Multiple sequence alignment - TraesCS3A01G443500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G443500 chr3A 100.000 5635 0 0 1 5635 684888692 684883058 0.000000e+00 10406
1 TraesCS3A01G443500 chr3A 91.837 98 6 2 3093 3188 12778805 12778902 9.850000e-28 135
2 TraesCS3A01G443500 chr3A 90.385 104 8 1 3087 3188 470095675 470095778 9.850000e-28 135
3 TraesCS3A01G443500 chr3D 97.151 3686 81 10 1964 5635 548017396 548013721 0.000000e+00 6204
4 TraesCS3A01G443500 chr3D 94.256 1271 59 13 681 1947 548018705 548017445 0.000000e+00 1930
5 TraesCS3A01G443500 chr3D 96.107 411 14 2 1 410 276274111 276274520 0.000000e+00 669
6 TraesCS3A01G443500 chr3D 92.336 274 17 3 411 683 548019056 548018786 2.460000e-103 387
7 TraesCS3A01G443500 chr3D 93.548 93 4 2 3097 3187 168584865 168584773 2.740000e-28 137
8 TraesCS3A01G443500 chr3B 95.513 2474 69 18 3193 5635 725579203 725576741 0.000000e+00 3916
9 TraesCS3A01G443500 chr3B 96.171 1123 36 6 1961 3080 725580374 725579256 0.000000e+00 1829
10 TraesCS3A01G443500 chr3B 93.635 1194 65 8 759 1947 725581607 725580420 0.000000e+00 1773
11 TraesCS3A01G443500 chr4D 96.594 411 12 2 1 410 378195762 378196171 0.000000e+00 680
12 TraesCS3A01G443500 chr7D 95.663 415 15 3 1 414 194775826 194775414 0.000000e+00 664
13 TraesCS3A01G443500 chr7D 95.620 411 16 2 1 410 389254393 389254802 0.000000e+00 658
14 TraesCS3A01G443500 chr5D 95.620 411 16 2 1 410 67819964 67819555 0.000000e+00 658
15 TraesCS3A01G443500 chr5D 95.400 413 16 3 1 411 292547259 292547670 0.000000e+00 654
16 TraesCS3A01G443500 chr1D 95.610 410 17 1 1 410 488900429 488900837 0.000000e+00 656
17 TraesCS3A01G443500 chr1D 88.288 111 11 1 3090 3198 226457720 226457610 1.270000e-26 132
18 TraesCS3A01G443500 chr6D 95.377 411 17 2 1 410 71188470 71188879 0.000000e+00 652
19 TraesCS3A01G443500 chr6D 95.377 411 17 2 1 410 401407577 401407986 0.000000e+00 652
20 TraesCS3A01G443500 chr5B 91.429 105 7 1 3086 3188 166379078 166379182 5.880000e-30 143
21 TraesCS3A01G443500 chr5B 93.548 93 4 2 3097 3187 565928450 565928358 2.740000e-28 137
22 TraesCS3A01G443500 chr7B 92.553 94 5 1 3097 3188 162120905 162120812 3.540000e-27 134
23 TraesCS3A01G443500 chr1A 88.288 111 11 1 3090 3198 293720637 293720527 1.270000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G443500 chr3A 684883058 684888692 5634 True 10406.000000 10406 100.000000 1 5635 1 chr3A.!!$R1 5634
1 TraesCS3A01G443500 chr3D 548013721 548019056 5335 True 2840.333333 6204 94.581000 411 5635 3 chr3D.!!$R2 5224
2 TraesCS3A01G443500 chr3B 725576741 725581607 4866 True 2506.000000 3916 95.106333 759 5635 3 chr3B.!!$R1 4876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.106708 TTGTTGCTTCCGCTGACTCT 59.893 50.000 0.00 0.0 36.97 3.24 F
251 252 0.106708 TGTTGCTTCCGCTGACTCTT 59.893 50.000 0.00 0.0 36.97 2.85 F
253 254 0.106708 TTGCTTCCGCTGACTCTTGT 59.893 50.000 0.00 0.0 36.97 3.16 F
254 255 0.601046 TGCTTCCGCTGACTCTTGTG 60.601 55.000 0.00 0.0 36.97 3.33 F
255 256 0.601311 GCTTCCGCTGACTCTTGTGT 60.601 55.000 0.00 0.0 0.00 3.72 F
502 503 1.001706 GACGGTGCTTTCCCAAAGAAC 60.002 52.381 0.01 0.0 44.82 3.01 F
788 874 1.116308 GCCTCTCTGGAAGTAGGACC 58.884 60.000 0.00 0.0 39.52 4.46 F
1863 1969 1.281867 TGTGCTATTCCAGTCCCAAGG 59.718 52.381 0.00 0.0 0.00 3.61 F
1870 1976 1.352083 TCCAGTCCCAAGGAACAGAG 58.648 55.000 0.00 0.0 31.38 3.35 F
2863 3003 2.168496 CTGGAAGACGTACTGAGGGAA 58.832 52.381 0.00 0.0 34.07 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2062 0.183492 TCCAGAGGGTGCATATTGCC 59.817 55.000 0.00 0.00 44.23 4.52 R
2161 2301 2.024414 GCATTCACCCTGGGATAACAC 58.976 52.381 22.23 5.12 0.00 3.32 R
2174 2314 6.019156 GCACTGAATTAGAGACTAGCATTCAC 60.019 42.308 0.00 0.00 31.94 3.18 R
2514 2654 3.444029 ACCCATGCCAAAAAGAATAGCT 58.556 40.909 0.00 0.00 0.00 3.32 R
2547 2687 6.798315 ATCAAAATAGGAATGATCGCAGAG 57.202 37.500 0.00 0.00 43.63 3.35 R
2783 2923 2.672961 TCCTGCCTCATCGTTAAGTG 57.327 50.000 0.00 0.00 0.00 3.16 R
3114 3255 4.024048 ACCTTAGTTCAAAACTGCGACATG 60.024 41.667 2.65 0.00 42.84 3.21 R
3115 3256 4.134563 ACCTTAGTTCAAAACTGCGACAT 58.865 39.130 2.65 0.00 42.84 3.06 R
3369 3518 4.906065 AAATGTTCCCATCATGATGTCG 57.094 40.909 29.23 20.28 37.11 4.35 R
4892 5056 0.035056 GGGTGCTTAGCCACTCATGT 60.035 55.000 0.29 0.00 36.22 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.850557 TTTTCTTCTTTCTGGTTGATGCA 57.149 34.783 0.00 0.00 0.00 3.96
50 51 5.850557 TTTCTTCTTTCTGGTTGATGCAA 57.149 34.783 0.00 0.00 0.00 4.08
51 52 4.836125 TCTTCTTTCTGGTTGATGCAAC 57.164 40.909 0.00 1.82 42.89 4.17
60 61 2.532531 GTTGATGCAACCAGATGTCG 57.467 50.000 0.00 0.00 38.30 4.35
61 62 1.131126 GTTGATGCAACCAGATGTCGG 59.869 52.381 0.00 0.00 38.30 4.79
62 63 0.612744 TGATGCAACCAGATGTCGGA 59.387 50.000 0.00 0.00 0.00 4.55
63 64 1.293924 GATGCAACCAGATGTCGGAG 58.706 55.000 0.00 0.00 0.00 4.63
64 65 0.745845 ATGCAACCAGATGTCGGAGC 60.746 55.000 0.00 0.00 0.00 4.70
65 66 2.109126 GCAACCAGATGTCGGAGCC 61.109 63.158 0.00 0.00 0.00 4.70
66 67 1.450312 CAACCAGATGTCGGAGCCC 60.450 63.158 0.00 0.00 0.00 5.19
67 68 1.918293 AACCAGATGTCGGAGCCCA 60.918 57.895 0.00 0.00 0.00 5.36
68 69 1.903877 AACCAGATGTCGGAGCCCAG 61.904 60.000 0.00 0.00 0.00 4.45
69 70 2.503061 CAGATGTCGGAGCCCAGG 59.497 66.667 0.00 0.00 0.00 4.45
70 71 2.060383 CAGATGTCGGAGCCCAGGA 61.060 63.158 0.00 0.00 0.00 3.86
71 72 1.760086 AGATGTCGGAGCCCAGGAG 60.760 63.158 0.00 0.00 0.00 3.69
72 73 3.453070 GATGTCGGAGCCCAGGAGC 62.453 68.421 0.00 0.00 0.00 4.70
77 78 2.771762 GGAGCCCAGGAGCCAGAT 60.772 66.667 0.00 0.00 0.00 2.90
78 79 2.509916 GAGCCCAGGAGCCAGATG 59.490 66.667 0.00 0.00 0.00 2.90
79 80 3.771110 GAGCCCAGGAGCCAGATGC 62.771 68.421 0.00 0.00 41.71 3.91
80 81 4.891037 GCCCAGGAGCCAGATGCC 62.891 72.222 0.00 0.00 42.71 4.40
81 82 3.414193 CCCAGGAGCCAGATGCCA 61.414 66.667 0.00 0.00 42.71 4.92
82 83 2.124403 CCAGGAGCCAGATGCCAC 60.124 66.667 0.00 0.00 42.71 5.01
83 84 2.124403 CAGGAGCCAGATGCCACC 60.124 66.667 0.00 0.00 42.71 4.61
84 85 3.790437 AGGAGCCAGATGCCACCG 61.790 66.667 0.00 0.00 42.71 4.94
86 87 4.479993 GAGCCAGATGCCACCGCT 62.480 66.667 0.00 0.00 42.71 5.52
87 88 4.790962 AGCCAGATGCCACCGCTG 62.791 66.667 0.00 0.00 42.71 5.18
88 89 4.783621 GCCAGATGCCACCGCTGA 62.784 66.667 0.00 0.00 35.36 4.26
89 90 2.191375 CCAGATGCCACCGCTGAT 59.809 61.111 0.00 0.00 35.36 2.90
90 91 2.184830 CCAGATGCCACCGCTGATG 61.185 63.158 0.00 0.00 35.36 3.07
91 92 2.515523 AGATGCCACCGCTGATGC 60.516 61.111 0.00 0.00 35.36 3.91
92 93 3.589881 GATGCCACCGCTGATGCC 61.590 66.667 0.00 0.00 35.36 4.40
93 94 4.119363 ATGCCACCGCTGATGCCT 62.119 61.111 0.00 0.00 35.36 4.75
94 95 2.665008 GATGCCACCGCTGATGCCTA 62.665 60.000 0.00 0.00 35.36 3.93
95 96 2.897350 GCCACCGCTGATGCCTAC 60.897 66.667 0.00 0.00 35.36 3.18
96 97 2.903357 CCACCGCTGATGCCTACT 59.097 61.111 0.00 0.00 35.36 2.57
97 98 2.028125 GCCACCGCTGATGCCTACTA 62.028 60.000 0.00 0.00 35.36 1.82
98 99 0.249489 CCACCGCTGATGCCTACTAC 60.249 60.000 0.00 0.00 35.36 2.73
99 100 0.747255 CACCGCTGATGCCTACTACT 59.253 55.000 0.00 0.00 35.36 2.57
100 101 1.954382 CACCGCTGATGCCTACTACTA 59.046 52.381 0.00 0.00 35.36 1.82
101 102 1.955080 ACCGCTGATGCCTACTACTAC 59.045 52.381 0.00 0.00 35.36 2.73
102 103 1.069159 CCGCTGATGCCTACTACTACG 60.069 57.143 0.00 0.00 35.36 3.51
103 104 1.602851 CGCTGATGCCTACTACTACGT 59.397 52.381 0.00 0.00 35.36 3.57
104 105 2.602456 CGCTGATGCCTACTACTACGTG 60.602 54.545 0.00 0.00 35.36 4.49
105 106 2.287668 GCTGATGCCTACTACTACGTGG 60.288 54.545 0.00 0.00 0.00 4.94
106 107 3.211865 CTGATGCCTACTACTACGTGGA 58.788 50.000 5.70 0.00 0.00 4.02
107 108 3.211865 TGATGCCTACTACTACGTGGAG 58.788 50.000 5.70 0.35 0.00 3.86
108 109 3.118149 TGATGCCTACTACTACGTGGAGA 60.118 47.826 5.70 0.00 0.00 3.71
109 110 2.636830 TGCCTACTACTACGTGGAGAC 58.363 52.381 5.70 0.00 0.00 3.36
110 111 1.946081 GCCTACTACTACGTGGAGACC 59.054 57.143 5.70 0.00 0.00 3.85
111 112 2.208431 CCTACTACTACGTGGAGACCG 58.792 57.143 5.70 0.00 0.00 4.79
112 113 1.596727 CTACTACTACGTGGAGACCGC 59.403 57.143 5.70 0.00 0.00 5.68
113 114 1.028868 ACTACTACGTGGAGACCGCC 61.029 60.000 5.70 0.00 0.00 6.13
114 115 2.044832 CTACTACGTGGAGACCGCCG 62.045 65.000 5.70 0.00 0.00 6.46
115 116 2.520465 TACTACGTGGAGACCGCCGA 62.520 60.000 5.70 0.00 0.00 5.54
116 117 3.392595 CTACGTGGAGACCGCCGAC 62.393 68.421 0.00 0.00 0.00 4.79
119 120 4.773117 GTGGAGACCGCCGACGAC 62.773 72.222 0.00 0.00 43.93 4.34
122 123 4.477975 GAGACCGCCGACGACCAG 62.478 72.222 0.00 0.00 43.93 4.00
127 128 3.129502 CGCCGACGACCAGGAGTA 61.130 66.667 0.00 0.00 43.93 2.59
128 129 2.799371 GCCGACGACCAGGAGTAG 59.201 66.667 0.00 0.00 0.00 2.57
129 130 2.045131 GCCGACGACCAGGAGTAGT 61.045 63.158 0.00 0.00 36.98 2.73
130 131 1.593296 GCCGACGACCAGGAGTAGTT 61.593 60.000 0.00 0.00 34.05 2.24
131 132 1.742761 CCGACGACCAGGAGTAGTTA 58.257 55.000 0.00 0.00 34.05 2.24
132 133 1.669779 CCGACGACCAGGAGTAGTTAG 59.330 57.143 0.00 0.00 34.05 2.34
133 134 1.669779 CGACGACCAGGAGTAGTTAGG 59.330 57.143 0.00 0.00 34.05 2.69
134 135 2.679059 CGACGACCAGGAGTAGTTAGGA 60.679 54.545 0.00 0.00 34.05 2.94
135 136 2.944349 GACGACCAGGAGTAGTTAGGAG 59.056 54.545 0.00 0.00 34.05 3.69
136 137 2.299521 CGACCAGGAGTAGTTAGGAGG 58.700 57.143 0.00 0.00 0.00 4.30
137 138 2.033372 GACCAGGAGTAGTTAGGAGGC 58.967 57.143 0.00 0.00 0.00 4.70
138 139 1.646977 ACCAGGAGTAGTTAGGAGGCT 59.353 52.381 0.00 0.00 0.00 4.58
139 140 2.312390 CCAGGAGTAGTTAGGAGGCTC 58.688 57.143 5.78 5.78 0.00 4.70
140 141 2.312390 CAGGAGTAGTTAGGAGGCTCC 58.688 57.143 26.42 26.42 44.37 4.70
141 142 1.218450 AGGAGTAGTTAGGAGGCTCCC 59.782 57.143 29.62 14.83 44.94 4.30
142 143 1.063114 GGAGTAGTTAGGAGGCTCCCA 60.063 57.143 29.62 14.71 39.69 4.37
143 144 2.312390 GAGTAGTTAGGAGGCTCCCAG 58.688 57.143 29.62 0.00 37.19 4.45
144 145 1.930914 AGTAGTTAGGAGGCTCCCAGA 59.069 52.381 29.62 13.01 37.19 3.86
145 146 2.033372 GTAGTTAGGAGGCTCCCAGAC 58.967 57.143 29.62 23.23 37.19 3.51
146 147 0.413832 AGTTAGGAGGCTCCCAGACA 59.586 55.000 29.62 7.57 37.19 3.41
147 148 0.827368 GTTAGGAGGCTCCCAGACAG 59.173 60.000 29.62 0.00 37.19 3.51
148 149 0.325671 TTAGGAGGCTCCCAGACAGG 60.326 60.000 29.62 0.00 37.19 4.00
149 150 1.221909 TAGGAGGCTCCCAGACAGGA 61.222 60.000 29.62 2.63 41.22 3.86
155 156 2.538760 TCCCAGACAGGAGGCCTT 59.461 61.111 6.77 0.00 41.22 4.35
156 157 1.920325 TCCCAGACAGGAGGCCTTG 60.920 63.158 6.77 4.38 41.22 3.61
157 158 2.045536 CCAGACAGGAGGCCTTGC 60.046 66.667 6.77 0.00 41.22 4.01
168 169 1.429423 GGCCTTGCCTTTTCGATCG 59.571 57.895 9.36 9.36 46.69 3.69
169 170 1.024579 GGCCTTGCCTTTTCGATCGA 61.025 55.000 15.15 15.15 46.69 3.59
170 171 1.017387 GCCTTGCCTTTTCGATCGAT 58.983 50.000 20.18 0.00 0.00 3.59
171 172 1.268234 GCCTTGCCTTTTCGATCGATG 60.268 52.381 20.18 11.94 0.00 3.84
172 173 2.009774 CCTTGCCTTTTCGATCGATGT 58.990 47.619 20.18 0.00 0.00 3.06
173 174 2.420022 CCTTGCCTTTTCGATCGATGTT 59.580 45.455 20.18 0.00 0.00 2.71
174 175 3.419915 CTTGCCTTTTCGATCGATGTTG 58.580 45.455 20.18 9.52 0.00 3.33
175 176 1.130373 TGCCTTTTCGATCGATGTTGC 59.870 47.619 20.18 18.73 0.00 4.17
176 177 1.398390 GCCTTTTCGATCGATGTTGCT 59.602 47.619 20.18 0.00 0.00 3.91
177 178 2.159517 GCCTTTTCGATCGATGTTGCTT 60.160 45.455 20.18 0.00 0.00 3.91
178 179 3.670627 GCCTTTTCGATCGATGTTGCTTT 60.671 43.478 20.18 0.00 0.00 3.51
179 180 4.475944 CCTTTTCGATCGATGTTGCTTTT 58.524 39.130 20.18 0.00 0.00 2.27
180 181 4.321745 CCTTTTCGATCGATGTTGCTTTTG 59.678 41.667 20.18 0.98 0.00 2.44
181 182 4.481930 TTTCGATCGATGTTGCTTTTGT 57.518 36.364 20.18 0.00 0.00 2.83
182 183 3.454042 TCGATCGATGTTGCTTTTGTG 57.546 42.857 15.15 0.00 0.00 3.33
183 184 1.906966 CGATCGATGTTGCTTTTGTGC 59.093 47.619 10.26 0.00 0.00 4.57
184 185 2.413239 CGATCGATGTTGCTTTTGTGCT 60.413 45.455 10.26 0.00 0.00 4.40
185 186 3.181521 CGATCGATGTTGCTTTTGTGCTA 60.182 43.478 10.26 0.00 0.00 3.49
186 187 3.811722 TCGATGTTGCTTTTGTGCTAG 57.188 42.857 0.00 0.00 0.00 3.42
187 188 2.095768 TCGATGTTGCTTTTGTGCTAGC 60.096 45.455 8.10 8.10 37.89 3.42
188 189 2.599659 GATGTTGCTTTTGTGCTAGCC 58.400 47.619 13.29 4.15 36.56 3.93
189 190 1.691196 TGTTGCTTTTGTGCTAGCCT 58.309 45.000 13.29 0.00 36.56 4.58
190 191 2.031120 TGTTGCTTTTGTGCTAGCCTT 58.969 42.857 13.29 0.00 36.56 4.35
191 192 2.034558 TGTTGCTTTTGTGCTAGCCTTC 59.965 45.455 13.29 3.48 36.56 3.46
192 193 2.276732 TGCTTTTGTGCTAGCCTTCT 57.723 45.000 13.29 0.00 36.56 2.85
193 194 2.586425 TGCTTTTGTGCTAGCCTTCTT 58.414 42.857 13.29 0.00 36.56 2.52
194 195 3.750371 TGCTTTTGTGCTAGCCTTCTTA 58.250 40.909 13.29 0.00 36.56 2.10
195 196 4.141287 TGCTTTTGTGCTAGCCTTCTTAA 58.859 39.130 13.29 0.00 36.56 1.85
196 197 4.216257 TGCTTTTGTGCTAGCCTTCTTAAG 59.784 41.667 13.29 9.25 36.56 1.85
210 211 6.877611 CCTTCTTAAGGCAAACTTGTCTAA 57.122 37.500 1.85 0.00 43.42 2.10
211 212 6.669278 CCTTCTTAAGGCAAACTTGTCTAAC 58.331 40.000 1.85 0.00 43.42 2.34
212 213 6.486993 CCTTCTTAAGGCAAACTTGTCTAACT 59.513 38.462 1.85 0.00 43.42 2.24
213 214 7.013369 CCTTCTTAAGGCAAACTTGTCTAACTT 59.987 37.037 1.85 0.00 43.42 2.66
214 215 8.967664 TTCTTAAGGCAAACTTGTCTAACTTA 57.032 30.769 1.85 0.00 43.42 2.24
215 216 9.569122 TTCTTAAGGCAAACTTGTCTAACTTAT 57.431 29.630 1.85 0.00 43.42 1.73
216 217 8.999431 TCTTAAGGCAAACTTGTCTAACTTATG 58.001 33.333 1.85 0.00 43.42 1.90
217 218 8.685838 TTAAGGCAAACTTGTCTAACTTATGT 57.314 30.769 0.00 0.00 43.42 2.29
218 219 6.803154 AGGCAAACTTGTCTAACTTATGTC 57.197 37.500 0.00 0.00 42.19 3.06
219 220 6.534634 AGGCAAACTTGTCTAACTTATGTCT 58.465 36.000 0.00 0.00 42.19 3.41
220 221 6.428159 AGGCAAACTTGTCTAACTTATGTCTG 59.572 38.462 0.00 0.00 42.19 3.51
221 222 6.204882 GGCAAACTTGTCTAACTTATGTCTGT 59.795 38.462 0.00 0.00 0.00 3.41
222 223 7.386848 GGCAAACTTGTCTAACTTATGTCTGTA 59.613 37.037 0.00 0.00 0.00 2.74
223 224 8.221766 GCAAACTTGTCTAACTTATGTCTGTAC 58.778 37.037 0.00 0.00 0.00 2.90
224 225 9.477484 CAAACTTGTCTAACTTATGTCTGTACT 57.523 33.333 0.00 0.00 0.00 2.73
225 226 9.694137 AAACTTGTCTAACTTATGTCTGTACTC 57.306 33.333 0.00 0.00 0.00 2.59
226 227 8.405418 ACTTGTCTAACTTATGTCTGTACTCA 57.595 34.615 0.00 0.00 0.00 3.41
227 228 8.516234 ACTTGTCTAACTTATGTCTGTACTCAG 58.484 37.037 0.00 0.00 42.54 3.35
228 229 8.631480 TTGTCTAACTTATGTCTGTACTCAGA 57.369 34.615 0.00 0.00 46.85 3.27
241 242 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
242 243 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
243 244 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
244 245 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
245 246 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
246 247 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
247 248 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
248 249 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
249 250 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
250 251 0.106708 TTGTTGCTTCCGCTGACTCT 59.893 50.000 0.00 0.00 36.97 3.24
251 252 0.106708 TGTTGCTTCCGCTGACTCTT 59.893 50.000 0.00 0.00 36.97 2.85
252 253 0.514691 GTTGCTTCCGCTGACTCTTG 59.485 55.000 0.00 0.00 36.97 3.02
253 254 0.106708 TTGCTTCCGCTGACTCTTGT 59.893 50.000 0.00 0.00 36.97 3.16
254 255 0.601046 TGCTTCCGCTGACTCTTGTG 60.601 55.000 0.00 0.00 36.97 3.33
255 256 0.601311 GCTTCCGCTGACTCTTGTGT 60.601 55.000 0.00 0.00 0.00 3.72
256 257 1.336887 GCTTCCGCTGACTCTTGTGTA 60.337 52.381 0.00 0.00 0.00 2.90
257 258 2.675317 GCTTCCGCTGACTCTTGTGTAT 60.675 50.000 0.00 0.00 0.00 2.29
258 259 3.589988 CTTCCGCTGACTCTTGTGTATT 58.410 45.455 0.00 0.00 0.00 1.89
259 260 3.232213 TCCGCTGACTCTTGTGTATTC 57.768 47.619 0.00 0.00 0.00 1.75
260 261 1.920574 CCGCTGACTCTTGTGTATTCG 59.079 52.381 0.00 0.00 0.00 3.34
261 262 2.415491 CCGCTGACTCTTGTGTATTCGA 60.415 50.000 0.00 0.00 0.00 3.71
262 263 2.848887 CGCTGACTCTTGTGTATTCGAG 59.151 50.000 0.00 0.00 0.00 4.04
263 264 2.600867 GCTGACTCTTGTGTATTCGAGC 59.399 50.000 0.00 0.00 0.00 5.03
264 265 3.182967 CTGACTCTTGTGTATTCGAGCC 58.817 50.000 0.00 0.00 0.00 4.70
265 266 2.094182 TGACTCTTGTGTATTCGAGCCC 60.094 50.000 0.00 0.00 0.00 5.19
266 267 2.166664 GACTCTTGTGTATTCGAGCCCT 59.833 50.000 0.00 0.00 0.00 5.19
267 268 2.166664 ACTCTTGTGTATTCGAGCCCTC 59.833 50.000 0.00 0.00 0.00 4.30
293 294 3.255888 GCCCCTGGCTTGTAATATAAAGC 59.744 47.826 8.49 8.49 46.69 3.51
294 295 4.729868 CCCCTGGCTTGTAATATAAAGCT 58.270 43.478 14.07 0.00 46.42 3.74
295 296 5.140454 CCCCTGGCTTGTAATATAAAGCTT 58.860 41.667 14.07 0.00 46.42 3.74
296 297 5.010012 CCCCTGGCTTGTAATATAAAGCTTG 59.990 44.000 0.00 9.05 46.42 4.01
297 298 5.594317 CCCTGGCTTGTAATATAAAGCTTGT 59.406 40.000 0.00 0.00 46.42 3.16
298 299 6.770785 CCCTGGCTTGTAATATAAAGCTTGTA 59.229 38.462 0.00 0.00 46.42 2.41
299 300 7.448469 CCCTGGCTTGTAATATAAAGCTTGTAT 59.552 37.037 0.00 3.21 46.42 2.29
300 301 8.850156 CCTGGCTTGTAATATAAAGCTTGTATT 58.150 33.333 16.85 16.85 46.42 1.89
327 328 9.950680 ATTTTATTTGTGTCTAGAGTTGTGTTG 57.049 29.630 0.00 0.00 0.00 3.33
328 329 8.500753 TTTATTTGTGTCTAGAGTTGTGTTGT 57.499 30.769 0.00 0.00 0.00 3.32
329 330 5.794687 TTTGTGTCTAGAGTTGTGTTGTG 57.205 39.130 0.00 0.00 0.00 3.33
330 331 4.729227 TGTGTCTAGAGTTGTGTTGTGA 57.271 40.909 0.00 0.00 0.00 3.58
331 332 5.276461 TGTGTCTAGAGTTGTGTTGTGAT 57.724 39.130 0.00 0.00 0.00 3.06
332 333 6.399639 TGTGTCTAGAGTTGTGTTGTGATA 57.600 37.500 0.00 0.00 0.00 2.15
333 334 6.993079 TGTGTCTAGAGTTGTGTTGTGATAT 58.007 36.000 0.00 0.00 0.00 1.63
334 335 7.090808 TGTGTCTAGAGTTGTGTTGTGATATC 58.909 38.462 0.00 0.00 0.00 1.63
335 336 7.039714 TGTGTCTAGAGTTGTGTTGTGATATCT 60.040 37.037 3.98 0.00 0.00 1.98
336 337 7.815068 GTGTCTAGAGTTGTGTTGTGATATCTT 59.185 37.037 3.98 0.00 0.00 2.40
337 338 8.029522 TGTCTAGAGTTGTGTTGTGATATCTTC 58.970 37.037 3.98 0.00 0.00 2.87
338 339 7.489757 GTCTAGAGTTGTGTTGTGATATCTTCC 59.510 40.741 3.98 0.00 0.00 3.46
339 340 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
340 341 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
341 342 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
342 343 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
343 344 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
344 345 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
345 346 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
346 347 4.020573 TGTTGTGATATCTTCCCGTGAGTT 60.021 41.667 3.98 0.00 0.00 3.01
347 348 4.819105 TGTGATATCTTCCCGTGAGTTT 57.181 40.909 3.98 0.00 0.00 2.66
348 349 4.755411 TGTGATATCTTCCCGTGAGTTTC 58.245 43.478 3.98 0.00 0.00 2.78
349 350 4.466370 TGTGATATCTTCCCGTGAGTTTCT 59.534 41.667 3.98 0.00 0.00 2.52
350 351 4.806247 GTGATATCTTCCCGTGAGTTTCTG 59.194 45.833 3.98 0.00 0.00 3.02
351 352 4.709886 TGATATCTTCCCGTGAGTTTCTGA 59.290 41.667 3.98 0.00 0.00 3.27
352 353 5.363868 TGATATCTTCCCGTGAGTTTCTGAT 59.636 40.000 3.98 0.00 0.00 2.90
353 354 3.594603 TCTTCCCGTGAGTTTCTGATC 57.405 47.619 0.00 0.00 0.00 2.92
354 355 3.165875 TCTTCCCGTGAGTTTCTGATCT 58.834 45.455 0.00 0.00 0.00 2.75
355 356 3.578716 TCTTCCCGTGAGTTTCTGATCTT 59.421 43.478 0.00 0.00 0.00 2.40
356 357 3.319137 TCCCGTGAGTTTCTGATCTTG 57.681 47.619 0.00 0.00 0.00 3.02
357 358 2.897326 TCCCGTGAGTTTCTGATCTTGA 59.103 45.455 0.00 0.00 0.00 3.02
358 359 3.515502 TCCCGTGAGTTTCTGATCTTGAT 59.484 43.478 0.00 0.00 0.00 2.57
359 360 3.868077 CCCGTGAGTTTCTGATCTTGATC 59.132 47.826 3.82 3.82 0.00 2.92
360 361 3.549471 CCGTGAGTTTCTGATCTTGATCG 59.451 47.826 6.19 2.26 0.00 3.69
361 362 4.169508 CGTGAGTTTCTGATCTTGATCGT 58.830 43.478 6.19 0.00 0.00 3.73
362 363 5.332707 CGTGAGTTTCTGATCTTGATCGTA 58.667 41.667 6.19 0.00 0.00 3.43
363 364 5.228220 CGTGAGTTTCTGATCTTGATCGTAC 59.772 44.000 6.19 2.48 0.00 3.67
364 365 6.093404 GTGAGTTTCTGATCTTGATCGTACA 58.907 40.000 6.19 0.00 0.00 2.90
365 366 6.034044 GTGAGTTTCTGATCTTGATCGTACAC 59.966 42.308 6.19 0.00 0.00 2.90
366 367 6.025749 AGTTTCTGATCTTGATCGTACACA 57.974 37.500 6.19 0.00 0.00 3.72
367 368 6.634805 AGTTTCTGATCTTGATCGTACACAT 58.365 36.000 6.19 0.00 0.00 3.21
368 369 7.099764 AGTTTCTGATCTTGATCGTACACATT 58.900 34.615 6.19 0.00 0.00 2.71
369 370 7.604164 AGTTTCTGATCTTGATCGTACACATTT 59.396 33.333 6.19 0.00 0.00 2.32
370 371 8.869897 GTTTCTGATCTTGATCGTACACATTTA 58.130 33.333 6.19 0.00 0.00 1.40
371 372 7.987268 TCTGATCTTGATCGTACACATTTAC 57.013 36.000 6.19 0.00 0.00 2.01
372 373 6.691388 TCTGATCTTGATCGTACACATTTACG 59.309 38.462 6.19 0.00 45.10 3.18
373 374 6.327154 TGATCTTGATCGTACACATTTACGT 58.673 36.000 0.00 0.00 44.28 3.57
374 375 6.252655 TGATCTTGATCGTACACATTTACGTG 59.747 38.462 0.00 0.00 44.28 4.49
389 390 8.257166 CACATTTACGTGTATGATTAGTGTACG 58.743 37.037 15.83 0.00 36.28 3.67
390 391 8.183536 ACATTTACGTGTATGATTAGTGTACGA 58.816 33.333 15.83 0.00 34.52 3.43
391 392 9.177304 CATTTACGTGTATGATTAGTGTACGAT 57.823 33.333 0.00 0.00 34.52 3.73
392 393 8.772306 TTTACGTGTATGATTAGTGTACGATC 57.228 34.615 0.00 0.00 34.52 3.69
393 394 5.438117 ACGTGTATGATTAGTGTACGATCG 58.562 41.667 14.88 14.88 34.52 3.69
394 395 5.234972 ACGTGTATGATTAGTGTACGATCGA 59.765 40.000 24.34 2.23 34.52 3.59
395 396 6.131389 CGTGTATGATTAGTGTACGATCGAA 58.869 40.000 24.34 4.42 32.36 3.71
396 397 6.795593 CGTGTATGATTAGTGTACGATCGAAT 59.204 38.462 24.34 9.74 32.36 3.34
397 398 7.006298 CGTGTATGATTAGTGTACGATCGAATC 59.994 40.741 24.34 18.33 32.36 2.52
406 407 2.355956 GATCGAATCGGGGGCGTC 60.356 66.667 1.76 0.00 0.00 5.19
407 408 3.146726 GATCGAATCGGGGGCGTCA 62.147 63.158 1.76 0.00 0.00 4.35
408 409 3.441011 ATCGAATCGGGGGCGTCAC 62.441 63.158 1.76 0.00 0.00 3.67
409 410 4.444838 CGAATCGGGGGCGTCACA 62.445 66.667 0.00 0.00 0.00 3.58
424 425 3.181520 GCGTCACATGTAACCAGAATGAC 60.182 47.826 0.00 0.00 39.69 3.06
443 444 4.967036 TGACATGAAGTTGTGTCCATGTA 58.033 39.130 0.00 0.45 46.49 2.29
446 447 4.701651 ACATGAAGTTGTGTCCATGTATGG 59.298 41.667 0.00 4.48 45.21 2.74
470 471 4.275810 CAATCAAGGATGGACAAGGACAT 58.724 43.478 0.00 0.00 0.00 3.06
483 484 7.106890 TGGACAAGGACATAATCAAAATACGA 58.893 34.615 0.00 0.00 0.00 3.43
490 491 4.873827 ACATAATCAAAATACGACGGTGCT 59.126 37.500 0.00 0.00 0.00 4.40
492 493 4.759516 AATCAAAATACGACGGTGCTTT 57.240 36.364 0.00 0.00 0.00 3.51
502 503 1.001706 GACGGTGCTTTCCCAAAGAAC 60.002 52.381 0.01 0.00 44.82 3.01
526 527 1.735386 CGATGATGGATGATGGCCTC 58.265 55.000 3.32 0.00 0.00 4.70
539 540 2.104859 GGCCTCGACGTTTAAGCCC 61.105 63.158 8.87 0.00 34.23 5.19
606 607 3.429410 GGCAATGCCTTCGCTTAAAGAAT 60.429 43.478 18.47 0.00 46.69 2.40
620 621 6.358030 CGCTTAAAGAATTTATGGATTGCTCG 59.642 38.462 0.00 0.00 40.76 5.03
628 629 5.713792 TTTATGGATTGCTCGAAACCAAA 57.286 34.783 0.00 0.00 34.28 3.28
649 651 8.004801 ACCAAATTTTAGGGGATCCTATTACAG 58.995 37.037 12.58 0.00 44.51 2.74
651 653 9.067986 CAAATTTTAGGGGATCCTATTACAGTC 57.932 37.037 12.58 0.00 44.51 3.51
652 654 6.758806 TTTTAGGGGATCCTATTACAGTCC 57.241 41.667 12.58 0.32 44.51 3.85
655 657 4.909284 AGGGGATCCTATTACAGTCCTTT 58.091 43.478 12.58 0.00 42.75 3.11
657 659 5.369993 AGGGGATCCTATTACAGTCCTTTTC 59.630 44.000 12.58 0.00 42.75 2.29
658 660 5.369993 GGGGATCCTATTACAGTCCTTTTCT 59.630 44.000 12.58 0.00 0.00 2.52
660 662 7.256368 GGGGATCCTATTACAGTCCTTTTCTAG 60.256 44.444 12.58 0.00 0.00 2.43
661 663 7.509659 GGGATCCTATTACAGTCCTTTTCTAGA 59.490 40.741 12.58 0.00 0.00 2.43
662 664 9.095700 GGATCCTATTACAGTCCTTTTCTAGAT 57.904 37.037 3.84 0.00 0.00 1.98
788 874 1.116308 GCCTCTCTGGAAGTAGGACC 58.884 60.000 0.00 0.00 39.52 4.46
793 879 2.024273 TCTCTGGAAGTAGGACCCGATT 60.024 50.000 0.00 0.00 33.76 3.34
794 880 2.362717 CTCTGGAAGTAGGACCCGATTC 59.637 54.545 0.00 0.00 33.76 2.52
815 901 8.589629 CGATTCTCCTGAAAAATATTTTGCAAG 58.410 33.333 19.87 15.07 35.38 4.01
1170 1273 2.485795 CGAAGGGAGCGAGGAGGAG 61.486 68.421 0.00 0.00 0.00 3.69
1171 1274 2.042435 AAGGGAGCGAGGAGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
1172 1275 2.575455 GAAGGGAGCGAGGAGGAGGA 62.575 65.000 0.00 0.00 0.00 3.71
1173 1276 2.520741 GGGAGCGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1174 1277 3.223589 GGAGCGAGGAGGAGGAGC 61.224 72.222 0.00 0.00 0.00 4.70
1175 1278 3.591835 GAGCGAGGAGGAGGAGCG 61.592 72.222 0.00 0.00 0.00 5.03
1176 1279 4.116585 AGCGAGGAGGAGGAGCGA 62.117 66.667 0.00 0.00 0.00 4.93
1177 1280 3.591835 GCGAGGAGGAGGAGCGAG 61.592 72.222 0.00 0.00 0.00 5.03
1178 1281 2.904866 CGAGGAGGAGGAGCGAGG 60.905 72.222 0.00 0.00 0.00 4.63
1179 1282 2.598467 GAGGAGGAGGAGCGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
1180 1283 1.528309 GAGGAGGAGGAGCGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
1181 1284 2.520741 GGAGGAGGAGCGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1182 1285 2.598467 GAGGAGGAGCGAGGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
1348 1451 1.990614 GCCGTCTTCTTCTCCCCCT 60.991 63.158 0.00 0.00 0.00 4.79
1469 1573 1.760029 GTGAGATCTCCTCCCCACTTC 59.240 57.143 20.03 0.00 41.25 3.01
1487 1591 3.791887 ACTTCGACGATTCGCAGAATTAG 59.208 43.478 14.33 8.02 45.90 1.73
1530 1634 1.959282 GGGCTTGGATCATGTGATTCC 59.041 52.381 0.00 2.66 34.37 3.01
1652 1757 7.853524 TGAAAATTCATTTGATCTGTTGTTGC 58.146 30.769 0.00 0.00 31.01 4.17
1653 1758 7.494952 TGAAAATTCATTTGATCTGTTGTTGCA 59.505 29.630 0.00 0.00 31.01 4.08
1761 1867 4.036262 TCAACTGAAACTTTGGTCCATTCG 59.964 41.667 0.00 0.00 0.00 3.34
1765 1871 4.204012 TGAAACTTTGGTCCATTCGTCTT 58.796 39.130 0.00 0.00 0.00 3.01
1811 1917 2.407090 GTTGCTTGTTTTGAGCCATCC 58.593 47.619 0.00 0.00 39.38 3.51
1859 1965 3.350219 TTTCTGTGCTATTCCAGTCCC 57.650 47.619 0.00 0.00 0.00 4.46
1861 1967 2.265367 TCTGTGCTATTCCAGTCCCAA 58.735 47.619 0.00 0.00 0.00 4.12
1863 1969 1.281867 TGTGCTATTCCAGTCCCAAGG 59.718 52.381 0.00 0.00 0.00 3.61
1864 1970 1.559682 GTGCTATTCCAGTCCCAAGGA 59.440 52.381 0.00 0.00 0.00 3.36
1870 1976 1.352083 TCCAGTCCCAAGGAACAGAG 58.648 55.000 0.00 0.00 31.38 3.35
1877 1983 6.472887 CAGTCCCAAGGAACAGAGTAAATAA 58.527 40.000 0.00 0.00 31.38 1.40
1940 2046 6.316140 GTGTGAAACCATATCTCTACAATGCA 59.684 38.462 0.00 0.00 34.36 3.96
1941 2047 6.883756 TGTGAAACCATATCTCTACAATGCAA 59.116 34.615 0.00 0.00 34.36 4.08
1947 2053 6.488006 ACCATATCTCTACAATGCAACCAATC 59.512 38.462 0.00 0.00 0.00 2.67
1948 2054 6.713903 CCATATCTCTACAATGCAACCAATCT 59.286 38.462 0.00 0.00 0.00 2.40
1951 2057 9.851686 ATATCTCTACAATGCAACCAATCTTTA 57.148 29.630 0.00 0.00 0.00 1.85
1952 2058 7.615582 TCTCTACAATGCAACCAATCTTTAG 57.384 36.000 0.00 0.00 0.00 1.85
1954 2060 7.334421 TCTCTACAATGCAACCAATCTTTAGTC 59.666 37.037 0.00 0.00 0.00 2.59
1956 2062 6.017400 ACAATGCAACCAATCTTTAGTCTG 57.983 37.500 0.00 0.00 0.00 3.51
1957 2063 5.047802 ACAATGCAACCAATCTTTAGTCTGG 60.048 40.000 0.00 0.00 34.95 3.86
1958 2064 2.819608 TGCAACCAATCTTTAGTCTGGC 59.180 45.455 0.00 0.00 31.74 4.85
1959 2065 2.819608 GCAACCAATCTTTAGTCTGGCA 59.180 45.455 0.00 0.00 31.74 4.92
2070 2210 3.747976 GCGCCCGATGCTTGGTTT 61.748 61.111 0.00 0.00 38.05 3.27
2161 2301 5.822519 TCCACACCTAATTAGCATAAGCAAG 59.177 40.000 6.99 0.00 45.49 4.01
2174 2314 2.514458 AAGCAAGTGTTATCCCAGGG 57.486 50.000 0.00 0.00 0.00 4.45
2439 2579 6.312918 TGGTGAAACTAACGCTAATTGATCTC 59.687 38.462 0.00 0.00 36.74 2.75
2547 2687 2.560542 TGGCATGGGTTATGTGACAAAC 59.439 45.455 0.00 0.00 39.08 2.93
2612 2752 9.155975 TGAGCAGAGTATTTTATTTGTCTTCTC 57.844 33.333 0.00 0.00 0.00 2.87
2680 2820 4.381411 GGGGCTGATAGTTAGTGATTCAC 58.619 47.826 8.82 8.82 34.10 3.18
2863 3003 2.168496 CTGGAAGACGTACTGAGGGAA 58.832 52.381 0.00 0.00 34.07 3.97
3068 3209 3.262420 CTGTAGTTCCTTTGCACGCTAT 58.738 45.455 0.00 0.00 0.00 2.97
3114 3255 6.793505 AGTATTCCCTCCGATCCATAATAC 57.206 41.667 0.00 0.00 0.00 1.89
3115 3256 6.261435 AGTATTCCCTCCGATCCATAATACA 58.739 40.000 0.00 0.00 33.07 2.29
3369 3518 2.237393 GAGTGGATCCAGCTGATGTC 57.763 55.000 16.81 9.73 32.41 3.06
3445 3594 5.963176 TGCAGCATCAAAAGTATGAAAGA 57.037 34.783 0.00 0.00 32.06 2.52
3470 3619 5.014123 TCCACCTACCAATTCTTGACTGAAT 59.986 40.000 0.00 0.00 38.19 2.57
3473 3622 6.600822 CACCTACCAATTCTTGACTGAATGAT 59.399 38.462 0.00 0.00 36.84 2.45
3474 3623 7.770433 CACCTACCAATTCTTGACTGAATGATA 59.230 37.037 0.00 0.00 36.84 2.15
3915 4065 9.897744 TTGAGACAAAATGTGAGTTTTCATATC 57.102 29.630 0.00 0.00 34.48 1.63
4183 4340 1.069022 CAACACTCTTGTCAATGCCCG 60.069 52.381 0.00 0.00 33.55 6.13
4201 4358 1.130373 CCGTACATGCTTTGTTGCGAT 59.870 47.619 13.80 0.00 39.87 4.58
4734 4891 1.453155 TCCTTTCAAGGCGCAAGATC 58.547 50.000 10.83 0.00 46.06 2.75
4892 5056 2.978156 AAAATCTCCCAAGTGCTCCA 57.022 45.000 0.00 0.00 0.00 3.86
4894 5058 1.067295 AATCTCCCAAGTGCTCCACA 58.933 50.000 0.00 0.00 36.74 4.17
4897 5061 0.325933 CTCCCAAGTGCTCCACATGA 59.674 55.000 0.00 0.00 35.44 3.07
5369 5539 0.524862 CAATGTGCCTCTGCTTGTCC 59.475 55.000 0.00 0.00 38.71 4.02
5415 5585 7.121020 GCAAGATCAAGGAAGAGAAGAGAAAAT 59.879 37.037 0.00 0.00 0.00 1.82
5431 5601 6.777782 AGAGAAAATAGATATTGCTGAGGGG 58.222 40.000 0.00 0.00 0.00 4.79
5445 5616 4.162690 GGGGGTGAGGCTGTAGCG 62.163 72.222 0.00 0.00 43.26 4.26
5496 5667 1.599576 GAGAGGAGGGCTTGGTCAC 59.400 63.158 0.00 0.00 0.00 3.67
5580 5754 2.629617 GCATGGCATAAAAGGGCTATGT 59.370 45.455 0.00 0.00 46.72 2.29
5581 5755 3.826157 GCATGGCATAAAAGGGCTATGTA 59.174 43.478 0.00 0.00 46.72 2.29
5582 5756 4.082571 GCATGGCATAAAAGGGCTATGTAG 60.083 45.833 0.00 0.00 46.72 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.219417 TGCATCAACCAGAAAGAAGAAAAA 57.781 33.333 0.00 0.00 0.00 1.94
27 28 5.850557 TGCATCAACCAGAAAGAAGAAAA 57.149 34.783 0.00 0.00 0.00 2.29
28 29 5.591099 GTTGCATCAACCAGAAAGAAGAAA 58.409 37.500 0.00 0.00 38.30 2.52
29 30 5.186996 GTTGCATCAACCAGAAAGAAGAA 57.813 39.130 0.00 0.00 38.30 2.52
30 31 4.836125 GTTGCATCAACCAGAAAGAAGA 57.164 40.909 0.00 0.00 38.30 2.87
41 42 1.131126 CCGACATCTGGTTGCATCAAC 59.869 52.381 1.33 1.33 42.89 3.18
42 43 1.003003 TCCGACATCTGGTTGCATCAA 59.997 47.619 0.00 0.00 0.00 2.57
43 44 0.612744 TCCGACATCTGGTTGCATCA 59.387 50.000 0.00 0.00 0.00 3.07
44 45 1.293924 CTCCGACATCTGGTTGCATC 58.706 55.000 0.00 0.00 0.00 3.91
45 46 0.745845 GCTCCGACATCTGGTTGCAT 60.746 55.000 0.00 0.00 0.00 3.96
46 47 1.375908 GCTCCGACATCTGGTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
47 48 2.109126 GGCTCCGACATCTGGTTGC 61.109 63.158 0.00 0.00 0.00 4.17
48 49 1.450312 GGGCTCCGACATCTGGTTG 60.450 63.158 0.00 0.00 0.00 3.77
49 50 1.903877 CTGGGCTCCGACATCTGGTT 61.904 60.000 0.00 0.00 0.00 3.67
50 51 2.284625 TGGGCTCCGACATCTGGT 60.285 61.111 0.00 0.00 0.00 4.00
51 52 2.503061 CTGGGCTCCGACATCTGG 59.497 66.667 0.00 0.00 0.00 3.86
52 53 2.025767 CTCCTGGGCTCCGACATCTG 62.026 65.000 0.00 0.00 0.00 2.90
53 54 1.760086 CTCCTGGGCTCCGACATCT 60.760 63.158 0.00 0.00 0.00 2.90
54 55 2.818132 CTCCTGGGCTCCGACATC 59.182 66.667 0.00 0.00 0.00 3.06
55 56 3.474570 GCTCCTGGGCTCCGACAT 61.475 66.667 0.00 0.00 0.00 3.06
60 61 2.771762 ATCTGGCTCCTGGGCTCC 60.772 66.667 7.03 0.98 41.48 4.70
61 62 2.509916 CATCTGGCTCCTGGGCTC 59.490 66.667 7.03 0.00 41.48 4.70
62 63 3.806667 GCATCTGGCTCCTGGGCT 61.807 66.667 7.03 0.00 41.48 5.19
63 64 4.891037 GGCATCTGGCTCCTGGGC 62.891 72.222 0.00 0.00 44.01 5.36
64 65 3.414193 TGGCATCTGGCTCCTGGG 61.414 66.667 5.30 0.00 44.01 4.45
65 66 2.124403 GTGGCATCTGGCTCCTGG 60.124 66.667 5.30 0.00 44.01 4.45
66 67 2.124403 GGTGGCATCTGGCTCCTG 60.124 66.667 15.29 0.00 46.64 3.86
69 70 4.479993 AGCGGTGGCATCTGGCTC 62.480 66.667 5.30 1.43 44.01 4.70
70 71 4.790962 CAGCGGTGGCATCTGGCT 62.791 66.667 6.74 0.00 44.01 4.75
71 72 4.783621 TCAGCGGTGGCATCTGGC 62.784 66.667 15.67 2.58 43.41 4.85
72 73 2.184830 CATCAGCGGTGGCATCTGG 61.185 63.158 15.67 0.00 43.41 3.86
73 74 2.831366 GCATCAGCGGTGGCATCTG 61.831 63.158 15.67 6.27 43.41 2.90
74 75 2.515523 GCATCAGCGGTGGCATCT 60.516 61.111 15.67 0.00 43.41 2.90
75 76 2.665008 TAGGCATCAGCGGTGGCATC 62.665 60.000 15.67 2.99 43.86 3.91
76 77 2.745308 TAGGCATCAGCGGTGGCAT 61.745 57.895 15.67 11.35 43.86 4.40
77 78 3.398310 TAGGCATCAGCGGTGGCA 61.398 61.111 15.67 0.00 43.86 4.92
78 79 2.028125 TAGTAGGCATCAGCGGTGGC 62.028 60.000 15.67 11.03 43.41 5.01
79 80 0.249489 GTAGTAGGCATCAGCGGTGG 60.249 60.000 15.67 0.04 43.41 4.61
80 81 0.747255 AGTAGTAGGCATCAGCGGTG 59.253 55.000 8.67 8.67 43.41 4.94
81 82 1.955080 GTAGTAGTAGGCATCAGCGGT 59.045 52.381 0.00 0.00 43.41 5.68
82 83 1.069159 CGTAGTAGTAGGCATCAGCGG 60.069 57.143 0.00 0.00 43.41 5.52
83 84 1.602851 ACGTAGTAGTAGGCATCAGCG 59.397 52.381 0.00 0.00 41.94 5.18
84 85 2.287668 CCACGTAGTAGTAGGCATCAGC 60.288 54.545 0.00 0.00 41.61 4.26
85 86 3.211865 TCCACGTAGTAGTAGGCATCAG 58.788 50.000 0.00 0.00 41.61 2.90
86 87 3.118149 TCTCCACGTAGTAGTAGGCATCA 60.118 47.826 0.00 0.00 41.61 3.07
87 88 3.250521 GTCTCCACGTAGTAGTAGGCATC 59.749 52.174 0.00 0.00 41.61 3.91
88 89 3.212685 GTCTCCACGTAGTAGTAGGCAT 58.787 50.000 0.00 0.00 41.61 4.40
89 90 2.636830 GTCTCCACGTAGTAGTAGGCA 58.363 52.381 0.00 0.00 41.61 4.75
90 91 1.946081 GGTCTCCACGTAGTAGTAGGC 59.054 57.143 0.00 0.00 41.61 3.93
91 92 2.208431 CGGTCTCCACGTAGTAGTAGG 58.792 57.143 0.00 0.00 41.61 3.18
92 93 1.596727 GCGGTCTCCACGTAGTAGTAG 59.403 57.143 0.00 0.00 41.61 2.57
93 94 1.656652 GCGGTCTCCACGTAGTAGTA 58.343 55.000 0.00 0.00 41.61 1.82
94 95 1.028868 GGCGGTCTCCACGTAGTAGT 61.029 60.000 0.00 0.00 41.61 2.73
95 96 1.726265 GGCGGTCTCCACGTAGTAG 59.274 63.158 0.00 0.00 41.61 2.57
96 97 2.108514 CGGCGGTCTCCACGTAGTA 61.109 63.158 0.00 0.00 41.61 1.82
98 99 3.129502 TCGGCGGTCTCCACGTAG 61.130 66.667 7.21 0.00 0.00 3.51
99 100 3.434319 GTCGGCGGTCTCCACGTA 61.434 66.667 7.21 0.00 0.00 3.57
102 103 4.773117 GTCGTCGGCGGTCTCCAC 62.773 72.222 10.62 0.00 38.89 4.02
105 106 4.477975 CTGGTCGTCGGCGGTCTC 62.478 72.222 10.62 0.00 38.89 3.36
110 111 3.109612 CTACTCCTGGTCGTCGGCG 62.110 68.421 1.15 1.15 39.92 6.46
111 112 1.593296 AACTACTCCTGGTCGTCGGC 61.593 60.000 0.00 0.00 0.00 5.54
112 113 1.669779 CTAACTACTCCTGGTCGTCGG 59.330 57.143 0.00 0.00 0.00 4.79
113 114 1.669779 CCTAACTACTCCTGGTCGTCG 59.330 57.143 0.00 0.00 0.00 5.12
114 115 2.944349 CTCCTAACTACTCCTGGTCGTC 59.056 54.545 0.00 0.00 0.00 4.20
115 116 2.356947 CCTCCTAACTACTCCTGGTCGT 60.357 54.545 0.00 0.00 0.00 4.34
116 117 2.299521 CCTCCTAACTACTCCTGGTCG 58.700 57.143 0.00 0.00 0.00 4.79
117 118 2.033372 GCCTCCTAACTACTCCTGGTC 58.967 57.143 0.00 0.00 0.00 4.02
118 119 1.646977 AGCCTCCTAACTACTCCTGGT 59.353 52.381 0.00 0.00 0.00 4.00
119 120 2.312390 GAGCCTCCTAACTACTCCTGG 58.688 57.143 0.00 0.00 0.00 4.45
120 121 2.312390 GGAGCCTCCTAACTACTCCTG 58.688 57.143 2.64 0.00 42.99 3.86
121 122 1.218450 GGGAGCCTCCTAACTACTCCT 59.782 57.143 11.29 0.00 45.16 3.69
122 123 1.063114 TGGGAGCCTCCTAACTACTCC 60.063 57.143 11.29 0.00 45.10 3.85
123 124 2.091775 TCTGGGAGCCTCCTAACTACTC 60.092 54.545 11.29 0.00 36.57 2.59
124 125 1.930914 TCTGGGAGCCTCCTAACTACT 59.069 52.381 11.29 0.00 36.57 2.57
125 126 2.033372 GTCTGGGAGCCTCCTAACTAC 58.967 57.143 11.29 0.00 36.57 2.73
126 127 1.644337 TGTCTGGGAGCCTCCTAACTA 59.356 52.381 11.29 0.00 36.57 2.24
127 128 0.413832 TGTCTGGGAGCCTCCTAACT 59.586 55.000 11.29 0.00 36.57 2.24
128 129 0.827368 CTGTCTGGGAGCCTCCTAAC 59.173 60.000 11.29 7.18 36.57 2.34
129 130 0.325671 CCTGTCTGGGAGCCTCCTAA 60.326 60.000 11.29 0.00 36.57 2.69
130 131 1.221909 TCCTGTCTGGGAGCCTCCTA 61.222 60.000 11.29 3.10 36.57 2.94
131 132 2.040278 CCTGTCTGGGAGCCTCCT 59.960 66.667 11.29 0.00 36.57 3.69
132 133 2.039624 TCCTGTCTGGGAGCCTCC 59.960 66.667 0.73 0.73 36.20 4.30
133 134 3.627690 CTCCTGTCTGGGAGCCTC 58.372 66.667 0.00 0.00 45.07 4.70
138 139 1.920325 CAAGGCCTCCTGTCTGGGA 60.920 63.158 5.23 0.00 32.13 4.37
139 140 2.673523 CAAGGCCTCCTGTCTGGG 59.326 66.667 5.23 0.00 32.13 4.45
140 141 2.045536 GCAAGGCCTCCTGTCTGG 60.046 66.667 5.23 0.00 32.13 3.86
141 142 2.045536 GGCAAGGCCTCCTGTCTG 60.046 66.667 5.23 0.00 46.69 3.51
151 152 1.017387 ATCGATCGAAAAGGCAAGGC 58.983 50.000 23.50 0.00 0.00 4.35
152 153 2.009774 ACATCGATCGAAAAGGCAAGG 58.990 47.619 23.50 0.09 0.00 3.61
153 154 3.419915 CAACATCGATCGAAAAGGCAAG 58.580 45.455 23.50 7.18 0.00 4.01
154 155 2.414029 GCAACATCGATCGAAAAGGCAA 60.414 45.455 23.50 0.00 0.00 4.52
155 156 1.130373 GCAACATCGATCGAAAAGGCA 59.870 47.619 23.50 0.00 0.00 4.75
156 157 1.398390 AGCAACATCGATCGAAAAGGC 59.602 47.619 23.50 21.66 0.00 4.35
157 158 3.747099 AAGCAACATCGATCGAAAAGG 57.253 42.857 23.50 14.05 0.00 3.11
158 159 4.911610 ACAAAAGCAACATCGATCGAAAAG 59.088 37.500 23.50 16.85 0.00 2.27
159 160 4.674662 CACAAAAGCAACATCGATCGAAAA 59.325 37.500 23.50 0.00 0.00 2.29
160 161 4.218265 CACAAAAGCAACATCGATCGAAA 58.782 39.130 23.50 0.00 0.00 3.46
161 162 3.809234 CACAAAAGCAACATCGATCGAA 58.191 40.909 23.50 5.77 0.00 3.71
162 163 2.412716 GCACAAAAGCAACATCGATCGA 60.413 45.455 21.86 21.86 0.00 3.59
163 164 1.906966 GCACAAAAGCAACATCGATCG 59.093 47.619 9.36 9.36 0.00 3.69
164 165 3.207474 AGCACAAAAGCAACATCGATC 57.793 42.857 0.00 0.00 36.85 3.69
165 166 3.426695 GCTAGCACAAAAGCAACATCGAT 60.427 43.478 10.63 0.00 38.63 3.59
166 167 2.095768 GCTAGCACAAAAGCAACATCGA 60.096 45.455 10.63 0.00 38.63 3.59
167 168 2.245096 GCTAGCACAAAAGCAACATCG 58.755 47.619 10.63 0.00 38.63 3.84
168 169 2.229784 AGGCTAGCACAAAAGCAACATC 59.770 45.455 18.24 0.00 40.61 3.06
169 170 2.242043 AGGCTAGCACAAAAGCAACAT 58.758 42.857 18.24 0.00 40.61 2.71
170 171 1.691196 AGGCTAGCACAAAAGCAACA 58.309 45.000 18.24 0.00 40.61 3.33
171 172 2.294512 AGAAGGCTAGCACAAAAGCAAC 59.705 45.455 18.24 0.00 40.61 4.17
172 173 2.586425 AGAAGGCTAGCACAAAAGCAA 58.414 42.857 18.24 0.00 40.61 3.91
173 174 2.276732 AGAAGGCTAGCACAAAAGCA 57.723 45.000 18.24 0.00 40.61 3.91
174 175 4.379918 CCTTAAGAAGGCTAGCACAAAAGC 60.380 45.833 18.24 0.00 42.78 3.51
175 176 5.302357 CCTTAAGAAGGCTAGCACAAAAG 57.698 43.478 18.24 11.15 42.78 2.27
188 189 7.497925 AGTTAGACAAGTTTGCCTTAAGAAG 57.502 36.000 3.36 0.00 0.00 2.85
189 190 7.875327 AAGTTAGACAAGTTTGCCTTAAGAA 57.125 32.000 3.36 0.00 0.00 2.52
190 191 8.999431 CATAAGTTAGACAAGTTTGCCTTAAGA 58.001 33.333 3.36 0.00 0.00 2.10
191 192 8.784043 ACATAAGTTAGACAAGTTTGCCTTAAG 58.216 33.333 0.00 0.00 0.00 1.85
192 193 8.685838 ACATAAGTTAGACAAGTTTGCCTTAA 57.314 30.769 0.00 0.00 0.00 1.85
193 194 8.154856 AGACATAAGTTAGACAAGTTTGCCTTA 58.845 33.333 0.00 0.00 0.00 2.69
194 195 6.998673 AGACATAAGTTAGACAAGTTTGCCTT 59.001 34.615 0.00 0.00 0.00 4.35
195 196 6.428159 CAGACATAAGTTAGACAAGTTTGCCT 59.572 38.462 0.00 0.00 0.00 4.75
196 197 6.204882 ACAGACATAAGTTAGACAAGTTTGCC 59.795 38.462 0.00 0.00 0.00 4.52
197 198 7.190920 ACAGACATAAGTTAGACAAGTTTGC 57.809 36.000 0.00 0.00 0.00 3.68
198 199 9.477484 AGTACAGACATAAGTTAGACAAGTTTG 57.523 33.333 0.00 0.00 0.00 2.93
199 200 9.694137 GAGTACAGACATAAGTTAGACAAGTTT 57.306 33.333 0.00 0.00 0.00 2.66
200 201 8.857098 TGAGTACAGACATAAGTTAGACAAGTT 58.143 33.333 0.00 0.00 0.00 2.66
201 202 8.405418 TGAGTACAGACATAAGTTAGACAAGT 57.595 34.615 0.00 0.00 0.00 3.16
202 203 8.731605 TCTGAGTACAGACATAAGTTAGACAAG 58.268 37.037 0.00 0.00 46.55 3.16
203 204 8.631480 TCTGAGTACAGACATAAGTTAGACAA 57.369 34.615 0.00 0.00 46.55 3.18
218 219 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
219 220 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
220 221 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
237 238 2.724977 TACACAAGAGTCAGCGGAAG 57.275 50.000 0.00 0.00 0.00 3.46
238 239 3.585862 GAATACACAAGAGTCAGCGGAA 58.414 45.455 0.00 0.00 0.00 4.30
239 240 2.415491 CGAATACACAAGAGTCAGCGGA 60.415 50.000 0.00 0.00 0.00 5.54
240 241 1.920574 CGAATACACAAGAGTCAGCGG 59.079 52.381 0.00 0.00 0.00 5.52
241 242 2.848887 CTCGAATACACAAGAGTCAGCG 59.151 50.000 0.00 0.00 0.00 5.18
242 243 2.600867 GCTCGAATACACAAGAGTCAGC 59.399 50.000 0.00 0.00 33.57 4.26
243 244 3.182967 GGCTCGAATACACAAGAGTCAG 58.817 50.000 0.00 0.00 35.60 3.51
244 245 2.094182 GGGCTCGAATACACAAGAGTCA 60.094 50.000 0.00 0.00 37.10 3.41
245 246 2.166664 AGGGCTCGAATACACAAGAGTC 59.833 50.000 0.00 0.00 34.85 3.36
246 247 2.166664 GAGGGCTCGAATACACAAGAGT 59.833 50.000 0.00 0.00 33.57 3.24
247 248 2.815478 GAGGGCTCGAATACACAAGAG 58.185 52.381 0.00 0.00 0.00 2.85
248 249 2.961526 GAGGGCTCGAATACACAAGA 57.038 50.000 0.00 0.00 0.00 3.02
272 273 4.729868 AGCTTTATATTACAAGCCAGGGG 58.270 43.478 9.30 0.00 45.63 4.79
273 274 5.594317 ACAAGCTTTATATTACAAGCCAGGG 59.406 40.000 0.00 0.00 45.63 4.45
274 275 6.699575 ACAAGCTTTATATTACAAGCCAGG 57.300 37.500 0.00 0.00 45.63 4.45
301 302 9.950680 CAACACAACTCTAGACACAAATAAAAT 57.049 29.630 0.00 0.00 0.00 1.82
302 303 8.952278 ACAACACAACTCTAGACACAAATAAAA 58.048 29.630 0.00 0.00 0.00 1.52
303 304 8.394877 CACAACACAACTCTAGACACAAATAAA 58.605 33.333 0.00 0.00 0.00 1.40
304 305 7.766738 TCACAACACAACTCTAGACACAAATAA 59.233 33.333 0.00 0.00 0.00 1.40
305 306 7.269316 TCACAACACAACTCTAGACACAAATA 58.731 34.615 0.00 0.00 0.00 1.40
306 307 6.112734 TCACAACACAACTCTAGACACAAAT 58.887 36.000 0.00 0.00 0.00 2.32
307 308 5.483811 TCACAACACAACTCTAGACACAAA 58.516 37.500 0.00 0.00 0.00 2.83
308 309 5.079689 TCACAACACAACTCTAGACACAA 57.920 39.130 0.00 0.00 0.00 3.33
309 310 4.729227 TCACAACACAACTCTAGACACA 57.271 40.909 0.00 0.00 0.00 3.72
310 311 7.316640 AGATATCACAACACAACTCTAGACAC 58.683 38.462 5.32 0.00 0.00 3.67
311 312 7.468141 AGATATCACAACACAACTCTAGACA 57.532 36.000 5.32 0.00 0.00 3.41
312 313 7.489757 GGAAGATATCACAACACAACTCTAGAC 59.510 40.741 5.32 0.00 0.00 2.59
313 314 7.363880 GGGAAGATATCACAACACAACTCTAGA 60.364 40.741 5.32 0.00 0.00 2.43
314 315 6.758886 GGGAAGATATCACAACACAACTCTAG 59.241 42.308 5.32 0.00 0.00 2.43
315 316 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
316 317 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
317 318 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
318 319 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
319 320 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
320 321 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
321 322 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
322 323 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
323 324 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
324 325 4.124851 ACTCACGGGAAGATATCACAAC 57.875 45.455 5.32 0.00 0.00 3.32
325 326 4.819105 AACTCACGGGAAGATATCACAA 57.181 40.909 5.32 0.00 0.00 3.33
326 327 4.466370 AGAAACTCACGGGAAGATATCACA 59.534 41.667 5.32 0.00 0.00 3.58
327 328 4.806247 CAGAAACTCACGGGAAGATATCAC 59.194 45.833 5.32 0.00 0.00 3.06
328 329 4.709886 TCAGAAACTCACGGGAAGATATCA 59.290 41.667 5.32 0.00 0.00 2.15
329 330 5.263968 TCAGAAACTCACGGGAAGATATC 57.736 43.478 0.00 0.00 0.00 1.63
330 331 5.600484 AGATCAGAAACTCACGGGAAGATAT 59.400 40.000 0.00 0.00 0.00 1.63
331 332 4.956700 AGATCAGAAACTCACGGGAAGATA 59.043 41.667 0.00 0.00 0.00 1.98
332 333 3.772025 AGATCAGAAACTCACGGGAAGAT 59.228 43.478 0.00 0.00 0.00 2.40
333 334 3.165875 AGATCAGAAACTCACGGGAAGA 58.834 45.455 0.00 0.00 0.00 2.87
334 335 3.601443 AGATCAGAAACTCACGGGAAG 57.399 47.619 0.00 0.00 0.00 3.46
335 336 3.323691 TCAAGATCAGAAACTCACGGGAA 59.676 43.478 0.00 0.00 0.00 3.97
336 337 2.897326 TCAAGATCAGAAACTCACGGGA 59.103 45.455 0.00 0.00 0.00 5.14
337 338 3.319137 TCAAGATCAGAAACTCACGGG 57.681 47.619 0.00 0.00 0.00 5.28
338 339 3.549471 CGATCAAGATCAGAAACTCACGG 59.451 47.826 10.39 0.00 37.69 4.94
339 340 4.169508 ACGATCAAGATCAGAAACTCACG 58.830 43.478 10.39 0.00 37.69 4.35
340 341 6.034044 GTGTACGATCAAGATCAGAAACTCAC 59.966 42.308 10.39 5.69 37.69 3.51
341 342 6.093404 GTGTACGATCAAGATCAGAAACTCA 58.907 40.000 10.39 0.00 37.69 3.41
342 343 6.093404 TGTGTACGATCAAGATCAGAAACTC 58.907 40.000 10.39 4.40 37.69 3.01
343 344 6.025749 TGTGTACGATCAAGATCAGAAACT 57.974 37.500 10.39 0.00 37.69 2.66
344 345 6.893958 ATGTGTACGATCAAGATCAGAAAC 57.106 37.500 10.39 3.47 37.69 2.78
345 346 7.905604 AAATGTGTACGATCAAGATCAGAAA 57.094 32.000 10.39 0.00 37.69 2.52
346 347 8.407457 GTAAATGTGTACGATCAAGATCAGAA 57.593 34.615 10.39 0.00 37.69 3.02
347 348 7.987268 GTAAATGTGTACGATCAAGATCAGA 57.013 36.000 10.39 0.00 37.69 3.27
363 364 8.257166 CGTACACTAATCATACACGTAAATGTG 58.743 37.037 8.63 0.75 45.41 3.21
364 365 8.183536 TCGTACACTAATCATACACGTAAATGT 58.816 33.333 8.63 0.00 36.56 2.71
365 366 8.551122 TCGTACACTAATCATACACGTAAATG 57.449 34.615 0.00 0.00 0.00 2.32
366 367 9.390795 GATCGTACACTAATCATACACGTAAAT 57.609 33.333 0.00 0.00 0.00 1.40
367 368 7.583762 CGATCGTACACTAATCATACACGTAAA 59.416 37.037 7.03 0.00 0.00 2.01
368 369 7.042791 TCGATCGTACACTAATCATACACGTAA 60.043 37.037 15.94 0.00 0.00 3.18
369 370 6.420604 TCGATCGTACACTAATCATACACGTA 59.579 38.462 15.94 0.00 0.00 3.57
370 371 5.234972 TCGATCGTACACTAATCATACACGT 59.765 40.000 15.94 0.00 0.00 4.49
371 372 5.673029 TCGATCGTACACTAATCATACACG 58.327 41.667 15.94 0.00 0.00 4.49
372 373 8.148022 GATTCGATCGTACACTAATCATACAC 57.852 38.462 15.94 0.00 0.00 2.90
389 390 2.355956 GACGCCCCCGATTCGATC 60.356 66.667 7.83 0.00 38.29 3.69
390 391 3.151710 TGACGCCCCCGATTCGAT 61.152 61.111 7.83 0.00 38.29 3.59
391 392 4.137872 GTGACGCCCCCGATTCGA 62.138 66.667 7.83 0.00 38.29 3.71
392 393 3.733344 ATGTGACGCCCCCGATTCG 62.733 63.158 0.00 0.00 38.29 3.34
393 394 2.180204 CATGTGACGCCCCCGATTC 61.180 63.158 0.00 0.00 38.29 2.52
394 395 1.618876 TACATGTGACGCCCCCGATT 61.619 55.000 9.11 0.00 38.29 3.34
395 396 1.618876 TTACATGTGACGCCCCCGAT 61.619 55.000 9.11 0.00 38.29 4.18
396 397 2.284276 TTACATGTGACGCCCCCGA 61.284 57.895 9.11 0.00 38.29 5.14
397 398 2.104253 GTTACATGTGACGCCCCCG 61.104 63.158 9.11 0.00 41.14 5.73
398 399 1.747745 GGTTACATGTGACGCCCCC 60.748 63.158 13.94 0.00 0.00 5.40
399 400 1.003112 TGGTTACATGTGACGCCCC 60.003 57.895 13.94 1.73 0.00 5.80
400 401 0.036765 TCTGGTTACATGTGACGCCC 60.037 55.000 13.94 2.08 0.00 6.13
401 402 1.803334 TTCTGGTTACATGTGACGCC 58.197 50.000 13.94 8.39 0.00 5.68
402 403 3.000041 TCATTCTGGTTACATGTGACGC 59.000 45.455 13.94 8.16 0.00 5.19
403 404 3.993736 TGTCATTCTGGTTACATGTGACG 59.006 43.478 13.94 2.41 36.10 4.35
404 405 5.643348 TCATGTCATTCTGGTTACATGTGAC 59.357 40.000 12.14 12.14 45.94 3.67
405 406 5.803552 TCATGTCATTCTGGTTACATGTGA 58.196 37.500 9.11 0.00 45.94 3.58
406 407 6.149973 ACTTCATGTCATTCTGGTTACATGTG 59.850 38.462 9.11 9.83 45.94 3.21
407 408 6.240894 ACTTCATGTCATTCTGGTTACATGT 58.759 36.000 2.69 2.69 45.94 3.21
408 409 6.748333 ACTTCATGTCATTCTGGTTACATG 57.252 37.500 7.76 7.76 46.75 3.21
409 410 6.716628 ACAACTTCATGTCATTCTGGTTACAT 59.283 34.615 0.00 0.00 32.91 2.29
443 444 1.288633 TGTCCATCCTTGATTGGCCAT 59.711 47.619 6.09 0.00 0.00 4.40
446 447 1.753073 CCTTGTCCATCCTTGATTGGC 59.247 52.381 0.00 0.00 0.00 4.52
470 471 5.163834 GGAAAGCACCGTCGTATTTTGATTA 60.164 40.000 0.00 0.00 0.00 1.75
483 484 1.029681 GTTCTTTGGGAAAGCACCGT 58.970 50.000 0.00 0.00 38.39 4.83
490 491 1.380524 TCGCAACGTTCTTTGGGAAA 58.619 45.000 0.00 0.00 43.30 3.13
492 493 4.859400 TCGCAACGTTCTTTGGGA 57.141 50.000 0.00 0.00 43.85 4.37
502 503 1.196127 CCATCATCCATCATCGCAACG 59.804 52.381 0.00 0.00 0.00 4.10
526 527 0.236449 GTGTTGGGGCTTAAACGTCG 59.764 55.000 0.00 0.00 0.00 5.12
597 598 9.787532 TTTCGAGCAATCCATAAATTCTTTAAG 57.212 29.630 0.00 0.00 0.00 1.85
606 607 5.713792 TTTGGTTTCGAGCAATCCATAAA 57.286 34.783 0.00 0.00 34.38 1.40
708 793 5.221461 CGGAGGGAGTATTAACTGCTAACAT 60.221 44.000 0.00 0.00 43.22 2.71
752 838 7.013083 CCAGAGAGGCGATTAGTAGTACTAAAA 59.987 40.741 23.19 7.33 43.16 1.52
788 874 7.035004 TGCAAAATATTTTTCAGGAGAATCGG 58.965 34.615 10.77 0.00 34.37 4.18
833 919 6.827641 TGATTTCGAGGTAATTTCGTTTGAG 58.172 36.000 0.00 0.00 39.05 3.02
835 921 6.031003 CGTTGATTTCGAGGTAATTTCGTTTG 59.969 38.462 0.00 0.00 39.05 2.93
888 974 4.704103 TCCGGCTCCAGCTCACCT 62.704 66.667 0.00 0.00 41.70 4.00
943 1029 2.526993 CGTTTGAACGTGGACGGCA 61.527 57.895 8.04 0.00 46.63 5.69
1170 1273 1.743321 CTCACCATCCTCCTCGCTCC 61.743 65.000 0.00 0.00 0.00 4.70
1171 1274 1.739049 CTCACCATCCTCCTCGCTC 59.261 63.158 0.00 0.00 0.00 5.03
1172 1275 1.760086 CCTCACCATCCTCCTCGCT 60.760 63.158 0.00 0.00 0.00 4.93
1173 1276 2.818132 CCTCACCATCCTCCTCGC 59.182 66.667 0.00 0.00 0.00 5.03
1174 1277 1.743321 GAGCCTCACCATCCTCCTCG 61.743 65.000 0.00 0.00 0.00 4.63
1175 1278 1.406860 GGAGCCTCACCATCCTCCTC 61.407 65.000 0.00 0.00 40.51 3.71
1176 1279 1.383803 GGAGCCTCACCATCCTCCT 60.384 63.158 0.00 0.00 40.51 3.69
1177 1280 2.447714 GGGAGCCTCACCATCCTCC 61.448 68.421 0.00 0.00 42.45 4.30
1178 1281 2.801631 CGGGAGCCTCACCATCCTC 61.802 68.421 0.00 0.00 33.40 3.71
1179 1282 2.238319 TACGGGAGCCTCACCATCCT 62.238 60.000 0.00 0.00 33.40 3.24
1180 1283 1.760875 TACGGGAGCCTCACCATCC 60.761 63.158 0.00 0.00 0.00 3.51
1181 1284 1.442148 GTACGGGAGCCTCACCATC 59.558 63.158 0.00 0.00 0.00 3.51
1182 1285 2.064581 GGTACGGGAGCCTCACCAT 61.065 63.158 0.00 0.00 0.00 3.55
1504 1608 1.077663 ACATGATCCAAGCCCACCTTT 59.922 47.619 0.00 0.00 0.00 3.11
1530 1634 4.051922 AGCAACTCAAGTCAACTAACTCG 58.948 43.478 0.00 0.00 0.00 4.18
1789 1895 1.484038 TGGCTCAAAACAAGCAACCT 58.516 45.000 0.00 0.00 41.66 3.50
1855 1961 7.939784 AATTATTTACTCTGTTCCTTGGGAC 57.060 36.000 0.00 0.00 0.00 4.46
1892 1998 6.536582 CACACATCTACCCAGACTAAAGATTG 59.463 42.308 0.00 0.00 32.25 2.67
1906 2012 6.349300 AGATATGGTTTCACACACATCTACC 58.651 40.000 0.00 0.00 0.00 3.18
1940 2046 6.183360 GCATATTGCCAGACTAAAGATTGGTT 60.183 38.462 6.45 0.00 37.42 3.67
1941 2047 5.300286 GCATATTGCCAGACTAAAGATTGGT 59.700 40.000 6.45 0.00 37.42 3.67
1947 2053 3.316308 GGGTGCATATTGCCAGACTAAAG 59.684 47.826 0.00 0.00 44.23 1.85
1948 2054 3.053693 AGGGTGCATATTGCCAGACTAAA 60.054 43.478 0.00 0.00 44.23 1.85
1951 2057 0.921896 AGGGTGCATATTGCCAGACT 59.078 50.000 0.00 0.00 44.23 3.24
1952 2058 1.133976 AGAGGGTGCATATTGCCAGAC 60.134 52.381 0.00 0.00 44.23 3.51
1954 2060 1.315690 CAGAGGGTGCATATTGCCAG 58.684 55.000 0.00 0.00 44.23 4.85
1956 2062 0.183492 TCCAGAGGGTGCATATTGCC 59.817 55.000 0.00 0.00 44.23 4.52
1957 2063 2.057137 TTCCAGAGGGTGCATATTGC 57.943 50.000 0.00 0.00 45.29 3.56
1958 2064 3.567164 GTCATTCCAGAGGGTGCATATTG 59.433 47.826 0.00 0.00 34.93 1.90
1959 2065 3.202818 TGTCATTCCAGAGGGTGCATATT 59.797 43.478 0.00 0.00 34.93 1.28
2070 2210 3.217599 GAGTGACGCTCAACTACATCA 57.782 47.619 11.19 0.00 43.58 3.07
2161 2301 2.024414 GCATTCACCCTGGGATAACAC 58.976 52.381 22.23 5.12 0.00 3.32
2174 2314 6.019156 GCACTGAATTAGAGACTAGCATTCAC 60.019 42.308 0.00 0.00 31.94 3.18
2514 2654 3.444029 ACCCATGCCAAAAAGAATAGCT 58.556 40.909 0.00 0.00 0.00 3.32
2547 2687 6.798315 ATCAAAATAGGAATGATCGCAGAG 57.202 37.500 0.00 0.00 43.63 3.35
2612 2752 5.695851 AGTCCAGCATGTAACAGAAAAAG 57.304 39.130 0.00 0.00 0.00 2.27
2783 2923 2.672961 TCCTGCCTCATCGTTAAGTG 57.327 50.000 0.00 0.00 0.00 3.16
3114 3255 4.024048 ACCTTAGTTCAAAACTGCGACATG 60.024 41.667 2.65 0.00 42.84 3.21
3115 3256 4.134563 ACCTTAGTTCAAAACTGCGACAT 58.865 39.130 2.65 0.00 42.84 3.06
3150 3291 8.062065 TCCAAAATAAGTGTCAACTTTGAACT 57.938 30.769 0.00 0.00 44.47 3.01
3276 3425 5.459107 GTGTGCCTCGTCTAAATATGTGTAG 59.541 44.000 0.00 0.00 0.00 2.74
3369 3518 4.906065 AAATGTTCCCATCATGATGTCG 57.094 40.909 29.23 20.28 37.11 4.35
4183 4340 6.526325 TGAAAATATCGCAACAAAGCATGTAC 59.474 34.615 0.00 0.00 42.99 2.90
4503 4660 1.587946 GTGCACAAAAGAGCAAAACCG 59.412 47.619 13.17 0.00 43.20 4.44
4697 4854 8.202461 TGAAAGGAAGTCAGTAATAAGAAGGA 57.798 34.615 0.00 0.00 0.00 3.36
4734 4891 1.434622 GGACATGGTCGATGCAGCTG 61.435 60.000 10.11 10.11 35.15 4.24
4892 5056 0.035056 GGGTGCTTAGCCACTCATGT 60.035 55.000 0.29 0.00 36.22 3.21
4894 5058 0.995024 AAGGGTGCTTAGCCACTCAT 59.005 50.000 0.29 0.00 38.69 2.90
4897 5061 1.834263 CTAGAAGGGTGCTTAGCCACT 59.166 52.381 0.29 0.00 36.03 4.00
4902 5066 4.404073 ACTGATCACTAGAAGGGTGCTTAG 59.596 45.833 0.00 0.00 34.97 2.18
4906 5070 2.234908 ACACTGATCACTAGAAGGGTGC 59.765 50.000 0.00 0.00 34.97 5.01
5019 5183 6.253946 AGGAGAGGTCTCAAAAGAAAAGAA 57.746 37.500 9.20 0.00 44.60 2.52
5021 5185 6.543831 TCAAAGGAGAGGTCTCAAAAGAAAAG 59.456 38.462 9.20 0.00 44.60 2.27
5250 5415 0.987081 ACCTGCCTCCTGATGATGCT 60.987 55.000 0.00 0.00 35.80 3.79
5251 5416 0.761187 TACCTGCCTCCTGATGATGC 59.239 55.000 0.00 0.00 35.40 3.91
5369 5539 3.191162 TGCTAGCAGCCAAAACATAACAG 59.809 43.478 14.93 0.00 41.51 3.16
5415 5585 3.242867 CTCACCCCCTCAGCAATATCTA 58.757 50.000 0.00 0.00 0.00 1.98
5431 5601 2.815647 GCACGCTACAGCCTCACC 60.816 66.667 0.00 0.00 37.91 4.02
5445 5616 1.153086 CCAGCCCCTAGACATGCAC 60.153 63.158 0.00 0.00 0.00 4.57
5496 5667 2.456989 GCATTTGAATCATGACAGGCG 58.543 47.619 0.00 0.00 0.00 5.52
5537 5711 1.028868 GGCAATCAGACCACAGGAGC 61.029 60.000 0.00 0.00 0.00 4.70
5538 5712 0.617413 AGGCAATCAGACCACAGGAG 59.383 55.000 0.00 0.00 0.00 3.69
5539 5713 1.067295 AAGGCAATCAGACCACAGGA 58.933 50.000 0.00 0.00 0.00 3.86
5580 5754 6.717997 TGTTTGACCAGACATGTAGAGTACTA 59.282 38.462 0.00 0.00 0.00 1.82
5581 5755 5.538813 TGTTTGACCAGACATGTAGAGTACT 59.461 40.000 0.00 0.00 0.00 2.73
5582 5756 5.779922 TGTTTGACCAGACATGTAGAGTAC 58.220 41.667 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.