Multiple sequence alignment - TraesCS3A01G442200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G442200 chr3A 100.000 4776 0 0 1 4776 684293940 684289165 0.000000e+00 8820
1 TraesCS3A01G442200 chr3B 93.404 2365 82 26 1 2331 724930073 724927749 0.000000e+00 3435
2 TraesCS3A01G442200 chr3B 89.163 2270 121 61 2441 4665 724927752 724925563 0.000000e+00 2713
3 TraesCS3A01G442200 chr3D 94.307 1985 77 15 746 2709 547431653 547429684 0.000000e+00 3007
4 TraesCS3A01G442200 chr3D 88.315 1917 96 51 2777 4636 547429590 547427745 0.000000e+00 2182
5 TraesCS3A01G442200 chr3D 91.689 758 33 11 1 749 547432415 547431679 0.000000e+00 1024
6 TraesCS3A01G442200 chr3D 98.485 66 0 1 4637 4702 547427711 547427647 1.090000e-21 115
7 TraesCS3A01G442200 chr7B 91.429 105 9 0 1560 1664 721807278 721807382 1.390000e-30 145
8 TraesCS3A01G442200 chr5D 92.593 81 4 1 4698 4776 383711922 383712002 1.090000e-21 115
9 TraesCS3A01G442200 chr5D 98.361 61 1 0 4716 4776 288928468 288928408 1.820000e-19 108
10 TraesCS3A01G442200 chr5D 96.721 61 1 1 4716 4776 169015921 169015862 3.040000e-17 100
11 TraesCS3A01G442200 chr5A 98.361 61 1 0 4716 4776 595927857 595927917 1.820000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G442200 chr3A 684289165 684293940 4775 True 8820 8820 100.0000 1 4776 1 chr3A.!!$R1 4775
1 TraesCS3A01G442200 chr3B 724925563 724930073 4510 True 3074 3435 91.2835 1 4665 2 chr3B.!!$R1 4664
2 TraesCS3A01G442200 chr3D 547427647 547432415 4768 True 1582 3007 93.1990 1 4702 4 chr3D.!!$R1 4701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 705 0.179111 CGAAGTATGCCTCCTCGCAA 60.179 55.0 0.00 0.0 43.24 4.85 F
1671 1720 0.322816 TCAGCAAGGTGAGGAATGCC 60.323 55.0 0.00 0.0 39.59 4.40 F
2085 2136 0.179163 GGAGCGCGGGAATTTTCTTG 60.179 55.0 8.83 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2090 0.179189 GCCAAGAGATTTTGCGGACG 60.179 55.0 0.00 0.00 0.00 4.79 R
3542 3666 0.614415 ACAGTGGAGCAGAGGAGAGG 60.614 60.0 0.00 0.00 0.00 3.69 R
3858 3991 0.037512 CTAGCATCATCCTGGCGAGG 60.038 60.0 8.78 8.78 41.39 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 180 2.482142 CGTCCTTCCATCTTAGCTCACC 60.482 54.545 0.00 0.00 0.00 4.02
285 288 6.453134 CGTTGCGTAAAAACAAAACTCATGTT 60.453 34.615 0.00 0.00 42.56 2.71
364 367 5.192522 ACTCCATCTCCATGTAAGAAACCAT 59.807 40.000 0.00 0.00 0.00 3.55
371 374 1.164411 TGTAAGAAACCATGGCGCAG 58.836 50.000 13.04 0.00 0.00 5.18
415 418 2.165301 GTGTCCGCCGAATCTTCCG 61.165 63.158 0.00 0.00 0.00 4.30
418 421 2.122797 TCCGCCGAATCTTCCGCTA 61.123 57.895 0.00 0.00 30.78 4.26
436 439 6.578944 TCCGCTACTTTTACATGTCACATAT 58.421 36.000 0.00 0.00 0.00 1.78
454 458 4.466370 ACATATATACGTGTGCCTAGCCAT 59.534 41.667 0.00 0.00 0.00 4.40
455 459 3.594603 ATATACGTGTGCCTAGCCATC 57.405 47.619 0.00 0.00 0.00 3.51
467 471 3.815401 GCCTAGCCATCGACAAACATATT 59.185 43.478 0.00 0.00 0.00 1.28
469 473 5.300752 CCTAGCCATCGACAAACATATTCT 58.699 41.667 0.00 0.00 0.00 2.40
482 486 5.387113 AACATATTCTTGGCTATGGTCCA 57.613 39.130 0.00 0.00 31.07 4.02
484 488 6.702449 ACATATTCTTGGCTATGGTCCATA 57.298 37.500 11.22 11.22 32.92 2.74
527 533 4.215613 ACCATACTTCTCCGCAAGAAAAAC 59.784 41.667 0.73 0.00 43.39 2.43
570 583 9.802039 ACTAAAAATAAATCACACCTCAGGTTA 57.198 29.630 0.00 0.00 31.02 2.85
672 685 5.221224 ACAATGAGGAATTTTGCGAGTTTCA 60.221 36.000 0.00 0.00 0.00 2.69
673 686 4.223320 TGAGGAATTTTGCGAGTTTCAC 57.777 40.909 0.00 0.00 0.00 3.18
674 687 3.226347 GAGGAATTTTGCGAGTTTCACG 58.774 45.455 0.00 0.00 0.00 4.35
675 688 2.875933 AGGAATTTTGCGAGTTTCACGA 59.124 40.909 0.00 0.00 0.00 4.35
677 690 3.664025 GGAATTTTGCGAGTTTCACGAAG 59.336 43.478 0.00 0.00 0.00 3.79
679 692 5.412526 AATTTTGCGAGTTTCACGAAGTA 57.587 34.783 0.00 0.00 41.61 2.24
680 693 5.607119 ATTTTGCGAGTTTCACGAAGTAT 57.393 34.783 0.00 0.00 41.61 2.12
681 694 4.383774 TTTGCGAGTTTCACGAAGTATG 57.616 40.909 0.00 0.00 41.61 2.39
682 695 1.724623 TGCGAGTTTCACGAAGTATGC 59.275 47.619 0.00 0.00 41.61 3.14
683 696 1.060698 GCGAGTTTCACGAAGTATGCC 59.939 52.381 0.00 0.00 41.61 4.40
687 700 2.567615 AGTTTCACGAAGTATGCCTCCT 59.432 45.455 0.00 0.00 41.61 3.69
689 702 0.738975 TCACGAAGTATGCCTCCTCG 59.261 55.000 0.00 0.00 41.61 4.63
690 703 0.872021 CACGAAGTATGCCTCCTCGC 60.872 60.000 0.00 0.00 41.61 5.03
691 704 1.320344 ACGAAGTATGCCTCCTCGCA 61.320 55.000 0.00 0.00 41.94 5.10
692 705 0.179111 CGAAGTATGCCTCCTCGCAA 60.179 55.000 0.00 0.00 43.24 4.85
693 706 1.739035 CGAAGTATGCCTCCTCGCAAA 60.739 52.381 0.00 0.00 43.24 3.68
694 707 2.356135 GAAGTATGCCTCCTCGCAAAA 58.644 47.619 0.00 0.00 43.24 2.44
695 708 2.717639 AGTATGCCTCCTCGCAAAAT 57.282 45.000 0.00 0.00 43.24 1.82
696 709 3.004752 AGTATGCCTCCTCGCAAAATT 57.995 42.857 0.00 0.00 43.24 1.82
697 710 3.356290 AGTATGCCTCCTCGCAAAATTT 58.644 40.909 0.00 0.00 43.24 1.82
698 711 2.947448 ATGCCTCCTCGCAAAATTTC 57.053 45.000 0.00 0.00 43.24 2.17
699 712 0.887933 TGCCTCCTCGCAAAATTTCC 59.112 50.000 0.00 0.00 35.32 3.13
700 713 1.177401 GCCTCCTCGCAAAATTTCCT 58.823 50.000 0.00 0.00 0.00 3.36
756 798 2.161609 GGAGGCATACTTGTTTTCACCG 59.838 50.000 0.00 0.00 0.00 4.94
757 799 2.159382 AGGCATACTTGTTTTCACCGG 58.841 47.619 0.00 0.00 0.00 5.28
829 871 1.643880 GGCCATGATTTCCAAAAGCG 58.356 50.000 0.00 0.00 0.00 4.68
832 874 2.094545 GCCATGATTTCCAAAAGCGTCT 60.095 45.455 0.00 0.00 0.00 4.18
902 944 4.262678 GCCTATAAGAAGGGAAGGTAGCAG 60.263 50.000 0.00 0.00 37.11 4.24
949 992 4.623932 TGGAGTTGCAGAGATAAGTTGT 57.376 40.909 0.00 0.00 0.00 3.32
1053 1096 2.680352 GAGGACGAGCTGGTGGGA 60.680 66.667 5.94 0.00 0.00 4.37
1056 1099 4.459089 GACGAGCTGGTGGGAGGC 62.459 72.222 5.94 0.00 0.00 4.70
1281 1324 2.508663 GCCTACCACGACTTCGGC 60.509 66.667 3.30 0.00 44.95 5.54
1330 1373 2.391389 CCGCCGTTCCTTCTTGAGC 61.391 63.158 0.00 0.00 0.00 4.26
1671 1720 0.322816 TCAGCAAGGTGAGGAATGCC 60.323 55.000 0.00 0.00 39.59 4.40
1682 1731 4.875713 GAATGCCCCCGCCGTCAT 62.876 66.667 0.00 0.00 0.00 3.06
1803 1852 3.742369 CACTTGATGGTGAATTTTGGTGC 59.258 43.478 0.00 0.00 39.34 5.01
1985 2036 1.852280 GCGCGGGAAATTTTCTTATGC 59.148 47.619 8.83 7.09 0.00 3.14
2039 2090 5.305585 TGGGAGCGATAAAACTATTCCATC 58.694 41.667 0.00 0.00 0.00 3.51
2085 2136 0.179163 GGAGCGCGGGAATTTTCTTG 60.179 55.000 8.83 0.00 0.00 3.02
2091 2142 2.724174 CGCGGGAATTTTCTTGTTGAAC 59.276 45.455 0.00 0.00 33.88 3.18
2127 2178 2.108168 GGGGAGCAATAAAACCCTTCC 58.892 52.381 0.00 0.00 41.79 3.46
2131 2182 4.959839 GGGAGCAATAAAACCCTTCCATTA 59.040 41.667 0.00 0.00 39.28 1.90
2231 2282 2.512896 AGCACCATGAATCCCTTCTCAT 59.487 45.455 0.00 0.00 32.40 2.90
2238 2289 6.069440 ACCATGAATCCCTTCTCATCTTGTTA 60.069 38.462 0.00 0.00 29.69 2.41
2268 2319 4.246458 GTCTTACTGTTCTGCCTTGGTAG 58.754 47.826 0.00 0.00 0.00 3.18
2306 2357 2.572290 ACTACCAGCCAAGTGTGTTTC 58.428 47.619 0.00 0.00 0.00 2.78
2374 2425 4.274012 TGCCATGCACAAGGTGTT 57.726 50.000 0.00 0.00 35.75 3.32
2378 2429 2.094675 GCCATGCACAAGGTGTTATCT 58.905 47.619 0.00 0.00 35.75 1.98
2390 2441 2.683362 GGTGTTATCTAAAGCCACCTGC 59.317 50.000 0.00 0.00 41.83 4.85
2403 2454 0.394352 CACCTGCCACTGGATAACCC 60.394 60.000 0.00 0.00 34.81 4.11
2418 2469 4.283467 GGATAACCCACAAAGCTCCTTTTT 59.717 41.667 0.00 0.00 30.72 1.94
2528 2581 2.979813 GCGTGTAAAGTGCATTTTCCTG 59.020 45.455 10.79 1.72 32.01 3.86
2537 2590 3.096489 TGCATTTTCCTGCAGTTGTTC 57.904 42.857 13.81 0.00 46.76 3.18
2548 2601 4.142534 CCTGCAGTTGTTCCATGTAATCAG 60.143 45.833 13.81 0.00 0.00 2.90
2552 2605 5.123820 GCAGTTGTTCCATGTAATCAGCTTA 59.876 40.000 0.00 0.00 0.00 3.09
2562 2615 7.064609 TCCATGTAATCAGCTTACTTTTCTTCG 59.935 37.037 0.00 0.00 40.40 3.79
2692 2763 9.926751 CAGAACATGATTATGTCAAGATGTTAC 57.073 33.333 3.26 0.00 46.54 2.50
2745 2817 5.186198 GGTTGTATGCTACATCCTCTGTTT 58.814 41.667 12.49 0.00 42.55 2.83
2753 2825 8.894768 ATGCTACATCCTCTGTTTCTAAATAC 57.105 34.615 0.00 0.00 39.39 1.89
2768 2840 9.672086 GTTTCTAAATACAACAGTGTTTGCATA 57.328 29.630 5.57 0.00 39.30 3.14
2814 2927 1.863454 GTAGTTGATCGGCAGCTCATG 59.137 52.381 0.00 0.00 39.02 3.07
2822 2935 1.364626 CGGCAGCTCATGACCACTTC 61.365 60.000 0.00 0.00 30.50 3.01
3226 3339 3.616721 AGCAGGCGACGGTCAGTT 61.617 61.111 9.10 0.00 0.00 3.16
3280 3401 4.022068 TGCTCCTTTTCCATTGTGTCATTC 60.022 41.667 0.00 0.00 0.00 2.67
3281 3402 4.022068 GCTCCTTTTCCATTGTGTCATTCA 60.022 41.667 0.00 0.00 0.00 2.57
3282 3403 5.337009 GCTCCTTTTCCATTGTGTCATTCAT 60.337 40.000 0.00 0.00 0.00 2.57
3283 3404 6.669125 TCCTTTTCCATTGTGTCATTCATT 57.331 33.333 0.00 0.00 0.00 2.57
3335 3456 3.842820 TGTTTGATTGGTTGTGTGTGTG 58.157 40.909 0.00 0.00 0.00 3.82
3363 3487 1.909302 GTTGAGGTGAGGATGAGGGAA 59.091 52.381 0.00 0.00 0.00 3.97
3615 3743 1.667724 GACAGTGCCCATTTCGATCAG 59.332 52.381 0.00 0.00 0.00 2.90
3618 3746 2.289820 CAGTGCCCATTTCGATCAGATG 59.710 50.000 0.00 0.00 0.00 2.90
3622 3750 3.378112 TGCCCATTTCGATCAGATGAAAC 59.622 43.478 9.06 1.30 36.96 2.78
3624 3752 4.202441 CCCATTTCGATCAGATGAAACCT 58.798 43.478 9.06 0.00 36.96 3.50
3647 3780 0.592247 CGTTGCTTGCTGTTCACCAC 60.592 55.000 0.00 0.00 0.00 4.16
3653 3786 2.558359 GCTTGCTGTTCACCACCTTTAT 59.442 45.455 0.00 0.00 0.00 1.40
3654 3787 3.612479 GCTTGCTGTTCACCACCTTTATG 60.612 47.826 0.00 0.00 0.00 1.90
3655 3788 2.513753 TGCTGTTCACCACCTTTATGG 58.486 47.619 0.00 0.00 46.10 2.74
3668 3801 4.078639 CCTTTATGGTCTGGTCTGATCC 57.921 50.000 0.00 0.00 0.00 3.36
3703 3836 3.595819 GTCCAGCAATGCAGGGAC 58.404 61.111 25.53 25.53 43.77 4.46
3803 3936 2.995574 CCCGGGAGACAAGACCGT 60.996 66.667 18.48 0.00 45.85 4.83
3822 3955 2.477825 GTCAGGACGGTGATGATGATG 58.522 52.381 0.00 0.00 0.00 3.07
3825 3958 3.006217 TCAGGACGGTGATGATGATGATC 59.994 47.826 0.00 0.00 0.00 2.92
3827 3960 2.288457 GGACGGTGATGATGATGATCGT 60.288 50.000 0.00 0.00 0.00 3.73
3828 3961 2.728318 GACGGTGATGATGATGATCGTG 59.272 50.000 0.00 0.00 0.00 4.35
3829 3962 2.064014 CGGTGATGATGATGATCGTGG 58.936 52.381 0.00 0.00 0.00 4.94
3830 3963 1.802960 GGTGATGATGATGATCGTGGC 59.197 52.381 0.00 0.00 0.00 5.01
3831 3964 1.802960 GTGATGATGATGATCGTGGCC 59.197 52.381 0.00 0.00 0.00 5.36
3832 3965 1.073964 GATGATGATGATCGTGGCCG 58.926 55.000 0.00 0.00 0.00 6.13
3833 3966 0.394192 ATGATGATGATCGTGGCCGT 59.606 50.000 0.00 0.00 35.01 5.68
3834 3967 0.177836 TGATGATGATCGTGGCCGTT 59.822 50.000 0.00 0.00 35.01 4.44
3835 3968 0.583438 GATGATGATCGTGGCCGTTG 59.417 55.000 0.00 0.00 35.01 4.10
3836 3969 0.815213 ATGATGATCGTGGCCGTTGG 60.815 55.000 0.00 0.00 35.01 3.77
3837 3970 1.153449 GATGATCGTGGCCGTTGGA 60.153 57.895 0.00 0.00 35.01 3.53
3838 3971 0.532862 GATGATCGTGGCCGTTGGAT 60.533 55.000 0.00 0.00 35.01 3.41
3840 3973 2.124736 ATCGTGGCCGTTGGATGG 60.125 61.111 0.00 0.00 35.01 3.51
3846 3979 0.616395 TGGCCGTTGGATGGTCTCTA 60.616 55.000 0.00 0.00 28.03 2.43
3853 3986 3.254657 CGTTGGATGGTCTCTATCTCCTC 59.745 52.174 0.00 0.00 0.00 3.71
3854 3987 4.479158 GTTGGATGGTCTCTATCTCCTCT 58.521 47.826 0.00 0.00 0.00 3.69
3858 3991 3.222173 TGGTCTCTATCTCCTCTCTGC 57.778 52.381 0.00 0.00 0.00 4.26
3861 3994 3.412386 GTCTCTATCTCCTCTCTGCCTC 58.588 54.545 0.00 0.00 0.00 4.70
3863 3996 0.881118 CTATCTCCTCTCTGCCTCGC 59.119 60.000 0.00 0.00 0.00 5.03
3902 4036 2.877043 CAAAACTTTGTGCTGCTCCT 57.123 45.000 0.00 0.00 33.59 3.69
3904 4038 2.861935 CAAAACTTTGTGCTGCTCCTTG 59.138 45.455 0.00 0.00 33.59 3.61
3993 4129 0.238817 CGGGATCTCGGTCGATCTTC 59.761 60.000 7.23 0.00 39.73 2.87
3995 4131 1.538075 GGGATCTCGGTCGATCTTCTC 59.462 57.143 0.00 0.00 39.73 2.87
3996 4132 1.538075 GGATCTCGGTCGATCTTCTCC 59.462 57.143 0.00 0.00 39.73 3.71
4078 4216 1.078528 TCAGTCGGTCCTCCATGGT 59.921 57.895 12.58 0.00 37.07 3.55
4079 4217 1.219124 CAGTCGGTCCTCCATGGTG 59.781 63.158 12.58 9.53 37.07 4.17
4080 4218 1.229209 AGTCGGTCCTCCATGGTGT 60.229 57.895 12.58 0.00 37.07 4.16
4103 4241 2.028420 TGGTGAAATGAGATGAGGCG 57.972 50.000 0.00 0.00 0.00 5.52
4104 4242 1.554617 TGGTGAAATGAGATGAGGCGA 59.445 47.619 0.00 0.00 0.00 5.54
4112 4250 6.426025 TGAAATGAGATGAGGCGAAATATGAG 59.574 38.462 0.00 0.00 0.00 2.90
4113 4251 4.263018 TGAGATGAGGCGAAATATGAGG 57.737 45.455 0.00 0.00 0.00 3.86
4118 4256 0.601311 AGGCGAAATATGAGGCGAGC 60.601 55.000 0.00 0.00 35.47 5.03
4122 4282 0.233332 GAAATATGAGGCGAGCGCAC 59.767 55.000 17.16 0.96 44.11 5.34
4161 4321 3.879682 CATGGTCGTGCCCGCATG 61.880 66.667 2.35 2.35 36.04 4.06
4173 4333 0.804989 CCCGCATGTTTCCAAGAGAC 59.195 55.000 0.00 0.00 0.00 3.36
4207 4368 2.479837 GGACAATGATTGCATGCATGG 58.520 47.619 27.34 6.53 34.26 3.66
4208 4369 2.159014 GGACAATGATTGCATGCATGGT 60.159 45.455 27.34 10.28 34.26 3.55
4315 4486 5.193099 ACTATGGCCTCTTGTGGTTTATT 57.807 39.130 3.32 0.00 0.00 1.40
4316 4487 6.321821 ACTATGGCCTCTTGTGGTTTATTA 57.678 37.500 3.32 0.00 0.00 0.98
4317 4488 6.911308 ACTATGGCCTCTTGTGGTTTATTAT 58.089 36.000 3.32 0.00 0.00 1.28
4323 4494 6.040391 GGCCTCTTGTGGTTTATTATGCAATA 59.960 38.462 0.00 0.00 0.00 1.90
4325 4496 7.132213 CCTCTTGTGGTTTATTATGCAATACG 58.868 38.462 0.00 0.00 0.00 3.06
4328 4499 8.394877 TCTTGTGGTTTATTATGCAATACGAAG 58.605 33.333 0.00 0.00 0.00 3.79
4371 4542 4.208632 CCGGCTGAACTGGTCATC 57.791 61.111 0.00 0.00 40.35 2.92
4391 4562 4.540153 ACATAGCCCATGTGCGAC 57.460 55.556 0.92 0.00 46.41 5.19
4488 4671 0.306228 TTATGCGTGTGTGTGTGTGC 59.694 50.000 0.00 0.00 0.00 4.57
4562 4755 1.889170 TCTGCCGTCTCTATATGCCAG 59.111 52.381 0.00 0.00 0.00 4.85
4563 4756 1.615883 CTGCCGTCTCTATATGCCAGT 59.384 52.381 0.00 0.00 0.00 4.00
4564 4757 1.341209 TGCCGTCTCTATATGCCAGTG 59.659 52.381 0.00 0.00 0.00 3.66
4565 4758 1.937108 GCCGTCTCTATATGCCAGTGC 60.937 57.143 0.00 0.00 38.26 4.40
4566 4759 1.337260 CCGTCTCTATATGCCAGTGCC 60.337 57.143 0.00 0.00 36.33 5.01
4567 4760 1.341209 CGTCTCTATATGCCAGTGCCA 59.659 52.381 0.00 0.00 36.33 4.92
4628 4821 1.604604 GTGGCTTGGCTTCACAGTAA 58.395 50.000 0.00 0.00 0.00 2.24
4629 4822 1.537202 GTGGCTTGGCTTCACAGTAAG 59.463 52.381 0.00 0.00 0.00 2.34
4634 4859 3.058639 GCTTGGCTTCACAGTAAGTTGAG 60.059 47.826 0.00 0.00 0.00 3.02
4635 4860 3.838244 TGGCTTCACAGTAAGTTGAGT 57.162 42.857 0.00 0.00 0.00 3.41
4698 4923 7.725844 AGGAGACTGGACATGAGTTTTAAAAAT 59.274 33.333 1.31 0.42 41.13 1.82
4699 4924 9.010029 GGAGACTGGACATGAGTTTTAAAAATA 57.990 33.333 1.31 0.00 0.00 1.40
4732 4957 2.171568 ACTGGTAGTTACCCCCTAGC 57.828 55.000 5.90 0.00 45.87 3.42
4733 4958 1.650166 ACTGGTAGTTACCCCCTAGCT 59.350 52.381 5.90 0.00 45.87 3.32
4734 4959 2.861317 ACTGGTAGTTACCCCCTAGCTA 59.139 50.000 5.90 0.00 45.87 3.32
4735 4960 3.470154 ACTGGTAGTTACCCCCTAGCTAT 59.530 47.826 5.90 0.00 45.87 2.97
4736 4961 4.078160 ACTGGTAGTTACCCCCTAGCTATT 60.078 45.833 5.90 0.00 45.87 1.73
4737 4962 4.899486 TGGTAGTTACCCCCTAGCTATTT 58.101 43.478 5.90 0.00 45.87 1.40
4738 4963 4.657039 TGGTAGTTACCCCCTAGCTATTTG 59.343 45.833 5.90 0.00 45.87 2.32
4739 4964 3.859061 AGTTACCCCCTAGCTATTTGC 57.141 47.619 0.00 0.00 43.29 3.68
4740 4965 2.442126 AGTTACCCCCTAGCTATTTGCC 59.558 50.000 0.00 0.00 44.23 4.52
4741 4966 1.441695 TACCCCCTAGCTATTTGCCC 58.558 55.000 0.00 0.00 44.23 5.36
4742 4967 0.328548 ACCCCCTAGCTATTTGCCCT 60.329 55.000 0.00 0.00 44.23 5.19
4743 4968 0.402121 CCCCCTAGCTATTTGCCCTC 59.598 60.000 0.00 0.00 44.23 4.30
4744 4969 0.402121 CCCCTAGCTATTTGCCCTCC 59.598 60.000 0.00 0.00 44.23 4.30
4745 4970 1.140312 CCCTAGCTATTTGCCCTCCA 58.860 55.000 0.00 0.00 44.23 3.86
4746 4971 1.202818 CCCTAGCTATTTGCCCTCCAC 60.203 57.143 0.00 0.00 44.23 4.02
4747 4972 1.541233 CCTAGCTATTTGCCCTCCACG 60.541 57.143 0.00 0.00 44.23 4.94
4748 4973 1.139058 CTAGCTATTTGCCCTCCACGT 59.861 52.381 0.00 0.00 44.23 4.49
4749 4974 0.392998 AGCTATTTGCCCTCCACGTG 60.393 55.000 9.08 9.08 44.23 4.49
4750 4975 0.676782 GCTATTTGCCCTCCACGTGT 60.677 55.000 15.65 0.00 35.15 4.49
4751 4976 1.369625 CTATTTGCCCTCCACGTGTC 58.630 55.000 15.65 0.00 0.00 3.67
4752 4977 0.035820 TATTTGCCCTCCACGTGTCC 60.036 55.000 15.65 0.00 0.00 4.02
4753 4978 1.779061 ATTTGCCCTCCACGTGTCCT 61.779 55.000 15.65 0.00 0.00 3.85
4754 4979 2.391724 TTTGCCCTCCACGTGTCCTC 62.392 60.000 15.65 0.09 0.00 3.71
4755 4980 4.083862 GCCCTCCACGTGTCCTCC 62.084 72.222 15.65 0.00 0.00 4.30
4756 4981 2.603473 CCCTCCACGTGTCCTCCA 60.603 66.667 15.65 0.00 0.00 3.86
4757 4982 2.657237 CCTCCACGTGTCCTCCAC 59.343 66.667 15.65 0.00 40.89 4.02
4758 4983 1.908793 CCTCCACGTGTCCTCCACT 60.909 63.158 15.65 0.00 42.20 4.00
4759 4984 1.290324 CTCCACGTGTCCTCCACTG 59.710 63.158 15.65 0.00 42.20 3.66
4760 4985 1.456892 TCCACGTGTCCTCCACTGT 60.457 57.895 15.65 0.00 42.20 3.55
4761 4986 0.178984 TCCACGTGTCCTCCACTGTA 60.179 55.000 15.65 0.00 42.20 2.74
4762 4987 0.038526 CCACGTGTCCTCCACTGTAC 60.039 60.000 15.65 0.00 42.20 2.90
4763 4988 0.038526 CACGTGTCCTCCACTGTACC 60.039 60.000 7.58 0.00 42.20 3.34
4764 4989 0.468585 ACGTGTCCTCCACTGTACCA 60.469 55.000 0.00 0.00 42.20 3.25
4765 4990 0.895530 CGTGTCCTCCACTGTACCAT 59.104 55.000 0.00 0.00 42.20 3.55
4766 4991 1.135083 CGTGTCCTCCACTGTACCATC 60.135 57.143 0.00 0.00 42.20 3.51
4767 4992 1.899814 GTGTCCTCCACTGTACCATCA 59.100 52.381 0.00 0.00 41.11 3.07
4768 4993 2.093973 GTGTCCTCCACTGTACCATCAG 60.094 54.545 0.00 0.00 41.11 2.90
4769 4994 1.482593 GTCCTCCACTGTACCATCAGG 59.517 57.143 0.00 0.00 39.48 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 1.137675 CACGGATGGAGAATGAGCTGA 59.862 52.381 0.00 0.00 0.00 4.26
178 180 0.890683 GGCATGAAGGTTTCCTGTGG 59.109 55.000 0.00 0.00 32.13 4.17
371 374 1.133790 GCATGAGAATTCTGTGTGCCC 59.866 52.381 14.00 0.00 0.00 5.36
418 421 9.811995 ACACGTATATATGTGACATGTAAAAGT 57.188 29.630 32.29 10.26 44.02 2.66
436 439 1.268625 CGATGGCTAGGCACACGTATA 59.731 52.381 27.24 5.56 0.00 1.47
454 458 5.527214 CCATAGCCAAGAATATGTTTGTCGA 59.473 40.000 0.00 0.00 0.00 4.20
455 459 5.296780 ACCATAGCCAAGAATATGTTTGTCG 59.703 40.000 0.00 0.00 0.00 4.35
467 471 6.025539 AGTGATATATGGACCATAGCCAAGA 58.974 40.000 18.90 0.00 39.21 3.02
469 473 6.025539 AGAGTGATATATGGACCATAGCCAA 58.974 40.000 18.90 5.85 39.21 4.52
482 486 8.324191 TGGTTCTTCTTGGAAGAGTGATATAT 57.676 34.615 9.46 0.00 36.22 0.86
484 488 6.627087 TGGTTCTTCTTGGAAGAGTGATAT 57.373 37.500 9.46 0.00 36.22 1.63
527 533 5.554822 TTTAGTTTTGCAAGTATAGCCCG 57.445 39.130 0.00 0.00 0.00 6.13
672 685 1.320344 TGCGAGGAGGCATACTTCGT 61.320 55.000 10.87 0.00 38.17 3.85
673 686 0.179111 TTGCGAGGAGGCATACTTCG 60.179 55.000 0.00 0.00 43.52 3.79
674 687 2.024176 TTTGCGAGGAGGCATACTTC 57.976 50.000 0.00 0.00 43.52 3.01
675 688 2.489938 TTTTGCGAGGAGGCATACTT 57.510 45.000 0.00 0.00 43.52 2.24
677 690 3.489229 GGAAATTTTGCGAGGAGGCATAC 60.489 47.826 0.00 0.00 43.52 2.39
679 692 1.478105 GGAAATTTTGCGAGGAGGCAT 59.522 47.619 0.00 0.00 43.52 4.40
680 693 0.887933 GGAAATTTTGCGAGGAGGCA 59.112 50.000 0.00 0.00 42.12 4.75
681 694 1.133216 GAGGAAATTTTGCGAGGAGGC 59.867 52.381 0.00 0.00 0.00 4.70
682 695 2.436417 TGAGGAAATTTTGCGAGGAGG 58.564 47.619 0.00 0.00 0.00 4.30
683 696 4.708726 AATGAGGAAATTTTGCGAGGAG 57.291 40.909 0.00 0.00 0.00 3.69
687 700 8.055279 AGAGATAAAATGAGGAAATTTTGCGA 57.945 30.769 5.40 0.00 39.48 5.10
756 798 2.798148 ATCCGACCGTCAAGGCAACC 62.798 60.000 0.00 0.00 46.52 3.77
757 799 1.375523 ATCCGACCGTCAAGGCAAC 60.376 57.895 0.00 0.00 46.52 4.17
829 871 8.438676 ACAGCTAAAATATGTTACATCCAGAC 57.561 34.615 0.00 0.00 0.00 3.51
832 874 9.104965 GTGTACAGCTAAAATATGTTACATCCA 57.895 33.333 0.00 0.00 0.00 3.41
902 944 2.814913 CTTGGGTACTGGGTTCGGGC 62.815 65.000 0.00 0.00 0.00 6.13
949 992 1.881973 AGTTCGCACGGTCAGTTACTA 59.118 47.619 0.00 0.00 0.00 1.82
1537 1586 4.362476 CTTGCCCTTGCCGTTGCC 62.362 66.667 0.00 0.00 36.33 4.52
1538 1587 2.753931 CTTCTTGCCCTTGCCGTTGC 62.754 60.000 0.00 0.00 36.33 4.17
1539 1588 1.172180 TCTTCTTGCCCTTGCCGTTG 61.172 55.000 0.00 0.00 36.33 4.10
1671 1720 2.046314 ACAGAAATGACGGCGGGG 60.046 61.111 13.24 0.00 0.00 5.73
1682 1731 8.792633 CAAGTAGGTGATTAATTTCCACAGAAA 58.207 33.333 7.76 0.00 45.78 2.52
1741 1790 9.508642 TCCTACTATACTCACATCATGAACTAG 57.491 37.037 0.00 0.00 36.69 2.57
1762 1811 4.770795 AGTGCAGTAACAATCCATCCTAC 58.229 43.478 0.00 0.00 0.00 3.18
2039 2090 0.179189 GCCAAGAGATTTTGCGGACG 60.179 55.000 0.00 0.00 0.00 4.79
2091 2142 0.306533 CCCCGTTTCACGTGAACAAG 59.693 55.000 29.74 21.55 40.58 3.16
2153 2204 4.330894 TGTTTTGCAACGCATGAATTTCAA 59.669 33.333 0.00 0.00 38.76 2.69
2231 2282 9.997482 GAACAGTAAGACAAACATTTAACAAGA 57.003 29.630 0.00 0.00 0.00 3.02
2238 2289 5.594317 AGGCAGAACAGTAAGACAAACATTT 59.406 36.000 0.00 0.00 0.00 2.32
2285 2336 3.389983 AGAAACACACTTGGCTGGTAGTA 59.610 43.478 0.00 0.00 0.00 1.82
2286 2337 2.172717 AGAAACACACTTGGCTGGTAGT 59.827 45.455 0.00 0.00 0.00 2.73
2347 2398 2.333291 TGCATGGCACTGTGTTCAG 58.667 52.632 9.86 0.00 46.18 3.02
2374 2425 2.092968 CAGTGGCAGGTGGCTTTAGATA 60.093 50.000 5.03 0.00 44.01 1.98
2378 2429 1.074775 CCAGTGGCAGGTGGCTTTA 59.925 57.895 0.00 0.00 44.01 1.85
2418 2469 2.775384 ACTGTCAAGTACACAAGGGGAA 59.225 45.455 0.00 0.00 33.79 3.97
2419 2470 2.404559 ACTGTCAAGTACACAAGGGGA 58.595 47.619 0.00 0.00 33.79 4.81
2528 2581 6.893975 GTAAGCTGATTACATGGAACAACTGC 60.894 42.308 10.68 4.00 42.89 4.40
2537 2590 7.182761 CGAAGAAAAGTAAGCTGATTACATGG 58.817 38.462 17.04 0.00 45.34 3.66
2548 2601 5.631026 TGATGATTGCGAAGAAAAGTAAGC 58.369 37.500 0.00 0.00 0.00 3.09
2552 2605 4.326826 TCCTGATGATTGCGAAGAAAAGT 58.673 39.130 0.00 0.00 0.00 2.66
2562 2615 6.855836 TGTTCAAAACTATCCTGATGATTGC 58.144 36.000 0.00 0.00 34.76 3.56
2745 2817 8.615878 ACTATGCAAACACTGTTGTATTTAGA 57.384 30.769 0.00 0.00 35.70 2.10
2753 2825 8.503196 TCTGTTATAACTATGCAAACACTGTTG 58.497 33.333 16.33 0.00 0.00 3.33
2814 2927 2.033424 GCACAGGAAAACAGAAGTGGTC 59.967 50.000 0.00 0.00 0.00 4.02
2822 2935 3.181477 TGTTGGATTGCACAGGAAAACAG 60.181 43.478 0.00 0.00 0.00 3.16
2927 3040 4.437930 GCTGCTGATCAACCACTACAAATC 60.438 45.833 0.00 0.00 0.00 2.17
3093 3206 1.327690 TAGCTGTCGATGGTCCACCC 61.328 60.000 0.00 0.00 34.29 4.61
3226 3339 2.527497 TGGCATGGCAGAAAGAAATGA 58.473 42.857 19.43 0.00 0.00 2.57
3280 3401 3.002791 ACTGCTCGGTTCATACACAATG 58.997 45.455 0.00 0.00 36.88 2.82
3281 3402 3.002791 CACTGCTCGGTTCATACACAAT 58.997 45.455 0.00 0.00 0.00 2.71
3282 3403 2.412870 CACTGCTCGGTTCATACACAA 58.587 47.619 0.00 0.00 0.00 3.33
3283 3404 1.337728 CCACTGCTCGGTTCATACACA 60.338 52.381 0.00 0.00 0.00 3.72
3294 3415 1.000283 AGACTTGAGTTCCACTGCTCG 60.000 52.381 0.00 0.00 34.67 5.03
3311 3432 4.104776 CACACACAACCAATCAAACAGAC 58.895 43.478 0.00 0.00 0.00 3.51
3313 3434 3.858812 CACACACACAACCAATCAAACAG 59.141 43.478 0.00 0.00 0.00 3.16
3316 3437 3.256879 ACACACACACACAACCAATCAAA 59.743 39.130 0.00 0.00 0.00 2.69
3335 3456 1.416401 TCCTCACCTCAACCTGAACAC 59.584 52.381 0.00 0.00 0.00 3.32
3363 3487 3.628646 GATGTTCACCGCCTGCCCT 62.629 63.158 0.00 0.00 0.00 5.19
3540 3664 1.305718 GTGGAGCAGAGGAGAGGGT 60.306 63.158 0.00 0.00 0.00 4.34
3541 3665 1.001503 AGTGGAGCAGAGGAGAGGG 59.998 63.158 0.00 0.00 0.00 4.30
3542 3666 0.614415 ACAGTGGAGCAGAGGAGAGG 60.614 60.000 0.00 0.00 0.00 3.69
3602 3730 4.202441 AGGTTTCATCTGATCGAAATGGG 58.798 43.478 14.08 0.00 33.93 4.00
3603 3731 5.824904 AAGGTTTCATCTGATCGAAATGG 57.175 39.130 14.08 0.00 33.93 3.16
3615 3743 3.821841 CAAGCAACGGTAAGGTTTCATC 58.178 45.455 0.00 0.00 0.00 2.92
3618 3746 1.607148 AGCAAGCAACGGTAAGGTTTC 59.393 47.619 0.00 0.00 0.00 2.78
3622 3750 0.951558 AACAGCAAGCAACGGTAAGG 59.048 50.000 0.00 0.00 0.00 2.69
3624 3752 1.332375 GTGAACAGCAAGCAACGGTAA 59.668 47.619 0.00 0.00 0.00 2.85
3647 3780 3.493350 CGGATCAGACCAGACCATAAAGG 60.493 52.174 0.00 0.00 45.67 3.11
3653 3786 0.895530 GAACGGATCAGACCAGACCA 59.104 55.000 0.00 0.00 0.00 4.02
3654 3787 1.134965 CAGAACGGATCAGACCAGACC 60.135 57.143 0.00 0.00 0.00 3.85
3655 3788 1.546476 ACAGAACGGATCAGACCAGAC 59.454 52.381 0.00 0.00 0.00 3.51
3656 3789 1.924731 ACAGAACGGATCAGACCAGA 58.075 50.000 0.00 0.00 0.00 3.86
3657 3790 2.289072 ACAACAGAACGGATCAGACCAG 60.289 50.000 0.00 0.00 0.00 4.00
3658 3791 1.691976 ACAACAGAACGGATCAGACCA 59.308 47.619 0.00 0.00 0.00 4.02
3659 3792 2.457366 ACAACAGAACGGATCAGACC 57.543 50.000 0.00 0.00 0.00 3.85
3660 3793 3.430218 CAGAACAACAGAACGGATCAGAC 59.570 47.826 0.00 0.00 0.00 3.51
3661 3794 3.554960 CCAGAACAACAGAACGGATCAGA 60.555 47.826 0.00 0.00 0.00 3.27
3665 3798 1.420138 ACCCAGAACAACAGAACGGAT 59.580 47.619 0.00 0.00 0.00 4.18
3668 3801 1.597663 GACACCCAGAACAACAGAACG 59.402 52.381 0.00 0.00 0.00 3.95
3803 3936 2.387757 TCATCATCATCACCGTCCTGA 58.612 47.619 0.00 0.00 0.00 3.86
3819 3952 0.532862 ATCCAACGGCCACGATCATC 60.533 55.000 2.24 0.00 44.60 2.92
3822 3955 2.180204 CCATCCAACGGCCACGATC 61.180 63.158 2.24 0.00 44.60 3.69
3827 3960 0.616395 TAGAGACCATCCAACGGCCA 60.616 55.000 2.24 0.00 0.00 5.36
3828 3961 0.759346 ATAGAGACCATCCAACGGCC 59.241 55.000 0.00 0.00 0.00 6.13
3829 3962 1.689273 AGATAGAGACCATCCAACGGC 59.311 52.381 0.00 0.00 0.00 5.68
3830 3963 2.297597 GGAGATAGAGACCATCCAACGG 59.702 54.545 0.00 0.00 0.00 4.44
3831 3964 3.226777 AGGAGATAGAGACCATCCAACG 58.773 50.000 0.00 0.00 32.21 4.10
3832 3965 4.479158 AGAGGAGATAGAGACCATCCAAC 58.521 47.826 0.00 0.00 32.21 3.77
3833 3966 4.418526 AGAGAGGAGATAGAGACCATCCAA 59.581 45.833 0.00 0.00 32.21 3.53
3834 3967 3.986817 AGAGAGGAGATAGAGACCATCCA 59.013 47.826 0.00 0.00 32.21 3.41
3835 3968 4.335416 CAGAGAGGAGATAGAGACCATCC 58.665 52.174 0.00 0.00 0.00 3.51
3836 3969 3.758554 GCAGAGAGGAGATAGAGACCATC 59.241 52.174 0.00 0.00 0.00 3.51
3837 3970 3.500289 GGCAGAGAGGAGATAGAGACCAT 60.500 52.174 0.00 0.00 0.00 3.55
3838 3971 2.158534 GGCAGAGAGGAGATAGAGACCA 60.159 54.545 0.00 0.00 0.00 4.02
3840 3973 3.412386 GAGGCAGAGAGGAGATAGAGAC 58.588 54.545 0.00 0.00 0.00 3.36
3846 3979 1.832167 GGCGAGGCAGAGAGGAGAT 60.832 63.158 0.00 0.00 0.00 2.75
3853 3986 1.756408 ATCATCCTGGCGAGGCAGAG 61.756 60.000 25.32 15.96 39.57 3.35
3854 3987 1.763655 ATCATCCTGGCGAGGCAGA 60.764 57.895 25.32 10.44 39.57 4.26
3858 3991 0.037512 CTAGCATCATCCTGGCGAGG 60.038 60.000 8.78 8.78 41.39 4.63
3861 3994 1.001746 ACATCTAGCATCATCCTGGCG 59.998 52.381 0.00 0.00 0.00 5.69
3863 3996 4.879197 TGTACATCTAGCATCATCCTGG 57.121 45.455 0.00 0.00 0.00 4.45
3993 4129 0.321122 GTTCACAGCACCAGAGGGAG 60.321 60.000 0.00 0.00 38.05 4.30
3995 4131 1.302832 GGTTCACAGCACCAGAGGG 60.303 63.158 0.00 0.00 41.29 4.30
3996 4132 0.604780 CAGGTTCACAGCACCAGAGG 60.605 60.000 0.00 0.00 36.67 3.69
4078 4216 4.520179 CTCATCTCATTTCACCATGGACA 58.480 43.478 21.47 0.04 0.00 4.02
4079 4217 3.881688 CCTCATCTCATTTCACCATGGAC 59.118 47.826 21.47 0.00 0.00 4.02
4080 4218 3.686405 GCCTCATCTCATTTCACCATGGA 60.686 47.826 21.47 0.00 0.00 3.41
4103 4241 0.233332 GTGCGCTCGCCTCATATTTC 59.767 55.000 9.73 0.00 41.09 2.17
4104 4242 0.461870 TGTGCGCTCGCCTCATATTT 60.462 50.000 9.73 0.00 41.09 1.40
4161 4321 2.224402 ACAGGCTGAGTCTCTTGGAAAC 60.224 50.000 23.66 0.00 0.00 2.78
4173 4333 1.915266 TGTCCCCTGACAGGCTGAG 60.915 63.158 23.66 9.01 46.40 3.35
4207 4368 2.772189 CGTGCTACGAGCTGCAAC 59.228 61.111 1.02 0.00 46.05 4.17
4208 4369 3.112075 GCGTGCTACGAGCTGCAA 61.112 61.111 11.94 0.00 46.05 4.08
4296 4467 4.342092 GCATAATAAACCACAAGAGGCCAT 59.658 41.667 5.01 0.00 0.00 4.40
4315 4486 6.035650 GCTACAGAAACACTTCGTATTGCATA 59.964 38.462 0.00 0.00 36.61 3.14
4316 4487 5.163854 GCTACAGAAACACTTCGTATTGCAT 60.164 40.000 0.00 0.00 36.61 3.96
4317 4488 4.151689 GCTACAGAAACACTTCGTATTGCA 59.848 41.667 0.00 0.00 36.61 4.08
4323 4494 4.554723 GCAAATGCTACAGAAACACTTCGT 60.555 41.667 0.00 0.00 35.93 3.85
4325 4496 4.858935 TGCAAATGCTACAGAAACACTTC 58.141 39.130 6.97 0.00 42.66 3.01
4328 4499 3.568538 CCTGCAAATGCTACAGAAACAC 58.431 45.455 6.97 0.00 42.66 3.32
4355 4526 2.205074 GTATGATGACCAGTTCAGCCG 58.795 52.381 0.00 0.00 40.16 5.52
4391 4562 4.195334 CCCCCATTCGCCTCAGGG 62.195 72.222 0.00 0.00 41.12 4.45
4476 4659 0.100146 TACGTACGCACACACACACA 59.900 50.000 16.72 0.00 0.00 3.72
4477 4660 0.499761 GTACGTACGCACACACACAC 59.500 55.000 16.72 0.00 0.00 3.82
4488 4671 2.347150 TGCATGCATTCAAGTACGTACG 59.653 45.455 18.46 15.01 0.00 3.67
4521 4704 1.768684 TTCAAGAACCGCCCTCTGCT 61.769 55.000 0.00 0.00 38.05 4.24
4567 4760 4.722700 AATCTTGCCGCCGCCTGT 62.723 61.111 0.00 0.00 0.00 4.00
4615 4808 3.466836 CACTCAACTTACTGTGAAGCCA 58.533 45.455 0.00 0.00 32.72 4.75
4628 4821 2.930826 ACGGTCAAATCCACTCAACT 57.069 45.000 0.00 0.00 0.00 3.16
4629 4822 2.096417 CGAACGGTCAAATCCACTCAAC 60.096 50.000 0.00 0.00 0.00 3.18
4714 4939 8.642148 GCAAATAGCTAGGGGGTAACTACCAG 62.642 50.000 8.16 0.00 43.65 4.00
4715 4940 6.923973 GCAAATAGCTAGGGGGTAACTACCA 61.924 48.000 8.16 0.00 43.65 3.25
4716 4941 4.504514 GCAAATAGCTAGGGGGTAACTACC 60.505 50.000 0.00 0.00 42.23 3.18
4717 4942 4.504514 GGCAAATAGCTAGGGGGTAACTAC 60.505 50.000 0.00 0.00 44.79 2.73
4718 4943 3.649502 GGCAAATAGCTAGGGGGTAACTA 59.350 47.826 0.00 0.00 44.79 2.24
4719 4944 2.442126 GGCAAATAGCTAGGGGGTAACT 59.558 50.000 0.00 0.00 44.79 2.24
4720 4945 2.488528 GGGCAAATAGCTAGGGGGTAAC 60.489 54.545 0.00 0.00 44.79 2.50
4721 4946 1.778484 GGGCAAATAGCTAGGGGGTAA 59.222 52.381 0.00 0.00 44.79 2.85
4722 4947 1.060876 AGGGCAAATAGCTAGGGGGTA 60.061 52.381 0.00 0.00 44.79 3.69
4723 4948 0.328548 AGGGCAAATAGCTAGGGGGT 60.329 55.000 0.00 0.00 44.79 4.95
4724 4949 0.402121 GAGGGCAAATAGCTAGGGGG 59.598 60.000 0.00 0.00 44.79 5.40
4725 4950 0.402121 GGAGGGCAAATAGCTAGGGG 59.598 60.000 0.00 0.00 44.79 4.79
4726 4951 1.140312 TGGAGGGCAAATAGCTAGGG 58.860 55.000 0.00 0.00 44.79 3.53
4727 4952 1.541233 CGTGGAGGGCAAATAGCTAGG 60.541 57.143 0.00 0.00 44.79 3.02
4728 4953 1.139058 ACGTGGAGGGCAAATAGCTAG 59.861 52.381 0.00 0.00 44.79 3.42
4729 4954 1.134521 CACGTGGAGGGCAAATAGCTA 60.135 52.381 7.95 0.00 44.79 3.32
4730 4955 0.392998 CACGTGGAGGGCAAATAGCT 60.393 55.000 7.95 0.00 44.79 3.32
4731 4956 0.676782 ACACGTGGAGGGCAAATAGC 60.677 55.000 21.57 0.00 44.65 2.97
4732 4957 1.369625 GACACGTGGAGGGCAAATAG 58.630 55.000 21.57 0.00 0.00 1.73
4733 4958 0.035820 GGACACGTGGAGGGCAAATA 60.036 55.000 21.57 0.00 0.00 1.40
4734 4959 1.303317 GGACACGTGGAGGGCAAAT 60.303 57.895 21.57 0.00 0.00 2.32
4735 4960 2.112297 GGACACGTGGAGGGCAAA 59.888 61.111 21.57 0.00 0.00 3.68
4736 4961 2.847234 AGGACACGTGGAGGGCAA 60.847 61.111 21.57 0.00 0.00 4.52
4737 4962 3.311110 GAGGACACGTGGAGGGCA 61.311 66.667 21.57 0.00 0.00 5.36
4738 4963 4.083862 GGAGGACACGTGGAGGGC 62.084 72.222 21.57 4.87 0.00 5.19
4739 4964 2.603473 TGGAGGACACGTGGAGGG 60.603 66.667 21.57 0.00 0.00 4.30
4740 4965 2.657237 GTGGAGGACACGTGGAGG 59.343 66.667 21.57 0.00 40.85 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.