Multiple sequence alignment - TraesCS3A01G444400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G444400 chr3A 100.000 2321 0 0 1 2321 686129056 686126736 0.000000e+00 4287.0
1 TraesCS3A01G444400 chr3A 95.018 562 24 4 1701 2259 512874529 512873969 0.000000e+00 880.0
2 TraesCS3A01G444400 chr3A 80.135 594 99 14 1 586 56976890 56976308 2.130000e-115 425.0
3 TraesCS3A01G444400 chr2A 96.383 553 19 1 1701 2253 332039826 332040377 0.000000e+00 909.0
4 TraesCS3A01G444400 chr2A 95.512 557 25 0 1700 2256 475815615 475815059 0.000000e+00 891.0
5 TraesCS3A01G444400 chr2A 98.936 94 0 1 1522 1615 41474164 41474256 1.430000e-37 167.0
6 TraesCS3A01G444400 chr2A 96.970 99 1 2 1521 1619 539588991 539588895 5.130000e-37 165.0
7 TraesCS3A01G444400 chr7A 95.871 557 23 0 1701 2257 561804633 561805189 0.000000e+00 902.0
8 TraesCS3A01G444400 chr7A 95.504 556 25 0 1701 2256 504851412 504850857 0.000000e+00 889.0
9 TraesCS3A01G444400 chr7A 86.854 426 52 4 1 425 169960835 169960413 7.510000e-130 473.0
10 TraesCS3A01G444400 chr7A 97.872 94 1 1 1522 1615 213151265 213151357 6.640000e-36 161.0
11 TraesCS3A01G444400 chr1A 94.921 571 29 0 1695 2265 291976990 291976420 0.000000e+00 894.0
12 TraesCS3A01G444400 chr1A 95.332 557 26 0 1700 2256 121875950 121875394 0.000000e+00 885.0
13 TraesCS3A01G444400 chr1A 87.709 659 73 7 1 654 584406650 584405995 0.000000e+00 761.0
14 TraesCS3A01G444400 chr1A 97.917 96 2 0 1515 1610 409786911 409787006 1.430000e-37 167.0
15 TraesCS3A01G444400 chr1D 94.964 556 28 0 1701 2256 250741386 250740831 0.000000e+00 872.0
16 TraesCS3A01G444400 chr5B 95.118 553 26 1 1701 2253 318172800 318173351 0.000000e+00 870.0
17 TraesCS3A01G444400 chr3B 90.649 663 44 12 707 1362 726471075 726470424 0.000000e+00 865.0
18 TraesCS3A01G444400 chr3B 89.474 665 43 17 707 1362 726748212 726747566 0.000000e+00 815.0
19 TraesCS3A01G444400 chr3B 87.313 134 5 5 781 908 727132912 727132785 2.400000e-30 143.0
20 TraesCS3A01G444400 chr3B 100.000 31 0 0 676 706 726471147 726471117 8.960000e-05 58.4
21 TraesCS3A01G444400 chr3D 89.571 652 35 9 707 1338 548535579 548534941 0.000000e+00 797.0
22 TraesCS3A01G444400 chr3D 93.077 130 8 1 1394 1523 548534848 548534720 3.040000e-44 189.0
23 TraesCS3A01G444400 chr3D 96.939 98 2 1 1522 1619 129678089 129677993 1.850000e-36 163.0
24 TraesCS3A01G444400 chr1B 84.441 662 81 17 1 654 534655350 534655997 1.170000e-177 632.0
25 TraesCS3A01G444400 chr6A 82.522 452 66 5 213 653 426167013 426167462 3.620000e-103 385.0
26 TraesCS3A01G444400 chr4B 95.000 100 5 0 1511 1610 538950470 538950569 8.590000e-35 158.0
27 TraesCS3A01G444400 chr5D 94.949 99 3 2 1521 1619 210057979 210057883 1.110000e-33 154.0
28 TraesCS3A01G444400 chr6B 91.818 110 6 3 1508 1616 65452488 65452595 1.440000e-32 150.0
29 TraesCS3A01G444400 chr4D 90.991 111 6 3 1496 1606 99160546 99160652 1.860000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G444400 chr3A 686126736 686129056 2320 True 4287.0 4287 100.0000 1 2321 1 chr3A.!!$R3 2320
1 TraesCS3A01G444400 chr3A 512873969 512874529 560 True 880.0 880 95.0180 1701 2259 1 chr3A.!!$R2 558
2 TraesCS3A01G444400 chr3A 56976308 56976890 582 True 425.0 425 80.1350 1 586 1 chr3A.!!$R1 585
3 TraesCS3A01G444400 chr2A 332039826 332040377 551 False 909.0 909 96.3830 1701 2253 1 chr2A.!!$F2 552
4 TraesCS3A01G444400 chr2A 475815059 475815615 556 True 891.0 891 95.5120 1700 2256 1 chr2A.!!$R1 556
5 TraesCS3A01G444400 chr7A 561804633 561805189 556 False 902.0 902 95.8710 1701 2257 1 chr7A.!!$F2 556
6 TraesCS3A01G444400 chr7A 504850857 504851412 555 True 889.0 889 95.5040 1701 2256 1 chr7A.!!$R2 555
7 TraesCS3A01G444400 chr1A 291976420 291976990 570 True 894.0 894 94.9210 1695 2265 1 chr1A.!!$R2 570
8 TraesCS3A01G444400 chr1A 121875394 121875950 556 True 885.0 885 95.3320 1700 2256 1 chr1A.!!$R1 556
9 TraesCS3A01G444400 chr1A 584405995 584406650 655 True 761.0 761 87.7090 1 654 1 chr1A.!!$R3 653
10 TraesCS3A01G444400 chr1D 250740831 250741386 555 True 872.0 872 94.9640 1701 2256 1 chr1D.!!$R1 555
11 TraesCS3A01G444400 chr5B 318172800 318173351 551 False 870.0 870 95.1180 1701 2253 1 chr5B.!!$F1 552
12 TraesCS3A01G444400 chr3B 726747566 726748212 646 True 815.0 815 89.4740 707 1362 1 chr3B.!!$R1 655
13 TraesCS3A01G444400 chr3B 726470424 726471147 723 True 461.7 865 95.3245 676 1362 2 chr3B.!!$R3 686
14 TraesCS3A01G444400 chr3D 548534720 548535579 859 True 493.0 797 91.3240 707 1523 2 chr3D.!!$R2 816
15 TraesCS3A01G444400 chr1B 534655350 534655997 647 False 632.0 632 84.4410 1 654 1 chr1B.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 211 0.03601 CTGGGATCGGCTGAACAACT 60.036 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1508 0.179103 CCGGGGTGGAACGTGTATAC 60.179 60.0 0.0 0.0 42.0 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.507324 GACCGTGAGCGAGAAGGC 60.507 66.667 0.00 0.00 41.33 4.35
54 56 1.719378 ACAAGAGAGAAGGAGGAGGGA 59.281 52.381 0.00 0.00 0.00 4.20
68 70 1.759459 GAGGGATCCCAGGCCGTAAG 61.759 65.000 32.69 0.00 38.92 2.34
147 149 1.493311 GAACGAGACAGCTTTGCGG 59.507 57.895 0.00 0.00 0.00 5.69
163 165 4.200283 GGGAGTCGAGCTGAGCGG 62.200 72.222 0.00 0.00 0.00 5.52
168 170 2.048222 TCGAGCTGAGCGGGTTTG 60.048 61.111 0.00 0.00 0.00 2.93
198 200 2.154462 AGACAAACAAAGCTGGGATCG 58.846 47.619 0.00 0.00 0.00 3.69
208 210 1.648467 GCTGGGATCGGCTGAACAAC 61.648 60.000 0.00 0.00 41.88 3.32
209 211 0.036010 CTGGGATCGGCTGAACAACT 60.036 55.000 0.00 0.00 0.00 3.16
226 228 6.864165 TGAACAACTGGAGTTTTTAACAACAC 59.136 34.615 7.22 0.74 35.83 3.32
237 239 9.744468 GAGTTTTTAACAACACCACATTTATCT 57.256 29.630 7.22 0.00 0.00 1.98
243 245 6.959639 ACAACACCACATTTATCTTTGTCT 57.040 33.333 0.00 0.00 0.00 3.41
273 276 3.026707 TGGACGTTCCAGGATATCAGA 57.973 47.619 4.83 0.00 42.67 3.27
290 293 1.201181 CAGACGGAGAGACAGAACAGG 59.799 57.143 0.00 0.00 0.00 4.00
291 294 1.074084 AGACGGAGAGACAGAACAGGA 59.926 52.381 0.00 0.00 0.00 3.86
293 296 1.074084 ACGGAGAGACAGAACAGGAGA 59.926 52.381 0.00 0.00 0.00 3.71
314 317 3.799432 ACTACCCATTACAACAGCCAA 57.201 42.857 0.00 0.00 0.00 4.52
329 332 2.214216 CCAACACCCGGACAGGAGA 61.214 63.158 0.73 0.00 45.00 3.71
348 351 1.153823 GGCGAGCACTACGACACAT 60.154 57.895 0.00 0.00 38.75 3.21
350 353 0.456142 GCGAGCACTACGACACATGA 60.456 55.000 0.00 0.00 0.00 3.07
351 354 1.539341 CGAGCACTACGACACATGAG 58.461 55.000 0.00 0.00 0.00 2.90
355 358 3.987868 GAGCACTACGACACATGAGAAAA 59.012 43.478 0.00 0.00 0.00 2.29
374 377 6.322931 AGAAAAAGGGAAAGGATACAACCAT 58.677 36.000 0.00 0.00 41.41 3.55
381 384 0.908910 AGGATACAACCATCCACGCA 59.091 50.000 5.02 0.00 46.04 5.24
388 391 0.244450 AACCATCCACGCAAATGCAG 59.756 50.000 6.18 1.33 42.21 4.41
395 398 1.135972 CCACGCAAATGCAGACTACAC 60.136 52.381 6.18 0.00 42.21 2.90
400 403 2.341257 CAAATGCAGACTACACGAGCT 58.659 47.619 0.00 0.00 0.00 4.09
415 418 1.226686 GAGCTACATGCATGGAGGCG 61.227 60.000 34.67 15.72 45.94 5.52
488 494 2.854777 CAGAAGACCGAGCTAAACATCG 59.145 50.000 0.00 0.00 38.65 3.84
491 497 1.189403 GACCGAGCTAAACATCGTCG 58.811 55.000 0.00 0.00 37.23 5.12
492 498 0.524862 ACCGAGCTAAACATCGTCGT 59.475 50.000 0.00 0.00 37.23 4.34
496 502 0.989890 AGCTAAACATCGTCGTTCGC 59.010 50.000 0.00 0.00 39.67 4.70
497 503 0.313233 GCTAAACATCGTCGTTCGCG 60.313 55.000 0.00 0.00 42.98 5.87
581 587 2.583593 GCGATCACCGAGTCCAGC 60.584 66.667 0.00 0.00 41.76 4.85
586 592 3.699894 CACCGAGTCCAGCAGCCT 61.700 66.667 0.00 0.00 0.00 4.58
590 596 1.112315 CCGAGTCCAGCAGCCTATCT 61.112 60.000 0.00 0.00 0.00 1.98
602 608 3.474600 CAGCCTATCTTTCATCACCCTG 58.525 50.000 0.00 0.00 0.00 4.45
611 617 0.615331 TCATCACCCTGGTCTTGAGC 59.385 55.000 0.00 0.00 0.00 4.26
613 619 0.842030 ATCACCCTGGTCTTGAGCCA 60.842 55.000 0.00 0.00 34.42 4.75
626 632 3.672295 GAGCCAGGGAGAACAGCCG 62.672 68.421 0.00 0.00 0.00 5.52
639 645 1.821332 CAGCCGGAAAGAGCATCCC 60.821 63.158 5.05 0.00 33.66 3.85
648 654 0.540923 AAGAGCATCCCTGAGAGCAC 59.459 55.000 0.00 0.00 33.66 4.40
671 677 9.559958 GCACGCAGCTTATATTATATGAATTTT 57.440 29.630 0.00 0.00 41.15 1.82
723 770 8.253113 ACAGTGGGATTTGAAAATAAAGCTATG 58.747 33.333 0.00 0.00 0.00 2.23
752 802 9.921637 TTACGGAAATTTCTTATCTGCAAAAAT 57.078 25.926 17.42 0.00 0.00 1.82
806 856 3.751479 TCTGTTGCTCACACATACTGT 57.249 42.857 0.00 0.00 0.00 3.55
860 910 3.067461 ACGGAGACAGAGCTCATACATTC 59.933 47.826 17.77 5.54 36.62 2.67
873 923 1.279025 TACATTCCTCCCCTGCACCC 61.279 60.000 0.00 0.00 0.00 4.61
955 1014 2.731691 ATCTCACCACACCGCACACC 62.732 60.000 0.00 0.00 0.00 4.16
1119 1197 2.353607 GGCTACGAGATGACCGCG 60.354 66.667 0.00 0.00 43.81 6.46
1326 1407 2.507944 CAGGGGCTCTGATTCCCG 59.492 66.667 9.31 2.88 46.18 5.14
1384 1504 2.808958 AACGCATACGCACCGCATC 61.809 57.895 0.00 0.00 45.53 3.91
1385 1505 4.000557 CGCATACGCACCGCATCC 62.001 66.667 0.00 0.00 38.40 3.51
1387 1507 2.468670 GCATACGCACCGCATCCAA 61.469 57.895 0.00 0.00 38.36 3.53
1388 1508 1.643292 CATACGCACCGCATCCAAG 59.357 57.895 0.00 0.00 0.00 3.61
1389 1509 1.089481 CATACGCACCGCATCCAAGT 61.089 55.000 0.00 0.00 0.00 3.16
1390 1510 0.462375 ATACGCACCGCATCCAAGTA 59.538 50.000 0.00 0.00 0.00 2.24
1391 1511 0.462375 TACGCACCGCATCCAAGTAT 59.538 50.000 0.00 0.00 0.00 2.12
1392 1512 0.462375 ACGCACCGCATCCAAGTATA 59.538 50.000 0.00 0.00 0.00 1.47
1393 1513 0.859232 CGCACCGCATCCAAGTATAC 59.141 55.000 0.00 0.00 0.00 1.47
1394 1514 1.804746 CGCACCGCATCCAAGTATACA 60.805 52.381 5.50 0.00 0.00 2.29
1395 1515 1.597663 GCACCGCATCCAAGTATACAC 59.402 52.381 5.50 0.00 0.00 2.90
1396 1516 1.858458 CACCGCATCCAAGTATACACG 59.142 52.381 5.50 0.00 0.00 4.49
1432 1562 5.833667 ACCCTCTCACGTATGAATAAGATCA 59.166 40.000 0.00 0.00 33.30 2.92
1439 1569 8.851960 TCACGTATGAATAAGATCAGTTGTAC 57.148 34.615 0.00 0.00 31.76 2.90
1440 1570 8.683615 TCACGTATGAATAAGATCAGTTGTACT 58.316 33.333 0.00 0.00 31.76 2.73
1460 1590 3.065786 ACTGTACTTCGTTTCAGTCGACA 59.934 43.478 19.50 0.00 36.59 4.35
1461 1591 3.365832 TGTACTTCGTTTCAGTCGACAC 58.634 45.455 19.50 5.98 37.05 3.67
1480 1610 1.502640 GTGCGACTAGACACGAGCT 59.497 57.895 0.00 0.00 0.00 4.09
1516 1646 5.760253 GTGGTGAATATACACAGCTTGCTAT 59.240 40.000 0.00 0.00 41.88 2.97
1520 1650 8.446273 GGTGAATATACACAGCTTGCTATTATG 58.554 37.037 0.00 0.00 41.88 1.90
1525 1655 9.862371 ATATACACAGCTTGCTATTATGTACTC 57.138 33.333 0.00 0.00 0.00 2.59
1526 1656 5.360591 ACACAGCTTGCTATTATGTACTCC 58.639 41.667 0.00 0.00 0.00 3.85
1527 1657 4.752101 CACAGCTTGCTATTATGTACTCCC 59.248 45.833 0.00 0.00 0.00 4.30
1528 1658 4.656112 ACAGCTTGCTATTATGTACTCCCT 59.344 41.667 0.00 0.00 0.00 4.20
1529 1659 5.221541 ACAGCTTGCTATTATGTACTCCCTC 60.222 44.000 0.00 0.00 0.00 4.30
1530 1660 5.011533 CAGCTTGCTATTATGTACTCCCTCT 59.988 44.000 0.00 0.00 0.00 3.69
1531 1661 5.011533 AGCTTGCTATTATGTACTCCCTCTG 59.988 44.000 0.00 0.00 0.00 3.35
1532 1662 5.221541 GCTTGCTATTATGTACTCCCTCTGT 60.222 44.000 0.00 0.00 0.00 3.41
1533 1663 6.015350 GCTTGCTATTATGTACTCCCTCTGTA 60.015 42.308 0.00 0.00 0.00 2.74
1534 1664 7.471539 GCTTGCTATTATGTACTCCCTCTGTAA 60.472 40.741 0.00 0.00 0.00 2.41
1535 1665 7.907841 TGCTATTATGTACTCCCTCTGTAAA 57.092 36.000 0.00 0.00 0.00 2.01
1536 1666 7.723324 TGCTATTATGTACTCCCTCTGTAAAC 58.277 38.462 0.00 0.00 0.00 2.01
1537 1667 7.563924 TGCTATTATGTACTCCCTCTGTAAACT 59.436 37.037 0.00 0.00 0.00 2.66
1538 1668 9.075678 GCTATTATGTACTCCCTCTGTAAACTA 57.924 37.037 0.00 0.00 0.00 2.24
1548 1678 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1549 1679 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1550 1680 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1551 1681 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1552 1682 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1600 1730 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1601 1731 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1602 1732 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1603 1733 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1604 1734 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
1605 1735 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1606 1736 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
1607 1737 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
1608 1738 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
1610 1740 6.759497 TTAGTTTACGGAGGGAGTACTTAC 57.241 41.667 0.00 0.00 0.00 2.34
1611 1741 4.666512 AGTTTACGGAGGGAGTACTTACA 58.333 43.478 0.00 0.00 0.00 2.41
1612 1742 5.267587 AGTTTACGGAGGGAGTACTTACAT 58.732 41.667 0.00 0.00 0.00 2.29
1613 1743 6.426587 AGTTTACGGAGGGAGTACTTACATA 58.573 40.000 0.00 0.00 0.00 2.29
1614 1744 6.891908 AGTTTACGGAGGGAGTACTTACATAA 59.108 38.462 0.00 0.00 0.00 1.90
1615 1745 7.562821 AGTTTACGGAGGGAGTACTTACATAAT 59.437 37.037 0.00 0.00 0.00 1.28
1616 1746 5.786264 ACGGAGGGAGTACTTACATAATG 57.214 43.478 0.00 0.00 0.00 1.90
1617 1747 5.452255 ACGGAGGGAGTACTTACATAATGA 58.548 41.667 0.00 0.00 0.00 2.57
1618 1748 5.301298 ACGGAGGGAGTACTTACATAATGAC 59.699 44.000 0.00 0.00 0.00 3.06
1619 1749 5.535406 CGGAGGGAGTACTTACATAATGACT 59.465 44.000 0.00 0.00 0.00 3.41
1620 1750 6.294065 CGGAGGGAGTACTTACATAATGACTC 60.294 46.154 0.00 0.00 33.99 3.36
1621 1751 6.778559 GGAGGGAGTACTTACATAATGACTCT 59.221 42.308 0.00 0.00 34.92 3.24
1622 1752 7.943447 GGAGGGAGTACTTACATAATGACTCTA 59.057 40.741 0.00 0.00 34.92 2.43
1623 1753 9.523168 GAGGGAGTACTTACATAATGACTCTAT 57.477 37.037 0.00 3.62 34.92 1.98
1624 1754 9.523168 AGGGAGTACTTACATAATGACTCTATC 57.477 37.037 0.00 4.72 34.92 2.08
1625 1755 8.741841 GGGAGTACTTACATAATGACTCTATCC 58.258 40.741 0.00 0.00 34.92 2.59
1626 1756 8.741841 GGAGTACTTACATAATGACTCTATCCC 58.258 40.741 0.00 0.00 34.92 3.85
1627 1757 9.298250 GAGTACTTACATAATGACTCTATCCCA 57.702 37.037 0.00 0.00 32.41 4.37
1628 1758 9.080097 AGTACTTACATAATGACTCTATCCCAC 57.920 37.037 0.00 0.00 0.00 4.61
1629 1759 9.080097 GTACTTACATAATGACTCTATCCCACT 57.920 37.037 0.00 0.00 0.00 4.00
1630 1760 8.184304 ACTTACATAATGACTCTATCCCACTC 57.816 38.462 0.00 0.00 0.00 3.51
1631 1761 8.007742 ACTTACATAATGACTCTATCCCACTCT 58.992 37.037 0.00 0.00 0.00 3.24
1632 1762 9.521841 CTTACATAATGACTCTATCCCACTCTA 57.478 37.037 0.00 0.00 0.00 2.43
1634 1764 8.964533 ACATAATGACTCTATCCCACTCTATT 57.035 34.615 0.00 0.00 0.00 1.73
1635 1765 9.386122 ACATAATGACTCTATCCCACTCTATTT 57.614 33.333 0.00 0.00 0.00 1.40
1639 1769 8.964533 ATGACTCTATCCCACTCTATTTATGT 57.035 34.615 0.00 0.00 0.00 2.29
1640 1770 8.183104 TGACTCTATCCCACTCTATTTATGTG 57.817 38.462 0.00 0.00 0.00 3.21
1651 1781 9.099454 CCACTCTATTTATGTGGTTCTAACTTC 57.901 37.037 0.00 0.00 44.35 3.01
1652 1782 9.653287 CACTCTATTTATGTGGTTCTAACTTCA 57.347 33.333 0.00 0.00 0.00 3.02
1662 1792 8.611654 TGTGGTTCTAACTTCAAATACTAACC 57.388 34.615 0.00 0.00 35.51 2.85
1663 1793 8.212312 TGTGGTTCTAACTTCAAATACTAACCA 58.788 33.333 0.00 0.00 40.99 3.67
1664 1794 9.059260 GTGGTTCTAACTTCAAATACTAACCAA 57.941 33.333 0.00 0.00 43.79 3.67
1665 1795 9.802039 TGGTTCTAACTTCAAATACTAACCAAT 57.198 29.630 0.00 0.00 40.48 3.16
1682 1812 9.273016 ACTAACCAATTATATGATGGAAGAACG 57.727 33.333 9.47 0.00 37.66 3.95
1683 1813 9.489084 CTAACCAATTATATGATGGAAGAACGA 57.511 33.333 9.47 0.00 37.66 3.85
1684 1814 7.969536 ACCAATTATATGATGGAAGAACGAG 57.030 36.000 9.47 0.00 37.66 4.18
1685 1815 7.735917 ACCAATTATATGATGGAAGAACGAGA 58.264 34.615 9.47 0.00 37.66 4.04
1686 1816 8.210946 ACCAATTATATGATGGAAGAACGAGAA 58.789 33.333 9.47 0.00 37.66 2.87
1687 1817 9.056005 CCAATTATATGATGGAAGAACGAGAAA 57.944 33.333 0.00 0.00 36.27 2.52
1691 1821 9.613428 TTATATGATGGAAGAACGAGAAAATGT 57.387 29.630 0.00 0.00 0.00 2.71
1693 1823 6.968131 TGATGGAAGAACGAGAAAATGTAG 57.032 37.500 0.00 0.00 0.00 2.74
1697 1827 6.989659 TGGAAGAACGAGAAAATGTAGTACT 58.010 36.000 0.00 0.00 0.00 2.73
1758 1888 1.621317 TCACAGAATGAACTGCCCGTA 59.379 47.619 0.00 0.00 39.69 4.02
1807 1937 4.353437 GACGCCCGACACGAAGGT 62.353 66.667 0.00 0.00 0.00 3.50
1906 2036 0.668706 CTAAGTCAGTGTGCAGCGCT 60.669 55.000 2.64 2.64 38.72 5.92
1920 2050 1.880340 GCGCTTGAGAGCTATGCGT 60.880 57.895 12.30 0.00 46.96 5.24
1982 2112 7.175816 TGCACTAGTGGTTGCTTCATTTTATAA 59.824 33.333 23.95 0.00 0.00 0.98
2259 2389 7.383843 AGGTTAAATTTGTCAAATTTACCAGCG 59.616 33.333 32.16 0.00 46.99 5.18
2262 2392 5.705609 ATTTGTCAAATTTACCAGCGACT 57.294 34.783 4.91 0.00 0.00 4.18
2265 2395 2.418976 GTCAAATTTACCAGCGACTCCC 59.581 50.000 0.00 0.00 0.00 4.30
2266 2396 2.039216 TCAAATTTACCAGCGACTCCCA 59.961 45.455 0.00 0.00 0.00 4.37
2267 2397 2.109425 AATTTACCAGCGACTCCCAC 57.891 50.000 0.00 0.00 0.00 4.61
2268 2398 0.252197 ATTTACCAGCGACTCCCACC 59.748 55.000 0.00 0.00 0.00 4.61
2269 2399 2.162338 TTTACCAGCGACTCCCACCG 62.162 60.000 0.00 0.00 0.00 4.94
2270 2400 3.873679 TACCAGCGACTCCCACCGT 62.874 63.158 0.00 0.00 0.00 4.83
2271 2401 4.003788 CCAGCGACTCCCACCGTT 62.004 66.667 0.00 0.00 0.00 4.44
2272 2402 2.432628 CAGCGACTCCCACCGTTC 60.433 66.667 0.00 0.00 0.00 3.95
2273 2403 4.052229 AGCGACTCCCACCGTTCG 62.052 66.667 0.00 0.00 0.00 3.95
2275 2405 4.351938 CGACTCCCACCGTTCGCA 62.352 66.667 0.00 0.00 0.00 5.10
2276 2406 2.029964 GACTCCCACCGTTCGCAA 59.970 61.111 0.00 0.00 0.00 4.85
2277 2407 1.595929 GACTCCCACCGTTCGCAAA 60.596 57.895 0.00 0.00 0.00 3.68
2278 2408 0.953960 GACTCCCACCGTTCGCAAAT 60.954 55.000 0.00 0.00 0.00 2.32
2279 2409 0.322322 ACTCCCACCGTTCGCAAATA 59.678 50.000 0.00 0.00 0.00 1.40
2280 2410 1.065709 ACTCCCACCGTTCGCAAATAT 60.066 47.619 0.00 0.00 0.00 1.28
2281 2411 2.168936 ACTCCCACCGTTCGCAAATATA 59.831 45.455 0.00 0.00 0.00 0.86
2282 2412 3.199677 CTCCCACCGTTCGCAAATATAA 58.800 45.455 0.00 0.00 0.00 0.98
2283 2413 3.199677 TCCCACCGTTCGCAAATATAAG 58.800 45.455 0.00 0.00 0.00 1.73
2284 2414 3.118702 TCCCACCGTTCGCAAATATAAGA 60.119 43.478 0.00 0.00 0.00 2.10
2285 2415 3.247648 CCCACCGTTCGCAAATATAAGAG 59.752 47.826 0.00 0.00 0.00 2.85
2286 2416 3.247648 CCACCGTTCGCAAATATAAGAGG 59.752 47.826 0.00 0.00 0.00 3.69
2287 2417 3.869246 CACCGTTCGCAAATATAAGAGGT 59.131 43.478 0.00 0.00 0.00 3.85
2288 2418 4.331717 CACCGTTCGCAAATATAAGAGGTT 59.668 41.667 0.00 0.00 0.00 3.50
2289 2419 4.569564 ACCGTTCGCAAATATAAGAGGTTC 59.430 41.667 0.00 0.00 0.00 3.62
2290 2420 4.809426 CCGTTCGCAAATATAAGAGGTTCT 59.191 41.667 0.00 0.00 0.00 3.01
2291 2421 5.981315 CCGTTCGCAAATATAAGAGGTTCTA 59.019 40.000 0.00 0.00 0.00 2.10
2292 2422 6.645415 CCGTTCGCAAATATAAGAGGTTCTAT 59.355 38.462 0.00 0.00 0.00 1.98
2293 2423 7.148787 CCGTTCGCAAATATAAGAGGTTCTATC 60.149 40.741 0.00 0.00 0.00 2.08
2294 2424 7.595502 CGTTCGCAAATATAAGAGGTTCTATCT 59.404 37.037 0.00 0.00 0.00 1.98
2295 2425 9.262358 GTTCGCAAATATAAGAGGTTCTATCTT 57.738 33.333 0.00 0.00 40.13 2.40
2296 2426 9.832445 TTCGCAAATATAAGAGGTTCTATCTTT 57.168 29.630 0.00 0.00 38.05 2.52
2297 2427 9.832445 TCGCAAATATAAGAGGTTCTATCTTTT 57.168 29.630 0.00 0.00 38.05 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 2.590092 GTGCTTACGGCCTGGGAT 59.410 61.111 0.00 0.00 40.92 3.85
96 98 3.717400 TTATCGCAGTTTGTTGCCAAA 57.283 38.095 0.00 0.00 41.01 3.28
114 116 2.607134 TTCCTCCCCGGGCGTTTA 60.607 61.111 17.73 0.00 0.00 2.01
147 149 4.200283 CCCGCTCAGCTCGACTCC 62.200 72.222 0.00 0.00 0.00 3.85
163 165 4.081917 TGTTTGTCTTCAGGAAACCAAACC 60.082 41.667 21.18 11.71 38.64 3.27
168 170 4.112634 GCTTTGTTTGTCTTCAGGAAACC 58.887 43.478 0.00 0.00 0.00 3.27
198 200 3.801114 AAAAACTCCAGTTGTTCAGCC 57.199 42.857 0.00 0.00 38.44 4.85
201 203 6.864165 GTGTTGTTAAAAACTCCAGTTGTTCA 59.136 34.615 9.88 0.00 36.84 3.18
209 211 5.923733 ATGTGGTGTTGTTAAAAACTCCA 57.076 34.783 22.73 22.73 46.27 3.86
226 228 4.641989 CCTGGGAGACAAAGATAAATGTGG 59.358 45.833 0.00 0.00 0.00 4.17
237 239 1.065410 TCCAAGGCCTGGGAGACAAA 61.065 55.000 26.50 0.91 46.44 2.83
243 245 2.852075 AACGTCCAAGGCCTGGGA 60.852 61.111 26.50 26.50 46.44 4.37
269 272 2.155279 CTGTTCTGTCTCTCCGTCTGA 58.845 52.381 0.00 0.00 0.00 3.27
273 276 1.074084 TCTCCTGTTCTGTCTCTCCGT 59.926 52.381 0.00 0.00 0.00 4.69
290 293 3.939592 GGCTGTTGTAATGGGTAGTTCTC 59.060 47.826 0.00 0.00 0.00 2.87
291 294 3.329520 TGGCTGTTGTAATGGGTAGTTCT 59.670 43.478 0.00 0.00 0.00 3.01
293 296 3.799432 TGGCTGTTGTAATGGGTAGTT 57.201 42.857 0.00 0.00 0.00 2.24
314 317 2.283966 CCTCTCCTGTCCGGGTGT 60.284 66.667 0.00 0.00 0.00 4.16
329 332 1.595993 ATGTGTCGTAGTGCTCGCCT 61.596 55.000 0.00 0.00 0.00 5.52
348 351 5.773176 GGTTGTATCCTTTCCCTTTTTCTCA 59.227 40.000 0.00 0.00 0.00 3.27
350 353 5.711698 TGGTTGTATCCTTTCCCTTTTTCT 58.288 37.500 0.00 0.00 0.00 2.52
351 354 6.351033 GGATGGTTGTATCCTTTCCCTTTTTC 60.351 42.308 0.00 0.00 42.73 2.29
355 358 3.596046 TGGATGGTTGTATCCTTTCCCTT 59.404 43.478 6.37 0.00 45.59 3.95
374 377 1.270571 TGTAGTCTGCATTTGCGTGGA 60.271 47.619 0.00 0.00 45.83 4.02
381 384 2.751166 AGCTCGTGTAGTCTGCATTT 57.249 45.000 0.00 0.00 0.00 2.32
388 391 2.561733 TGCATGTAGCTCGTGTAGTC 57.438 50.000 0.00 0.00 45.94 2.59
395 398 1.226686 GCCTCCATGCATGTAGCTCG 61.227 60.000 24.58 8.85 45.94 5.03
400 403 1.227234 CGTCGCCTCCATGCATGTA 60.227 57.895 24.58 9.02 0.00 2.29
455 458 2.254350 CTTCTGTCGCACGTCCGA 59.746 61.111 0.00 0.00 34.40 4.55
505 511 2.123982 CTTCCATCCCTGCTGCCC 60.124 66.667 0.00 0.00 0.00 5.36
581 587 3.474600 CAGGGTGATGAAAGATAGGCTG 58.525 50.000 0.00 0.00 0.00 4.85
586 592 4.782691 TCAAGACCAGGGTGATGAAAGATA 59.217 41.667 0.00 0.00 0.00 1.98
590 596 2.553028 GCTCAAGACCAGGGTGATGAAA 60.553 50.000 0.00 0.00 0.00 2.69
602 608 0.035915 GTTCTCCCTGGCTCAAGACC 60.036 60.000 0.00 0.00 0.00 3.85
611 617 2.124507 TTTCCGGCTGTTCTCCCTGG 62.125 60.000 0.00 0.00 0.00 4.45
613 619 0.836400 TCTTTCCGGCTGTTCTCCCT 60.836 55.000 0.00 0.00 0.00 4.20
626 632 1.474855 GCTCTCAGGGATGCTCTTTCC 60.475 57.143 0.00 0.00 0.00 3.13
723 770 9.997482 TTTGCAGATAAGAAATTTCCGTAATAC 57.003 29.630 14.61 1.52 0.00 1.89
735 782 8.023128 GCACTACTGATTTTTGCAGATAAGAAA 58.977 33.333 0.00 0.00 36.86 2.52
752 802 2.621526 TCTTGTCGAACTGCACTACTGA 59.378 45.455 0.00 0.00 0.00 3.41
955 1014 1.795286 GTGCTTCTTGTCTTGTCTCGG 59.205 52.381 0.00 0.00 0.00 4.63
996 1068 2.435938 CCGGTGCGTGCCATACTT 60.436 61.111 0.00 0.00 0.00 2.24
1246 1327 1.227380 CGAGGTAGCAGATGGGCAC 60.227 63.158 0.00 0.00 35.83 5.01
1326 1407 2.103094 TGGATTGGTCGATGGACTGATC 59.897 50.000 7.84 10.55 42.97 2.92
1331 1412 1.873903 CGGATGGATTGGTCGATGGAC 60.874 57.143 0.00 0.00 42.66 4.02
1340 1421 1.669115 CGCTAGCCGGATGGATTGG 60.669 63.158 7.48 0.00 37.49 3.16
1384 1504 2.624636 GGGTGGAACGTGTATACTTGG 58.375 52.381 4.17 0.00 38.12 3.61
1385 1505 2.624636 GGGGTGGAACGTGTATACTTG 58.375 52.381 4.17 0.00 38.12 3.16
1387 1507 0.819582 CGGGGTGGAACGTGTATACT 59.180 55.000 4.17 0.00 38.12 2.12
1388 1508 0.179103 CCGGGGTGGAACGTGTATAC 60.179 60.000 0.00 0.00 42.00 1.47
1389 1509 0.324183 TCCGGGGTGGAACGTGTATA 60.324 55.000 0.00 0.00 46.38 1.47
1390 1510 1.610086 TCCGGGGTGGAACGTGTAT 60.610 57.895 0.00 0.00 46.38 2.29
1391 1511 2.203611 TCCGGGGTGGAACGTGTA 60.204 61.111 0.00 0.00 46.38 2.90
1439 1569 3.421231 GTGTCGACTGAAACGAAGTACAG 59.579 47.826 17.92 0.00 45.00 2.74
1440 1570 3.365832 GTGTCGACTGAAACGAAGTACA 58.634 45.455 17.92 0.00 45.00 2.90
1480 1610 7.279981 GTGTATATTCACCACTTCAGCATACAA 59.720 37.037 1.18 0.00 30.59 2.41
1523 1653 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1524 1654 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1525 1655 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1526 1656 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1574 1704 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1575 1705 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1576 1706 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1577 1707 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1578 1708 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1579 1709 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1580 1710 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1581 1711 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1582 1712 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1584 1714 9.072375 GTAAGTACTCCCTCCGTAAACTAATAT 57.928 37.037 0.00 0.00 0.00 1.28
1585 1715 8.052748 TGTAAGTACTCCCTCCGTAAACTAATA 58.947 37.037 0.00 0.00 0.00 0.98
1586 1716 6.891908 TGTAAGTACTCCCTCCGTAAACTAAT 59.108 38.462 0.00 0.00 0.00 1.73
1587 1717 6.245408 TGTAAGTACTCCCTCCGTAAACTAA 58.755 40.000 0.00 0.00 0.00 2.24
1588 1718 5.815581 TGTAAGTACTCCCTCCGTAAACTA 58.184 41.667 0.00 0.00 0.00 2.24
1589 1719 4.666512 TGTAAGTACTCCCTCCGTAAACT 58.333 43.478 0.00 0.00 0.00 2.66
1590 1720 5.588958 ATGTAAGTACTCCCTCCGTAAAC 57.411 43.478 0.00 0.00 0.00 2.01
1591 1721 7.560991 TCATTATGTAAGTACTCCCTCCGTAAA 59.439 37.037 0.00 0.00 0.00 2.01
1592 1722 7.013655 GTCATTATGTAAGTACTCCCTCCGTAA 59.986 40.741 0.00 0.00 0.00 3.18
1593 1723 6.488006 GTCATTATGTAAGTACTCCCTCCGTA 59.512 42.308 0.00 0.00 0.00 4.02
1594 1724 5.301298 GTCATTATGTAAGTACTCCCTCCGT 59.699 44.000 0.00 0.00 0.00 4.69
1595 1725 5.535406 AGTCATTATGTAAGTACTCCCTCCG 59.465 44.000 0.00 0.00 0.00 4.63
1596 1726 6.778559 AGAGTCATTATGTAAGTACTCCCTCC 59.221 42.308 0.00 0.00 34.21 4.30
1597 1727 7.826918 AGAGTCATTATGTAAGTACTCCCTC 57.173 40.000 0.00 0.00 34.21 4.30
1598 1728 9.523168 GATAGAGTCATTATGTAAGTACTCCCT 57.477 37.037 0.00 0.00 34.21 4.20
1599 1729 8.741841 GGATAGAGTCATTATGTAAGTACTCCC 58.258 40.741 0.00 0.00 34.21 4.30
1600 1730 8.741841 GGGATAGAGTCATTATGTAAGTACTCC 58.258 40.741 0.00 0.00 34.21 3.85
1601 1731 9.298250 TGGGATAGAGTCATTATGTAAGTACTC 57.702 37.037 0.00 3.66 34.04 2.59
1602 1732 9.080097 GTGGGATAGAGTCATTATGTAAGTACT 57.920 37.037 0.00 0.00 0.00 2.73
1603 1733 9.080097 AGTGGGATAGAGTCATTATGTAAGTAC 57.920 37.037 0.00 0.00 0.00 2.73
1604 1734 9.298250 GAGTGGGATAGAGTCATTATGTAAGTA 57.702 37.037 0.00 0.00 0.00 2.24
1605 1735 8.007742 AGAGTGGGATAGAGTCATTATGTAAGT 58.992 37.037 0.00 0.00 0.00 2.24
1606 1736 8.415950 AGAGTGGGATAGAGTCATTATGTAAG 57.584 38.462 0.00 0.00 0.00 2.34
1609 1739 8.964533 AATAGAGTGGGATAGAGTCATTATGT 57.035 34.615 0.00 0.00 0.00 2.29
1613 1743 9.386122 ACATAAATAGAGTGGGATAGAGTCATT 57.614 33.333 0.00 0.00 0.00 2.57
1614 1744 8.811017 CACATAAATAGAGTGGGATAGAGTCAT 58.189 37.037 0.00 0.00 0.00 3.06
1615 1745 7.233553 CCACATAAATAGAGTGGGATAGAGTCA 59.766 40.741 0.00 0.00 46.98 3.41
1616 1746 7.607250 CCACATAAATAGAGTGGGATAGAGTC 58.393 42.308 0.00 0.00 46.98 3.36
1617 1747 7.546250 CCACATAAATAGAGTGGGATAGAGT 57.454 40.000 0.00 0.00 46.98 3.24
1626 1756 9.653287 TGAAGTTAGAACCACATAAATAGAGTG 57.347 33.333 0.00 0.00 0.00 3.51
1636 1766 9.227777 GGTTAGTATTTGAAGTTAGAACCACAT 57.772 33.333 0.00 0.00 35.08 3.21
1637 1767 8.212312 TGGTTAGTATTTGAAGTTAGAACCACA 58.788 33.333 0.00 0.00 39.01 4.17
1638 1768 8.611654 TGGTTAGTATTTGAAGTTAGAACCAC 57.388 34.615 0.00 0.00 39.01 4.16
1639 1769 9.802039 ATTGGTTAGTATTTGAAGTTAGAACCA 57.198 29.630 0.00 0.00 41.43 3.67
1656 1786 9.273016 CGTTCTTCCATCATATAATTGGTTAGT 57.727 33.333 0.00 0.00 0.00 2.24
1657 1787 9.489084 TCGTTCTTCCATCATATAATTGGTTAG 57.511 33.333 0.00 0.00 0.00 2.34
1658 1788 9.489084 CTCGTTCTTCCATCATATAATTGGTTA 57.511 33.333 0.00 0.00 0.00 2.85
1659 1789 8.210946 TCTCGTTCTTCCATCATATAATTGGTT 58.789 33.333 0.00 0.00 0.00 3.67
1660 1790 7.735917 TCTCGTTCTTCCATCATATAATTGGT 58.264 34.615 0.00 0.00 0.00 3.67
1661 1791 8.607441 TTCTCGTTCTTCCATCATATAATTGG 57.393 34.615 0.00 0.00 0.00 3.16
1665 1795 9.613428 ACATTTTCTCGTTCTTCCATCATATAA 57.387 29.630 0.00 0.00 0.00 0.98
1667 1797 9.265901 CTACATTTTCTCGTTCTTCCATCATAT 57.734 33.333 0.00 0.00 0.00 1.78
1668 1798 8.258007 ACTACATTTTCTCGTTCTTCCATCATA 58.742 33.333 0.00 0.00 0.00 2.15
1669 1799 7.106239 ACTACATTTTCTCGTTCTTCCATCAT 58.894 34.615 0.00 0.00 0.00 2.45
1670 1800 6.464222 ACTACATTTTCTCGTTCTTCCATCA 58.536 36.000 0.00 0.00 0.00 3.07
1671 1801 6.969828 ACTACATTTTCTCGTTCTTCCATC 57.030 37.500 0.00 0.00 0.00 3.51
1672 1802 7.612677 AGTACTACATTTTCTCGTTCTTCCAT 58.387 34.615 0.00 0.00 0.00 3.41
1673 1803 6.989659 AGTACTACATTTTCTCGTTCTTCCA 58.010 36.000 0.00 0.00 0.00 3.53
1674 1804 6.530887 GGAGTACTACATTTTCTCGTTCTTCC 59.469 42.308 0.00 0.00 0.00 3.46
1675 1805 6.250951 CGGAGTACTACATTTTCTCGTTCTTC 59.749 42.308 5.80 0.00 0.00 2.87
1676 1806 6.091437 CGGAGTACTACATTTTCTCGTTCTT 58.909 40.000 5.80 0.00 0.00 2.52
1677 1807 5.392811 CCGGAGTACTACATTTTCTCGTTCT 60.393 44.000 5.80 0.00 0.00 3.01
1678 1808 4.797349 CCGGAGTACTACATTTTCTCGTTC 59.203 45.833 5.80 0.00 0.00 3.95
1679 1809 4.741342 CCGGAGTACTACATTTTCTCGTT 58.259 43.478 5.80 0.00 0.00 3.85
1680 1810 3.428589 GCCGGAGTACTACATTTTCTCGT 60.429 47.826 5.05 0.00 0.00 4.18
1681 1811 3.114065 GCCGGAGTACTACATTTTCTCG 58.886 50.000 5.05 0.00 0.00 4.04
1682 1812 4.119442 TGCCGGAGTACTACATTTTCTC 57.881 45.455 5.05 0.00 0.00 2.87
1683 1813 4.546829 TTGCCGGAGTACTACATTTTCT 57.453 40.909 5.05 0.00 0.00 2.52
1684 1814 5.616488 TTTTGCCGGAGTACTACATTTTC 57.384 39.130 5.05 0.00 0.00 2.29
1685 1815 6.207810 TCAATTTTGCCGGAGTACTACATTTT 59.792 34.615 5.05 0.00 0.00 1.82
1686 1816 5.708230 TCAATTTTGCCGGAGTACTACATTT 59.292 36.000 5.05 0.00 0.00 2.32
1687 1817 5.123344 GTCAATTTTGCCGGAGTACTACATT 59.877 40.000 5.05 0.00 0.00 2.71
1688 1818 4.634443 GTCAATTTTGCCGGAGTACTACAT 59.366 41.667 5.05 0.00 0.00 2.29
1689 1819 3.998341 GTCAATTTTGCCGGAGTACTACA 59.002 43.478 5.05 0.00 0.00 2.74
1690 1820 3.998341 TGTCAATTTTGCCGGAGTACTAC 59.002 43.478 5.05 0.00 0.00 2.73
1691 1821 4.274602 TGTCAATTTTGCCGGAGTACTA 57.725 40.909 5.05 0.00 0.00 1.82
1692 1822 3.134574 TGTCAATTTTGCCGGAGTACT 57.865 42.857 5.05 0.00 0.00 2.73
1693 1823 3.907894 TTGTCAATTTTGCCGGAGTAC 57.092 42.857 5.05 0.00 0.00 2.73
1697 1827 5.467063 GGTTAAATTTGTCAATTTTGCCGGA 59.533 36.000 5.05 0.00 39.19 5.14
1758 1888 2.095919 GTCAGCCGCGTGAAATAGTTTT 60.096 45.455 4.92 0.00 0.00 2.43
1906 2036 1.546029 AGTGTGACGCATAGCTCTCAA 59.454 47.619 0.00 0.00 0.00 3.02
1982 2112 1.300971 CGCTGCACTAGTGGTTGCAT 61.301 55.000 23.95 0.00 33.83 3.96
2175 2305 0.246635 ACTATTTCACGCGGCTGACT 59.753 50.000 12.47 0.00 0.00 3.41
2259 2389 0.953960 ATTTGCGAACGGTGGGAGTC 60.954 55.000 0.00 0.00 0.00 3.36
2262 2392 2.983907 TATATTTGCGAACGGTGGGA 57.016 45.000 0.00 0.00 0.00 4.37
2265 2395 3.869246 ACCTCTTATATTTGCGAACGGTG 59.131 43.478 0.00 0.00 0.00 4.94
2266 2396 4.133013 ACCTCTTATATTTGCGAACGGT 57.867 40.909 0.00 0.00 0.00 4.83
2267 2397 4.809426 AGAACCTCTTATATTTGCGAACGG 59.191 41.667 0.00 0.00 0.00 4.44
2268 2398 5.968387 AGAACCTCTTATATTTGCGAACG 57.032 39.130 0.00 0.00 0.00 3.95
2269 2399 8.819643 AGATAGAACCTCTTATATTTGCGAAC 57.180 34.615 0.00 0.00 0.00 3.95
2270 2400 9.832445 AAAGATAGAACCTCTTATATTTGCGAA 57.168 29.630 0.00 0.00 32.72 4.70
2271 2401 9.832445 AAAAGATAGAACCTCTTATATTTGCGA 57.168 29.630 0.00 0.00 32.72 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.