909 0.00 0.00 0.00 2.92
242 243 3.119495 AGCCACTGTTCCATTTTTATCGC 60.119 43.478 0.00 0.00 0.00 4.58
243 244 3.119495 GCCACTGTTCCATTTTTATCGCT 60.119 43.478 0.00 0.00 0.00 4.93
244 245 4.618227 GCCACTGTTCCATTTTTATCGCTT 60.618 41.667 0.00 0.00 0.00 4.68
245 246 4.858692 CCACTGTTCCATTTTTATCGCTTG 59.141 41.667 0.00 0.00 0.00 4.01
246 247 5.460646 CACTGTTCCATTTTTATCGCTTGT 58.539 37.500 0.00 0.00 0.00 3.16
247 248 5.920273 CACTGTTCCATTTTTATCGCTTGTT 59.080 36.000 0.00 0.00 0.00 2.83
248 249 6.088085 CACTGTTCCATTTTTATCGCTTGTTC 59.912 38.462 0.00 0.00 0.00 3.18
249 250 6.078202 TGTTCCATTTTTATCGCTTGTTCA 57.922 33.333 0.00 0.00 0.00 3.18
250 251 5.918011 TGTTCCATTTTTATCGCTTGTTCAC 59.082 36.000 0.00 0.00 0.00 3.18
251 252 4.717991 TCCATTTTTATCGCTTGTTCACG 58.282 39.130 0.00 0.00 0.00 4.35
252 253 3.300590 CCATTTTTATCGCTTGTTCACGC 59.699 43.478 0.00 0.00 0.00 5.34
253 254 3.889196 TTTTTATCGCTTGTTCACGCT 57.111 38.095 0.36 0.00 0.00 5.07
254 255 3.889196 TTTTATCGCTTGTTCACGCTT 57.111 38.095 0.36 0.00 0.00 4.68
255 256 3.889196 TTTATCGCTTGTTCACGCTTT 57.111 38.095 0.36 0.00 0.00 3.51
256 257 3.889196 TTATCGCTTGTTCACGCTTTT 57.111 38.095 0.36 0.00 0.00 2.27
257 258 2.316119 ATCGCTTGTTCACGCTTTTC 57.684 45.000 0.36 0.00 0.00 2.29
258 259 1.010580 TCGCTTGTTCACGCTTTTCA 58.989 45.000 0.36 0.00 0.00 2.69
259 260 1.398739 TCGCTTGTTCACGCTTTTCAA 59.601 42.857 0.36 0.00 0.00 2.69
260 261 2.159503 TCGCTTGTTCACGCTTTTCAAA 60.160 40.909 0.36 0.00 0.00 2.69
261 262 2.788786 CGCTTGTTCACGCTTTTCAAAT 59.211 40.909 0.36 0.00 0.00 2.32
262 263 3.971871 CGCTTGTTCACGCTTTTCAAATA 59.028 39.130 0.36 0.00 0.00 1.40
263 264 4.616802 CGCTTGTTCACGCTTTTCAAATAT 59.383 37.500 0.36 0.00 0.00 1.28
264 265 5.116983 CGCTTGTTCACGCTTTTCAAATATT 59.883 36.000 0.36 0.00 0.00 1.28
265 266 6.516739 GCTTGTTCACGCTTTTCAAATATTC 58.483 36.000 0.00 0.00 0.00 1.75
266 267 6.399986 GCTTGTTCACGCTTTTCAAATATTCC 60.400 38.462 0.00 0.00 0.00 3.01
267 268 5.465935 TGTTCACGCTTTTCAAATATTCCC 58.534 37.500 0.00 0.00 0.00 3.97
268 269 4.712122 TCACGCTTTTCAAATATTCCCC 57.288 40.909 0.00 0.00 0.00 4.81
269 270 3.445805 TCACGCTTTTCAAATATTCCCCC 59.554 43.478 0.00 0.00 0.00 5.40
290 291 7.675161 CCCCCTTTTAAATTCCTTCACATAT 57.325 36.000 0.00 0.00 0.00 1.78
291 292 8.089625 CCCCCTTTTAAATTCCTTCACATATT 57.910 34.615 0.00 0.00 0.00 1.28
292 293 8.204160 CCCCCTTTTAAATTCCTTCACATATTC 58.796 37.037 0.00 0.00 0.00 1.75
293 294 8.981659 CCCCTTTTAAATTCCTTCACATATTCT 58.018 33.333 0.00 0.00 0.00 2.40
369 370 9.733219 AACCAAGCATTTGAAAAATGTTAAATG 57.267 25.926 12.82 0.00 41.23 2.32
370 371 8.901793 ACCAAGCATTTGAAAAATGTTAAATGT 58.098 25.926 12.82 2.63 40.70 2.71
371 372 9.171701 CCAAGCATTTGAAAAATGTTAAATGTG 57.828 29.630 12.82 3.88 40.70 3.21
372 373 8.683774 CAAGCATTTGAAAAATGTTAAATGTGC 58.316 29.630 12.82 0.00 40.70 4.57
373 374 7.928103 AGCATTTGAAAAATGTTAAATGTGCA 58.072 26.923 12.82 0.00 40.70 4.57
374 375 8.569641 AGCATTTGAAAAATGTTAAATGTGCAT 58.430 25.926 12.82 0.00 40.70 3.96
375 376 9.823098 GCATTTGAAAAATGTTAAATGTGCATA 57.177 25.926 12.82 0.00 40.70 3.14
387 388 9.979578 TGTTAAATGTGCATAGAGAAAATGTTT 57.020 25.926 0.00 0.00 0.00 2.83
390 391 8.976986 AAATGTGCATAGAGAAAATGTTTCTC 57.023 30.769 18.74 18.74 43.89 2.87
402 403 9.872757 GAGAAAATGTTTCTCGTGTATACAAAA 57.127 29.630 7.25 1.69 36.05 2.44
432 433 7.433708 ACAATGTGTATGAAAAAGTCGATCA 57.566 32.000 0.00 0.00 0.00 2.92
433 434 8.044060 ACAATGTGTATGAAAAAGTCGATCAT 57.956 30.769 4.07 4.07 37.54 2.45
434 435 7.964559 ACAATGTGTATGAAAAAGTCGATCATG 59.035 33.333 8.39 0.00 35.53 3.07
435 436 7.615582 ATGTGTATGAAAAAGTCGATCATGT 57.384 32.000 8.39 0.00 35.53 3.21
436 437 8.716646 ATGTGTATGAAAAAGTCGATCATGTA 57.283 30.769 8.39 0.00 35.53 2.29
437 438 8.716646 TGTGTATGAAAAAGTCGATCATGTAT 57.283 30.769 8.39 0.00 35.53 2.29
438 439 9.161629 TGTGTATGAAAAAGTCGATCATGTATT 57.838 29.630 8.39 0.00 35.53 1.89
439 440 9.988350 GTGTATGAAAAAGTCGATCATGTATTT 57.012 29.630 8.39 0.00 35.53 1.40
597 598 9.874205 ATCATGTTTTAGGAAATGGTATTTGTG 57.126 29.630 0.00 0.00 0.00 3.33
598 599 8.865090 TCATGTTTTAGGAAATGGTATTTGTGT 58.135 29.630 0.00 0.00 0.00 3.72
617 618 7.916128 TTGTGTATTAAAAATGTTCGTGGTG 57.084 32.000 0.00 0.00 0.00 4.17
618 619 7.028926 TGTGTATTAAAAATGTTCGTGGTGT 57.971 32.000 0.00 0.00 0.00 4.16
619 620 8.151141 TGTGTATTAAAAATGTTCGTGGTGTA 57.849 30.769 0.00 0.00 0.00 2.90
620 621 8.784994 TGTGTATTAAAAATGTTCGTGGTGTAT 58.215 29.630 0.00 0.00 0.00 2.29
627 628 8.928270 AAAAATGTTCGTGGTGTATACAAAAA 57.072 26.923 7.25 0.00 0.00 1.94
659 660 9.811655 CAGCATATACGTATTGAATAAAAGTGG 57.188 33.333 14.33 0.00 0.00 4.00
660 661 9.555727 AGCATATACGTATTGAATAAAAGTGGT 57.444 29.630 14.33 1.44 0.00 4.16
661 662 9.807386 GCATATACGTATTGAATAAAAGTGGTC 57.193 33.333 14.33 0.00 0.00 4.02
738 739 8.445275 TGTTTATGATGTATACGGAAAATGCT 57.555 30.769 0.00 0.00 0.00 3.79
739 740 9.549078 TGTTTATGATGTATACGGAAAATGCTA 57.451 29.630 0.00 0.00 0.00 3.49
744 745 8.445275 TGATGTATACGGAAAATGCTAAATGT 57.555 30.769 0.00 0.00 0.00 2.71
745 746 8.341903 TGATGTATACGGAAAATGCTAAATGTG 58.658 33.333 0.00 0.00 0.00 3.21
746 747 7.618502 TGTATACGGAAAATGCTAAATGTGT 57.381 32.000 0.00 0.00 0.00 3.72
747 748 8.719560 TGTATACGGAAAATGCTAAATGTGTA 57.280 30.769 0.00 0.00 0.00 2.90
748 749 8.822855 TGTATACGGAAAATGCTAAATGTGTAG 58.177 33.333 0.00 0.00 0.00 2.74
749 750 7.859325 ATACGGAAAATGCTAAATGTGTAGT 57.141 32.000 0.00 0.00 0.00 2.73
750 751 5.938322 ACGGAAAATGCTAAATGTGTAGTG 58.062 37.500 0.00 0.00 0.00 2.74
751 752 5.703592 ACGGAAAATGCTAAATGTGTAGTGA 59.296 36.000 0.00 0.00 0.00 3.41
752 753 6.205853 ACGGAAAATGCTAAATGTGTAGTGAA 59.794 34.615 0.00 0.00 0.00 3.18
753 754 7.081349 CGGAAAATGCTAAATGTGTAGTGAAA 58.919 34.615 0.00 0.00 0.00 2.69
754 755 7.593273 CGGAAAATGCTAAATGTGTAGTGAAAA 59.407 33.333 0.00 0.00 0.00 2.29
755 756 9.423061 GGAAAATGCTAAATGTGTAGTGAAAAT 57.577 29.630 0.00 0.00 0.00 1.82
806 807 7.859325 AAAAGTTGACATGTGTTGTAGTACT 57.141 32.000 1.15 0.00 39.18 2.73
807 808 8.951787 AAAAGTTGACATGTGTTGTAGTACTA 57.048 30.769 1.15 0.00 39.18 1.82
808 809 8.951787 AAAGTTGACATGTGTTGTAGTACTAA 57.048 30.769 1.15 0.00 39.18 2.24
811 812 9.386010 AGTTGACATGTGTTGTAGTACTAAAAA 57.614 29.630 1.15 1.46 39.18 1.94
838 839 6.350103 TGATGTTTATAAACGGGCATCTGTA 58.650 36.000 20.51 2.68 41.74 2.74
842 845 0.906066 TAAACGGGCATCTGTAGGCA 59.094 50.000 0.00 0.00 32.88 4.75
959 962 2.408050 CACTCTTCTCAACCAACCGAG 58.592 52.381 0.00 0.00 0.00 4.63
960 963 1.270358 ACTCTTCTCAACCAACCGAGC 60.270 52.381 0.00 0.00 0.00 5.03
1475 1966 1.354337 CTGGACAACGGCGAGATGTG 61.354 60.000 16.62 5.82 35.91 3.21
1618 2145 0.963962 AACACTGCAGCTGGATTTGG 59.036 50.000 17.12 2.94 0.00 3.28
1741 2283 2.294449 TCTGGATACGCAGAGCCTAT 57.706 50.000 0.00 0.00 42.51 2.57
1759 2301 2.513026 ATCCGTGACAGAGCTGCCAC 62.513 60.000 6.84 6.84 39.99 5.01
1760 2302 2.740055 CGTGACAGAGCTGCCACC 60.740 66.667 10.63 0.00 40.22 4.61
1761 2303 2.427320 GTGACAGAGCTGCCACCA 59.573 61.111 5.74 0.00 37.89 4.17
1762 2304 1.963338 GTGACAGAGCTGCCACCAC 60.963 63.158 5.74 2.44 37.89 4.16
1763 2305 2.427320 GACAGAGCTGCCACCACA 59.573 61.111 0.00 0.00 0.00 4.17
1764 2306 1.963338 GACAGAGCTGCCACCACAC 60.963 63.158 0.00 0.00 0.00 3.82
1923 2487 5.030147 AGTGTTTGATACCTCTGGGATACA 58.970 41.667 0.00 0.00 39.74 2.29
2757 3674 1.229082 ACCACACCTAGAAGCCGGA 60.229 57.895 5.05 0.00 0.00 5.14
2793 3710 3.249320 GGATTATTAAACCGGGCGAAGAC 59.751 47.826 6.32 0.00 0.00 3.01
2847 3767 0.032678 ACGCGCAGATATGGAAGAGG 59.967 55.000 5.73 0.00 0.00 3.69
2954 3877 3.203487 TCCCTCACTTTAGTTGGGTTTGT 59.797 43.478 13.99 0.00 39.13 2.83
3011 3934 3.258372 TCTGGCGTCTTCATGGTATATCC 59.742 47.826 0.00 0.00 0.00 2.59
3016 3939 3.617531 CGTCTTCATGGTATATCCCCAGC 60.618 52.174 0.00 0.00 34.92 4.85
3285 5985 4.879545 GGTCACTGTTCTTTTCTGTTGGTA 59.120 41.667 0.00 0.00 0.00 3.25
3286 5986 5.355910 GGTCACTGTTCTTTTCTGTTGGTAA 59.644 40.000 0.00 0.00 0.00 2.85
3287 5987 6.127842 GGTCACTGTTCTTTTCTGTTGGTAAA 60.128 38.462 0.00 0.00 0.00 2.01
3288 5988 7.309920 GTCACTGTTCTTTTCTGTTGGTAAAA 58.690 34.615 0.00 0.00 0.00 1.52
3289 5989 7.973944 GTCACTGTTCTTTTCTGTTGGTAAAAT 59.026 33.333 0.00 0.00 0.00 1.82
3290 5990 7.973388 TCACTGTTCTTTTCTGTTGGTAAAATG 59.027 33.333 0.00 0.00 0.00 2.32
3291 5991 6.756542 ACTGTTCTTTTCTGTTGGTAAAATGC 59.243 34.615 0.00 0.00 0.00 3.56
3292 5992 6.634805 TGTTCTTTTCTGTTGGTAAAATGCA 58.365 32.000 0.00 0.00 0.00 3.96
3293 5993 7.271511 TGTTCTTTTCTGTTGGTAAAATGCAT 58.728 30.769 0.00 0.00 0.00 3.96
3294 5994 8.417106 TGTTCTTTTCTGTTGGTAAAATGCATA 58.583 29.630 0.00 0.00 0.00 3.14
3295 5995 9.255304 GTTCTTTTCTGTTGGTAAAATGCATAA 57.745 29.630 0.00 0.00 0.00 1.90
3296 5996 9.823647 TTCTTTTCTGTTGGTAAAATGCATAAA 57.176 25.926 0.00 0.00 0.00 1.40
3297 5997 9.995003 TCTTTTCTGTTGGTAAAATGCATAAAT 57.005 25.926 0.00 0.00 0.00 1.40
3300 6000 9.553064 TTTCTGTTGGTAAAATGCATAAATTGT 57.447 25.926 0.00 0.00 0.00 2.71
3301 6001 9.553064 TTCTGTTGGTAAAATGCATAAATTGTT 57.447 25.926 0.00 0.00 0.00 2.83
3302 6002 9.553064 TCTGTTGGTAAAATGCATAAATTGTTT 57.447 25.926 0.00 0.00 0.00 2.83
3333 6041 4.263462 TGGTCTTGTGTGCCTATCTGAAAT 60.263 41.667 0.00 0.00 0.00 2.17
3334 6042 5.045942 TGGTCTTGTGTGCCTATCTGAAATA 60.046 40.000 0.00 0.00 0.00 1.40
3441 6154 8.478066 TGTGATTAGCTAGTTCAGATGTACAAT 58.522 33.333 0.00 0.00 0.00 2.71
3462 6175 6.838612 ACAATTGGGAAGCAAATAATAGGCTA 59.161 34.615 10.83 0.00 36.76 3.93
3621 6601 1.816835 CAGTACTGGACCGCAGTTCTA 59.183 52.381 15.49 0.00 34.38 2.10
3622 6602 1.817447 AGTACTGGACCGCAGTTCTAC 59.183 52.381 0.00 0.00 34.38 2.59
3623 6603 1.542915 GTACTGGACCGCAGTTCTACA 59.457 52.381 0.00 0.00 34.38 2.74
3624 6604 0.317479 ACTGGACCGCAGTTCTACAC 59.683 55.000 0.00 0.00 0.00 2.90
3633 6637 4.219070 ACCGCAGTTCTACACATAACAGTA 59.781 41.667 0.00 0.00 0.00 2.74
3634 6638 5.105473 ACCGCAGTTCTACACATAACAGTAT 60.105 40.000 0.00 0.00 0.00 2.12
3701 6759 3.904136 ACACTCTTTCAATTGGAAGCG 57.096 42.857 20.09 16.89 36.72 4.68
3767 6825 4.953940 ATATCTTCCTGAAGTGAGGAGC 57.046 45.455 6.78 0.00 43.26 4.70
3811 6870 9.520204 CCAGCGAATAAATAATTTTCTTCATGT 57.480 29.630 0.00 0.00 31.03 3.21
3847 6907 7.946655 TTTCTCCGATTACATAACTATGCAG 57.053 36.000 0.00 0.00 37.19 4.41
3865 6925 2.232452 GCAGCTCTCAGTTCACCTAGAA 59.768 50.000 0.00 0.00 0.00 2.10
3875 6940 5.783360 TCAGTTCACCTAGAAGATAACCCAA 59.217 40.000 0.00 0.00 36.78 4.12
3915 6980 8.906867 TCTATCAACATTTTCCCATCAGAATTC 58.093 33.333 0.00 0.00 0.00 2.17
3921 6986 5.627499 TTTTCCCATCAGAATTCTCGTTG 57.373 39.130 4.57 6.93 0.00 4.10
3935 7001 0.107831 TCGTTGGGTTCCTGACTTGG 59.892 55.000 0.00 0.00 0.00 3.61
3946 7018 3.296854 TCCTGACTTGGTATGCTCGTAT 58.703 45.455 0.00 0.00 0.00 3.06
3962 7034 4.201910 GCTCGTATGTATTGGCATTGTTGT 60.202 41.667 0.00 0.00 0.00 3.32
3975 7047 2.151502 TTGTTGTTGGACATGGTGGT 57.848 45.000 0.00 0.00 0.00 4.16
4008 7080 3.947196 TGGACAATATGTGAGATGGTTGC 59.053 43.478 0.00 0.00 0.00 4.17
4058 7131 4.065088 TGACTGAAAAGGTGATGTAGCAC 58.935 43.478 0.00 0.00 38.05 4.40
4137 7216 4.681244 GCTGCATGGGCTTTAATTGATGAA 60.681 41.667 0.00 0.00 41.91 2.57
4256 7341 3.320129 ACCCTAACCAGTACAGTTTCCA 58.680 45.455 6.62 0.00 0.00 3.53
4343 7438 8.725405 TTATATGCGGTCAATTTCTCAACTTA 57.275 30.769 0.00 0.00 0.00 2.24
4347 7442 7.072177 TGCGGTCAATTTCTCAACTTAATAG 57.928 36.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.806654 TCTGAAGCTTTTGGGCTATTTTT 57.193 34.783 0.00 0.00 42.24 1.94
22 23 5.070313 TGTTCTGAAGCTTTTGGGCTATTTT 59.930 36.000 0.00 0.00 42.24 1.82
23 24 4.588528 TGTTCTGAAGCTTTTGGGCTATTT 59.411 37.500 0.00 0.00 42.24 1.40
24 25 4.151883 TGTTCTGAAGCTTTTGGGCTATT 58.848 39.130 0.00 0.00 42.24 1.73
25 26 3.760684 CTGTTCTGAAGCTTTTGGGCTAT 59.239 43.478 0.00 0.00 42.24 2.97
26 27 3.149196 CTGTTCTGAAGCTTTTGGGCTA 58.851 45.455 0.00 0.00 42.24 3.93
27 28 1.959282 CTGTTCTGAAGCTTTTGGGCT 59.041 47.619 0.00 0.00 45.30 5.19
28 29 1.603931 GCTGTTCTGAAGCTTTTGGGC 60.604 52.381 0.00 0.00 37.69 5.36
29 30 2.428888 GCTGTTCTGAAGCTTTTGGG 57.571 50.000 0.00 0.00 37.69 4.12
59 60 2.597510 AGACACGGGCTTTTGGGC 60.598 61.111 0.00 0.00 40.05 5.36
60 61 0.609131 ATGAGACACGGGCTTTTGGG 60.609 55.000 0.00 0.00 0.00 4.12
61 62 2.107950 TATGAGACACGGGCTTTTGG 57.892 50.000 0.00 0.00 0.00 3.28
62 63 3.242413 CGATTATGAGACACGGGCTTTTG 60.242 47.826 0.00 0.00 0.00 2.44
63 64 2.936498 CGATTATGAGACACGGGCTTTT 59.064 45.455 0.00 0.00 0.00 2.27
64 65 2.167693 TCGATTATGAGACACGGGCTTT 59.832 45.455 0.00 0.00 0.00 3.51
65 66 1.754803 TCGATTATGAGACACGGGCTT 59.245 47.619 0.00 0.00 0.00 4.35
66 67 1.399714 TCGATTATGAGACACGGGCT 58.600 50.000 0.00 0.00 0.00 5.19
67 68 2.440539 ATCGATTATGAGACACGGGC 57.559 50.000 0.00 0.00 0.00 6.13
68 69 6.128553 CCATTTTATCGATTATGAGACACGGG 60.129 42.308 1.71 0.00 0.00 5.28
69 70 6.128553 CCCATTTTATCGATTATGAGACACGG 60.129 42.308 1.71 0.00 0.00 4.94
70 71 6.618592 GCCCATTTTATCGATTATGAGACACG 60.619 42.308 1.71 0.00 0.00 4.49
71 72 6.348540 GGCCCATTTTATCGATTATGAGACAC 60.349 42.308 1.71 0.00 0.00 3.67
72 73 5.705441 GGCCCATTTTATCGATTATGAGACA 59.295 40.000 1.71 0.00 0.00 3.41
73 74 5.705441 TGGCCCATTTTATCGATTATGAGAC 59.295 40.000 1.71 0.00 0.00 3.36
74 75 5.705441 GTGGCCCATTTTATCGATTATGAGA 59.295 40.000 1.71 0.00 0.00 3.27
75 76 5.390885 CGTGGCCCATTTTATCGATTATGAG 60.391 44.000 1.71 0.00 0.00 2.90
76 77 4.454161 CGTGGCCCATTTTATCGATTATGA 59.546 41.667 1.71 0.00 0.00 2.15
77 78 4.454161 TCGTGGCCCATTTTATCGATTATG 59.546 41.667 1.71 5.61 0.00 1.90
78 79 4.647611 TCGTGGCCCATTTTATCGATTAT 58.352 39.130 1.71 0.00 0.00 1.28
79 80 4.062293 CTCGTGGCCCATTTTATCGATTA 58.938 43.478 1.71 0.00 0.00 1.75
80 81 2.878406 CTCGTGGCCCATTTTATCGATT 59.122 45.455 1.71 0.00 0.00 3.34
81 82 2.494059 CTCGTGGCCCATTTTATCGAT 58.506 47.619 2.16 2.16 0.00 3.59
82 83 1.948104 CTCGTGGCCCATTTTATCGA 58.052 50.000 0.00 0.00 0.00 3.59
83 84 0.307760 GCTCGTGGCCCATTTTATCG 59.692 55.000 0.00 0.00 34.27 2.92
95 96 4.856801 CATTCCCGGGGCTCGTGG 62.857 72.222 23.50 7.02 37.11 4.94
98 99 2.883828 ATAGCATTCCCGGGGCTCG 61.884 63.158 24.00 10.49 39.01 5.03
99 100 1.302832 CATAGCATTCCCGGGGCTC 60.303 63.158 24.00 10.03 39.01 4.70
100 101 2.056906 GACATAGCATTCCCGGGGCT 62.057 60.000 23.81 23.81 41.51 5.19
101 102 1.600916 GACATAGCATTCCCGGGGC 60.601 63.158 23.50 17.10 0.00 5.80
102 103 0.035458 GAGACATAGCATTCCCGGGG 59.965 60.000 23.50 6.77 0.00 5.73
103 104 0.758734 TGAGACATAGCATTCCCGGG 59.241 55.000 16.85 16.85 0.00 5.73
104 105 1.414181 AGTGAGACATAGCATTCCCGG 59.586 52.381 0.00 0.00 0.00 5.73
105 106 2.898729 AGTGAGACATAGCATTCCCG 57.101 50.000 0.00 0.00 0.00 5.14
106 107 6.998802 ACTATAAGTGAGACATAGCATTCCC 58.001 40.000 0.00 0.00 0.00 3.97
127 128 9.004717 GCTATGTCTCACTTATATGTCTCACTA 57.995 37.037 0.00 0.00 0.00 2.74
128 129 7.503902 TGCTATGTCTCACTTATATGTCTCACT 59.496 37.037 0.00 0.00 0.00 3.41
129 130 7.652727 TGCTATGTCTCACTTATATGTCTCAC 58.347 38.462 0.00 0.00 0.00 3.51
130 131 7.823745 TGCTATGTCTCACTTATATGTCTCA 57.176 36.000 0.00 0.00 0.00 3.27
131 132 7.275341 GCATGCTATGTCTCACTTATATGTCTC 59.725 40.741 11.37 0.00 0.00 3.36
132 133 7.095910 GCATGCTATGTCTCACTTATATGTCT 58.904 38.462 11.37 0.00 0.00 3.41
133 134 6.870439 TGCATGCTATGTCTCACTTATATGTC 59.130 38.462 20.33 0.00 0.00 3.06
134 135 6.648310 GTGCATGCTATGTCTCACTTATATGT 59.352 38.462 20.33 0.00 0.00 2.29
135 136 6.872547 AGTGCATGCTATGTCTCACTTATATG 59.127 38.462 20.33 0.00 30.36 1.78
136 137 7.002250 AGTGCATGCTATGTCTCACTTATAT 57.998 36.000 20.33 0.00 30.36 0.86
137 138 6.410942 AGTGCATGCTATGTCTCACTTATA 57.589 37.500 20.33 0.00 30.36 0.98
138 139 5.287674 AGTGCATGCTATGTCTCACTTAT 57.712 39.130 20.33 0.00 30.36 1.73
139 140 4.686972 GAGTGCATGCTATGTCTCACTTA 58.313 43.478 20.33 0.00 33.31 2.24
140 141 3.529533 GAGTGCATGCTATGTCTCACTT 58.470 45.455 20.33 0.00 33.31 3.16
141 142 2.480932 CGAGTGCATGCTATGTCTCACT 60.481 50.000 20.33 11.03 35.01 3.41
142 143 1.857217 CGAGTGCATGCTATGTCTCAC 59.143 52.381 20.33 5.81 35.11 3.51
143 144 1.803998 GCGAGTGCATGCTATGTCTCA 60.804 52.381 20.33 0.00 42.15 3.27
144 145 0.857935 GCGAGTGCATGCTATGTCTC 59.142 55.000 20.33 15.75 42.15 3.36
145 146 0.873312 CGCGAGTGCATGCTATGTCT 60.873 55.000 20.33 9.16 42.97 3.41
146 147 1.148157 ACGCGAGTGCATGCTATGTC 61.148 55.000 20.33 8.94 46.97 3.06
147 148 1.153568 ACGCGAGTGCATGCTATGT 60.154 52.632 20.33 6.03 46.97 2.29
148 149 3.710044 ACGCGAGTGCATGCTATG 58.290 55.556 20.33 7.31 46.97 2.23
159 160 2.811317 GAAGGCACCTGACGCGAG 60.811 66.667 15.93 0.00 0.00 5.03
160 161 4.373116 GGAAGGCACCTGACGCGA 62.373 66.667 15.93 0.00 0.00 5.87
161 162 2.501223 TTAGGAAGGCACCTGACGCG 62.501 60.000 3.53 3.53 40.81 6.01
162 163 0.321298 TTTAGGAAGGCACCTGACGC 60.321 55.000 12.39 0.00 40.81 5.19
163 164 2.403252 ATTTAGGAAGGCACCTGACG 57.597 50.000 12.39 0.00 40.81 4.35
164 165 2.755103 CCAATTTAGGAAGGCACCTGAC 59.245 50.000 12.39 0.00 40.81 3.51
165 166 2.378547 ACCAATTTAGGAAGGCACCTGA 59.621 45.455 12.39 2.81 40.81 3.86
166 167 2.807676 ACCAATTTAGGAAGGCACCTG 58.192 47.619 12.39 0.00 40.81 4.00
167 168 3.165071 CAACCAATTTAGGAAGGCACCT 58.835 45.455 8.23 8.23 43.32 4.00
168 169 2.233676 CCAACCAATTTAGGAAGGCACC 59.766 50.000 0.00 0.00 0.00 5.01
169 170 2.353704 GCCAACCAATTTAGGAAGGCAC 60.354 50.000 13.48 0.00 45.13 5.01
170 171 1.899142 GCCAACCAATTTAGGAAGGCA 59.101 47.619 13.48 0.00 45.13 4.75
171 172 1.207089 GGCCAACCAATTTAGGAAGGC 59.793 52.381 0.00 11.28 45.09 4.35
172 173 1.831106 GGGCCAACCAATTTAGGAAGG 59.169 52.381 4.39 0.00 39.85 3.46
193 194 3.264897 CGATTTAGGCAGCGCGCT 61.265 61.111 31.32 31.32 41.91 5.92
194 195 2.686518 CTTCGATTTAGGCAGCGCGC 62.687 60.000 26.66 26.66 41.28 6.86
195 196 1.273887 CTTCGATTTAGGCAGCGCG 59.726 57.895 0.00 0.00 0.00 6.86
196 197 1.643832 CCTTCGATTTAGGCAGCGC 59.356 57.895 0.00 0.00 0.00 5.92
202 203 1.401905 GCTTGTGGCCTTCGATTTAGG 59.598 52.381 3.32 0.00 35.80 2.69
203 204 2.832672 GCTTGTGGCCTTCGATTTAG 57.167 50.000 3.32 0.00 34.27 1.85
214 215 1.827789 TGGAACAGTGGCTTGTGGC 60.828 57.895 0.00 0.00 40.90 5.01
215 216 4.577152 TGGAACAGTGGCTTGTGG 57.423 55.556 0.00 0.00 0.00 4.17
227 228 5.059221 CGTGAACAAGCGATAAAAATGGAAC 59.941 40.000 0.00 0.00 0.00 3.62
228 229 5.150683 CGTGAACAAGCGATAAAAATGGAA 58.849 37.500 0.00 0.00 0.00 3.53
229 230 4.717991 CGTGAACAAGCGATAAAAATGGA 58.282 39.130 0.00 0.00 0.00 3.41
230 231 3.300590 GCGTGAACAAGCGATAAAAATGG 59.699 43.478 0.00 0.00 0.00 3.16
231 232 4.158384 AGCGTGAACAAGCGATAAAAATG 58.842 39.130 7.02 0.00 40.72 2.32
232 233 4.419522 AGCGTGAACAAGCGATAAAAAT 57.580 36.364 7.02 0.00 40.72 1.82
233 234 3.889196 AGCGTGAACAAGCGATAAAAA 57.111 38.095 7.02 0.00 40.72 1.94
234 235 3.889196 AAGCGTGAACAAGCGATAAAA 57.111 38.095 7.02 0.00 40.72 1.52
235 236 3.889196 AAAGCGTGAACAAGCGATAAA 57.111 38.095 7.02 0.00 40.72 1.40
236 237 3.248841 TGAAAAGCGTGAACAAGCGATAA 59.751 39.130 7.02 0.00 40.72 1.75
237 238 2.803386 TGAAAAGCGTGAACAAGCGATA 59.197 40.909 7.02 0.00 40.72 2.92
238 239 1.601903 TGAAAAGCGTGAACAAGCGAT 59.398 42.857 7.02 0.00 40.72 4.58
239 240 1.010580 TGAAAAGCGTGAACAAGCGA 58.989 45.000 7.02 0.00 40.72 4.93
240 241 1.821336 TTGAAAAGCGTGAACAAGCG 58.179 45.000 7.02 0.00 40.72 4.68
241 242 6.399986 GGAATATTTGAAAAGCGTGAACAAGC 60.400 38.462 4.72 4.72 36.04 4.01
242 243 6.089417 GGGAATATTTGAAAAGCGTGAACAAG 59.911 38.462 0.00 0.00 0.00 3.16
243 244 5.923684 GGGAATATTTGAAAAGCGTGAACAA 59.076 36.000 0.00 0.00 0.00 2.83
244 245 5.465935 GGGAATATTTGAAAAGCGTGAACA 58.534 37.500 0.00 0.00 0.00 3.18
245 246 4.862574 GGGGAATATTTGAAAAGCGTGAAC 59.137 41.667 0.00 0.00 0.00 3.18
246 247 4.081917 GGGGGAATATTTGAAAAGCGTGAA 60.082 41.667 0.00 0.00 0.00 3.18
247 248 3.445805 GGGGGAATATTTGAAAAGCGTGA 59.554 43.478 0.00 0.00 0.00 4.35
248 249 3.780902 GGGGGAATATTTGAAAAGCGTG 58.219 45.455 0.00 0.00 0.00 5.34
266 267 7.675161 ATATGTGAAGGAATTTAAAAGGGGG 57.325 36.000 0.00 0.00 0.00 5.40
267 268 8.981659 AGAATATGTGAAGGAATTTAAAAGGGG 58.018 33.333 0.00 0.00 0.00 4.79
343 344 9.733219 CATTTAACATTTTTCAAATGCTTGGTT 57.267 25.926 8.77 0.00 33.18 3.67
344 345 8.901793 ACATTTAACATTTTTCAAATGCTTGGT 58.098 25.926 8.77 0.00 40.43 3.67
345 346 9.171701 CACATTTAACATTTTTCAAATGCTTGG 57.828 29.630 8.77 0.00 40.43 3.61
346 347 8.683774 GCACATTTAACATTTTTCAAATGCTTG 58.316 29.630 8.77 3.67 40.43 4.01
347 348 8.404000 TGCACATTTAACATTTTTCAAATGCTT 58.596 25.926 8.77 5.95 40.43 3.91
348 349 7.928103 TGCACATTTAACATTTTTCAAATGCT 58.072 26.923 8.77 0.59 40.43 3.79
349 350 8.730970 ATGCACATTTAACATTTTTCAAATGC 57.269 26.923 8.77 0.00 40.43 3.56
361 362 9.979578 AAACATTTTCTCTATGCACATTTAACA 57.020 25.926 0.00 0.00 0.00 2.41
365 366 7.752239 CGAGAAACATTTTCTCTATGCACATTT 59.248 33.333 20.83 0.00 41.98 2.32
366 367 7.094634 ACGAGAAACATTTTCTCTATGCACATT 60.095 33.333 20.83 0.00 41.98 2.71
367 368 6.372659 ACGAGAAACATTTTCTCTATGCACAT 59.627 34.615 20.83 0.00 41.98 3.21
368 369 5.700832 ACGAGAAACATTTTCTCTATGCACA 59.299 36.000 20.83 0.00 41.98 4.57
369 370 6.017933 CACGAGAAACATTTTCTCTATGCAC 58.982 40.000 20.83 0.89 41.98 4.57
370 371 5.700832 ACACGAGAAACATTTTCTCTATGCA 59.299 36.000 20.83 0.00 41.98 3.96
371 372 6.170675 ACACGAGAAACATTTTCTCTATGC 57.829 37.500 20.83 2.03 41.98 3.14
374 375 9.917129 TTGTATACACGAGAAACATTTTCTCTA 57.083 29.630 20.83 10.94 41.98 2.43
375 376 8.827177 TTGTATACACGAGAAACATTTTCTCT 57.173 30.769 20.83 9.47 41.98 3.10
376 377 9.872757 TTTTGTATACACGAGAAACATTTTCTC 57.127 29.630 15.73 15.73 41.03 2.87
406 407 9.161629 TGATCGACTTTTTCATACACATTGTAT 57.838 29.630 0.00 0.00 43.81 2.29
407 408 8.541133 TGATCGACTTTTTCATACACATTGTA 57.459 30.769 0.00 0.00 37.24 2.41
408 409 7.433708 TGATCGACTTTTTCATACACATTGT 57.566 32.000 0.00 0.00 0.00 2.71
409 410 7.964559 ACATGATCGACTTTTTCATACACATTG 59.035 33.333 0.00 0.00 0.00 2.82
410 411 8.044060 ACATGATCGACTTTTTCATACACATT 57.956 30.769 0.00 0.00 0.00 2.71
411 412 7.615582 ACATGATCGACTTTTTCATACACAT 57.384 32.000 0.00 0.00 0.00 3.21
412 413 8.716646 ATACATGATCGACTTTTTCATACACA 57.283 30.769 0.00 0.00 0.00 3.72
413 414 9.988350 AAATACATGATCGACTTTTTCATACAC 57.012 29.630 0.00 0.00 0.00 2.90
571 572 9.874205 CACAAATACCATTTCCTAAAACATGAT 57.126 29.630 0.00 0.00 0.00 2.45
572 573 8.865090 ACACAAATACCATTTCCTAAAACATGA 58.135 29.630 0.00 0.00 0.00 3.07
591 592 8.973378 CACCACGAACATTTTTAATACACAAAT 58.027 29.630 0.00 0.00 0.00 2.32
592 593 7.974501 ACACCACGAACATTTTTAATACACAAA 59.025 29.630 0.00 0.00 0.00 2.83
593 594 7.481642 ACACCACGAACATTTTTAATACACAA 58.518 30.769 0.00 0.00 0.00 3.33
594 595 7.028926 ACACCACGAACATTTTTAATACACA 57.971 32.000 0.00 0.00 0.00 3.72
602 603 8.928270 TTTTTGTATACACCACGAACATTTTT 57.072 26.923 4.68 0.00 0.00 1.94
633 634 9.811655 CCACTTTTATTCAATACGTATATGCTG 57.188 33.333 8.83 3.53 0.00 4.41
634 635 9.555727 ACCACTTTTATTCAATACGTATATGCT 57.444 29.630 8.83 0.00 0.00 3.79
635 636 9.807386 GACCACTTTTATTCAATACGTATATGC 57.193 33.333 8.83 0.00 0.00 3.14
712 713 9.066892 AGCATTTTCCGTATACATCATAAACAT 57.933 29.630 3.32 0.00 0.00 2.71
713 714 8.445275 AGCATTTTCCGTATACATCATAAACA 57.555 30.769 3.32 0.00 0.00 2.83
718 719 9.066892 ACATTTAGCATTTTCCGTATACATCAT 57.933 29.630 3.32 0.00 0.00 2.45
719 720 8.341903 CACATTTAGCATTTTCCGTATACATCA 58.658 33.333 3.32 0.00 0.00 3.07
720 721 8.342634 ACACATTTAGCATTTTCCGTATACATC 58.657 33.333 3.32 0.00 0.00 3.06
721 722 8.220755 ACACATTTAGCATTTTCCGTATACAT 57.779 30.769 3.32 0.00 0.00 2.29
722 723 7.618502 ACACATTTAGCATTTTCCGTATACA 57.381 32.000 3.32 0.00 0.00 2.29
723 724 8.823818 ACTACACATTTAGCATTTTCCGTATAC 58.176 33.333 0.00 0.00 0.00 1.47
724 725 8.822855 CACTACACATTTAGCATTTTCCGTATA 58.177 33.333 0.00 0.00 0.00 1.47
725 726 7.551262 TCACTACACATTTAGCATTTTCCGTAT 59.449 33.333 0.00 0.00 0.00 3.06
726 727 6.874664 TCACTACACATTTAGCATTTTCCGTA 59.125 34.615 0.00 0.00 0.00 4.02
727 728 5.703592 TCACTACACATTTAGCATTTTCCGT 59.296 36.000 0.00 0.00 0.00 4.69
728 729 6.176975 TCACTACACATTTAGCATTTTCCG 57.823 37.500 0.00 0.00 0.00 4.30
729 730 8.810652 TTTTCACTACACATTTAGCATTTTCC 57.189 30.769 0.00 0.00 0.00 3.13
781 782 8.276252 AGTACTACAACACATGTCAACTTTTT 57.724 30.769 0.00 0.00 42.70 1.94
782 783 7.859325 AGTACTACAACACATGTCAACTTTT 57.141 32.000 0.00 0.00 42.70 2.27
783 784 8.951787 TTAGTACTACAACACATGTCAACTTT 57.048 30.769 0.91 0.00 42.70 2.66
784 785 8.951787 TTTAGTACTACAACACATGTCAACTT 57.048 30.769 0.91 0.00 42.70 2.66
785 786 8.951787 TTTTAGTACTACAACACATGTCAACT 57.048 30.769 0.91 0.00 42.70 3.16
786 787 9.646336 CTTTTTAGTACTACAACACATGTCAAC 57.354 33.333 0.91 0.00 42.70 3.18
787 788 9.386010 ACTTTTTAGTACTACAACACATGTCAA 57.614 29.630 0.91 0.00 42.70 3.18
788 789 8.951787 ACTTTTTAGTACTACAACACATGTCA 57.048 30.769 0.91 0.00 42.70 3.58
789 790 9.646336 CAACTTTTTAGTACTACAACACATGTC 57.354 33.333 0.91 0.00 42.70 3.06
790 791 9.386010 TCAACTTTTTAGTACTACAACACATGT 57.614 29.630 0.91 0.00 46.36 3.21
793 794 9.386010 ACATCAACTTTTTAGTACTACAACACA 57.614 29.630 0.91 0.00 0.00 3.72
804 805 9.902196 CCCGTTTATAAACATCAACTTTTTAGT 57.098 29.630 24.27 0.00 38.81 2.24
805 806 8.856247 GCCCGTTTATAAACATCAACTTTTTAG 58.144 33.333 24.27 6.61 38.81 1.85
806 807 8.358148 TGCCCGTTTATAAACATCAACTTTTTA 58.642 29.630 24.27 0.00 38.81 1.52
807 808 7.210873 TGCCCGTTTATAAACATCAACTTTTT 58.789 30.769 24.27 0.00 38.81 1.94
808 809 6.750148 TGCCCGTTTATAAACATCAACTTTT 58.250 32.000 24.27 0.00 38.81 2.27
811 812 5.885912 AGATGCCCGTTTATAAACATCAACT 59.114 36.000 24.27 18.08 38.81 3.16
885 888 1.302832 CTGGGTGGAACAGACCTGC 60.303 63.158 0.00 0.00 41.80 4.85
959 962 1.372087 CCTCTCAGTGGGCGATTTGC 61.372 60.000 0.00 0.00 45.38 3.68
960 963 0.250234 TCCTCTCAGTGGGCGATTTG 59.750 55.000 0.00 0.00 0.00 2.32
1310 1801 1.229951 TGGGGAGGCATGGAGAAGT 60.230 57.895 0.00 0.00 0.00 3.01
1475 1966 3.585990 CCGCCCCGTTGATGATGC 61.586 66.667 0.00 0.00 0.00 3.91
1675 2205 2.238942 TGGTCATGATGCACCGTATC 57.761 50.000 0.00 0.00 35.15 2.24
1741 2283 2.917227 TGGCAGCTCTGTCACGGA 60.917 61.111 0.00 0.00 40.71 4.69
1923 2487 1.006639 AGGGGTTGCCGTATCCAAAAT 59.993 47.619 0.00 0.00 0.00 1.82
2739 3656 0.617820 ATCCGGCTTCTAGGTGTGGT 60.618 55.000 0.00 0.00 0.00 4.16
2793 3710 2.361610 ATGAAGCCAAGGCCACCG 60.362 61.111 5.01 0.00 43.17 4.94
2847 3767 4.747810 CCAAACCATTACAATCAGGCTTC 58.252 43.478 0.00 0.00 0.00 3.86
2954 3877 3.300388 AGGATTGCATTACTCTCCTCGA 58.700 45.455 0.00 0.00 30.45 4.04
3011 3934 3.085952 TCTTAAACTCCATTGGCTGGG 57.914 47.619 0.00 0.00 45.98 4.45
3211 5564 6.938507 TCATCAAGCAGCAAAAGGATAAAAT 58.061 32.000 0.00 0.00 0.00 1.82
3216 5573 5.187186 AGAATTCATCAAGCAGCAAAAGGAT 59.813 36.000 8.44 0.00 0.00 3.24
3286 5986 9.680315 CCACATTTGAAAACAATTTATGCATTT 57.320 25.926 3.54 0.00 0.00 2.32
3287 5987 8.848182 ACCACATTTGAAAACAATTTATGCATT 58.152 25.926 3.54 0.00 0.00 3.56
3288 5988 8.393671 ACCACATTTGAAAACAATTTATGCAT 57.606 26.923 3.79 3.79 0.00 3.96
3289 5989 7.714377 AGACCACATTTGAAAACAATTTATGCA 59.286 29.630 0.00 0.00 0.00 3.96
3290 5990 8.086851 AGACCACATTTGAAAACAATTTATGC 57.913 30.769 0.00 0.00 0.00 3.14
3291 5991 9.866936 CAAGACCACATTTGAAAACAATTTATG 57.133 29.630 0.00 0.00 0.00 1.90
3292 5992 9.612066 ACAAGACCACATTTGAAAACAATTTAT 57.388 25.926 0.00 0.00 0.00 1.40
3293 5993 8.877779 CACAAGACCACATTTGAAAACAATTTA 58.122 29.630 0.00 0.00 0.00 1.40
3294 5994 7.390162 ACACAAGACCACATTTGAAAACAATTT 59.610 29.630 0.00 0.00 0.00 1.82
3295 5995 6.878389 ACACAAGACCACATTTGAAAACAATT 59.122 30.769 0.00 0.00 0.00 2.32
3296 5996 6.313411 CACACAAGACCACATTTGAAAACAAT 59.687 34.615 0.00 0.00 0.00 2.71
3297 5997 5.636965 CACACAAGACCACATTTGAAAACAA 59.363 36.000 0.00 0.00 0.00 2.83
3298 5998 5.167121 CACACAAGACCACATTTGAAAACA 58.833 37.500 0.00 0.00 0.00 2.83
3299 5999 4.032786 GCACACAAGACCACATTTGAAAAC 59.967 41.667 0.00 0.00 0.00 2.43
3300 6000 4.180057 GCACACAAGACCACATTTGAAAA 58.820 39.130 0.00 0.00 0.00 2.29
3301 6001 3.430098 GGCACACAAGACCACATTTGAAA 60.430 43.478 0.00 0.00 0.00 2.69
3302 6002 2.100584 GGCACACAAGACCACATTTGAA 59.899 45.455 0.00 0.00 0.00 2.69
3303 6003 1.680735 GGCACACAAGACCACATTTGA 59.319 47.619 0.00 0.00 0.00 2.69
3311 6011 3.334583 TTCAGATAGGCACACAAGACC 57.665 47.619 0.00 0.00 0.00 3.85
3441 6154 6.097696 GGTTTAGCCTATTATTTGCTTCCCAA 59.902 38.462 0.00 0.00 36.57 4.12
3462 6175 8.706322 AACCTGACAAGAAACATAATAGGTTT 57.294 30.769 2.48 2.48 41.73 3.27
3633 6637 6.549736 GTGCCAATGGAGTTACCCTTTTATAT 59.450 38.462 2.05 0.00 38.00 0.86
3634 6638 5.889289 GTGCCAATGGAGTTACCCTTTTATA 59.111 40.000 2.05 0.00 38.00 0.98
3736 6794 9.300681 TCACTTCAGGAAGATATTCAACAAAAT 57.699 29.630 15.51 0.00 40.79 1.82
3811 6870 9.613428 ATGTAATCGGAGAAAATTAACATGAGA 57.387 29.630 0.00 0.00 43.58 3.27
3821 6881 8.902540 TGCATAGTTATGTAATCGGAGAAAAT 57.097 30.769 1.49 0.00 36.57 1.82
3847 6907 6.270064 GTTATCTTCTAGGTGAACTGAGAGC 58.730 44.000 0.00 0.00 0.00 4.09
3883 6948 7.554118 TGATGGGAAAATGTTGATAGAAGAGAC 59.446 37.037 0.00 0.00 0.00 3.36
3903 6968 2.292267 CCCAACGAGAATTCTGATGGG 58.708 52.381 24.86 24.86 0.00 4.00
3915 6980 1.512926 CAAGTCAGGAACCCAACGAG 58.487 55.000 0.00 0.00 0.00 4.18
3921 6986 1.282157 AGCATACCAAGTCAGGAACCC 59.718 52.381 0.00 0.00 0.00 4.11
3935 7001 5.179368 ACAATGCCAATACATACGAGCATAC 59.821 40.000 0.00 0.00 39.89 2.39
3946 7018 3.638627 TGTCCAACAACAATGCCAATACA 59.361 39.130 0.00 0.00 0.00 2.29
3962 7034 0.553333 TTCACCACCACCATGTCCAA 59.447 50.000 0.00 0.00 0.00 3.53
3975 7047 4.518590 CACATATTGTCCAACACTTCACCA 59.481 41.667 0.00 0.00 0.00 4.17
4008 7080 3.638627 TCATACTAGCATGTCTCACCAGG 59.361 47.826 2.85 0.00 0.00 4.45
4058 7131 6.376864 CCATGGACACATCTACTAGGAGATAG 59.623 46.154 17.43 14.71 34.29 2.08
4163 7242 8.691661 AGTGGATGTCTTACAAATTACAAAGT 57.308 30.769 0.00 0.00 0.00 2.66
4242 7327 4.154195 GTGTGCTAATGGAAACTGTACTGG 59.846 45.833 4.66 0.00 0.00 4.00
4243 7328 4.997395 AGTGTGCTAATGGAAACTGTACTG 59.003 41.667 0.00 0.00 30.53 2.74
4256 7341 8.924303 TCAGTTATATCTTACCAGTGTGCTAAT 58.076 33.333 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.