Multiple sequence alignment - TraesCS3A01G445200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G445200 chr3A 100.000 5748 0 0 1 5748 686239002 686244749 0.000000e+00 10615.0
1 TraesCS3A01G445200 chr3A 81.624 936 131 26 3486 4407 727487885 727488793 0.000000e+00 737.0
2 TraesCS3A01G445200 chr3A 79.740 770 110 27 2163 2902 727486572 727487325 3.070000e-142 516.0
3 TraesCS3A01G445200 chr3A 83.778 450 50 12 2974 3419 727487367 727487797 6.940000e-109 405.0
4 TraesCS3A01G445200 chr3A 94.048 168 10 0 1231 1398 727485680 727485847 7.390000e-64 255.0
5 TraesCS3A01G445200 chr3A 88.000 100 9 3 5024 5120 686194526 686194427 1.310000e-21 115.0
6 TraesCS3A01G445200 chr3A 75.543 184 41 2 3 182 692955300 692955483 2.850000e-13 87.9
7 TraesCS3A01G445200 chr3A 89.394 66 6 1 4528 4593 727488937 727489001 1.330000e-11 82.4
8 TraesCS3A01G445200 chr3A 80.808 99 13 5 464 559 544397076 544396981 7.990000e-09 73.1
9 TraesCS3A01G445200 chr3A 93.478 46 3 0 5 50 692764997 692765042 1.030000e-07 69.4
10 TraesCS3A01G445200 chr3D 91.108 1642 87 25 3643 5249 548816383 548818000 0.000000e+00 2169.0
11 TraesCS3A01G445200 chr3D 92.182 1228 68 11 500 1707 548813505 548814724 0.000000e+00 1711.0
12 TraesCS3A01G445200 chr3D 89.374 1214 81 11 2234 3429 548815169 548816352 0.000000e+00 1483.0
13 TraesCS3A01G445200 chr3D 78.211 950 155 26 3476 4407 597619007 597619922 1.400000e-155 560.0
14 TraesCS3A01G445200 chr3D 92.784 388 23 4 1841 2228 548814726 548815108 1.810000e-154 556.0
15 TraesCS3A01G445200 chr3D 87.707 423 41 5 1 414 548812887 548813307 3.110000e-132 483.0
16 TraesCS3A01G445200 chr3D 91.066 347 27 3 5405 5748 548962319 548961974 3.140000e-127 466.0
17 TraesCS3A01G445200 chr3D 89.337 347 34 1 5405 5748 548825241 548825587 3.180000e-117 433.0
18 TraesCS3A01G445200 chr3D 84.841 409 51 3 2990 3398 597618600 597618997 8.970000e-108 401.0
19 TraesCS3A01G445200 chr3D 83.388 307 36 7 2171 2465 597617867 597618170 2.640000e-68 270.0
20 TraesCS3A01G445200 chr3D 94.574 129 5 2 5278 5404 548818093 548818221 1.260000e-46 198.0
21 TraesCS3A01G445200 chr3D 95.690 116 5 0 1704 1819 560754610 560754725 2.730000e-43 187.0
22 TraesCS3A01G445200 chr3D 95.455 110 5 0 1236 1345 597616992 597617101 5.920000e-40 176.0
23 TraesCS3A01G445200 chr3D 82.474 97 13 4 464 558 407230251 407230345 1.330000e-11 82.4
24 TraesCS3A01G445200 chr3D 88.060 67 6 2 4528 4593 597620066 597620131 1.720000e-10 78.7
25 TraesCS3A01G445200 chr3D 91.837 49 4 0 2 50 555884472 555884520 1.030000e-07 69.4
26 TraesCS3A01G445200 chr3B 91.010 1357 90 17 2095 3429 728133797 728135143 0.000000e+00 1801.0
27 TraesCS3A01G445200 chr3B 91.737 1065 50 13 668 1707 728132554 728133605 0.000000e+00 1445.0
28 TraesCS3A01G445200 chr3B 94.221 571 31 1 3643 4213 728135174 728135742 0.000000e+00 870.0
29 TraesCS3A01G445200 chr3B 85.144 727 63 19 4257 4949 728135759 728136474 0.000000e+00 702.0
30 TraesCS3A01G445200 chr3B 81.264 870 120 20 3596 4429 804319924 804320786 0.000000e+00 664.0
31 TraesCS3A01G445200 chr3B 81.316 851 123 16 3592 4409 804380151 804380998 0.000000e+00 658.0
32 TraesCS3A01G445200 chr3B 80.270 740 93 29 2163 2876 804373818 804374530 5.140000e-140 508.0
33 TraesCS3A01G445200 chr3B 87.136 412 22 14 5017 5404 728136473 728136877 6.840000e-119 438.0
34 TraesCS3A01G445200 chr3B 83.153 463 61 8 2973 3428 804319248 804319700 1.930000e-109 407.0
35 TraesCS3A01G445200 chr3B 82.590 471 68 9 1 459 728063561 728064029 2.490000e-108 403.0
36 TraesCS3A01G445200 chr3B 82.096 458 51 13 2977 3431 804379506 804379935 4.230000e-96 363.0
37 TraesCS3A01G445200 chr3B 80.075 532 56 26 915 1402 804317059 804317584 3.300000e-92 350.0
38 TraesCS3A01G445200 chr3B 88.927 289 14 8 5125 5399 727937573 727937289 1.980000e-89 340.0
39 TraesCS3A01G445200 chr3B 87.900 281 19 8 5121 5393 728080915 728080642 3.340000e-82 316.0
40 TraesCS3A01G445200 chr3B 80.998 421 57 16 2491 2902 804318809 804319215 4.320000e-81 313.0
41 TraesCS3A01G445200 chr3B 83.046 348 41 9 5405 5748 728137678 728138011 3.370000e-77 300.0
42 TraesCS3A01G445200 chr3B 87.204 211 26 1 2254 2464 804318610 804318819 7.440000e-59 239.0
43 TraesCS3A01G445200 chr3B 90.798 163 15 0 1236 1398 375544429 375544591 9.700000e-53 219.0
44 TraesCS3A01G445200 chr3B 74.648 213 40 11 4528 4738 804320910 804321110 1.330000e-11 82.4
45 TraesCS3A01G445200 chr3B 91.667 48 4 0 3 50 738994039 738994086 3.720000e-07 67.6
46 TraesCS3A01G445200 chr2A 81.706 727 107 10 3595 4298 605035838 605035115 2.980000e-162 582.0
47 TraesCS3A01G445200 chr2A 80.842 736 102 22 2163 2872 605037267 605036545 5.070000e-150 542.0
48 TraesCS3A01G445200 chr2A 84.783 506 75 2 3661 4166 605105547 605105044 1.850000e-139 507.0
49 TraesCS3A01G445200 chr2A 81.603 549 68 18 2354 2875 605106898 605106356 1.910000e-114 424.0
50 TraesCS3A01G445200 chr2A 83.023 430 43 8 2977 3406 605036470 605036071 4.230000e-96 363.0
51 TraesCS3A01G445200 chr2A 81.132 477 47 22 933 1401 605038436 605037995 5.520000e-90 342.0
52 TraesCS3A01G445200 chr2A 79.302 430 45 17 2977 3398 605106281 605105888 1.590000e-65 261.0
53 TraesCS3A01G445200 chr2A 93.827 162 10 0 1240 1401 605112868 605112707 1.600000e-60 244.0
54 TraesCS3A01G445200 chr2A 83.654 208 26 7 4206 4407 605104895 605104690 7.600000e-44 189.0
55 TraesCS3A01G445200 chr2A 75.714 210 39 9 4531 4739 605104542 605104344 1.710000e-15 95.3
56 TraesCS3A01G445200 chr2A 86.076 79 11 0 122 200 496669118 496669040 1.030000e-12 86.1
57 TraesCS3A01G445200 chr2A 87.671 73 9 0 122 194 689787163 689787091 1.030000e-12 86.1
58 TraesCS3A01G445200 chr1B 100.000 109 0 0 1704 1812 413985472 413985364 9.770000e-48 202.0
59 TraesCS3A01G445200 chr2B 100.000 108 0 0 1705 1812 693737237 693737130 3.510000e-47 200.0
60 TraesCS3A01G445200 chr2B 95.798 119 5 0 1701 1819 523232309 523232191 5.880000e-45 193.0
61 TraesCS3A01G445200 chr2B 82.222 90 16 0 110 199 653584198 653584287 1.720000e-10 78.7
62 TraesCS3A01G445200 chr7A 93.548 124 6 2 1703 1824 105722541 105722664 3.540000e-42 183.0
63 TraesCS3A01G445200 chr7A 94.872 117 5 1 1705 1820 176989580 176989464 1.270000e-41 182.0
64 TraesCS3A01G445200 chr1A 92.308 130 9 1 1690 1819 148610453 148610325 3.540000e-42 183.0
65 TraesCS3A01G445200 chr1A 95.614 114 4 1 1705 1818 384334448 384334560 1.270000e-41 182.0
66 TraesCS3A01G445200 chr5D 94.068 118 7 0 1705 1822 70640591 70640474 4.580000e-41 180.0
67 TraesCS3A01G445200 chr2D 85.897 78 11 0 122 199 546780088 546780165 3.690000e-12 84.2
68 TraesCS3A01G445200 chr7D 100.000 29 0 0 5446 5474 88199227 88199199 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G445200 chr3A 686239002 686244749 5747 False 10615.000000 10615 100.000000 1 5748 1 chr3A.!!$F1 5747
1 TraesCS3A01G445200 chr3A 727485680 727489001 3321 False 399.080000 737 85.716800 1231 4593 5 chr3A.!!$F4 3362
2 TraesCS3A01G445200 chr3D 548812887 548818221 5334 False 1100.000000 2169 91.288167 1 5404 6 chr3D.!!$F5 5403
3 TraesCS3A01G445200 chr3D 597616992 597620131 3139 False 297.140000 560 85.991000 1236 4593 5 chr3D.!!$F6 3357
4 TraesCS3A01G445200 chr3B 728132554 728138011 5457 False 926.000000 1801 88.715667 668 5748 6 chr3B.!!$F5 5080
5 TraesCS3A01G445200 chr3B 804379506 804380998 1492 False 510.500000 658 81.706000 2977 4409 2 chr3B.!!$F7 1432
6 TraesCS3A01G445200 chr3B 804373818 804374530 712 False 508.000000 508 80.270000 2163 2876 1 chr3B.!!$F4 713
7 TraesCS3A01G445200 chr3B 804317059 804321110 4051 False 342.566667 664 81.223667 915 4738 6 chr3B.!!$F6 3823
8 TraesCS3A01G445200 chr2A 605035115 605038436 3321 True 457.250000 582 81.675750 933 4298 4 chr2A.!!$R4 3365
9 TraesCS3A01G445200 chr2A 605104344 605106898 2554 True 295.260000 507 81.011200 2354 4739 5 chr2A.!!$R5 2385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 875 0.037605 GGTTGGACGGACTCAACGAT 60.038 55.0 0.00 0.00 42.81 3.73 F
974 1108 0.486879 TCCATTTCAAACCAGGCCCT 59.513 50.0 0.00 0.00 0.00 5.19 F
1814 2349 0.113776 AGTGAACGGAGGGAGTACCA 59.886 55.0 0.00 0.00 43.89 3.25 F
1988 2625 0.182061 ACAGCTACAGCATGATGGGG 59.818 55.0 16.55 8.39 45.16 4.96 F
2445 3234 0.526211 GGCAGTGGGGAAACGAATTC 59.474 55.0 0.00 0.00 37.31 2.17 F
4066 5059 0.397941 TGGACCTCCTTTCTGCAGTG 59.602 55.0 14.67 5.43 36.82 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 2330 0.113776 TGGTACTCCCTCCGTTCACT 59.886 55.0 0.00 0.00 0.00 3.41 R
2784 3626 0.097674 CTCTCATCTTTTTGGCCGCG 59.902 55.0 0.00 0.00 0.00 6.46 R
3474 4369 0.440758 CATGCGCCAATGCTTTTGTG 59.559 50.0 4.18 0.00 35.36 3.33 R
3671 4635 1.243902 TTGCCACATCGTTTCTTCCC 58.756 50.0 0.00 0.00 0.00 3.97 R
4183 5189 0.322906 GCTCACTTGAAGGAAGGGGG 60.323 60.0 0.00 0.00 38.82 5.40 R
5713 7806 0.108756 GGAGGGATAGCGGCGATAAC 60.109 60.0 12.98 7.68 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.644374 AGAAATACAAAGCACCCTAAACATAA 57.356 30.769 0.00 0.00 0.00 1.90
54 55 7.961325 ACAAAGCACCCTAAACATAAATTTG 57.039 32.000 0.00 0.00 0.00 2.32
64 65 7.255590 CCCTAAACATAAATTTGCATCGAGGAT 60.256 37.037 0.00 0.00 0.00 3.24
76 77 0.324738 TCGAGGATCCAGCTCCACTT 60.325 55.000 15.82 0.00 37.81 3.16
77 78 1.063942 TCGAGGATCCAGCTCCACTTA 60.064 52.381 15.82 0.00 37.81 2.24
78 79 1.339610 CGAGGATCCAGCTCCACTTAG 59.660 57.143 15.82 0.00 37.81 2.18
85 86 1.446907 CAGCTCCACTTAGCAACCAG 58.553 55.000 0.00 0.00 45.30 4.00
100 101 0.763035 ACCAGTACCACCACCAGAAC 59.237 55.000 0.00 0.00 0.00 3.01
109 110 1.669115 CCACCAGAACGAGGCACAG 60.669 63.158 0.00 0.00 0.00 3.66
134 135 2.890371 GCTTTCGTCGCTCCCCTA 59.110 61.111 0.00 0.00 0.00 3.53
141 142 1.380112 GTCGCTCCCCTACCAGAGT 60.380 63.158 0.00 0.00 32.47 3.24
165 166 1.808945 CTTGACCTGGTTGATGACAGC 59.191 52.381 0.00 0.00 33.43 4.40
167 168 1.271001 TGACCTGGTTGATGACAGCTG 60.271 52.381 13.48 13.48 33.43 4.24
172 173 1.271543 TGGTTGATGACAGCTGGGAAG 60.272 52.381 19.93 0.00 0.00 3.46
189 190 2.089980 GAAGTCTTCATGCATGTGCCT 58.910 47.619 25.43 12.46 41.18 4.75
204 205 2.301870 TGTGCCTCTAAAGACCATCGTT 59.698 45.455 0.00 0.00 0.00 3.85
220 229 0.452987 CGTTCCTGCCATCACCATTG 59.547 55.000 0.00 0.00 0.00 2.82
223 232 2.418368 TCCTGCCATCACCATTGTAC 57.582 50.000 0.00 0.00 0.00 2.90
242 251 4.466370 TGTACCCTTGAATCGATCTGAAGT 59.534 41.667 0.00 0.00 0.00 3.01
281 290 3.507924 GCCCGCATGCACGATGAA 61.508 61.111 19.57 0.00 33.31 2.57
285 294 1.469595 CCCGCATGCACGATGAAAAAT 60.470 47.619 19.57 0.00 33.31 1.82
288 297 2.195922 GCATGCACGATGAAAAATCCC 58.804 47.619 14.21 0.00 33.31 3.85
295 304 3.758554 CACGATGAAAAATCCCAACCTCT 59.241 43.478 0.00 0.00 0.00 3.69
296 305 4.010349 ACGATGAAAAATCCCAACCTCTC 58.990 43.478 0.00 0.00 0.00 3.20
304 313 0.479589 TCCCAACCTCTCCCCCAAAT 60.480 55.000 0.00 0.00 0.00 2.32
305 314 1.203635 TCCCAACCTCTCCCCCAAATA 60.204 52.381 0.00 0.00 0.00 1.40
306 315 1.215423 CCCAACCTCTCCCCCAAATAG 59.785 57.143 0.00 0.00 0.00 1.73
307 316 1.923148 CCAACCTCTCCCCCAAATAGT 59.077 52.381 0.00 0.00 0.00 2.12
317 326 4.774779 TCCCCCAAATAGTATAGCAGGAT 58.225 43.478 0.00 0.00 0.00 3.24
320 329 5.501156 CCCCAAATAGTATAGCAGGATTCC 58.499 45.833 0.00 0.00 0.00 3.01
322 331 6.297243 CCCCAAATAGTATAGCAGGATTCCAT 60.297 42.308 5.29 0.00 0.00 3.41
346 355 2.586357 GCTCCGCCGACTTCATCC 60.586 66.667 0.00 0.00 0.00 3.51
349 358 2.238847 CTCCGCCGACTTCATCCCAA 62.239 60.000 0.00 0.00 0.00 4.12
360 369 5.391950 CGACTTCATCCCAATGAACGAATTT 60.392 40.000 0.00 0.00 44.94 1.82
400 409 3.686622 GATGAAGCGCCATCTACCA 57.313 52.632 16.52 0.89 39.73 3.25
403 412 1.448985 TGAAGCGCCATCTACCAAAC 58.551 50.000 2.29 0.00 0.00 2.93
407 416 2.469516 CGCCATCTACCAAACCGCC 61.470 63.158 0.00 0.00 0.00 6.13
408 417 1.077716 GCCATCTACCAAACCGCCT 60.078 57.895 0.00 0.00 0.00 5.52
412 421 1.632965 ATCTACCAAACCGCCTCCCC 61.633 60.000 0.00 0.00 0.00 4.81
413 422 2.204029 TACCAAACCGCCTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
414 423 2.536997 CTACCAAACCGCCTCCCCTG 62.537 65.000 0.00 0.00 0.00 4.45
415 424 3.966543 CCAAACCGCCTCCCCTGT 61.967 66.667 0.00 0.00 0.00 4.00
416 425 2.598787 CCAAACCGCCTCCCCTGTA 61.599 63.158 0.00 0.00 0.00 2.74
417 426 1.377229 CAAACCGCCTCCCCTGTAA 59.623 57.895 0.00 0.00 0.00 2.41
418 427 0.676782 CAAACCGCCTCCCCTGTAAG 60.677 60.000 0.00 0.00 0.00 2.34
419 428 0.838987 AAACCGCCTCCCCTGTAAGA 60.839 55.000 0.00 0.00 34.07 2.10
420 429 0.838987 AACCGCCTCCCCTGTAAGAA 60.839 55.000 0.00 0.00 34.07 2.52
421 430 0.838987 ACCGCCTCCCCTGTAAGAAA 60.839 55.000 0.00 0.00 34.07 2.52
422 431 0.326927 CCGCCTCCCCTGTAAGAAAA 59.673 55.000 0.00 0.00 34.07 2.29
423 432 1.064685 CCGCCTCCCCTGTAAGAAAAT 60.065 52.381 0.00 0.00 34.07 1.82
424 433 2.171870 CCGCCTCCCCTGTAAGAAAATA 59.828 50.000 0.00 0.00 34.07 1.40
425 434 3.203716 CGCCTCCCCTGTAAGAAAATAC 58.796 50.000 0.00 0.00 34.07 1.89
426 435 3.370103 CGCCTCCCCTGTAAGAAAATACA 60.370 47.826 0.00 0.00 34.07 2.29
427 436 3.945921 GCCTCCCCTGTAAGAAAATACAC 59.054 47.826 0.00 0.00 34.07 2.90
428 437 4.324331 GCCTCCCCTGTAAGAAAATACACT 60.324 45.833 0.00 0.00 34.07 3.55
429 438 5.186198 CCTCCCCTGTAAGAAAATACACTG 58.814 45.833 0.00 0.00 34.07 3.66
430 439 5.045869 CCTCCCCTGTAAGAAAATACACTGA 60.046 44.000 0.00 0.00 34.07 3.41
431 440 5.801380 TCCCCTGTAAGAAAATACACTGAC 58.199 41.667 0.00 0.00 34.07 3.51
432 441 4.941873 CCCCTGTAAGAAAATACACTGACC 59.058 45.833 0.00 0.00 34.07 4.02
433 442 5.280521 CCCCTGTAAGAAAATACACTGACCT 60.281 44.000 0.00 0.00 34.07 3.85
434 443 6.070424 CCCCTGTAAGAAAATACACTGACCTA 60.070 42.308 0.00 0.00 34.07 3.08
435 444 7.391620 CCCTGTAAGAAAATACACTGACCTAA 58.608 38.462 0.00 0.00 34.07 2.69
436 445 7.549488 CCCTGTAAGAAAATACACTGACCTAAG 59.451 40.741 0.00 0.00 34.07 2.18
437 446 7.064728 CCTGTAAGAAAATACACTGACCTAAGC 59.935 40.741 0.00 0.00 34.07 3.09
438 447 7.676947 TGTAAGAAAATACACTGACCTAAGCT 58.323 34.615 0.00 0.00 31.03 3.74
439 448 8.809066 TGTAAGAAAATACACTGACCTAAGCTA 58.191 33.333 0.00 0.00 31.03 3.32
440 449 9.819267 GTAAGAAAATACACTGACCTAAGCTAT 57.181 33.333 0.00 0.00 0.00 2.97
444 453 8.664211 AAAATACACTGACCTAAGCTATTAGC 57.336 34.615 7.64 7.64 42.84 3.09
445 454 4.674281 ACACTGACCTAAGCTATTAGCC 57.326 45.455 12.05 0.00 43.77 3.93
446 455 3.068307 ACACTGACCTAAGCTATTAGCCG 59.932 47.826 12.05 1.70 43.77 5.52
447 456 3.318275 CACTGACCTAAGCTATTAGCCGA 59.682 47.826 12.05 0.00 43.77 5.54
448 457 3.570550 ACTGACCTAAGCTATTAGCCGAG 59.429 47.826 12.05 9.30 43.77 4.63
449 458 2.296471 TGACCTAAGCTATTAGCCGAGC 59.704 50.000 12.05 0.00 43.77 5.03
450 459 1.619332 ACCTAAGCTATTAGCCGAGCC 59.381 52.381 12.05 0.00 43.77 4.70
451 460 1.618837 CCTAAGCTATTAGCCGAGCCA 59.381 52.381 12.05 0.00 43.77 4.75
452 461 2.037251 CCTAAGCTATTAGCCGAGCCAA 59.963 50.000 12.05 0.00 43.77 4.52
453 462 2.246719 AAGCTATTAGCCGAGCCAAG 57.753 50.000 12.05 0.00 43.77 3.61
454 463 0.394565 AGCTATTAGCCGAGCCAAGG 59.605 55.000 12.05 0.00 43.77 3.61
455 464 0.393077 GCTATTAGCCGAGCCAAGGA 59.607 55.000 4.21 0.00 34.48 3.36
456 465 1.202651 GCTATTAGCCGAGCCAAGGAA 60.203 52.381 4.21 0.00 34.48 3.36
457 466 2.484889 CTATTAGCCGAGCCAAGGAAC 58.515 52.381 0.00 0.00 0.00 3.62
458 467 0.107165 ATTAGCCGAGCCAAGGAACC 60.107 55.000 0.00 0.00 0.00 3.62
459 468 2.193087 TTAGCCGAGCCAAGGAACCC 62.193 60.000 0.00 0.00 0.00 4.11
461 470 4.426313 CCGAGCCAAGGAACCCCC 62.426 72.222 0.00 0.00 0.00 5.40
518 638 3.721868 GGGGAGGTTGATCCACGA 58.278 61.111 0.00 0.00 41.52 4.35
526 646 3.699955 TTGATCCACGAGCTCGCCG 62.700 63.158 34.83 25.20 44.43 6.46
547 667 0.253044 CGAAGCTTGGAGGGGATGAA 59.747 55.000 2.10 0.00 0.00 2.57
550 670 1.302907 AGCTTGGAGGGGATGAATGT 58.697 50.000 0.00 0.00 0.00 2.71
558 678 2.777692 GAGGGGATGAATGTCCTAACCA 59.222 50.000 0.00 0.00 38.38 3.67
559 679 3.395941 GAGGGGATGAATGTCCTAACCAT 59.604 47.826 0.00 0.00 38.38 3.55
562 682 4.713792 GGATGAATGTCCTAACCATCCT 57.286 45.455 11.27 0.00 45.90 3.24
577 697 3.468552 TCCTGAACGGAAGAGGGAA 57.531 52.632 0.00 0.00 39.40 3.97
578 698 0.974383 TCCTGAACGGAAGAGGGAAC 59.026 55.000 0.00 0.00 39.40 3.62
588 708 0.680061 AAGAGGGAACGAGAAACGCT 59.320 50.000 0.00 0.00 46.94 5.07
590 710 1.473278 AGAGGGAACGAGAAACGCTAG 59.527 52.381 0.00 0.00 46.94 3.42
605 725 7.472543 AGAAACGCTAGCAATATTAAACAAGG 58.527 34.615 16.45 0.00 0.00 3.61
610 730 6.687105 CGCTAGCAATATTAAACAAGGTTGAC 59.313 38.462 16.45 0.00 0.00 3.18
617 737 4.904253 TTAAACAAGGTTGACCGGAAAG 57.096 40.909 9.46 0.00 42.08 2.62
667 790 6.814954 ATGAAGGGAGTAATATGACACACT 57.185 37.500 0.00 0.00 0.00 3.55
676 799 8.639761 GGAGTAATATGACACACTATTACACCT 58.360 37.037 17.75 3.71 42.32 4.00
680 803 4.530710 TGACACACTATTACACCTGGTC 57.469 45.455 0.00 0.00 0.00 4.02
714 837 0.539986 ACTAGGCCGTATGGTTGGTG 59.460 55.000 2.17 0.00 37.67 4.17
752 875 0.037605 GGTTGGACGGACTCAACGAT 60.038 55.000 0.00 0.00 42.81 3.73
814 937 2.281761 CACACAGACCCCACAGCC 60.282 66.667 0.00 0.00 0.00 4.85
970 1104 4.262164 CCTTCAACTCCATTTCAAACCAGG 60.262 45.833 0.00 0.00 0.00 4.45
974 1108 0.486879 TCCATTTCAAACCAGGCCCT 59.513 50.000 0.00 0.00 0.00 5.19
1100 1257 2.361610 CGCTGCCAATGGGAAGGT 60.362 61.111 0.00 0.00 40.68 3.50
1183 1349 1.268899 CCGCCTCCGATCGTATTTACT 59.731 52.381 15.09 0.00 36.29 2.24
1517 2052 8.286191 AGATTGGTGATTAGGATCAAGTTTTC 57.714 34.615 0.00 0.00 43.58 2.29
1527 2062 3.578688 GATCAAGTTTTCCATGTGGCAC 58.421 45.455 11.55 11.55 34.44 5.01
1571 2106 0.816421 TATCGGGTCGAGTGATCGCA 60.816 55.000 9.33 0.00 39.91 5.10
1707 2242 9.660180 GTCATCTCCTTATTTTTCTTCAGTACT 57.340 33.333 0.00 0.00 0.00 2.73
1709 2244 9.103861 CATCTCCTTATTTTTCTTCAGTACTCC 57.896 37.037 0.00 0.00 0.00 3.85
1710 2245 7.621796 TCTCCTTATTTTTCTTCAGTACTCCC 58.378 38.462 0.00 0.00 0.00 4.30
1712 2247 7.621796 TCCTTATTTTTCTTCAGTACTCCCTC 58.378 38.462 0.00 0.00 0.00 4.30
1713 2248 6.824196 CCTTATTTTTCTTCAGTACTCCCTCC 59.176 42.308 0.00 0.00 0.00 4.30
1714 2249 3.955650 TTTTCTTCAGTACTCCCTCCG 57.044 47.619 0.00 0.00 0.00 4.63
1715 2250 2.599408 TTCTTCAGTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
1716 2251 2.599408 TCTTCAGTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
1717 2252 2.444421 TCTTCAGTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
1718 2253 2.168496 CTTCAGTACTCCCTCCGTTCA 58.832 52.381 0.00 0.00 0.00 3.18
1719 2254 2.526888 TCAGTACTCCCTCCGTTCAT 57.473 50.000 0.00 0.00 0.00 2.57
1720 2255 2.816411 TCAGTACTCCCTCCGTTCATT 58.184 47.619 0.00 0.00 0.00 2.57
1721 2256 3.170717 TCAGTACTCCCTCCGTTCATTT 58.829 45.455 0.00 0.00 0.00 2.32
1722 2257 3.581332 TCAGTACTCCCTCCGTTCATTTT 59.419 43.478 0.00 0.00 0.00 1.82
1723 2258 4.041198 TCAGTACTCCCTCCGTTCATTTTT 59.959 41.667 0.00 0.00 0.00 1.94
1724 2259 5.246656 TCAGTACTCCCTCCGTTCATTTTTA 59.753 40.000 0.00 0.00 0.00 1.52
1725 2260 6.070424 TCAGTACTCCCTCCGTTCATTTTTAT 60.070 38.462 0.00 0.00 0.00 1.40
1726 2261 7.124599 TCAGTACTCCCTCCGTTCATTTTTATA 59.875 37.037 0.00 0.00 0.00 0.98
1727 2262 7.767198 CAGTACTCCCTCCGTTCATTTTTATAA 59.233 37.037 0.00 0.00 0.00 0.98
1728 2263 7.985752 AGTACTCCCTCCGTTCATTTTTATAAG 59.014 37.037 0.00 0.00 0.00 1.73
1729 2264 6.954232 ACTCCCTCCGTTCATTTTTATAAGA 58.046 36.000 0.00 0.00 0.00 2.10
1730 2265 6.822170 ACTCCCTCCGTTCATTTTTATAAGAC 59.178 38.462 0.00 0.00 0.00 3.01
1731 2266 6.117488 TCCCTCCGTTCATTTTTATAAGACC 58.883 40.000 0.00 0.00 0.00 3.85
1732 2267 6.069847 TCCCTCCGTTCATTTTTATAAGACCT 60.070 38.462 0.00 0.00 0.00 3.85
1733 2268 6.602009 CCCTCCGTTCATTTTTATAAGACCTT 59.398 38.462 0.00 0.00 0.00 3.50
1734 2269 7.415206 CCCTCCGTTCATTTTTATAAGACCTTG 60.415 40.741 0.00 0.00 0.00 3.61
1735 2270 7.335924 CCTCCGTTCATTTTTATAAGACCTTGA 59.664 37.037 0.00 0.00 0.00 3.02
1736 2271 8.624367 TCCGTTCATTTTTATAAGACCTTGAA 57.376 30.769 0.00 0.00 0.00 2.69
1737 2272 8.726988 TCCGTTCATTTTTATAAGACCTTGAAG 58.273 33.333 0.00 0.00 0.00 3.02
1738 2273 8.726988 CCGTTCATTTTTATAAGACCTTGAAGA 58.273 33.333 0.00 0.00 0.00 2.87
1739 2274 9.543018 CGTTCATTTTTATAAGACCTTGAAGAC 57.457 33.333 0.00 0.00 0.00 3.01
1748 2283 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
1749 2284 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
1750 2285 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
1751 2286 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
1752 2287 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
1754 2289 6.147581 CCTTGAAGACATTTCAGACAATGTG 58.852 40.000 12.82 2.31 45.55 3.21
1755 2290 5.112220 TGAAGACATTTCAGACAATGTGC 57.888 39.130 12.82 7.29 45.55 4.57
1756 2291 4.579753 TGAAGACATTTCAGACAATGTGCA 59.420 37.500 12.82 0.00 45.55 4.57
1757 2292 5.067544 TGAAGACATTTCAGACAATGTGCAA 59.932 36.000 12.82 0.00 45.55 4.08
1758 2293 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
1759 2294 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
1760 2295 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
1761 2296 5.417811 ACATTTCAGACAATGTGCAAAACA 58.582 33.333 0.00 0.00 44.19 2.83
1762 2297 5.873712 ACATTTCAGACAATGTGCAAAACAA 59.126 32.000 0.00 0.00 44.19 2.83
1763 2298 5.776519 TTTCAGACAATGTGCAAAACAAC 57.223 34.783 0.00 0.00 43.61 3.32
1764 2299 3.779759 TCAGACAATGTGCAAAACAACC 58.220 40.909 0.00 0.00 43.61 3.77
1765 2300 3.446873 TCAGACAATGTGCAAAACAACCT 59.553 39.130 0.00 0.00 43.61 3.50
1766 2301 4.642437 TCAGACAATGTGCAAAACAACCTA 59.358 37.500 0.00 0.00 43.61 3.08
1767 2302 5.301551 TCAGACAATGTGCAAAACAACCTAT 59.698 36.000 0.00 0.00 43.61 2.57
1768 2303 5.984926 CAGACAATGTGCAAAACAACCTATT 59.015 36.000 0.00 0.00 43.61 1.73
1769 2304 6.479660 CAGACAATGTGCAAAACAACCTATTT 59.520 34.615 0.00 0.00 43.61 1.40
1770 2305 7.011295 CAGACAATGTGCAAAACAACCTATTTT 59.989 33.333 0.00 0.00 43.61 1.82
1771 2306 7.011295 AGACAATGTGCAAAACAACCTATTTTG 59.989 33.333 0.00 5.96 45.68 2.44
1772 2307 6.597280 ACAATGTGCAAAACAACCTATTTTGT 59.403 30.769 10.82 0.00 45.03 2.83
1773 2308 6.601741 ATGTGCAAAACAACCTATTTTGTG 57.398 33.333 10.82 0.00 45.03 3.33
1774 2309 5.482908 TGTGCAAAACAACCTATTTTGTGT 58.517 33.333 10.82 0.00 45.03 3.72
1775 2310 5.934625 TGTGCAAAACAACCTATTTTGTGTT 59.065 32.000 10.82 0.00 45.03 3.32
1784 2319 7.449934 CAACCTATTTTGTGTTGTCTGAAAC 57.550 36.000 0.00 0.00 35.72 2.78
1785 2320 5.816919 ACCTATTTTGTGTTGTCTGAAACG 58.183 37.500 0.00 0.00 32.47 3.60
1786 2321 5.587043 ACCTATTTTGTGTTGTCTGAAACGA 59.413 36.000 0.00 0.00 32.47 3.85
1787 2322 5.907391 CCTATTTTGTGTTGTCTGAAACGAC 59.093 40.000 0.00 0.00 41.96 4.34
1788 2323 5.560966 ATTTTGTGTTGTCTGAAACGACT 57.439 34.783 0.00 0.00 42.09 4.18
1789 2324 5.365403 TTTTGTGTTGTCTGAAACGACTT 57.635 34.783 0.00 0.00 42.09 3.01
1790 2325 6.483385 TTTTGTGTTGTCTGAAACGACTTA 57.517 33.333 0.00 0.00 42.09 2.24
1791 2326 5.459110 TTGTGTTGTCTGAAACGACTTAC 57.541 39.130 0.00 0.00 42.09 2.34
1792 2327 4.496360 TGTGTTGTCTGAAACGACTTACA 58.504 39.130 0.00 0.00 42.09 2.41
1793 2328 4.930405 TGTGTTGTCTGAAACGACTTACAA 59.070 37.500 0.00 0.00 42.09 2.41
1794 2329 5.408909 TGTGTTGTCTGAAACGACTTACAAA 59.591 36.000 0.00 0.00 42.09 2.83
1795 2330 6.073167 TGTGTTGTCTGAAACGACTTACAAAA 60.073 34.615 0.00 0.00 42.09 2.44
1796 2331 6.464834 GTGTTGTCTGAAACGACTTACAAAAG 59.535 38.462 0.00 0.00 42.09 2.27
1798 2333 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
1799 2334 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
1800 2335 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
1801 2336 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
1802 2337 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
1803 2338 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
1804 2339 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
1805 2340 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
1806 2341 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
1807 2342 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
1808 2343 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
1809 2344 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
1810 2345 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
1811 2346 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
1812 2347 3.064931 CAAAAGTGAACGGAGGGAGTAC 58.935 50.000 0.00 0.00 0.00 2.73
1813 2348 1.264295 AAGTGAACGGAGGGAGTACC 58.736 55.000 0.00 0.00 40.67 3.34
1814 2349 0.113776 AGTGAACGGAGGGAGTACCA 59.886 55.000 0.00 0.00 43.89 3.25
1815 2350 0.971386 GTGAACGGAGGGAGTACCAA 59.029 55.000 0.00 0.00 43.89 3.67
1816 2351 1.345415 GTGAACGGAGGGAGTACCAAA 59.655 52.381 0.00 0.00 43.89 3.28
1817 2352 2.027469 GTGAACGGAGGGAGTACCAAAT 60.027 50.000 0.00 0.00 43.89 2.32
1818 2353 2.640826 TGAACGGAGGGAGTACCAAATT 59.359 45.455 0.00 0.00 43.89 1.82
1819 2354 3.839490 TGAACGGAGGGAGTACCAAATTA 59.161 43.478 0.00 0.00 43.89 1.40
1820 2355 4.081309 TGAACGGAGGGAGTACCAAATTAG 60.081 45.833 0.00 0.00 43.89 1.73
1821 2356 3.447950 ACGGAGGGAGTACCAAATTAGT 58.552 45.455 0.00 0.00 43.89 2.24
1822 2357 3.197116 ACGGAGGGAGTACCAAATTAGTG 59.803 47.826 0.00 0.00 43.89 2.74
1823 2358 3.431766 CGGAGGGAGTACCAAATTAGTGG 60.432 52.174 0.00 0.00 43.89 4.00
1824 2359 3.778629 GGAGGGAGTACCAAATTAGTGGA 59.221 47.826 3.10 0.00 41.65 4.02
1825 2360 4.141688 GGAGGGAGTACCAAATTAGTGGAG 60.142 50.000 3.10 0.00 41.65 3.86
1826 2361 4.436079 AGGGAGTACCAAATTAGTGGAGT 58.564 43.478 3.10 0.00 41.65 3.85
1827 2362 5.596763 AGGGAGTACCAAATTAGTGGAGTA 58.403 41.667 3.10 0.00 41.65 2.59
1828 2363 5.661759 AGGGAGTACCAAATTAGTGGAGTAG 59.338 44.000 3.10 0.00 41.65 2.57
1829 2364 5.424573 GGGAGTACCAAATTAGTGGAGTAGT 59.575 44.000 3.10 0.00 41.65 2.73
1830 2365 6.608808 GGGAGTACCAAATTAGTGGAGTAGTA 59.391 42.308 3.10 0.00 41.65 1.82
1831 2366 7.289549 GGGAGTACCAAATTAGTGGAGTAGTAT 59.710 40.741 3.10 0.00 41.65 2.12
1832 2367 8.702819 GGAGTACCAAATTAGTGGAGTAGTATT 58.297 37.037 3.10 0.00 41.65 1.89
1834 2369 9.886132 AGTACCAAATTAGTGGAGTAGTATTTG 57.114 33.333 3.10 0.00 41.65 2.32
1835 2370 9.662947 GTACCAAATTAGTGGAGTAGTATTTGT 57.337 33.333 3.10 0.00 41.65 2.83
1837 2372 9.010029 ACCAAATTAGTGGAGTAGTATTTGTTG 57.990 33.333 3.10 0.00 41.65 3.33
1838 2373 7.968405 CCAAATTAGTGGAGTAGTATTTGTTGC 59.032 37.037 0.00 0.00 41.65 4.17
1839 2374 8.730680 CAAATTAGTGGAGTAGTATTTGTTGCT 58.269 33.333 0.00 0.00 0.00 3.91
1856 2417 5.865085 TGTTGCTAGTTTCACCTTCAGTAT 58.135 37.500 0.00 0.00 0.00 2.12
1913 2484 2.351641 CGGTTGTCCATGGTTCATTGTG 60.352 50.000 12.58 0.70 0.00 3.33
1923 2494 1.200020 GGTTCATTGTGGTGCTACTGC 59.800 52.381 0.00 0.00 40.20 4.40
1980 2617 4.470334 TCATGATTGTACAGCTACAGCA 57.530 40.909 3.70 0.00 45.16 4.41
1988 2625 0.182061 ACAGCTACAGCATGATGGGG 59.818 55.000 16.55 8.39 45.16 4.96
1989 2626 1.150081 AGCTACAGCATGATGGGGC 59.850 57.895 16.55 17.53 45.16 5.80
2033 2680 3.007182 AGGGGATTTGCATTTTGTCAGTG 59.993 43.478 0.00 0.00 0.00 3.66
2037 2684 5.048083 GGGATTTGCATTTTGTCAGTGACTA 60.048 40.000 23.29 13.95 33.15 2.59
2198 2906 6.234920 TCTTGAGAAATTCCCGACATGTTTA 58.765 36.000 0.00 0.00 0.00 2.01
2235 3007 8.093927 TCTTGTTGCCATTCATATATCGTATCA 58.906 33.333 0.00 0.00 0.00 2.15
2244 3016 8.966194 CATTCATATATCGTATCATGTCTCTGC 58.034 37.037 0.00 0.00 0.00 4.26
2394 3183 2.257676 GCAGCAGAACAAGGCAGC 59.742 61.111 0.00 0.00 35.42 5.25
2414 3203 2.552802 CTATAGCAGCTGCCATGGC 58.447 57.895 34.39 30.54 43.38 4.40
2425 3214 1.686800 GCCATGGCAGGGGTTGAAT 60.687 57.895 32.08 0.00 41.49 2.57
2445 3234 0.526211 GGCAGTGGGGAAACGAATTC 59.474 55.000 0.00 0.00 37.31 2.17
2505 3316 5.702209 AGGTTGGCTGCTTATTTCAATTTTG 59.298 36.000 0.00 0.00 0.00 2.44
2536 3347 4.283467 CCCATGATGCATTCCATTCAGATT 59.717 41.667 0.00 0.00 33.29 2.40
2583 3416 0.611714 TTCGGGTCCTTACTTCAGGC 59.388 55.000 0.00 0.00 33.35 4.85
2675 3509 9.077885 TGAAAATAGCAGGTCAAATTTCTACTT 57.922 29.630 0.00 0.00 0.00 2.24
2679 3513 9.515226 AATAGCAGGTCAAATTTCTACTTACAA 57.485 29.630 0.00 0.00 0.00 2.41
2693 3527 7.290857 TCTACTTACAAGAAAATGCGTGATC 57.709 36.000 0.00 0.00 0.00 2.92
2748 3590 7.171678 ACTGAATATTTCTATCGCCTTTGTAGC 59.828 37.037 0.00 0.00 0.00 3.58
2760 3602 2.218603 CTTTGTAGCGTTCCAGTGGTT 58.781 47.619 9.54 0.00 0.00 3.67
2761 3603 3.395639 CTTTGTAGCGTTCCAGTGGTTA 58.604 45.455 9.54 0.00 0.00 2.85
2784 3626 6.940831 ACTCCTTTAGATCTAGTAACCGTC 57.059 41.667 2.02 0.00 0.00 4.79
2902 3746 7.166167 AGTCGTGTAGATTTTAAATTGTCCCT 58.834 34.615 0.00 0.00 0.00 4.20
3027 3880 1.966451 GGCACAAAGTCTGTCCCCG 60.966 63.158 0.00 0.00 35.47 5.73
3106 3975 7.315142 TGAGCAATCATGATTTTGTTCCTTAC 58.685 34.615 18.41 0.00 33.64 2.34
3107 3976 7.039853 TGAGCAATCATGATTTTGTTCCTTACA 60.040 33.333 18.41 0.08 33.64 2.41
3108 3977 7.844009 AGCAATCATGATTTTGTTCCTTACAT 58.156 30.769 18.41 0.00 36.44 2.29
3109 3978 8.970020 AGCAATCATGATTTTGTTCCTTACATA 58.030 29.630 18.41 0.00 36.44 2.29
3137 4009 8.410673 TTTTCACTAGTTGGTTAAATATGCCA 57.589 30.769 0.00 0.00 0.00 4.92
3269 4141 5.568685 TGCAAACAAAAGCAAGTAGTACA 57.431 34.783 2.52 0.00 37.90 2.90
3387 4266 2.819608 GTTAACCCAAGCAAGCATCTCA 59.180 45.455 0.00 0.00 0.00 3.27
3436 4331 3.165071 ACCAAGGGAGGTTAATTTGCAG 58.835 45.455 0.00 0.00 39.34 4.41
3443 4338 5.191722 AGGGAGGTTAATTTGCAGTATCTCA 59.808 40.000 0.00 0.00 0.00 3.27
3458 4353 6.989169 GCAGTATCTCATCCTGTTACAGAAAT 59.011 38.462 14.66 4.25 32.44 2.17
3459 4354 7.497249 GCAGTATCTCATCCTGTTACAGAAATT 59.503 37.037 14.66 0.00 32.44 1.82
3510 4432 4.554723 GCGCATGAGTTCTGTTTTTGTAGT 60.555 41.667 0.30 0.00 0.00 2.73
3529 4451 9.725019 TTTGTAGTATCAAACTGATTCAGTCAT 57.275 29.630 19.23 13.49 44.62 3.06
3531 4454 7.765819 TGTAGTATCAAACTGATTCAGTCATGG 59.234 37.037 19.23 9.53 44.62 3.66
3583 4506 7.933396 TCTGTTGGCATATGATAGTTTTCATG 58.067 34.615 6.97 0.00 36.97 3.07
3590 4540 8.355169 GGCATATGATAGTTTTCATGACATTGT 58.645 33.333 6.97 0.00 36.97 2.71
3624 4574 8.954950 AATACGTTCTCTTCATTTCTCATCAT 57.045 30.769 0.00 0.00 0.00 2.45
3739 4703 1.664321 GCTCTTGCCTTGCATCCAGG 61.664 60.000 0.00 0.00 38.76 4.45
3840 4805 8.171196 CAGTATTTTGTTATGTAGTGCAGTGAG 58.829 37.037 3.69 0.00 0.00 3.51
3885 4850 3.458872 TGCTGAAGGGAAGCATACG 57.541 52.632 0.00 0.00 45.50 3.06
3991 4962 7.120432 GCATTTCTCATCTTACTTTCCTGACTT 59.880 37.037 0.00 0.00 0.00 3.01
4005 4976 7.123547 ACTTTCCTGACTTTGGTTTTGTTGATA 59.876 33.333 0.00 0.00 0.00 2.15
4042 5032 1.163554 CTTGCCTGCCTGAAGTTCTC 58.836 55.000 4.17 0.00 0.00 2.87
4066 5059 0.397941 TGGACCTCCTTTCTGCAGTG 59.602 55.000 14.67 5.43 36.82 3.66
4121 5114 4.209538 TGCATACAGATTGGGAATGGAAG 58.790 43.478 0.00 0.00 0.00 3.46
4170 5176 4.760204 GGTAAGAGGTTGAGCTTTGCTTAA 59.240 41.667 0.00 0.00 39.88 1.85
4219 5320 1.006922 GCAACAGGGCAAGCAGAAC 60.007 57.895 0.00 0.00 0.00 3.01
4265 5384 9.990868 AAGTAGGATTTGTGGACCTATATTTTT 57.009 29.630 0.00 0.00 38.33 1.94
4367 5487 2.952783 GCGGCAATTGAGCATGCG 60.953 61.111 13.01 0.00 43.47 4.73
4375 5495 2.612672 CAATTGAGCATGCGAGATCAGT 59.387 45.455 13.01 4.41 35.10 3.41
4460 5623 2.270923 CTATGCGCAACAGCTAGAACA 58.729 47.619 17.11 0.00 38.13 3.18
4525 5707 4.846779 TGTGAGGCTTACAACAATTTCC 57.153 40.909 9.96 0.00 0.00 3.13
4648 5831 0.887836 TAGATACCTCGATGGCGCGT 60.888 55.000 8.43 0.00 40.22 6.01
4803 5987 2.770164 AGATGCACTTACACAGGACC 57.230 50.000 0.00 0.00 0.00 4.46
4805 5989 0.036388 ATGCACTTACACAGGACCGG 60.036 55.000 0.00 0.00 0.00 5.28
4852 6050 2.111756 CAACACGCTGAGAGTTTTTGC 58.888 47.619 0.00 0.00 31.28 3.68
4906 6104 3.945285 GGGTTCAGAGAGTGTGTTTTTCA 59.055 43.478 0.00 0.00 0.00 2.69
4908 6106 5.506317 GGGTTCAGAGAGTGTGTTTTTCATG 60.506 44.000 0.00 0.00 0.00 3.07
4919 6117 2.428890 TGTTTTTCATGTTGGGCGTTCT 59.571 40.909 0.00 0.00 0.00 3.01
4920 6118 3.632604 TGTTTTTCATGTTGGGCGTTCTA 59.367 39.130 0.00 0.00 0.00 2.10
4921 6119 4.098044 TGTTTTTCATGTTGGGCGTTCTAA 59.902 37.500 0.00 0.00 0.00 2.10
4922 6120 4.497473 TTTTCATGTTGGGCGTTCTAAG 57.503 40.909 0.00 0.00 0.00 2.18
4935 6133 4.748600 GGCGTTCTAAGTACTTGTGAGTTT 59.251 41.667 18.56 0.00 37.33 2.66
4947 6145 2.374184 TGTGAGTTTTGACAACAGGGG 58.626 47.619 0.00 0.00 0.00 4.79
4948 6146 2.291282 TGTGAGTTTTGACAACAGGGGT 60.291 45.455 0.00 0.00 0.00 4.95
4974 6172 9.203421 TGTGTATATTCAGCCGTTCAAATATAG 57.797 33.333 0.00 0.00 30.92 1.31
4986 6184 6.420008 CCGTTCAAATATAGGAACCTTACGAG 59.580 42.308 11.65 0.39 40.13 4.18
4991 6189 7.230913 TCAAATATAGGAACCTTACGAGGAGAG 59.769 40.741 0.00 0.00 46.74 3.20
4997 6195 4.263435 GAACCTTACGAGGAGAGAGAGAA 58.737 47.826 0.00 0.00 46.74 2.87
5009 6207 3.529533 AGAGAGAGAAAATGATGCACCG 58.470 45.455 0.00 0.00 0.00 4.94
5060 6267 5.228665 CCATGCATGTAAACACACAAATGA 58.771 37.500 24.58 0.00 30.84 2.57
5063 6270 6.625873 TGCATGTAAACACACAAATGACTA 57.374 33.333 0.00 0.00 30.84 2.59
5066 6273 8.787852 TGCATGTAAACACACAAATGACTAATA 58.212 29.630 0.00 0.00 30.84 0.98
5067 6274 9.619316 GCATGTAAACACACAAATGACTAATAA 57.381 29.630 0.00 0.00 30.84 1.40
5095 6303 5.273674 TCCTCAACAGCTGATATTCTGAG 57.726 43.478 23.35 18.68 32.14 3.35
5150 6362 1.476471 GGGAGATGATGAACCAGCCTG 60.476 57.143 0.00 0.00 0.00 4.85
5170 6382 1.310933 ATCCTCCAAGCAAGCAAGCG 61.311 55.000 0.00 0.00 40.15 4.68
5172 6384 1.518056 CCTCCAAGCAAGCAAGCGAA 61.518 55.000 0.00 0.00 40.15 4.70
5219 6443 7.672660 TGGGTTAATTAGTCTTGAGTACAGAGA 59.327 37.037 0.00 0.00 0.00 3.10
5236 6460 2.905085 AGAGATACCCAGATGGCATGAG 59.095 50.000 3.81 0.00 37.83 2.90
5387 6677 4.297299 AGGCAATTCAGCATACAATTCG 57.703 40.909 0.00 0.00 35.83 3.34
5393 6683 7.095229 GGCAATTCAGCATACAATTCGATACTA 60.095 37.037 0.00 0.00 35.83 1.82
5424 7514 1.429463 GTCTACGTGGTTGGCTCTTG 58.571 55.000 0.00 0.00 0.00 3.02
5426 7516 0.673644 CTACGTGGTTGGCTCTTGGG 60.674 60.000 0.00 0.00 0.00 4.12
5460 7553 4.583871 ACAGTAATGGCTTTCTCTCTTGG 58.416 43.478 0.00 0.00 0.00 3.61
5462 7555 4.633565 CAGTAATGGCTTTCTCTCTTGGTC 59.366 45.833 0.00 0.00 0.00 4.02
5463 7556 3.795688 AATGGCTTTCTCTCTTGGTCA 57.204 42.857 0.00 0.00 0.00 4.02
5476 7569 4.856801 GGTCATGTGGGCGGCGAT 62.857 66.667 12.98 0.00 0.00 4.58
5477 7570 2.108157 GTCATGTGGGCGGCGATA 59.892 61.111 12.98 0.00 0.00 2.92
5480 7573 3.941188 ATGTGGGCGGCGATAGGG 61.941 66.667 12.98 0.00 0.00 3.53
5489 7582 3.686045 GCGATAGGGGGAGCGGAG 61.686 72.222 0.00 0.00 0.00 4.63
5490 7583 2.992114 CGATAGGGGGAGCGGAGG 60.992 72.222 0.00 0.00 0.00 4.30
5491 7584 2.604991 GATAGGGGGAGCGGAGGG 60.605 72.222 0.00 0.00 0.00 4.30
5492 7585 3.449126 ATAGGGGGAGCGGAGGGT 61.449 66.667 0.00 0.00 0.00 4.34
5493 7586 3.776016 ATAGGGGGAGCGGAGGGTG 62.776 68.421 0.00 0.00 0.00 4.61
5514 7607 0.528017 CTTGGCGCTCTCTGTCACTA 59.472 55.000 7.64 0.00 0.00 2.74
5526 7619 0.881796 TGTCACTAGCAGTGGAGACG 59.118 55.000 13.87 0.00 45.94 4.18
5527 7620 0.882474 GTCACTAGCAGTGGAGACGT 59.118 55.000 13.87 0.00 45.94 4.34
5529 7622 0.171455 CACTAGCAGTGGAGACGTCC 59.829 60.000 13.01 3.55 42.35 4.79
5554 7647 1.103803 CGGATCTGGAGTTTCGAGGA 58.896 55.000 0.00 0.00 0.00 3.71
5577 7670 1.581447 GGGAGTTGCCAAGCGAAAG 59.419 57.895 0.00 0.00 38.95 2.62
5623 7716 3.479269 CGTTTGCGGGCGTCTCTC 61.479 66.667 0.00 0.00 0.00 3.20
5659 7752 1.208052 CATTGTGGTGATCCTCTCCGT 59.792 52.381 0.00 0.00 32.93 4.69
5661 7754 0.541998 TGTGGTGATCCTCTCCGTGT 60.542 55.000 0.00 0.00 32.93 4.49
5666 7759 0.684479 TGATCCTCTCCGTGTCAGGG 60.684 60.000 5.13 5.13 0.00 4.45
5674 7767 2.989824 CGTGTCAGGGTCCCGAGT 60.990 66.667 0.99 0.00 0.00 4.18
5676 7769 1.906824 GTGTCAGGGTCCCGAGTGA 60.907 63.158 0.99 0.00 0.00 3.41
5700 7793 0.602905 CCTTGTTCGTGGTGGACTCC 60.603 60.000 0.00 0.00 0.00 3.85
5705 7798 3.991051 CGTGGTGGACTCCGCAGT 61.991 66.667 10.85 0.00 37.81 4.40
5713 7806 1.373497 GACTCCGCAGTGGTGACAG 60.373 63.158 9.11 0.00 44.46 3.51
5723 7816 3.395669 GGTGACAGTTATCGCCGC 58.604 61.111 0.00 0.00 39.40 6.53
5727 7820 2.052157 GTGACAGTTATCGCCGCTATC 58.948 52.381 0.00 0.00 0.00 2.08
5734 7827 0.965866 TATCGCCGCTATCCCTCCTG 60.966 60.000 0.00 0.00 0.00 3.86
5740 7833 3.139810 GCTATCCCTCCTGAGAGCA 57.860 57.895 3.03 0.00 46.29 4.26
5743 7836 2.028203 GCTATCCCTCCTGAGAGCATTC 60.028 54.545 3.03 0.00 46.29 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.952296 GCTGGATCCTCGATGCAAATT 59.048 47.619 14.23 0.00 39.69 1.82
54 55 1.005156 GGAGCTGGATCCTCGATGC 60.005 63.158 14.23 9.38 36.35 3.91
64 65 0.324943 GGTTGCTAAGTGGAGCTGGA 59.675 55.000 0.00 0.00 43.27 3.86
76 77 0.688487 GGTGGTGGTACTGGTTGCTA 59.312 55.000 0.00 0.00 0.00 3.49
77 78 1.349542 TGGTGGTGGTACTGGTTGCT 61.350 55.000 0.00 0.00 0.00 3.91
78 79 0.889186 CTGGTGGTGGTACTGGTTGC 60.889 60.000 0.00 0.00 0.00 4.17
85 86 0.037605 CCTCGTTCTGGTGGTGGTAC 60.038 60.000 0.00 0.00 0.00 3.34
123 124 1.380112 ACTCTGGTAGGGGAGCGAC 60.380 63.158 0.00 0.00 33.29 5.19
125 126 3.211288 CACTCTGGTAGGGGAGCG 58.789 66.667 0.00 0.00 33.29 5.03
134 135 1.462238 AGGTCAAGCCCACTCTGGT 60.462 57.895 0.00 0.00 35.17 4.00
141 142 0.251297 CATCAACCAGGTCAAGCCCA 60.251 55.000 0.00 0.00 38.26 5.36
165 166 2.422479 CACATGCATGAAGACTTCCCAG 59.578 50.000 32.75 1.77 0.00 4.45
167 168 1.133790 GCACATGCATGAAGACTTCCC 59.866 52.381 32.75 7.31 41.59 3.97
172 173 1.747709 AGAGGCACATGCATGAAGAC 58.252 50.000 32.75 24.54 44.36 3.01
189 190 2.093658 GGCAGGAACGATGGTCTTTAGA 60.094 50.000 0.00 0.00 0.00 2.10
204 205 1.064758 GGTACAATGGTGATGGCAGGA 60.065 52.381 0.00 0.00 0.00 3.86
220 229 4.806247 CACTTCAGATCGATTCAAGGGTAC 59.194 45.833 0.00 0.00 0.00 3.34
223 232 2.611292 GCACTTCAGATCGATTCAAGGG 59.389 50.000 0.00 4.66 0.00 3.95
242 251 1.375396 CGAGATTTGGTGTCGGGCA 60.375 57.895 0.00 0.00 39.71 5.36
281 290 0.710588 GGGGGAGAGGTTGGGATTTT 59.289 55.000 0.00 0.00 0.00 1.82
285 294 0.479589 ATTTGGGGGAGAGGTTGGGA 60.480 55.000 0.00 0.00 0.00 4.37
288 297 5.513267 GCTATACTATTTGGGGGAGAGGTTG 60.513 48.000 0.00 0.00 0.00 3.77
295 304 4.222333 TCCTGCTATACTATTTGGGGGA 57.778 45.455 0.00 0.00 0.00 4.81
296 305 5.501156 GAATCCTGCTATACTATTTGGGGG 58.499 45.833 0.00 0.00 0.00 5.40
304 313 3.195610 CGGCATGGAATCCTGCTATACTA 59.804 47.826 18.33 0.00 38.45 1.82
305 314 2.027745 CGGCATGGAATCCTGCTATACT 60.028 50.000 18.33 0.00 38.45 2.12
306 315 2.350522 CGGCATGGAATCCTGCTATAC 58.649 52.381 18.33 5.95 38.45 1.47
307 316 1.278985 CCGGCATGGAATCCTGCTATA 59.721 52.381 18.33 0.00 42.00 1.31
346 355 3.129287 CCCTCCTCAAATTCGTTCATTGG 59.871 47.826 0.00 0.00 0.00 3.16
349 358 3.721087 ACCCTCCTCAAATTCGTTCAT 57.279 42.857 0.00 0.00 0.00 2.57
360 369 1.613630 GAGGCTCCAACCCTCCTCA 60.614 63.158 2.15 0.00 43.42 3.86
396 405 2.204029 AGGGGAGGCGGTTTGGTA 60.204 61.111 0.00 0.00 0.00 3.25
400 409 0.838987 TCTTACAGGGGAGGCGGTTT 60.839 55.000 0.00 0.00 0.00 3.27
403 412 0.326927 TTTTCTTACAGGGGAGGCGG 59.673 55.000 0.00 0.00 0.00 6.13
407 416 5.875359 GTCAGTGTATTTTCTTACAGGGGAG 59.125 44.000 0.00 0.00 32.92 4.30
408 417 5.280317 GGTCAGTGTATTTTCTTACAGGGGA 60.280 44.000 0.00 0.00 32.92 4.81
412 421 7.819900 AGCTTAGGTCAGTGTATTTTCTTACAG 59.180 37.037 0.00 0.00 32.92 2.74
413 422 7.676947 AGCTTAGGTCAGTGTATTTTCTTACA 58.323 34.615 0.00 0.00 0.00 2.41
414 423 9.819267 ATAGCTTAGGTCAGTGTATTTTCTTAC 57.181 33.333 0.00 0.00 0.00 2.34
418 427 8.766151 GCTAATAGCTTAGGTCAGTGTATTTTC 58.234 37.037 4.79 0.00 38.45 2.29
419 428 7.715686 GGCTAATAGCTTAGGTCAGTGTATTTT 59.284 37.037 12.41 0.00 41.99 1.82
420 429 7.217906 GGCTAATAGCTTAGGTCAGTGTATTT 58.782 38.462 12.41 0.00 41.99 1.40
421 430 6.516860 CGGCTAATAGCTTAGGTCAGTGTATT 60.517 42.308 12.41 0.00 41.99 1.89
422 431 5.047943 CGGCTAATAGCTTAGGTCAGTGTAT 60.048 44.000 12.41 0.00 41.99 2.29
423 432 4.277672 CGGCTAATAGCTTAGGTCAGTGTA 59.722 45.833 12.41 0.00 41.99 2.90
424 433 3.068307 CGGCTAATAGCTTAGGTCAGTGT 59.932 47.826 12.41 0.00 41.99 3.55
425 434 3.318275 TCGGCTAATAGCTTAGGTCAGTG 59.682 47.826 12.41 0.00 41.99 3.66
426 435 3.563223 TCGGCTAATAGCTTAGGTCAGT 58.437 45.455 12.41 0.00 41.99 3.41
427 436 3.612955 GCTCGGCTAATAGCTTAGGTCAG 60.613 52.174 12.41 0.00 41.99 3.51
428 437 2.296471 GCTCGGCTAATAGCTTAGGTCA 59.704 50.000 12.41 0.00 41.99 4.02
429 438 2.352912 GGCTCGGCTAATAGCTTAGGTC 60.353 54.545 12.41 0.00 41.99 3.85
430 439 1.619332 GGCTCGGCTAATAGCTTAGGT 59.381 52.381 12.41 0.00 41.99 3.08
431 440 1.618837 TGGCTCGGCTAATAGCTTAGG 59.381 52.381 12.41 2.12 41.99 2.69
432 441 3.321497 CTTGGCTCGGCTAATAGCTTAG 58.679 50.000 12.41 10.49 41.99 2.18
433 442 2.037251 CCTTGGCTCGGCTAATAGCTTA 59.963 50.000 12.41 0.00 41.99 3.09
434 443 1.202698 CCTTGGCTCGGCTAATAGCTT 60.203 52.381 12.41 0.00 41.99 3.74
435 444 0.394565 CCTTGGCTCGGCTAATAGCT 59.605 55.000 12.41 0.00 41.99 3.32
436 445 0.393077 TCCTTGGCTCGGCTAATAGC 59.607 55.000 3.17 3.17 41.46 2.97
437 446 2.484889 GTTCCTTGGCTCGGCTAATAG 58.515 52.381 0.00 0.00 0.00 1.73
438 447 1.140252 GGTTCCTTGGCTCGGCTAATA 59.860 52.381 0.00 0.00 0.00 0.98
439 448 0.107165 GGTTCCTTGGCTCGGCTAAT 60.107 55.000 0.00 0.00 0.00 1.73
440 449 1.298667 GGTTCCTTGGCTCGGCTAA 59.701 57.895 0.00 0.00 0.00 3.09
441 450 2.666098 GGGTTCCTTGGCTCGGCTA 61.666 63.158 0.00 0.00 0.00 3.93
442 451 4.035102 GGGTTCCTTGGCTCGGCT 62.035 66.667 0.00 0.00 0.00 5.52
444 453 4.426313 GGGGGTTCCTTGGCTCGG 62.426 72.222 0.00 0.00 0.00 4.63
485 494 4.834453 CCTCTGCCTGCCGCTCAG 62.834 72.222 0.00 0.00 42.49 3.35
492 501 3.334054 AACCTCCCCTCTGCCTGC 61.334 66.667 0.00 0.00 0.00 4.85
493 502 1.277580 ATCAACCTCCCCTCTGCCTG 61.278 60.000 0.00 0.00 0.00 4.85
494 503 0.985490 GATCAACCTCCCCTCTGCCT 60.985 60.000 0.00 0.00 0.00 4.75
495 504 1.529309 GATCAACCTCCCCTCTGCC 59.471 63.158 0.00 0.00 0.00 4.85
496 505 1.274703 TGGATCAACCTCCCCTCTGC 61.275 60.000 0.00 0.00 39.86 4.26
497 506 0.543749 GTGGATCAACCTCCCCTCTG 59.456 60.000 0.00 0.00 39.86 3.35
498 507 0.978146 CGTGGATCAACCTCCCCTCT 60.978 60.000 0.00 0.00 39.86 3.69
526 646 3.049080 ATCCCCTCCAAGCTTCGGC 62.049 63.158 0.00 0.00 42.17 5.54
527 647 1.153086 CATCCCCTCCAAGCTTCGG 60.153 63.158 0.00 1.94 0.00 4.30
547 667 2.170607 CCGTTCAGGATGGTTAGGACAT 59.829 50.000 0.00 0.00 45.00 3.06
550 670 2.241281 TCCGTTCAGGATGGTTAGGA 57.759 50.000 0.00 0.00 45.98 2.94
561 681 0.601558 TCGTTCCCTCTTCCGTTCAG 59.398 55.000 0.00 0.00 0.00 3.02
562 682 0.601558 CTCGTTCCCTCTTCCGTTCA 59.398 55.000 0.00 0.00 0.00 3.18
577 697 6.311935 TGTTTAATATTGCTAGCGTTTCTCGT 59.688 34.615 10.77 0.00 42.13 4.18
578 698 6.701937 TGTTTAATATTGCTAGCGTTTCTCG 58.298 36.000 10.77 0.00 43.12 4.04
586 706 6.972901 GGTCAACCTTGTTTAATATTGCTAGC 59.027 38.462 8.10 8.10 0.00 3.42
588 708 6.094325 CCGGTCAACCTTGTTTAATATTGCTA 59.906 38.462 0.00 0.00 0.00 3.49
590 710 5.099575 CCGGTCAACCTTGTTTAATATTGC 58.900 41.667 0.00 0.00 0.00 3.56
605 725 9.717892 GATATTTTAGATTTCTTTCCGGTCAAC 57.282 33.333 0.00 0.00 0.00 3.18
641 764 8.768397 AGTGTGTCATATTACTCCCTTCATTTA 58.232 33.333 0.00 0.00 0.00 1.40
653 776 8.202137 ACCAGGTGTAATAGTGTGTCATATTAC 58.798 37.037 0.00 7.74 41.82 1.89
660 783 3.508762 CGACCAGGTGTAATAGTGTGTC 58.491 50.000 0.00 0.00 0.00 3.67
661 784 2.232941 CCGACCAGGTGTAATAGTGTGT 59.767 50.000 0.00 0.00 34.51 3.72
667 790 1.817881 CGGCCGACCAGGTGTAATA 59.182 57.895 24.07 0.00 43.70 0.98
676 799 4.728102 CGTAACAGCGGCCGACCA 62.728 66.667 33.48 5.13 34.57 4.02
714 837 1.442148 GTCCGGATACTCTGTGGGC 59.558 63.158 7.81 0.00 0.00 5.36
785 908 0.104120 TCTGTGTGTCGGTGAAGGTG 59.896 55.000 0.00 0.00 0.00 4.00
790 913 2.504274 GGGGTCTGTGTGTCGGTGA 61.504 63.158 0.00 0.00 0.00 4.02
1177 1343 0.465642 GCAAGGGGCGGCTAGTAAAT 60.466 55.000 9.56 0.00 0.00 1.40
1421 1607 6.432783 TGTTTTTCAACGATTCCTCCATACAT 59.567 34.615 0.00 0.00 35.40 2.29
1423 1609 6.148811 TCTGTTTTTCAACGATTCCTCCATAC 59.851 38.462 0.00 0.00 35.40 2.39
1424 1610 6.234920 TCTGTTTTTCAACGATTCCTCCATA 58.765 36.000 0.00 0.00 35.40 2.74
1425 1611 5.070001 TCTGTTTTTCAACGATTCCTCCAT 58.930 37.500 0.00 0.00 35.40 3.41
1426 1612 4.456535 TCTGTTTTTCAACGATTCCTCCA 58.543 39.130 0.00 0.00 35.40 3.86
1497 2032 6.378280 ACATGGAAAACTTGATCCTAATCACC 59.622 38.462 0.00 0.00 41.62 4.02
1517 2052 0.390124 AGCAAACAAGTGCCACATGG 59.610 50.000 4.95 0.00 46.14 3.66
1527 2062 2.388121 CTGCGGAGAAAAGCAAACAAG 58.612 47.619 0.00 0.00 43.31 3.16
1571 2106 3.670629 CTCGGGCCTCAGACCCTCT 62.671 68.421 0.84 0.00 46.04 3.69
1667 2202 3.539604 GAGATGACCTTGGACCATCTTG 58.460 50.000 20.54 0.00 44.81 3.02
1707 2242 6.069847 AGGTCTTATAAAAATGAACGGAGGGA 60.070 38.462 0.00 0.00 0.00 4.20
1709 2244 7.335924 TCAAGGTCTTATAAAAATGAACGGAGG 59.664 37.037 0.00 0.00 0.00 4.30
1710 2245 8.263940 TCAAGGTCTTATAAAAATGAACGGAG 57.736 34.615 0.00 0.00 0.00 4.63
1712 2247 8.726988 TCTTCAAGGTCTTATAAAAATGAACGG 58.273 33.333 0.00 0.00 0.00 4.44
1713 2248 9.543018 GTCTTCAAGGTCTTATAAAAATGAACG 57.457 33.333 0.00 0.00 0.00 3.95
1722 2257 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
1723 2258 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
1724 2259 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
1725 2260 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
1726 2261 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
1727 2262 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
1728 2263 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
1729 2264 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
1730 2265 6.147581 CACATTGTCTGAAATGTCTTCAAGG 58.852 40.000 12.25 0.00 45.47 3.61
1731 2266 5.628193 GCACATTGTCTGAAATGTCTTCAAG 59.372 40.000 12.25 5.42 45.47 3.02
1732 2267 5.067544 TGCACATTGTCTGAAATGTCTTCAA 59.932 36.000 12.25 0.00 45.47 2.69
1733 2268 4.579753 TGCACATTGTCTGAAATGTCTTCA 59.420 37.500 12.25 9.40 45.47 3.02
1734 2269 5.112220 TGCACATTGTCTGAAATGTCTTC 57.888 39.130 12.25 7.82 45.47 2.87
1735 2270 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
1736 2271 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
1737 2272 5.519566 TGTTTTGCACATTGTCTGAAATGTC 59.480 36.000 12.25 9.51 45.47 3.06
1739 2274 5.970140 TGTTTTGCACATTGTCTGAAATG 57.030 34.783 0.00 9.50 42.21 2.32
1740 2275 5.294060 GGTTGTTTTGCACATTGTCTGAAAT 59.706 36.000 0.00 0.00 34.43 2.17
1741 2276 4.629200 GGTTGTTTTGCACATTGTCTGAAA 59.371 37.500 0.00 0.00 34.43 2.69
1742 2277 4.081752 AGGTTGTTTTGCACATTGTCTGAA 60.082 37.500 0.00 0.00 34.43 3.02
1743 2278 3.446873 AGGTTGTTTTGCACATTGTCTGA 59.553 39.130 0.00 0.00 34.43 3.27
1744 2279 3.784338 AGGTTGTTTTGCACATTGTCTG 58.216 40.909 0.00 0.00 34.43 3.51
1745 2280 5.789643 ATAGGTTGTTTTGCACATTGTCT 57.210 34.783 0.00 0.00 34.43 3.41
1746 2281 6.843069 AAATAGGTTGTTTTGCACATTGTC 57.157 33.333 0.00 0.00 34.43 3.18
1747 2282 6.597280 ACAAAATAGGTTGTTTTGCACATTGT 59.403 30.769 10.29 0.00 45.70 2.71
1748 2283 6.906143 CACAAAATAGGTTGTTTTGCACATTG 59.094 34.615 10.29 0.00 45.70 2.82
1749 2284 6.597280 ACACAAAATAGGTTGTTTTGCACATT 59.403 30.769 10.29 0.00 45.70 2.71
1750 2285 6.112058 ACACAAAATAGGTTGTTTTGCACAT 58.888 32.000 10.29 0.00 45.70 3.21
1751 2286 5.482908 ACACAAAATAGGTTGTTTTGCACA 58.517 33.333 10.29 0.00 45.70 4.57
1752 2287 6.247176 CAACACAAAATAGGTTGTTTTGCAC 58.753 36.000 10.29 0.00 45.70 4.57
1753 2288 6.414408 CAACACAAAATAGGTTGTTTTGCA 57.586 33.333 10.29 0.00 45.70 4.08
1760 2295 6.196353 CGTTTCAGACAACACAAAATAGGTTG 59.804 38.462 0.00 0.00 45.52 3.77
1761 2296 6.094325 TCGTTTCAGACAACACAAAATAGGTT 59.906 34.615 0.00 0.00 0.00 3.50
1762 2297 5.587043 TCGTTTCAGACAACACAAAATAGGT 59.413 36.000 0.00 0.00 0.00 3.08
1763 2298 5.907391 GTCGTTTCAGACAACACAAAATAGG 59.093 40.000 0.00 0.00 40.65 2.57
1764 2299 6.715464 AGTCGTTTCAGACAACACAAAATAG 58.285 36.000 0.00 0.00 43.24 1.73
1765 2300 6.671614 AGTCGTTTCAGACAACACAAAATA 57.328 33.333 0.00 0.00 43.24 1.40
1766 2301 5.560966 AGTCGTTTCAGACAACACAAAAT 57.439 34.783 0.00 0.00 43.24 1.82
1767 2302 5.365403 AAGTCGTTTCAGACAACACAAAA 57.635 34.783 0.00 0.00 43.24 2.44
1768 2303 5.408909 TGTAAGTCGTTTCAGACAACACAAA 59.591 36.000 0.00 0.00 43.24 2.83
1769 2304 4.930405 TGTAAGTCGTTTCAGACAACACAA 59.070 37.500 0.00 0.00 43.24 3.33
1770 2305 4.496360 TGTAAGTCGTTTCAGACAACACA 58.504 39.130 0.00 0.00 43.24 3.72
1771 2306 5.459110 TTGTAAGTCGTTTCAGACAACAC 57.541 39.130 0.00 0.00 43.24 3.32
1772 2307 6.148150 ACTTTTGTAAGTCGTTTCAGACAACA 59.852 34.615 0.00 1.46 40.60 3.33
1773 2308 6.464834 CACTTTTGTAAGTCGTTTCAGACAAC 59.535 38.462 0.00 0.00 42.67 3.32
1774 2309 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
1775 2310 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
1776 2311 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
1777 2312 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
1778 2313 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
1779 2314 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
1780 2315 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
1781 2316 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
1782 2317 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
1783 2318 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
1784 2319 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
1785 2320 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
1786 2321 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
1787 2322 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
1788 2323 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
1789 2324 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
1790 2325 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
1791 2326 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
1792 2327 2.038164 GGTACTCCCTCCGTTCACTTTT 59.962 50.000 0.00 0.00 0.00 2.27
1793 2328 1.622312 GGTACTCCCTCCGTTCACTTT 59.378 52.381 0.00 0.00 0.00 2.66
1794 2329 1.264295 GGTACTCCCTCCGTTCACTT 58.736 55.000 0.00 0.00 0.00 3.16
1795 2330 0.113776 TGGTACTCCCTCCGTTCACT 59.886 55.000 0.00 0.00 0.00 3.41
1796 2331 0.971386 TTGGTACTCCCTCCGTTCAC 59.029 55.000 0.00 0.00 0.00 3.18
1797 2332 1.719529 TTTGGTACTCCCTCCGTTCA 58.280 50.000 0.00 0.00 0.00 3.18
1798 2333 3.345508 AATTTGGTACTCCCTCCGTTC 57.654 47.619 0.00 0.00 0.00 3.95
1799 2334 3.842436 ACTAATTTGGTACTCCCTCCGTT 59.158 43.478 0.00 0.00 0.00 4.44
1800 2335 3.197116 CACTAATTTGGTACTCCCTCCGT 59.803 47.826 0.00 0.00 0.00 4.69
1801 2336 3.431766 CCACTAATTTGGTACTCCCTCCG 60.432 52.174 0.00 0.00 0.00 4.63
1802 2337 3.778629 TCCACTAATTTGGTACTCCCTCC 59.221 47.826 0.00 0.00 37.93 4.30
1803 2338 4.470304 ACTCCACTAATTTGGTACTCCCTC 59.530 45.833 0.00 0.00 37.93 4.30
1804 2339 4.436079 ACTCCACTAATTTGGTACTCCCT 58.564 43.478 0.00 0.00 37.93 4.20
1805 2340 4.838904 ACTCCACTAATTTGGTACTCCC 57.161 45.455 0.00 0.00 37.93 4.30
1806 2341 6.541934 ACTACTCCACTAATTTGGTACTCC 57.458 41.667 0.00 0.00 37.93 3.85
1808 2343 9.886132 CAAATACTACTCCACTAATTTGGTACT 57.114 33.333 0.00 0.00 37.93 2.73
1809 2344 9.662947 ACAAATACTACTCCACTAATTTGGTAC 57.337 33.333 9.58 0.00 38.18 3.34
1811 2346 9.010029 CAACAAATACTACTCCACTAATTTGGT 57.990 33.333 9.58 1.33 38.18 3.67
1812 2347 7.968405 GCAACAAATACTACTCCACTAATTTGG 59.032 37.037 9.58 0.00 38.18 3.28
1813 2348 8.730680 AGCAACAAATACTACTCCACTAATTTG 58.269 33.333 0.00 0.00 39.21 2.32
1814 2349 8.863872 AGCAACAAATACTACTCCACTAATTT 57.136 30.769 0.00 0.00 0.00 1.82
1815 2350 9.601217 CTAGCAACAAATACTACTCCACTAATT 57.399 33.333 0.00 0.00 0.00 1.40
1816 2351 8.759782 ACTAGCAACAAATACTACTCCACTAAT 58.240 33.333 0.00 0.00 0.00 1.73
1817 2352 8.130671 ACTAGCAACAAATACTACTCCACTAA 57.869 34.615 0.00 0.00 0.00 2.24
1818 2353 7.713734 ACTAGCAACAAATACTACTCCACTA 57.286 36.000 0.00 0.00 0.00 2.74
1819 2354 6.607004 ACTAGCAACAAATACTACTCCACT 57.393 37.500 0.00 0.00 0.00 4.00
1820 2355 7.386848 TGAAACTAGCAACAAATACTACTCCAC 59.613 37.037 0.00 0.00 0.00 4.02
1821 2356 7.386848 GTGAAACTAGCAACAAATACTACTCCA 59.613 37.037 0.00 0.00 0.00 3.86
1822 2357 7.148457 GGTGAAACTAGCAACAAATACTACTCC 60.148 40.741 0.00 0.00 36.74 3.85
1823 2358 7.603024 AGGTGAAACTAGCAACAAATACTACTC 59.397 37.037 0.00 0.00 36.74 2.59
1824 2359 7.450903 AGGTGAAACTAGCAACAAATACTACT 58.549 34.615 0.00 0.00 36.74 2.57
1825 2360 7.668525 AGGTGAAACTAGCAACAAATACTAC 57.331 36.000 0.00 0.00 36.74 2.73
1826 2361 7.934665 TGAAGGTGAAACTAGCAACAAATACTA 59.065 33.333 0.00 0.00 36.74 1.82
1827 2362 6.770785 TGAAGGTGAAACTAGCAACAAATACT 59.229 34.615 0.00 0.00 36.74 2.12
1828 2363 6.966021 TGAAGGTGAAACTAGCAACAAATAC 58.034 36.000 0.00 0.00 36.74 1.89
1829 2364 6.770785 ACTGAAGGTGAAACTAGCAACAAATA 59.229 34.615 0.00 0.00 36.74 1.40
1830 2365 5.594317 ACTGAAGGTGAAACTAGCAACAAAT 59.406 36.000 0.00 0.00 36.74 2.32
1831 2366 4.947388 ACTGAAGGTGAAACTAGCAACAAA 59.053 37.500 0.00 0.00 36.74 2.83
1832 2367 4.523083 ACTGAAGGTGAAACTAGCAACAA 58.477 39.130 0.00 0.00 36.74 2.83
1833 2368 4.150897 ACTGAAGGTGAAACTAGCAACA 57.849 40.909 0.00 0.00 36.74 3.33
1834 2369 5.932303 TCATACTGAAGGTGAAACTAGCAAC 59.068 40.000 0.00 0.00 36.74 4.17
1835 2370 6.109156 TCATACTGAAGGTGAAACTAGCAA 57.891 37.500 0.00 0.00 36.74 3.91
1836 2371 5.738619 TCATACTGAAGGTGAAACTAGCA 57.261 39.130 0.00 0.00 36.74 3.49
1837 2372 5.932303 TGTTCATACTGAAGGTGAAACTAGC 59.068 40.000 0.00 0.00 37.00 3.42
1838 2373 8.553459 AATGTTCATACTGAAGGTGAAACTAG 57.447 34.615 0.00 0.00 37.00 2.57
1839 2374 9.431887 GTAATGTTCATACTGAAGGTGAAACTA 57.568 33.333 3.06 0.00 37.00 2.24
1856 2417 9.613428 CTGGATGGAACTAATTAGTAATGTTCA 57.387 33.333 18.31 8.35 38.82 3.18
1933 2504 3.392616 ACTGAACTTGTTCTCACCCATCT 59.607 43.478 13.65 0.00 0.00 2.90
1980 2617 2.138179 GCAATGCTGGCCCCATCAT 61.138 57.895 0.00 0.00 34.71 2.45
1988 2625 1.271656 GATTATGGGAGCAATGCTGGC 59.728 52.381 14.48 0.00 39.88 4.85
1989 2626 2.589720 TGATTATGGGAGCAATGCTGG 58.410 47.619 14.48 0.00 39.88 4.85
2033 2680 2.257034 CTGTCGCCCGTAACTTTAGTC 58.743 52.381 0.00 0.00 0.00 2.59
2037 2684 2.802247 GTTTACTGTCGCCCGTAACTTT 59.198 45.455 0.00 0.00 0.00 2.66
2091 2752 4.760204 ACCCTCGGTTTGAATTGACTAAAG 59.240 41.667 0.00 0.00 27.29 1.85
2093 2754 4.360951 ACCCTCGGTTTGAATTGACTAA 57.639 40.909 0.00 0.00 27.29 2.24
2198 2906 3.923017 GGCAACAAGATGTTAGCAAGT 57.077 42.857 14.74 0.00 38.77 3.16
2235 3007 6.650807 TGACTAAAAAGAAATCGCAGAGACAT 59.349 34.615 0.00 0.00 43.63 3.06
2244 3016 5.942872 AGCCATGTGACTAAAAAGAAATCG 58.057 37.500 0.00 0.00 0.00 3.34
2414 3203 1.252904 CCACTGCCATTCAACCCCTG 61.253 60.000 0.00 0.00 0.00 4.45
2425 3214 0.178975 AATTCGTTTCCCCACTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
2445 3234 3.971032 AACTGAAGAAAGAAACCTGCG 57.029 42.857 0.00 0.00 0.00 5.18
2490 3301 6.368791 GGGTGGTCTTCAAAATTGAAATAAGC 59.631 38.462 9.63 8.29 45.61 3.09
2505 3316 2.062971 ATGCATCATGGGTGGTCTTC 57.937 50.000 0.00 0.00 0.00 2.87
2566 3380 1.221021 GGCCTGAAGTAAGGACCCG 59.779 63.158 0.00 0.00 39.79 5.28
2583 3416 1.355796 TTTCTATGAACGCGTGCGGG 61.356 55.000 14.98 10.80 44.69 6.13
2675 3509 2.675844 CCGGATCACGCATTTTCTTGTA 59.324 45.455 0.00 0.00 42.52 2.41
2676 3510 1.468520 CCGGATCACGCATTTTCTTGT 59.531 47.619 0.00 0.00 42.52 3.16
2679 3513 1.821216 AACCGGATCACGCATTTTCT 58.179 45.000 9.46 0.00 42.52 2.52
2748 3590 2.833631 AAGGAGTAACCACTGGAACG 57.166 50.000 0.71 0.00 42.04 3.95
2760 3602 6.703607 CGACGGTTACTAGATCTAAAGGAGTA 59.296 42.308 3.57 1.11 0.00 2.59
2761 3603 5.526846 CGACGGTTACTAGATCTAAAGGAGT 59.473 44.000 3.57 2.12 0.00 3.85
2781 3623 1.511887 CATCTTTTTGGCCGCGACG 60.512 57.895 8.23 0.00 0.00 5.12
2784 3626 0.097674 CTCTCATCTTTTTGGCCGCG 59.902 55.000 0.00 0.00 0.00 6.46
2897 3741 6.465084 AGTGATAGTACTTGACAAAAGGGAC 58.535 40.000 0.00 0.00 0.00 4.46
2958 3811 7.290061 AGCTGCAGAATACCCATAATTCTTAA 58.710 34.615 20.43 0.00 40.81 1.85
2965 3818 2.777114 TGGAGCTGCAGAATACCCATAA 59.223 45.455 20.43 0.00 0.00 1.90
3136 4008 7.917505 GCAGTCATAACCTTTGGAAAGATAATG 59.082 37.037 0.47 2.17 38.28 1.90
3137 4009 7.615365 TGCAGTCATAACCTTTGGAAAGATAAT 59.385 33.333 0.47 0.00 38.28 1.28
3269 4141 9.713713 GGAACTTCTCTTTACTGTTAGAATTCT 57.286 33.333 13.56 13.56 0.00 2.40
3320 4199 6.538021 CACAATCTGTCCTCCTATTCAAAGAG 59.462 42.308 0.00 0.00 0.00 2.85
3433 4328 5.521906 TCTGTAACAGGATGAGATACTGC 57.478 43.478 0.00 0.00 45.43 4.40
3464 4359 6.983050 GCCAATGCTTTTGTGCACAACAATA 61.983 40.000 31.17 18.06 46.33 1.90
3468 4363 1.003652 GCCAATGCTTTTGTGCACAAC 60.004 47.619 31.17 20.11 46.33 3.32
3469 4364 1.297664 GCCAATGCTTTTGTGCACAA 58.702 45.000 27.96 27.96 46.33 3.33
3471 4366 1.854664 CGCCAATGCTTTTGTGCAC 59.145 52.632 10.75 10.75 46.33 4.57
3473 4368 1.293267 ATGCGCCAATGCTTTTGTGC 61.293 50.000 4.18 13.14 35.25 4.57
3474 4369 0.440758 CATGCGCCAATGCTTTTGTG 59.559 50.000 4.18 0.00 35.36 3.33
3484 4379 1.317613 AAACAGAACTCATGCGCCAA 58.682 45.000 4.18 0.00 0.00 4.52
3489 4411 7.806690 TGATACTACAAAAACAGAACTCATGC 58.193 34.615 0.00 0.00 0.00 4.06
3510 4432 9.112725 CATTACCATGACTGAATCAGTTTGATA 57.887 33.333 17.79 7.24 45.44 2.15
3556 4479 7.761409 TGAAAACTATCATATGCCAACAGAAC 58.239 34.615 0.00 0.00 0.00 3.01
3564 4487 8.355169 ACAATGTCATGAAAACTATCATATGCC 58.645 33.333 0.00 0.00 37.96 4.40
3607 4557 8.905660 ATTACAGGATGATGAGAAATGAAGAG 57.094 34.615 0.00 0.00 39.69 2.85
3612 4562 7.172875 GTCAGGATTACAGGATGATGAGAAATG 59.827 40.741 0.00 0.00 39.69 2.32
3624 4574 4.039973 ACACGAAAAGTCAGGATTACAGGA 59.960 41.667 0.00 0.00 0.00 3.86
3671 4635 1.243902 TTGCCACATCGTTTCTTCCC 58.756 50.000 0.00 0.00 0.00 3.97
3675 4639 1.888512 AGCATTTGCCACATCGTTTCT 59.111 42.857 0.00 0.00 43.38 2.52
3739 4703 4.461081 ACCTATGCTCGTCATATTCCTCTC 59.539 45.833 1.79 0.00 37.07 3.20
3818 4782 6.237901 TCCTCACTGCACTACATAACAAAAT 58.762 36.000 0.00 0.00 0.00 1.82
3840 4805 1.944676 CGCTGCCGTACGAGATTCC 60.945 63.158 18.76 0.00 0.00 3.01
3885 4850 1.686800 ATTGCCAACATGAGGGGGC 60.687 57.895 0.00 7.22 46.58 5.80
4005 4976 6.646240 CAGGCAAGCACAATTTATAACACTTT 59.354 34.615 0.00 0.00 0.00 2.66
4042 5032 3.881688 CTGCAGAAAGGAGGTCCATAATG 59.118 47.826 8.42 0.00 38.89 1.90
4066 5059 1.938625 GCTCATCCAAGCTCTCTGAC 58.061 55.000 0.00 0.00 39.27 3.51
4121 5114 2.347755 GGTTTACATTCGCCTTCTCGTC 59.652 50.000 0.00 0.00 0.00 4.20
4170 5176 0.473886 AAGGGGGACACAGTACTGCT 60.474 55.000 22.90 8.10 0.00 4.24
4183 5189 0.322906 GCTCACTTGAAGGAAGGGGG 60.323 60.000 0.00 0.00 38.82 5.40
4219 5320 6.966534 ACTTATAAATTCCCATCTGCAAGG 57.033 37.500 0.00 0.00 0.00 3.61
4265 5384 7.676004 TGAAATAGTGGTAAGTGAGATGTGAA 58.324 34.615 0.00 0.00 0.00 3.18
4266 5385 7.239763 TGAAATAGTGGTAAGTGAGATGTGA 57.760 36.000 0.00 0.00 0.00 3.58
4367 5487 3.960102 AGACCTTCCATCTGACTGATCTC 59.040 47.826 0.00 0.00 32.05 2.75
4549 5731 2.951642 CAGCCTCAGAACCTGAAACAAA 59.048 45.455 0.00 0.00 40.18 2.83
4550 5732 2.575532 CAGCCTCAGAACCTGAAACAA 58.424 47.619 0.00 0.00 40.18 2.83
4648 5831 2.134287 GGACGATGGCCAGCCTCTA 61.134 63.158 16.93 0.00 36.94 2.43
4803 5987 1.218316 GACCTGTGTAAGCCTCCCG 59.782 63.158 0.00 0.00 0.00 5.14
4805 5989 0.389948 CGTGACCTGTGTAAGCCTCC 60.390 60.000 0.00 0.00 0.00 4.30
4812 5996 4.367023 GCCCGCGTGACCTGTGTA 62.367 66.667 4.92 0.00 0.00 2.90
4852 6050 1.036707 TGCAAACCCCGGAAGAAAAG 58.963 50.000 0.73 0.00 0.00 2.27
4906 6104 3.975168 AGTACTTAGAACGCCCAACAT 57.025 42.857 0.00 0.00 0.00 2.71
4908 6106 3.185797 CACAAGTACTTAGAACGCCCAAC 59.814 47.826 8.04 0.00 0.00 3.77
4919 6117 7.065324 CCTGTTGTCAAAACTCACAAGTACTTA 59.935 37.037 8.04 0.00 33.48 2.24
4920 6118 6.128007 CCTGTTGTCAAAACTCACAAGTACTT 60.128 38.462 1.12 1.12 33.48 2.24
4921 6119 5.354234 CCTGTTGTCAAAACTCACAAGTACT 59.646 40.000 0.00 0.00 33.48 2.73
4922 6120 5.448632 CCCTGTTGTCAAAACTCACAAGTAC 60.449 44.000 0.00 0.00 33.48 2.73
4935 6133 4.919774 ATATACACACCCCTGTTGTCAA 57.080 40.909 0.00 0.00 0.00 3.18
4947 6145 5.539582 TTTGAACGGCTGAATATACACAC 57.460 39.130 0.00 0.00 0.00 3.82
4948 6146 9.203421 CTATATTTGAACGGCTGAATATACACA 57.797 33.333 0.00 0.00 0.00 3.72
4974 6172 2.946990 CTCTCTCTCCTCGTAAGGTTCC 59.053 54.545 0.00 0.00 43.82 3.62
4986 6184 3.876320 GGTGCATCATTTTCTCTCTCTCC 59.124 47.826 0.00 0.00 0.00 3.71
4991 6189 1.064654 GCCGGTGCATCATTTTCTCTC 59.935 52.381 1.90 0.00 37.47 3.20
5009 6207 3.431486 GCCTAGATATATGGACTGCTGCC 60.431 52.174 0.00 0.00 0.00 4.85
5014 6212 4.439426 GCTCGTGCCTAGATATATGGACTG 60.439 50.000 0.00 0.00 0.00 3.51
5083 6290 5.203370 GCAATTTGCGACTCAGAATATCAG 58.797 41.667 5.49 0.00 31.71 2.90
5127 6335 1.412710 GCTGGTTCATCATCTCCCGTA 59.587 52.381 0.00 0.00 0.00 4.02
5128 6336 0.179000 GCTGGTTCATCATCTCCCGT 59.821 55.000 0.00 0.00 0.00 5.28
5129 6337 0.533755 GGCTGGTTCATCATCTCCCG 60.534 60.000 0.00 0.00 0.00 5.14
5150 6362 0.455005 GCTTGCTTGCTTGGAGGATC 59.545 55.000 0.00 0.00 0.00 3.36
5219 6443 0.403271 GCCTCATGCCATCTGGGTAT 59.597 55.000 0.00 0.00 43.58 2.73
5222 6446 1.528542 CTGCCTCATGCCATCTGGG 60.529 63.158 0.00 0.00 40.16 4.45
5236 6460 1.801178 GTGTGTTTGTAGCTCTCTGCC 59.199 52.381 0.00 0.00 44.23 4.85
5276 6558 3.075005 TACCACCTGCCCGAGCTC 61.075 66.667 2.73 2.73 40.80 4.09
5348 6637 1.192980 CCTTTTTCAATTGCAGTGCGC 59.807 47.619 11.20 0.00 42.89 6.09
5393 6683 6.406624 CCAACCACGTAGACCTCTAATATGTT 60.407 42.308 0.00 0.00 0.00 2.71
5409 7499 2.113139 CCCAAGAGCCAACCACGT 59.887 61.111 0.00 0.00 0.00 4.49
5426 7516 3.869473 TTACTGTCACCGTGCCCGC 62.869 63.158 0.00 0.00 0.00 6.13
5460 7553 1.956170 CTATCGCCGCCCACATGAC 60.956 63.158 0.00 0.00 0.00 3.06
5462 7555 2.666190 CCTATCGCCGCCCACATG 60.666 66.667 0.00 0.00 0.00 3.21
5463 7556 3.941188 CCCTATCGCCGCCCACAT 61.941 66.667 0.00 0.00 0.00 3.21
5475 7568 3.449126 ACCCTCCGCTCCCCCTAT 61.449 66.667 0.00 0.00 0.00 2.57
5476 7569 4.475444 CACCCTCCGCTCCCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
5481 7574 4.785453 CAAGCCACCCTCCGCTCC 62.785 72.222 0.00 0.00 33.09 4.70
5482 7575 4.785453 CCAAGCCACCCTCCGCTC 62.785 72.222 0.00 0.00 33.09 5.03
5495 7588 0.528017 TAGTGACAGAGAGCGCCAAG 59.472 55.000 2.29 0.00 0.00 3.61
5496 7589 0.528017 CTAGTGACAGAGAGCGCCAA 59.472 55.000 2.29 0.00 0.00 4.52
5497 7590 1.938657 GCTAGTGACAGAGAGCGCCA 61.939 60.000 2.29 0.00 0.00 5.69
5514 7607 1.251527 ATTCGGACGTCTCCACTGCT 61.252 55.000 16.46 0.00 36.12 4.24
5529 7622 2.535984 CGAAACTCCAGATCCGAATTCG 59.464 50.000 20.92 20.92 39.44 3.34
5530 7623 3.782046 TCGAAACTCCAGATCCGAATTC 58.218 45.455 0.00 0.00 0.00 2.17
5531 7624 3.430929 CCTCGAAACTCCAGATCCGAATT 60.431 47.826 0.00 0.00 0.00 2.17
5534 7627 1.103803 CCTCGAAACTCCAGATCCGA 58.896 55.000 0.00 0.00 0.00 4.55
5548 7641 1.910580 GCAACTCCCCCATTCCTCGA 61.911 60.000 0.00 0.00 0.00 4.04
5549 7642 1.452108 GCAACTCCCCCATTCCTCG 60.452 63.158 0.00 0.00 0.00 4.63
5554 7647 1.610379 GCTTGGCAACTCCCCCATT 60.610 57.895 0.00 0.00 37.61 3.16
5581 7674 2.447250 CGTCTTCAGCGATAAAGCGTA 58.553 47.619 0.00 0.00 43.00 4.42
5582 7675 1.269166 CGTCTTCAGCGATAAAGCGT 58.731 50.000 0.00 0.00 43.00 5.07
5607 7700 2.048127 AGAGAGACGCCCGCAAAC 60.048 61.111 0.00 0.00 0.00 2.93
5608 7701 1.816863 AAGAGAGAGACGCCCGCAAA 61.817 55.000 0.00 0.00 0.00 3.68
5610 7703 2.676822 AAGAGAGAGACGCCCGCA 60.677 61.111 0.00 0.00 0.00 5.69
5611 7704 1.939769 AAGAAGAGAGAGACGCCCGC 61.940 60.000 0.00 0.00 0.00 6.13
5618 7711 7.039152 ACAATGATGTCTTCAAGAAGAGAGAGA 60.039 37.037 12.50 1.31 46.93 3.10
5620 7713 6.872547 CACAATGATGTCTTCAAGAAGAGAGA 59.127 38.462 12.50 3.85 46.93 3.10
5623 7716 5.704515 ACCACAATGATGTCTTCAAGAAGAG 59.295 40.000 12.50 2.72 46.93 2.85
5659 7752 0.761323 TTTCACTCGGGACCCTGACA 60.761 55.000 9.41 0.00 0.00 3.58
5661 7754 1.133363 TTTTTCACTCGGGACCCTGA 58.867 50.000 9.41 2.53 0.00 3.86
5666 7759 2.294979 ACAAGGTTTTTCACTCGGGAC 58.705 47.619 0.00 0.00 0.00 4.46
5674 7767 2.164624 CCACCACGAACAAGGTTTTTCA 59.835 45.455 0.00 0.00 35.52 2.69
5676 7769 2.164827 GTCCACCACGAACAAGGTTTTT 59.835 45.455 0.00 0.00 35.52 1.94
5700 7793 0.992072 CGATAACTGTCACCACTGCG 59.008 55.000 0.00 0.00 0.00 5.18
5705 7798 1.447140 GCGGCGATAACTGTCACCA 60.447 57.895 12.98 0.00 0.00 4.17
5713 7806 0.108756 GGAGGGATAGCGGCGATAAC 60.109 60.000 12.98 7.68 0.00 1.89
5723 7816 3.509442 AGAATGCTCTCAGGAGGGATAG 58.491 50.000 0.00 0.00 39.80 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.