Multiple sequence alignment - TraesCS3A01G441500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G441500 chr3A 100.000 5074 0 0 1 5074 683519865 683514792 0.000000e+00 9371
1 TraesCS3A01G441500 chr3B 84.793 2900 211 117 1 2745 723994805 723991981 0.000000e+00 2700
2 TraesCS3A01G441500 chr3B 88.810 1966 122 56 2752 4675 723991908 723989999 0.000000e+00 2322
3 TraesCS3A01G441500 chr3D 88.270 1526 100 43 1200 2675 546810836 546809340 0.000000e+00 1753
4 TraesCS3A01G441500 chr3D 92.827 1199 56 22 3 1180 546812384 546811195 0.000000e+00 1711
5 TraesCS3A01G441500 chr3D 89.241 1264 75 36 3096 4321 546808453 546807213 0.000000e+00 1524
6 TraesCS3A01G441500 chr3D 84.455 817 51 30 4317 5074 546806868 546806069 0.000000e+00 736
7 TraesCS3A01G441500 chr3D 82.609 276 20 13 2814 3069 546809194 546808927 8.550000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G441500 chr3A 683514792 683519865 5073 True 9371.0 9371 100.0000 1 5074 1 chr3A.!!$R1 5073
1 TraesCS3A01G441500 chr3B 723989999 723994805 4806 True 2511.0 2700 86.8015 1 4675 2 chr3B.!!$R1 4674
2 TraesCS3A01G441500 chr3D 546806069 546812384 6315 True 1188.6 1753 87.4804 3 5074 5 chr3D.!!$R1 5071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 232 1.196012 GACCGACCCCTTCTGATCTT 58.804 55.0 0.00 0.0 0.00 2.40 F
1173 1204 0.105658 TCTCCCTCCCTTCGGTATGG 60.106 60.0 0.00 0.0 0.00 2.74 F
1231 1602 0.247460 CGCCATGAAGTCTCCAGTGA 59.753 55.0 0.00 0.0 0.00 3.41 F
2689 3207 0.036105 CACATGTAGGCTGCACCAGA 60.036 55.0 7.65 0.0 43.14 3.86 F
3335 4387 0.321564 TTTGGTGAGAGGGACGCATG 60.322 55.0 0.00 0.0 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1213 0.043334 TGAAAGAGAGAGGGAGGGGG 59.957 60.0 0.00 0.0 0.00 5.40 R
2509 3011 0.032403 AAGCAACGCGTGTAGGTGTA 59.968 50.0 14.98 0.0 0.00 2.90 R
2801 3384 0.107017 GTCCCCATCCCATGTGTCAG 60.107 60.0 0.00 0.0 0.00 3.51 R
3514 4570 0.175760 AGCCACTAATCGATGCACGT 59.824 50.0 0.00 0.0 43.13 4.49 R
4771 6233 0.586802 GCGAAATCGACCCCAATAGC 59.413 55.0 7.06 0.0 43.02 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 2.686835 GACAGCTCCCCTCTGCCT 60.687 66.667 0.00 0.00 35.04 4.75
29 31 2.122768 CTCCCCTCTGCCTACTCATTT 58.877 52.381 0.00 0.00 0.00 2.32
33 45 3.711704 CCCCTCTGCCTACTCATTTTAGA 59.288 47.826 0.00 0.00 0.00 2.10
34 46 4.164221 CCCCTCTGCCTACTCATTTTAGAA 59.836 45.833 0.00 0.00 0.00 2.10
36 48 6.360618 CCCTCTGCCTACTCATTTTAGAATT 58.639 40.000 0.00 0.00 0.00 2.17
70 82 4.005650 TCAGAACCTCTTTTGCTATGCAG 58.994 43.478 0.00 0.00 40.61 4.41
125 137 4.873827 TGCTAAACGACATTTGAGATACCC 59.126 41.667 0.00 0.00 0.00 3.69
217 232 1.196012 GACCGACCCCTTCTGATCTT 58.804 55.000 0.00 0.00 0.00 2.40
228 243 4.164988 CCCTTCTGATCTTCAATACCCACT 59.835 45.833 0.00 0.00 0.00 4.00
234 249 1.899814 TCTTCAATACCCACTCTGCGT 59.100 47.619 0.00 0.00 0.00 5.24
237 252 3.728076 TCAATACCCACTCTGCGTATC 57.272 47.619 0.00 0.00 0.00 2.24
261 276 4.665212 CATTGTTAATCTTCACGCTGCAT 58.335 39.130 0.00 0.00 0.00 3.96
265 280 1.538047 AATCTTCACGCTGCATGGTT 58.462 45.000 0.00 0.00 0.00 3.67
303 318 4.765273 TCTGCCGTGTATGATTGTACAAT 58.235 39.130 20.93 20.93 36.42 2.71
362 381 5.382616 TGATCTATGGACGGCTCTTTACTA 58.617 41.667 0.00 0.00 0.00 1.82
425 444 7.814587 CCTTCCATTTTGACCATTTTACTCTTC 59.185 37.037 0.00 0.00 0.00 2.87
428 447 7.505585 TCCATTTTGACCATTTTACTCTTCACT 59.494 33.333 0.00 0.00 0.00 3.41
501 522 4.069869 TTGGAGAGCACTGCAAGC 57.930 55.556 13.75 2.71 46.43 4.01
613 634 2.360475 GGGCCACCTGCAGAGAAC 60.360 66.667 17.39 1.43 43.89 3.01
647 668 4.816385 ACCAGCAAACTGTCATTATATCCG 59.184 41.667 0.00 0.00 42.81 4.18
649 670 5.050091 CCAGCAAACTGTCATTATATCCGAC 60.050 44.000 0.00 0.00 42.81 4.79
702 723 4.910195 TGATTTGCCATCAGACAAGTAGT 58.090 39.130 0.00 0.00 0.00 2.73
703 724 6.048732 TGATTTGCCATCAGACAAGTAGTA 57.951 37.500 0.00 0.00 0.00 1.82
704 725 6.108687 TGATTTGCCATCAGACAAGTAGTAG 58.891 40.000 0.00 0.00 0.00 2.57
714 735 7.584122 TCAGACAAGTAGTAGAATACCATCC 57.416 40.000 0.00 0.00 44.47 3.51
945 967 5.457473 GCATAGCTACGAGAAAGAAAGTCTC 59.543 44.000 0.00 0.00 38.54 3.36
958 982 2.734276 AAGTCTCGTTGAAGAGAGGC 57.266 50.000 0.00 0.00 46.68 4.70
1006 1037 0.179936 GCTAAGAGGCAGCATGGAGT 59.820 55.000 0.00 0.00 38.93 3.85
1025 1056 0.256752 TGTGCAGGGGAAGATGATGG 59.743 55.000 0.00 0.00 0.00 3.51
1173 1204 0.105658 TCTCCCTCCCTTCGGTATGG 60.106 60.000 0.00 0.00 0.00 2.74
1181 1212 1.344763 CCCTTCGGTATGGTCTCCATC 59.655 57.143 4.45 0.00 40.74 3.51
1182 1213 1.344763 CCTTCGGTATGGTCTCCATCC 59.655 57.143 4.45 6.02 40.74 3.51
1183 1214 1.344763 CTTCGGTATGGTCTCCATCCC 59.655 57.143 4.45 2.61 40.74 3.85
1226 1597 1.134699 TGATCACGCCATGAAGTCTCC 60.135 52.381 0.00 0.00 41.93 3.71
1231 1602 0.247460 CGCCATGAAGTCTCCAGTGA 59.753 55.000 0.00 0.00 0.00 3.41
1232 1603 1.134580 CGCCATGAAGTCTCCAGTGAT 60.135 52.381 0.00 0.00 0.00 3.06
1234 1605 2.941720 GCCATGAAGTCTCCAGTGATTC 59.058 50.000 0.00 0.00 0.00 2.52
1235 1606 3.370315 GCCATGAAGTCTCCAGTGATTCT 60.370 47.826 0.00 0.00 0.00 2.40
1236 1607 4.190001 CCATGAAGTCTCCAGTGATTCTG 58.810 47.826 0.00 0.00 43.27 3.02
1278 1649 2.941415 GCCCCGATCATATTCATGGTCC 60.941 54.545 0.00 0.00 38.84 4.46
1304 1675 7.063898 CGCTCATATTTTCTTCAACTTCTCTGA 59.936 37.037 0.00 0.00 0.00 3.27
1333 1725 2.182827 TCTGGTGAGGAGGATGTCAAG 58.817 52.381 0.00 0.00 0.00 3.02
1336 1728 1.677217 GGTGAGGAGGATGTCAAGTGC 60.677 57.143 0.00 0.00 0.00 4.40
1359 1757 3.933332 GTCACACAGCCATAGTAGTTTCC 59.067 47.826 0.00 0.00 0.00 3.13
1360 1758 3.838317 TCACACAGCCATAGTAGTTTCCT 59.162 43.478 0.00 0.00 0.00 3.36
1369 1767 5.774630 CCATAGTAGTTTCCTCTCGATTCC 58.225 45.833 0.00 0.00 0.00 3.01
1431 1839 0.318107 GTTGTGAGTGGCATGCACAC 60.318 55.000 23.70 23.70 41.72 3.82
1446 1854 3.603532 TGCACACTGGAATCAATCTCTC 58.396 45.455 0.00 0.00 0.00 3.20
1450 1858 3.118956 ACACTGGAATCAATCTCTCGGTC 60.119 47.826 0.00 0.00 0.00 4.79
1454 1862 2.370189 GGAATCAATCTCTCGGTCCCAT 59.630 50.000 0.00 0.00 0.00 4.00
1481 1897 6.262944 CCCATTTGTCAATATGCACTAGCTAA 59.737 38.462 0.00 0.00 42.74 3.09
1484 1900 5.614324 TGTCAATATGCACTAGCTAACCT 57.386 39.130 0.00 0.00 42.74 3.50
1485 1901 6.724893 TGTCAATATGCACTAGCTAACCTA 57.275 37.500 0.00 0.00 42.74 3.08
1519 1935 3.391296 TCCTTGGATGCCCACTATTCTAC 59.609 47.826 0.00 0.00 43.41 2.59
1520 1936 3.392616 CCTTGGATGCCCACTATTCTACT 59.607 47.826 0.00 0.00 43.41 2.57
1521 1937 4.503991 CCTTGGATGCCCACTATTCTACTC 60.504 50.000 0.00 0.00 43.41 2.59
1522 1938 2.972713 TGGATGCCCACTATTCTACTCC 59.027 50.000 0.00 0.00 37.58 3.85
1523 1939 3.243724 GGATGCCCACTATTCTACTCCT 58.756 50.000 0.00 0.00 0.00 3.69
1524 1940 4.140782 TGGATGCCCACTATTCTACTCCTA 60.141 45.833 0.00 0.00 37.58 2.94
1561 1977 3.558746 CCTGCATTCAGTCCTCCCATATC 60.559 52.174 0.00 0.00 38.66 1.63
1570 1986 1.760613 TCCTCCCATATCGTGTGTTCC 59.239 52.381 0.00 0.00 0.00 3.62
1571 1987 1.202651 CCTCCCATATCGTGTGTTCCC 60.203 57.143 0.00 0.00 0.00 3.97
1577 1993 0.906775 TATCGTGTGTTCCCTTCCCC 59.093 55.000 0.00 0.00 0.00 4.81
1579 1995 1.302511 CGTGTGTTCCCTTCCCCTG 60.303 63.158 0.00 0.00 0.00 4.45
1583 1999 4.062032 GTTCCCTTCCCCTGCCCC 62.062 72.222 0.00 0.00 0.00 5.80
1605 2021 2.221906 CTGCAGCCCCATTGAAGTGC 62.222 60.000 0.00 0.00 0.00 4.40
1674 2090 5.246883 CCCTCTCATTTCCAATCACCTTTTT 59.753 40.000 0.00 0.00 0.00 1.94
1675 2091 6.437162 CCCTCTCATTTCCAATCACCTTTTTA 59.563 38.462 0.00 0.00 0.00 1.52
1676 2092 7.363268 CCCTCTCATTTCCAATCACCTTTTTAG 60.363 40.741 0.00 0.00 0.00 1.85
1677 2093 7.394359 CCTCTCATTTCCAATCACCTTTTTAGA 59.606 37.037 0.00 0.00 0.00 2.10
1702 2136 7.911651 ACATCATAAAGGTTGAAAGAGAGAGA 58.088 34.615 0.00 0.00 0.00 3.10
1723 2157 0.889994 GGCACTGCATCAATCAACCA 59.110 50.000 2.82 0.00 0.00 3.67
1782 2218 1.067821 CGCCCTAGCTAGAAACCAGAG 59.932 57.143 22.70 2.43 36.60 3.35
1828 2264 1.203994 ACGTATCACCTTGTTCCTCCG 59.796 52.381 0.00 0.00 0.00 4.63
1851 2287 3.815401 ACTCAGAAAGGGACAAATGAACG 59.185 43.478 0.00 0.00 0.00 3.95
1995 2456 1.362717 CTCAAGGTGTCGGTCGTGT 59.637 57.895 0.00 0.00 0.00 4.49
2006 2467 1.341852 TCGGTCGTGTTCTTGGAATCA 59.658 47.619 0.00 0.00 0.00 2.57
2025 2486 2.100605 ACGGAGGTGAAGCTGAAATC 57.899 50.000 0.00 0.00 0.00 2.17
2031 2492 1.202222 GGTGAAGCTGAAATCGCCATG 60.202 52.381 10.26 0.00 44.01 3.66
2032 2493 1.739466 GTGAAGCTGAAATCGCCATGA 59.261 47.619 0.00 0.00 0.00 3.07
2039 2500 3.419915 CTGAAATCGCCATGAGAAAACG 58.580 45.455 0.00 0.00 0.00 3.60
2040 2501 3.070748 TGAAATCGCCATGAGAAAACGA 58.929 40.909 0.00 0.00 37.15 3.85
2108 2569 2.026822 AGGTGTGATTCCAAAGCGAGAT 60.027 45.455 0.00 0.00 33.37 2.75
2111 2575 4.034510 GGTGTGATTCCAAAGCGAGATTAG 59.965 45.833 0.00 0.00 0.00 1.73
2150 2614 4.453819 GTGTCTTTCTTGGATCTTGACCTG 59.546 45.833 0.00 0.00 0.00 4.00
2240 2704 5.490139 TCGATCAGCAAATGGATTCTTTC 57.510 39.130 0.00 0.00 0.00 2.62
2261 2725 7.556275 TCTTTCCCCATTAATGCAAAGTACTAG 59.444 37.037 20.79 0.00 0.00 2.57
2301 2773 0.617413 CCTCTGGCTCACAACATCCT 59.383 55.000 0.00 0.00 0.00 3.24
2345 2835 1.475213 CCCTTTCCTGCTCCGTATTCC 60.475 57.143 0.00 0.00 0.00 3.01
2370 2860 2.031683 GGTCAAATACGGCACATGCTAC 59.968 50.000 3.48 0.00 41.70 3.58
2439 2929 6.376177 TGTACGCGGACTTATTAGATGTATG 58.624 40.000 24.23 0.00 0.00 2.39
2440 2930 4.235360 ACGCGGACTTATTAGATGTATGC 58.765 43.478 12.47 0.00 0.00 3.14
2509 3011 8.122952 GCATCTTTGAACGTGCTTTTATATACT 58.877 33.333 0.00 0.00 34.85 2.12
2512 3014 9.642327 TCTTTGAACGTGCTTTTATATACTACA 57.358 29.630 0.00 0.00 0.00 2.74
2513 3015 9.685005 CTTTGAACGTGCTTTTATATACTACAC 57.315 33.333 0.00 0.00 0.00 2.90
2514 3016 7.760131 TGAACGTGCTTTTATATACTACACC 57.240 36.000 0.00 0.00 0.00 4.16
2516 3019 8.685427 TGAACGTGCTTTTATATACTACACCTA 58.315 33.333 0.00 0.00 0.00 3.08
2552 3057 3.059306 CGTCGCCATGCAAATTTTAACTG 59.941 43.478 0.00 0.00 0.00 3.16
2554 3059 2.672381 CGCCATGCAAATTTTAACTGGG 59.328 45.455 0.00 0.00 0.00 4.45
2598 3108 1.480312 CCCCACAGTTTGGTTGATCCA 60.480 52.381 0.00 0.00 45.25 3.41
2624 3134 6.367422 GTCAGTCAAACAAAAACATTTCACCA 59.633 34.615 0.00 0.00 0.00 4.17
2668 3186 1.681264 CAGTTTTGACCCAACACCTCC 59.319 52.381 0.00 0.00 0.00 4.30
2677 3195 0.321210 CCAACACCTCCGCACATGTA 60.321 55.000 0.00 0.00 0.00 2.29
2679 3197 0.036388 AACACCTCCGCACATGTAGG 60.036 55.000 10.33 10.33 35.14 3.18
2680 3198 1.815421 CACCTCCGCACATGTAGGC 60.815 63.158 11.60 5.29 31.98 3.93
2681 3199 1.990060 ACCTCCGCACATGTAGGCT 60.990 57.895 11.60 0.00 31.98 4.58
2682 3200 1.522355 CCTCCGCACATGTAGGCTG 60.522 63.158 13.15 4.32 0.00 4.85
2683 3201 2.125147 TCCGCACATGTAGGCTGC 60.125 61.111 13.15 0.00 0.00 5.25
2684 3202 2.436469 CCGCACATGTAGGCTGCA 60.436 61.111 7.99 7.99 0.00 4.41
2685 3203 2.753966 CCGCACATGTAGGCTGCAC 61.754 63.158 7.65 0.00 0.00 4.57
2686 3204 2.753966 CGCACATGTAGGCTGCACC 61.754 63.158 7.65 0.00 39.61 5.01
2688 3206 1.651240 GCACATGTAGGCTGCACCAG 61.651 60.000 7.65 3.71 43.14 4.00
2689 3207 0.036105 CACATGTAGGCTGCACCAGA 60.036 55.000 7.65 0.00 43.14 3.86
2690 3208 0.914644 ACATGTAGGCTGCACCAGAT 59.085 50.000 7.65 0.00 43.14 2.90
2691 3209 2.118679 ACATGTAGGCTGCACCAGATA 58.881 47.619 7.65 0.00 43.14 1.98
2692 3210 2.158900 ACATGTAGGCTGCACCAGATAC 60.159 50.000 7.65 0.00 43.14 2.24
2700 3218 4.533707 AGGCTGCACCAGATACATACATAT 59.466 41.667 0.50 0.00 43.14 1.78
2701 3219 4.633126 GGCTGCACCAGATACATACATATG 59.367 45.833 0.50 0.00 38.86 1.78
2703 3221 5.569428 GCTGCACCAGATACATACATATGGA 60.569 44.000 7.80 0.00 39.24 3.41
2707 3225 6.815641 GCACCAGATACATACATATGGAAGAG 59.184 42.308 7.80 0.00 39.24 2.85
2713 3231 8.307483 AGATACATACATATGGAAGAGGAAACG 58.693 37.037 7.80 0.00 38.00 3.60
2724 3242 7.619964 TGGAAGAGGAAACGGTATTTTAATC 57.380 36.000 0.00 0.00 0.00 1.75
2743 3261 8.477984 TTTAATCAGAATACAAAATGCTTGGC 57.522 30.769 0.00 0.00 0.00 4.52
2744 3262 5.664294 ATCAGAATACAAAATGCTTGGCA 57.336 34.783 0.00 0.00 44.86 4.92
2745 3263 4.808558 TCAGAATACAAAATGCTTGGCAC 58.191 39.130 0.00 0.00 43.04 5.01
2746 3264 3.609373 CAGAATACAAAATGCTTGGCACG 59.391 43.478 0.00 0.00 43.04 5.34
2749 3267 2.028733 CAAAATGCTTGGCACGGGC 61.029 57.895 0.00 0.00 43.04 6.13
2750 3268 3.572196 AAAATGCTTGGCACGGGCG 62.572 57.895 2.17 0.00 43.04 6.13
2762 3345 0.802607 CACGGGCGAAGAGCTCTTAC 60.803 60.000 28.53 21.99 46.47 2.34
2764 3347 1.022735 CGGGCGAAGAGCTCTTACTA 58.977 55.000 28.53 0.00 46.47 1.82
2765 3348 1.404391 CGGGCGAAGAGCTCTTACTAA 59.596 52.381 28.53 0.00 46.47 2.24
2766 3349 2.034812 CGGGCGAAGAGCTCTTACTAAT 59.965 50.000 28.53 5.94 46.47 1.73
2768 3351 3.804873 GGGCGAAGAGCTCTTACTAATTG 59.195 47.826 28.53 11.08 44.82 2.32
2769 3352 5.270967 GGGCGAAGAGCTCTTACTAATTGG 61.271 50.000 28.53 7.92 44.82 3.16
2782 3365 8.153221 TCTTACTAATTGGTTAGGTTGGATGA 57.847 34.615 7.93 0.00 41.33 2.92
2792 3375 0.532115 GGTTGGATGACAATGTGCCC 59.468 55.000 0.00 0.00 41.95 5.36
2796 3379 0.451783 GGATGACAATGTGCCCGTTC 59.548 55.000 0.00 0.00 0.00 3.95
2801 3384 0.383949 ACAATGTGCCCGTTCAACAC 59.616 50.000 0.00 0.00 34.86 3.32
2803 3386 0.667993 AATGTGCCCGTTCAACACTG 59.332 50.000 0.00 0.00 35.33 3.66
2827 3411 4.231439 GGGATGGGGACGGCGTAC 62.231 72.222 15.37 15.37 0.00 3.67
2828 3412 3.463585 GGATGGGGACGGCGTACA 61.464 66.667 25.53 18.38 0.00 2.90
2858 3446 4.536065 ACATTGCATGTACAACAAAGACG 58.464 39.130 18.45 10.88 42.78 4.18
2868 3456 4.577687 ACAACAAAGACGCACATATACG 57.422 40.909 0.00 0.00 0.00 3.06
2917 3515 4.253685 TGTTTTATGTCTCTAGCCAGCAC 58.746 43.478 0.00 0.00 0.00 4.40
2920 3518 2.202810 GTCTCTAGCCAGCACGCC 60.203 66.667 0.00 0.00 0.00 5.68
2935 3533 3.385111 AGCACGCCTCTAGCTAGTTTAAT 59.615 43.478 20.10 2.55 40.39 1.40
2936 3534 4.120589 GCACGCCTCTAGCTAGTTTAATT 58.879 43.478 20.10 0.00 40.39 1.40
2937 3535 5.068723 AGCACGCCTCTAGCTAGTTTAATTA 59.931 40.000 20.10 0.00 40.39 1.40
2938 3536 5.751990 GCACGCCTCTAGCTAGTTTAATTAA 59.248 40.000 20.10 0.00 40.39 1.40
2939 3537 6.074249 GCACGCCTCTAGCTAGTTTAATTAAG 60.074 42.308 20.10 7.63 40.39 1.85
2940 3538 7.201145 CACGCCTCTAGCTAGTTTAATTAAGA 58.799 38.462 20.10 0.00 40.39 2.10
2941 3539 7.868415 CACGCCTCTAGCTAGTTTAATTAAGAT 59.132 37.037 20.10 0.00 40.39 2.40
2942 3540 7.868415 ACGCCTCTAGCTAGTTTAATTAAGATG 59.132 37.037 20.10 6.28 40.39 2.90
2943 3541 7.148722 CGCCTCTAGCTAGTTTAATTAAGATGC 60.149 40.741 20.10 6.80 40.39 3.91
2944 3542 7.875554 GCCTCTAGCTAGTTTAATTAAGATGCT 59.124 37.037 20.10 15.83 38.99 3.79
2945 3543 9.418045 CCTCTAGCTAGTTTAATTAAGATGCTC 57.582 37.037 20.10 1.14 0.00 4.26
2950 3548 7.497249 AGCTAGTTTAATTAAGATGCTCTGTGG 59.503 37.037 0.00 0.00 0.00 4.17
2951 3549 7.281100 GCTAGTTTAATTAAGATGCTCTGTGGT 59.719 37.037 0.00 0.00 0.00 4.16
2952 3550 7.383102 AGTTTAATTAAGATGCTCTGTGGTG 57.617 36.000 0.00 0.00 0.00 4.17
2953 3551 6.375455 AGTTTAATTAAGATGCTCTGTGGTGG 59.625 38.462 0.00 0.00 0.00 4.61
2954 3552 4.574674 AATTAAGATGCTCTGTGGTGGA 57.425 40.909 0.00 0.00 0.00 4.02
2955 3553 4.574674 ATTAAGATGCTCTGTGGTGGAA 57.425 40.909 0.00 0.00 0.00 3.53
2956 3554 2.957402 AAGATGCTCTGTGGTGGAAA 57.043 45.000 0.00 0.00 0.00 3.13
2980 3581 7.571080 AAAAACTCAAACCGTTAGGATGTTA 57.429 32.000 0.00 0.00 41.02 2.41
2981 3582 7.571080 AAAACTCAAACCGTTAGGATGTTAA 57.429 32.000 0.00 0.00 41.02 2.01
2993 3594 7.926555 CCGTTAGGATGTTAATGTCATCTTAGT 59.073 37.037 4.97 0.00 40.76 2.24
3006 3607 8.691661 ATGTCATCTTAGTGTTTTAACTGGTT 57.308 30.769 0.00 0.00 0.00 3.67
3013 3614 9.206870 TCTTAGTGTTTTAACTGGTTATTACGG 57.793 33.333 0.00 0.00 0.00 4.02
3075 3680 2.268920 CCTTTGCCCTCGCTGCTA 59.731 61.111 0.00 0.00 35.36 3.49
3114 4166 4.537751 AGGTTGTCCTTGATCGATAGAGA 58.462 43.478 0.00 0.00 46.37 3.10
3115 4167 5.144100 AGGTTGTCCTTGATCGATAGAGAT 58.856 41.667 0.00 0.00 46.37 2.75
3116 4168 5.010516 AGGTTGTCCTTGATCGATAGAGATG 59.989 44.000 0.00 0.00 46.37 2.90
3158 4210 2.117137 CCGCACGTGATGAGTATACAC 58.883 52.381 22.23 0.00 0.00 2.90
3206 4258 7.902920 AATTAACTTATCAGACCATGCCATT 57.097 32.000 0.00 0.00 0.00 3.16
3209 4261 4.458397 ACTTATCAGACCATGCCATTGAG 58.542 43.478 0.00 0.00 0.00 3.02
3218 4270 2.159476 CCATGCCATTGAGACGAACAAG 60.159 50.000 0.00 0.00 0.00 3.16
3260 4312 1.601759 AGTGCAGGTCATGTGGTGC 60.602 57.895 8.41 8.41 36.42 5.01
3278 4330 3.622514 CCAGAACGAGGGAGGGAG 58.377 66.667 0.00 0.00 0.00 4.30
3283 4335 1.077334 AGAACGAGGGAGGGAGAGAAA 59.923 52.381 0.00 0.00 0.00 2.52
3318 4370 5.183904 GCAAGTGGTCAAGATAGAATGGTTT 59.816 40.000 0.00 0.00 0.00 3.27
3335 4387 0.321564 TTTGGTGAGAGGGACGCATG 60.322 55.000 0.00 0.00 0.00 4.06
3377 4429 7.340699 CACGCAGCTCTAATATTCTTTAACTG 58.659 38.462 0.00 0.00 0.00 3.16
3417 4470 3.583276 TTGCCGCTACCACCACTCG 62.583 63.158 0.00 0.00 0.00 4.18
3423 4476 0.455005 GCTACCACCACTCGAGTACC 59.545 60.000 19.57 0.00 0.00 3.34
3425 4478 2.376109 CTACCACCACTCGAGTACCAT 58.624 52.381 19.57 5.78 0.00 3.55
3460 4515 3.062909 CACAATTAACCACCGTCCGTATG 59.937 47.826 0.00 0.00 0.00 2.39
3483 4538 4.276926 GGCTAATAATCAAGTCAAGGCCTG 59.723 45.833 5.69 0.00 33.87 4.85
3491 4546 4.461119 TCAAGGCCTGACCGAGAT 57.539 55.556 5.69 0.00 46.52 2.75
3499 4555 3.756963 AGGCCTGACCGAGATTTAAAAAC 59.243 43.478 3.11 0.00 46.52 2.43
3513 4569 8.828688 AGATTTAAAAACTCAGCTAGTACGTT 57.171 30.769 0.00 0.00 37.50 3.99
3514 4570 9.918630 AGATTTAAAAACTCAGCTAGTACGTTA 57.081 29.630 0.00 0.00 37.50 3.18
3515 4571 9.949377 GATTTAAAAACTCAGCTAGTACGTTAC 57.051 33.333 0.00 0.00 37.50 2.50
3518 4574 3.736530 ACTCAGCTAGTACGTTACGTG 57.263 47.619 21.22 4.56 41.39 4.49
3541 4597 0.855349 CGATTAGTGGCTTAGCTGCG 59.145 55.000 3.59 0.00 0.00 5.18
3606 4665 0.721154 TTGCGTAGAAGCGATGCAAG 59.279 50.000 0.00 0.00 42.43 4.01
3613 4672 4.319046 CGTAGAAGCGATGCAAGCATATTT 60.319 41.667 17.86 3.02 36.70 1.40
3619 4678 2.476821 GATGCAAGCATATTTGGTGCC 58.523 47.619 7.64 0.00 43.50 5.01
3621 4680 0.528249 GCAAGCATATTTGGTGCCGG 60.528 55.000 0.00 0.00 43.50 6.13
3651 4710 1.330829 GCTTAATTAGCCAGTGCGGAC 59.669 52.381 0.00 0.00 44.48 4.79
3660 4719 1.667830 CAGTGCGGACGTTGATGGT 60.668 57.895 0.00 0.00 0.00 3.55
3664 4723 2.100631 GCGGACGTTGATGGTGGAG 61.101 63.158 0.00 0.00 0.00 3.86
3665 4724 1.589630 CGGACGTTGATGGTGGAGA 59.410 57.895 0.00 0.00 0.00 3.71
3666 4725 0.175760 CGGACGTTGATGGTGGAGAT 59.824 55.000 0.00 0.00 0.00 2.75
3673 4732 6.127730 GGACGTTGATGGTGGAGATTTTAATT 60.128 38.462 0.00 0.00 0.00 1.40
3676 4735 6.350110 CGTTGATGGTGGAGATTTTAATTGGT 60.350 38.462 0.00 0.00 0.00 3.67
3685 4744 9.143631 GTGGAGATTTTAATTGGTTTCTGAATG 57.856 33.333 0.00 0.00 0.00 2.67
3835 4894 1.812235 AATCACTGATGTTCGCTGCA 58.188 45.000 0.00 0.00 0.00 4.41
3836 4895 1.812235 ATCACTGATGTTCGCTGCAA 58.188 45.000 0.00 0.00 0.00 4.08
3857 4916 6.183360 TGCAAATATCGTGCTGATGTGTTATT 60.183 34.615 11.44 0.00 42.69 1.40
3860 4919 1.737236 TCGTGCTGATGTGTTATTGGC 59.263 47.619 0.00 0.00 0.00 4.52
3993 5052 0.580578 GCAGCAGCAGTACATGATCG 59.419 55.000 0.00 0.00 41.58 3.69
4222 5316 7.761409 TGTCCTATAATCTCACATTTGCAAAC 58.239 34.615 15.41 0.00 0.00 2.93
4261 5360 1.073763 ACATTGCAGGCTTCCAGTACA 59.926 47.619 0.00 0.00 0.00 2.90
4289 5388 0.323178 ATGTGGGCCTTCTCTGCAAG 60.323 55.000 4.53 0.00 0.00 4.01
4303 5402 5.559770 TCTCTGCAAGTATGAAATGGAACA 58.440 37.500 0.00 0.00 38.02 3.18
4430 5878 1.783284 GCTTACTTTGCCAGCCAAAC 58.217 50.000 0.00 0.00 38.46 2.93
4434 5882 4.500716 GCTTACTTTGCCAGCCAAACTAAA 60.501 41.667 0.00 0.00 38.46 1.85
4435 5883 5.783111 CTTACTTTGCCAGCCAAACTAAAT 58.217 37.500 0.00 0.00 38.46 1.40
4437 5885 5.391312 ACTTTGCCAGCCAAACTAAATAG 57.609 39.130 0.00 0.00 38.46 1.73
4469 5917 8.617290 TTCATCATGAATGAATAGATCCACTG 57.383 34.615 0.00 0.00 46.96 3.66
4531 5979 1.519455 GAGAATCGCACGGGTCCTG 60.519 63.158 0.00 0.00 0.00 3.86
4537 5985 4.767255 GCACGGGTCCTGGCTGAG 62.767 72.222 1.89 0.00 0.00 3.35
4540 5988 1.982938 ACGGGTCCTGGCTGAGTAC 60.983 63.158 1.89 0.00 0.00 2.73
4541 5989 1.982395 CGGGTCCTGGCTGAGTACA 60.982 63.158 0.00 0.00 0.00 2.90
4542 5990 1.541310 CGGGTCCTGGCTGAGTACAA 61.541 60.000 0.00 0.00 0.00 2.41
4543 5991 0.912486 GGGTCCTGGCTGAGTACAAT 59.088 55.000 0.00 0.00 0.00 2.71
4545 5993 2.158943 GGGTCCTGGCTGAGTACAATAC 60.159 54.545 0.00 0.00 0.00 1.89
4547 5995 3.430929 GGTCCTGGCTGAGTACAATACAG 60.431 52.174 0.00 0.56 35.14 2.74
4548 5996 2.766263 TCCTGGCTGAGTACAATACAGG 59.234 50.000 13.99 13.99 39.93 4.00
4549 5997 2.766263 CCTGGCTGAGTACAATACAGGA 59.234 50.000 14.66 0.00 40.46 3.86
4550 5998 3.197766 CCTGGCTGAGTACAATACAGGAA 59.802 47.826 14.66 0.00 40.46 3.36
4551 5999 4.437239 CTGGCTGAGTACAATACAGGAAG 58.563 47.826 0.00 0.00 33.00 3.46
4552 6000 3.838317 TGGCTGAGTACAATACAGGAAGT 59.162 43.478 0.00 0.00 33.00 3.01
4559 6008 1.282157 ACAATACAGGAAGTGAGGGGC 59.718 52.381 0.00 0.00 0.00 5.80
4573 6022 2.830370 GGGCCGAGCAAGAATGGG 60.830 66.667 0.00 0.00 0.00 4.00
4574 6023 3.521796 GGCCGAGCAAGAATGGGC 61.522 66.667 0.00 0.00 43.01 5.36
4595 6044 0.317020 GTGCGTGGCAAAAGTGAGTC 60.317 55.000 0.00 0.00 41.47 3.36
4614 6063 4.567971 AGTCAGATCAACAGCTCAAAGAG 58.432 43.478 0.00 0.00 0.00 2.85
4615 6064 4.282957 AGTCAGATCAACAGCTCAAAGAGA 59.717 41.667 0.00 0.00 0.00 3.10
4617 6066 4.282957 TCAGATCAACAGCTCAAAGAGAGT 59.717 41.667 0.00 0.00 46.47 3.24
4618 6067 5.478332 TCAGATCAACAGCTCAAAGAGAGTA 59.522 40.000 0.00 0.00 46.47 2.59
4619 6068 6.015095 TCAGATCAACAGCTCAAAGAGAGTAA 60.015 38.462 0.00 0.00 46.47 2.24
4620 6069 6.310956 CAGATCAACAGCTCAAAGAGAGTAAG 59.689 42.308 0.00 0.00 46.47 2.34
4621 6070 5.791336 TCAACAGCTCAAAGAGAGTAAGA 57.209 39.130 0.00 0.00 46.47 2.10
4656 6105 4.636249 AGATAAGATGCCGATGGAAAGAC 58.364 43.478 0.00 0.00 0.00 3.01
4678 6127 2.758737 GGACGTGGAGGGGACGAT 60.759 66.667 0.00 0.00 39.21 3.73
4702 6164 3.869832 ACATGAACGATCTGATCTTGCTG 59.130 43.478 15.16 7.71 30.51 4.41
4707 6169 1.807000 CGATCTGATCTTGCTGCTGCT 60.807 52.381 17.00 0.00 40.48 4.24
4716 6178 4.194720 GCTGCTGCTGCCTCATGC 62.195 66.667 19.30 6.07 38.71 4.06
4729 6191 1.815003 CCTCATGCAAAGGTTCAGGTC 59.185 52.381 9.78 0.00 0.00 3.85
4768 6230 7.498570 AGCTTTTGAGAAAATTGCATAAACCAA 59.501 29.630 0.00 0.00 0.00 3.67
4770 6232 8.498054 TTTTGAGAAAATTGCATAAACCAACA 57.502 26.923 0.00 0.00 0.00 3.33
4771 6233 7.712264 TTGAGAAAATTGCATAAACCAACAG 57.288 32.000 0.00 0.00 0.00 3.16
4772 6234 5.695816 TGAGAAAATTGCATAAACCAACAGC 59.304 36.000 0.00 0.00 0.00 4.40
4788 6271 2.919228 ACAGCTATTGGGGTCGATTTC 58.081 47.619 0.00 0.00 0.00 2.17
4833 6316 1.299562 TGTCGCACAAAACACCACGT 61.300 50.000 0.00 0.00 0.00 4.49
4882 6365 6.971184 GCTCTAATCCATCATTTGACTTTGTG 59.029 38.462 0.00 0.00 0.00 3.33
4886 6369 4.468713 TCCATCATTTGACTTTGTGGACA 58.531 39.130 0.00 0.00 29.89 4.02
4956 6441 1.180029 AAATGCCACATCAGCAGGAC 58.820 50.000 0.00 0.00 44.90 3.85
5007 6511 8.526681 GTCAAAATTTCGAGATCAATACAATGC 58.473 33.333 0.00 0.00 0.00 3.56
5010 6514 1.786579 TCGAGATCAATACAATGCGCG 59.213 47.619 0.00 0.00 0.00 6.86
5021 6525 6.814146 TCAATACAATGCGCGTATATGGATTA 59.186 34.615 20.40 11.84 0.00 1.75
5022 6526 7.494298 TCAATACAATGCGCGTATATGGATTAT 59.506 33.333 20.40 10.05 0.00 1.28
5023 6527 5.718649 ACAATGCGCGTATATGGATTATC 57.281 39.130 10.90 0.00 0.00 1.75
5024 6528 5.419542 ACAATGCGCGTATATGGATTATCT 58.580 37.500 10.90 0.00 0.00 1.98
5026 6530 5.973651 ATGCGCGTATATGGATTATCTTG 57.026 39.130 8.29 0.00 0.00 3.02
5027 6531 4.816392 TGCGCGTATATGGATTATCTTGT 58.184 39.130 8.43 0.00 0.00 3.16
5028 6532 5.956642 TGCGCGTATATGGATTATCTTGTA 58.043 37.500 8.43 0.00 0.00 2.41
5029 6533 6.569780 TGCGCGTATATGGATTATCTTGTAT 58.430 36.000 8.43 0.00 0.00 2.29
5056 6560 0.387239 GCAAACTAGCAAAGTGGCCG 60.387 55.000 0.00 0.00 38.88 6.13
5057 6561 0.951558 CAAACTAGCAAAGTGGCCGT 59.048 50.000 0.00 0.00 38.88 5.68
5064 6569 1.861542 GCAAAGTGGCCGTGCACATA 61.862 55.000 18.64 0.00 38.19 2.29
5067 6572 4.160635 GTGGCCGTGCACATACGC 62.161 66.667 18.64 11.81 42.44 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 9.213799 GATAATTCTAAAATGAGTAGGCAGAGG 57.786 37.037 0.00 0.00 0.00 3.69
57 69 5.643379 TCCTTAAACCTGCATAGCAAAAG 57.357 39.130 0.00 0.00 38.41 2.27
62 74 3.316308 CCACATCCTTAAACCTGCATAGC 59.684 47.826 0.00 0.00 0.00 2.97
99 111 4.944962 TCTCAAATGTCGTTTAGCATGG 57.055 40.909 0.00 0.00 0.00 3.66
125 137 5.010820 GCTCTTTAGGTATACTACACCCCTG 59.989 48.000 2.25 0.00 36.67 4.45
234 249 4.808895 AGCGTGAAGATTAACAATGCGATA 59.191 37.500 0.00 0.00 0.00 2.92
237 252 3.093574 CAGCGTGAAGATTAACAATGCG 58.906 45.455 0.00 0.00 0.00 4.73
261 276 1.760613 AGAACTCACTCGTTGGAACCA 59.239 47.619 0.00 0.00 0.00 3.67
265 280 1.000163 GCAGAGAACTCACTCGTTGGA 60.000 52.381 4.64 0.00 41.25 3.53
362 381 4.821260 TGACAGTTCAACAGCACAATATGT 59.179 37.500 0.00 0.00 0.00 2.29
439 459 3.261981 AGGCCGGTAAAATAGTCACAG 57.738 47.619 1.90 0.00 0.00 3.66
501 522 0.679002 CCACCATGGCAGAGAGGTTG 60.679 60.000 13.04 0.00 30.44 3.77
647 668 3.853355 ATCAGTCCCATTGGATGAGTC 57.147 47.619 3.62 0.00 44.28 3.36
649 670 6.124316 AGATAATCAGTCCCATTGGATGAG 57.876 41.667 3.62 0.00 44.28 2.90
714 735 4.221342 CAATCACAAAAGTGACACCATCG 58.779 43.478 0.84 0.00 36.05 3.84
743 764 0.744771 GGCGGAGAATGGAAGGTGAC 60.745 60.000 0.00 0.00 0.00 3.67
757 778 4.041198 CCTACCTGGATAAAATTAGGCGGA 59.959 45.833 0.00 0.00 38.35 5.54
945 967 0.891373 TCCTCTGCCTCTCTTCAACG 59.109 55.000 0.00 0.00 0.00 4.10
953 977 1.688884 GGGAGCTTCCTCTGCCTCT 60.689 63.158 2.76 0.00 40.88 3.69
958 982 1.920325 TGGGTGGGAGCTTCCTCTG 60.920 63.158 13.68 0.00 38.21 3.35
986 1017 0.534652 CTCCATGCTGCCTCTTAGCC 60.535 60.000 0.00 0.00 40.42 3.93
989 1020 1.065926 CACACTCCATGCTGCCTCTTA 60.066 52.381 0.00 0.00 0.00 2.10
1006 1037 0.256752 CCATCATCTTCCCCTGCACA 59.743 55.000 0.00 0.00 0.00 4.57
1025 1056 1.673665 CTGCTTCCACTCCCTGTGC 60.674 63.158 0.00 0.00 44.92 4.57
1182 1213 0.043334 TGAAAGAGAGAGGGAGGGGG 59.957 60.000 0.00 0.00 0.00 5.40
1183 1214 1.836802 CTTGAAAGAGAGAGGGAGGGG 59.163 57.143 0.00 0.00 0.00 4.79
1189 1220 4.630940 GTGATCAAGCTTGAAAGAGAGAGG 59.369 45.833 31.55 0.00 41.13 3.69
1191 1222 4.240888 CGTGATCAAGCTTGAAAGAGAGA 58.759 43.478 31.55 7.97 41.13 3.10
1193 1224 2.738846 GCGTGATCAAGCTTGAAAGAGA 59.261 45.455 31.55 9.52 41.13 3.10
1198 1229 1.469703 CATGGCGTGATCAAGCTTGAA 59.530 47.619 31.55 14.87 41.13 2.69
1226 1597 4.114073 CAGAGCTAGAAGCAGAATCACTG 58.886 47.826 1.22 0.00 45.56 3.66
1231 1602 3.623906 TTGCAGAGCTAGAAGCAGAAT 57.376 42.857 1.22 0.00 45.56 2.40
1232 1603 3.529533 GATTGCAGAGCTAGAAGCAGAA 58.470 45.455 1.22 0.00 45.56 3.02
1234 1605 2.211806 GGATTGCAGAGCTAGAAGCAG 58.788 52.381 1.22 0.00 45.56 4.24
1235 1606 1.134280 GGGATTGCAGAGCTAGAAGCA 60.134 52.381 1.22 0.00 45.56 3.91
1236 1607 1.134280 TGGGATTGCAGAGCTAGAAGC 60.134 52.381 0.00 0.00 42.84 3.86
1278 1649 7.063898 TCAGAGAAGTTGAAGAAAATATGAGCG 59.936 37.037 0.00 0.00 0.00 5.03
1336 1728 2.941453 ACTACTATGGCTGTGTGACG 57.059 50.000 0.00 0.00 0.00 4.35
1346 1742 5.279056 GGGAATCGAGAGGAAACTACTATGG 60.279 48.000 0.00 0.00 44.43 2.74
1347 1743 5.536916 AGGGAATCGAGAGGAAACTACTATG 59.463 44.000 0.00 0.00 44.43 2.23
1348 1744 5.707495 AGGGAATCGAGAGGAAACTACTAT 58.293 41.667 0.00 0.00 44.43 2.12
1359 1757 3.895232 TCAGGAAAAGGGAATCGAGAG 57.105 47.619 0.00 0.00 0.00 3.20
1360 1758 3.134804 GGATCAGGAAAAGGGAATCGAGA 59.865 47.826 0.00 0.00 0.00 4.04
1369 1767 1.379642 GCAGCGGGATCAGGAAAAGG 61.380 60.000 0.00 0.00 0.00 3.11
1431 1839 2.224161 GGGACCGAGAGATTGATTCCAG 60.224 54.545 0.00 0.00 0.00 3.86
1446 1854 1.102978 GACAAATGGGAATGGGACCG 58.897 55.000 0.00 0.00 0.00 4.79
1450 1858 4.101274 TGCATATTGACAAATGGGAATGGG 59.899 41.667 0.00 0.00 0.00 4.00
1454 1862 5.067674 GCTAGTGCATATTGACAAATGGGAA 59.932 40.000 0.00 0.00 39.41 3.97
1481 1897 3.243724 CAAGGAGGGCTATAAGCTAGGT 58.756 50.000 0.00 0.00 41.99 3.08
1484 1900 3.630625 TCCAAGGAGGGCTATAAGCTA 57.369 47.619 0.00 0.00 41.99 3.32
1485 1901 2.496679 TCCAAGGAGGGCTATAAGCT 57.503 50.000 0.00 0.00 41.99 3.74
1486 1902 2.877708 GCATCCAAGGAGGGCTATAAGC 60.878 54.545 2.69 0.00 41.46 3.09
1487 1903 2.290577 GGCATCCAAGGAGGGCTATAAG 60.291 54.545 18.49 0.00 45.79 1.73
1488 1904 1.705186 GGCATCCAAGGAGGGCTATAA 59.295 52.381 18.49 0.00 45.79 0.98
1489 1905 1.362224 GGCATCCAAGGAGGGCTATA 58.638 55.000 18.49 0.00 45.79 1.31
1490 1906 2.158780 GGCATCCAAGGAGGGCTAT 58.841 57.895 18.49 0.00 45.79 2.97
1519 1935 4.942483 CAGGACACGGGTACTATATAGGAG 59.058 50.000 0.00 0.00 35.42 3.69
1520 1936 4.808665 GCAGGACACGGGTACTATATAGGA 60.809 50.000 0.00 2.17 35.42 2.94
1521 1937 3.442977 GCAGGACACGGGTACTATATAGG 59.557 52.174 0.00 0.00 35.42 2.57
1522 1938 4.077108 TGCAGGACACGGGTACTATATAG 58.923 47.826 0.00 8.27 35.42 1.31
1523 1939 4.103013 TGCAGGACACGGGTACTATATA 57.897 45.455 0.00 0.00 35.42 0.86
1524 1940 2.953453 TGCAGGACACGGGTACTATAT 58.047 47.619 0.00 0.00 35.42 0.86
1561 1977 1.302511 CAGGGGAAGGGAACACACG 60.303 63.158 0.00 0.00 0.00 4.49
1571 1987 4.101448 CAGACGGGGCAGGGGAAG 62.101 72.222 0.00 0.00 0.00 3.46
1583 1999 1.651240 CTTCAATGGGGCTGCAGACG 61.651 60.000 20.43 0.42 0.00 4.18
1605 2021 2.046283 TAAACAGTCACTCGCTCACG 57.954 50.000 0.00 0.00 42.01 4.35
1674 2090 9.035890 TCTCTCTTTCAACCTTTATGATGTCTA 57.964 33.333 0.00 0.00 0.00 2.59
1675 2091 7.911651 TCTCTCTTTCAACCTTTATGATGTCT 58.088 34.615 0.00 0.00 0.00 3.41
1676 2092 8.037758 TCTCTCTCTTTCAACCTTTATGATGTC 58.962 37.037 0.00 0.00 0.00 3.06
1677 2093 7.911651 TCTCTCTCTTTCAACCTTTATGATGT 58.088 34.615 0.00 0.00 0.00 3.06
1690 2124 2.289320 GCAGTGCCTTCTCTCTCTTTCA 60.289 50.000 2.85 0.00 0.00 2.69
1702 2136 1.547372 GGTTGATTGATGCAGTGCCTT 59.453 47.619 13.72 0.00 0.00 4.35
1782 2218 3.309961 TCTGATCTCAGCACTTGTGTC 57.690 47.619 2.21 0.00 43.46 3.67
1808 2244 1.203994 CGGAGGAACAAGGTGATACGT 59.796 52.381 0.00 0.00 0.00 3.57
1809 2245 1.475280 TCGGAGGAACAAGGTGATACG 59.525 52.381 0.00 0.00 0.00 3.06
1810 2246 2.496470 AGTCGGAGGAACAAGGTGATAC 59.504 50.000 0.00 0.00 0.00 2.24
1811 2247 2.758979 GAGTCGGAGGAACAAGGTGATA 59.241 50.000 0.00 0.00 0.00 2.15
1812 2248 1.550976 GAGTCGGAGGAACAAGGTGAT 59.449 52.381 0.00 0.00 0.00 3.06
1828 2264 4.083802 CGTTCATTTGTCCCTTTCTGAGTC 60.084 45.833 0.00 0.00 0.00 3.36
1879 2315 1.374560 ATGAGACCGTCAGACTCTCG 58.625 55.000 12.81 0.00 39.07 4.04
1928 2364 4.260294 GCTAGCTACGTACTCACTACAGTG 60.260 50.000 7.70 2.84 46.91 3.66
1942 2378 1.140589 AGTGCTGCTGCTAGCTACG 59.859 57.895 17.23 5.60 42.97 3.51
1943 2379 2.675519 CAGTGCTGCTGCTAGCTAC 58.324 57.895 17.23 8.44 42.97 3.58
1975 2411 2.432628 CGACCGACACCTTGAGGC 60.433 66.667 0.00 0.00 39.32 4.70
1976 2412 1.372997 CACGACCGACACCTTGAGG 60.373 63.158 0.00 0.00 42.17 3.86
1977 2413 0.249322 AACACGACCGACACCTTGAG 60.249 55.000 0.00 0.00 0.00 3.02
1978 2414 0.249155 GAACACGACCGACACCTTGA 60.249 55.000 0.00 0.00 0.00 3.02
1979 2415 0.249322 AGAACACGACCGACACCTTG 60.249 55.000 0.00 0.00 0.00 3.61
1980 2416 0.462789 AAGAACACGACCGACACCTT 59.537 50.000 0.00 0.00 0.00 3.50
1995 2456 1.974957 TCACCTCCGTGATTCCAAGAA 59.025 47.619 0.00 0.00 44.20 2.52
2006 2467 1.673033 CGATTTCAGCTTCACCTCCGT 60.673 52.381 0.00 0.00 0.00 4.69
2025 2486 0.443869 CCACTCGTTTTCTCATGGCG 59.556 55.000 0.00 0.00 0.00 5.69
2031 2492 0.804989 CCATGGCCACTCGTTTTCTC 59.195 55.000 8.16 0.00 0.00 2.87
2032 2493 0.400213 TCCATGGCCACTCGTTTTCT 59.600 50.000 8.16 0.00 0.00 2.52
2108 2569 6.126409 AGACACAACAAAAATCCAGTCCTAA 58.874 36.000 0.00 0.00 0.00 2.69
2111 2575 4.918810 AGACACAACAAAAATCCAGTCC 57.081 40.909 0.00 0.00 0.00 3.85
2150 2614 1.588404 CTAATGGACGCACGTGATGTC 59.412 52.381 24.79 24.79 0.00 3.06
2240 2704 4.024048 CGCTAGTACTTTGCATTAATGGGG 60.024 45.833 17.02 1.38 0.00 4.96
2261 2725 1.284297 GCAGGCATTTGTTTGACCGC 61.284 55.000 0.00 0.00 0.00 5.68
2301 2773 2.544844 ACGGAAGATAACCCAGAGGA 57.455 50.000 0.00 0.00 36.73 3.71
2370 2860 4.821589 GGGAGGGCTCGTTCTGCG 62.822 72.222 0.00 0.00 43.01 5.18
2419 2909 4.234574 TGCATACATCTAATAAGTCCGCG 58.765 43.478 0.00 0.00 0.00 6.46
2439 2929 2.476854 GGACGAATGAACAGATGCTTGC 60.477 50.000 0.00 0.00 0.00 4.01
2440 2930 2.743664 TGGACGAATGAACAGATGCTTG 59.256 45.455 0.00 0.00 0.00 4.01
2509 3011 0.032403 AAGCAACGCGTGTAGGTGTA 59.968 50.000 14.98 0.00 0.00 2.90
2510 3012 0.032403 TAAGCAACGCGTGTAGGTGT 59.968 50.000 14.98 5.75 0.00 4.16
2511 3013 0.437295 GTAAGCAACGCGTGTAGGTG 59.563 55.000 14.98 8.25 0.00 4.00
2512 3014 1.005294 CGTAAGCAACGCGTGTAGGT 61.005 55.000 14.98 9.21 46.10 3.08
2513 3015 1.700029 CGTAAGCAACGCGTGTAGG 59.300 57.895 14.98 4.07 46.10 3.18
2552 3057 3.119708 GCAATGTTTCAGATCTGACACCC 60.120 47.826 29.99 17.20 38.98 4.61
2554 3059 3.425359 CGGCAATGTTTCAGATCTGACAC 60.425 47.826 27.75 27.75 39.66 3.67
2598 3108 6.589907 GGTGAAATGTTTTTGTTTGACTGACT 59.410 34.615 0.00 0.00 0.00 3.41
2635 3153 0.250295 AAAACTGCACGCTCTGGCTA 60.250 50.000 0.00 0.00 36.09 3.93
2642 3160 1.034838 TTGGGTCAAAACTGCACGCT 61.035 50.000 0.00 0.00 0.00 5.07
2644 3162 0.453793 TGTTGGGTCAAAACTGCACG 59.546 50.000 0.00 0.00 0.00 5.34
2668 3186 2.753966 GGTGCAGCCTACATGTGCG 61.754 63.158 9.11 0.00 40.23 5.34
2677 3195 2.118679 TGTATGTATCTGGTGCAGCCT 58.881 47.619 14.36 0.50 38.35 4.58
2679 3197 4.633126 CCATATGTATGTATCTGGTGCAGC 59.367 45.833 9.47 9.47 31.82 5.25
2680 3198 6.041423 TCCATATGTATGTATCTGGTGCAG 57.959 41.667 1.24 0.00 31.82 4.41
2681 3199 6.269769 TCTTCCATATGTATGTATCTGGTGCA 59.730 38.462 1.24 0.00 31.82 4.57
2682 3200 6.701340 TCTTCCATATGTATGTATCTGGTGC 58.299 40.000 1.24 0.00 31.82 5.01
2683 3201 7.179160 TCCTCTTCCATATGTATGTATCTGGTG 59.821 40.741 1.24 0.00 31.82 4.17
2684 3202 7.248976 TCCTCTTCCATATGTATGTATCTGGT 58.751 38.462 1.24 0.00 31.82 4.00
2685 3203 7.724490 TCCTCTTCCATATGTATGTATCTGG 57.276 40.000 1.24 0.00 31.82 3.86
2686 3204 9.429359 GTTTCCTCTTCCATATGTATGTATCTG 57.571 37.037 1.24 0.00 31.82 2.90
2688 3206 7.545965 CCGTTTCCTCTTCCATATGTATGTATC 59.454 40.741 1.24 0.00 31.82 2.24
2689 3207 7.016268 ACCGTTTCCTCTTCCATATGTATGTAT 59.984 37.037 1.24 0.00 31.82 2.29
2690 3208 6.325545 ACCGTTTCCTCTTCCATATGTATGTA 59.674 38.462 1.24 0.00 31.82 2.29
2691 3209 5.130477 ACCGTTTCCTCTTCCATATGTATGT 59.870 40.000 1.24 0.00 31.82 2.29
2692 3210 5.611374 ACCGTTTCCTCTTCCATATGTATG 58.389 41.667 1.24 0.00 0.00 2.39
2700 3218 7.169591 TGATTAAAATACCGTTTCCTCTTCCA 58.830 34.615 0.00 0.00 0.00 3.53
2701 3219 7.551617 TCTGATTAAAATACCGTTTCCTCTTCC 59.448 37.037 0.00 0.00 0.00 3.46
2703 3221 8.857694 TTCTGATTAAAATACCGTTTCCTCTT 57.142 30.769 0.00 0.00 0.00 2.85
2724 3242 3.609373 CGTGCCAAGCATTTTGTATTCTG 59.391 43.478 0.00 0.00 41.91 3.02
2738 3256 3.121030 CTCTTCGCCCGTGCCAAG 61.121 66.667 0.00 0.00 37.08 3.61
2742 3260 2.558554 TAAGAGCTCTTCGCCCGTGC 62.559 60.000 31.67 0.00 40.39 5.34
2743 3261 0.802607 GTAAGAGCTCTTCGCCCGTG 60.803 60.000 31.67 0.00 40.39 4.94
2744 3262 0.966370 AGTAAGAGCTCTTCGCCCGT 60.966 55.000 31.67 9.71 40.39 5.28
2745 3263 1.022735 TAGTAAGAGCTCTTCGCCCG 58.977 55.000 31.67 0.00 40.39 6.13
2746 3264 3.737032 ATTAGTAAGAGCTCTTCGCCC 57.263 47.619 31.67 17.54 40.39 6.13
2749 3267 6.697892 CCTAACCAATTAGTAAGAGCTCTTCG 59.302 42.308 31.67 12.37 36.77 3.79
2750 3268 7.557724 ACCTAACCAATTAGTAAGAGCTCTTC 58.442 38.462 31.67 21.65 36.77 2.87
2762 3345 7.122650 ACATTGTCATCCAACCTAACCAATTAG 59.877 37.037 0.00 0.00 35.44 1.73
2764 3347 5.779771 ACATTGTCATCCAACCTAACCAATT 59.220 36.000 0.00 0.00 35.44 2.32
2765 3348 5.185635 CACATTGTCATCCAACCTAACCAAT 59.814 40.000 0.00 0.00 35.44 3.16
2766 3349 4.522405 CACATTGTCATCCAACCTAACCAA 59.478 41.667 0.00 0.00 35.44 3.67
2768 3351 3.119495 GCACATTGTCATCCAACCTAACC 60.119 47.826 0.00 0.00 35.44 2.85
2769 3352 3.119495 GGCACATTGTCATCCAACCTAAC 60.119 47.826 0.00 0.00 35.44 2.34
2782 3365 0.383949 GTGTTGAACGGGCACATTGT 59.616 50.000 0.00 0.00 33.70 2.71
2792 3375 1.264020 CCCATGTGTCAGTGTTGAACG 59.736 52.381 0.00 0.00 34.49 3.95
2796 3379 1.814394 CCATCCCATGTGTCAGTGTTG 59.186 52.381 0.00 0.00 0.00 3.33
2801 3384 0.107017 GTCCCCATCCCATGTGTCAG 60.107 60.000 0.00 0.00 0.00 3.51
2803 3386 1.153168 CGTCCCCATCCCATGTGTC 60.153 63.158 0.00 0.00 0.00 3.67
2839 3427 2.356069 TGCGTCTTTGTTGTACATGCAA 59.644 40.909 0.00 2.74 0.00 4.08
2848 3436 4.143200 ACACGTATATGTGCGTCTTTGTTG 60.143 41.667 22.36 0.00 44.95 3.33
2851 3439 4.796830 ACTACACGTATATGTGCGTCTTTG 59.203 41.667 22.36 8.32 44.95 2.77
2858 3446 4.866921 TCCATGACTACACGTATATGTGC 58.133 43.478 22.36 8.80 43.74 4.57
2894 3482 4.878397 GTGCTGGCTAGAGACATAAAACAT 59.122 41.667 0.00 0.00 29.25 2.71
2895 3483 4.253685 GTGCTGGCTAGAGACATAAAACA 58.746 43.478 0.00 0.00 29.25 2.83
2896 3484 3.307242 CGTGCTGGCTAGAGACATAAAAC 59.693 47.826 0.00 0.00 29.25 2.43
2898 3486 2.738643 GCGTGCTGGCTAGAGACATAAA 60.739 50.000 0.00 0.00 29.25 1.40
2899 3487 1.202417 GCGTGCTGGCTAGAGACATAA 60.202 52.381 0.00 0.00 29.25 1.90
2956 3554 6.459670 AACATCCTAACGGTTTGAGTTTTT 57.540 33.333 0.00 0.00 33.42 1.94
2961 3559 6.370442 TGACATTAACATCCTAACGGTTTGAG 59.630 38.462 0.00 0.00 0.00 3.02
2963 3564 6.489127 TGACATTAACATCCTAACGGTTTG 57.511 37.500 0.00 0.00 0.00 2.93
2980 3581 8.691661 ACCAGTTAAAACACTAAGATGACATT 57.308 30.769 0.00 0.00 0.00 2.71
2981 3582 8.691661 AACCAGTTAAAACACTAAGATGACAT 57.308 30.769 0.00 0.00 0.00 3.06
2993 3594 4.153835 CCGCCGTAATAACCAGTTAAAACA 59.846 41.667 0.00 0.00 0.00 2.83
3000 3601 0.741927 GTGCCGCCGTAATAACCAGT 60.742 55.000 0.00 0.00 0.00 4.00
3001 3602 1.433837 GGTGCCGCCGTAATAACCAG 61.434 60.000 0.00 0.00 0.00 4.00
3002 3603 1.449956 GGTGCCGCCGTAATAACCA 60.450 57.895 0.00 0.00 0.00 3.67
3003 3604 2.182181 GGGTGCCGCCGTAATAACC 61.182 63.158 0.00 0.00 38.44 2.85
3026 3631 1.135170 GTGGTGCCTCTCGTACCTTAC 60.135 57.143 0.00 0.00 46.85 2.34
3074 3679 4.753516 ACCTTACATGCATAGTGCTGTA 57.246 40.909 0.00 0.00 45.31 2.74
3075 3680 3.634397 ACCTTACATGCATAGTGCTGT 57.366 42.857 0.00 0.00 45.31 4.40
3080 3686 4.844349 AGGACAACCTTACATGCATAGT 57.156 40.909 0.00 2.80 45.36 2.12
3114 4166 3.748048 GCTTGTGATACGCATGATACCAT 59.252 43.478 0.00 0.00 0.00 3.55
3115 4167 3.130633 GCTTGTGATACGCATGATACCA 58.869 45.455 0.00 0.00 0.00 3.25
3116 4168 2.155732 CGCTTGTGATACGCATGATACC 59.844 50.000 0.00 0.00 0.00 2.73
3206 4258 1.040646 AGGAGCACTTGTTCGTCTCA 58.959 50.000 0.00 0.00 0.00 3.27
3209 4261 1.569479 GCCAGGAGCACTTGTTCGTC 61.569 60.000 0.00 0.00 42.97 4.20
3260 4312 2.038975 TCCCTCCCTCGTTCTGGG 59.961 66.667 0.00 0.00 45.90 4.45
3274 4326 3.573967 TGCCACTTGAAAATTTCTCTCCC 59.426 43.478 7.29 0.00 0.00 4.30
3275 4327 4.853924 TGCCACTTGAAAATTTCTCTCC 57.146 40.909 7.29 0.00 0.00 3.71
3276 4328 5.689068 CACTTGCCACTTGAAAATTTCTCTC 59.311 40.000 7.29 0.00 0.00 3.20
3277 4329 5.452356 CCACTTGCCACTTGAAAATTTCTCT 60.452 40.000 7.29 0.00 0.00 3.10
3278 4330 4.746611 CCACTTGCCACTTGAAAATTTCTC 59.253 41.667 7.29 0.00 0.00 2.87
3283 4335 3.030291 TGACCACTTGCCACTTGAAAAT 58.970 40.909 0.00 0.00 0.00 1.82
3318 4370 2.981302 CATGCGTCCCTCTCACCA 59.019 61.111 0.00 0.00 0.00 4.17
3377 4429 2.125106 CAACCTGGCCCGCTCTAC 60.125 66.667 0.00 0.00 0.00 2.59
3417 4470 5.163343 TGTGGATGGTTAGCTAATGGTACTC 60.163 44.000 9.88 1.62 0.00 2.59
3423 4476 7.068103 TGGTTAATTGTGGATGGTTAGCTAATG 59.932 37.037 9.88 0.00 0.00 1.90
3425 4478 6.376018 GTGGTTAATTGTGGATGGTTAGCTAA 59.624 38.462 0.86 0.86 0.00 3.09
3460 4515 4.276926 CAGGCCTTGACTTGATTATTAGCC 59.723 45.833 0.00 0.00 36.92 3.93
3483 4538 5.864628 AGCTGAGTTTTTAAATCTCGGTC 57.135 39.130 19.60 14.08 37.06 4.79
3487 4542 8.463456 ACGTACTAGCTGAGTTTTTAAATCTC 57.537 34.615 8.39 8.39 39.81 2.75
3491 4546 7.647715 ACGTAACGTACTAGCTGAGTTTTTAAA 59.352 33.333 0.00 0.00 38.73 1.52
3499 4555 2.159612 TGCACGTAACGTACTAGCTGAG 60.160 50.000 0.00 0.00 38.32 3.35
3513 4569 1.407618 AGCCACTAATCGATGCACGTA 59.592 47.619 0.00 0.00 43.13 3.57
3514 4570 0.175760 AGCCACTAATCGATGCACGT 59.824 50.000 0.00 0.00 43.13 4.49
3515 4571 1.290203 AAGCCACTAATCGATGCACG 58.710 50.000 0.00 0.00 44.09 5.34
3518 4574 2.478134 CAGCTAAGCCACTAATCGATGC 59.522 50.000 0.00 0.00 0.00 3.91
3541 4597 6.293081 CCAGCTAGTATATGTCAACACATTGC 60.293 42.308 0.00 0.00 40.66 3.56
3606 4665 0.179113 CAACCCGGCACCAAATATGC 60.179 55.000 0.00 0.00 42.62 3.14
3613 4672 1.378382 CATCATCAACCCGGCACCA 60.378 57.895 0.00 0.00 0.00 4.17
3651 4710 6.035843 CCAATTAAAATCTCCACCATCAACG 58.964 40.000 0.00 0.00 0.00 4.10
3660 4719 7.818930 GCATTCAGAAACCAATTAAAATCTCCA 59.181 33.333 0.00 0.00 0.00 3.86
3666 4725 8.881743 GCATATGCATTCAGAAACCAATTAAAA 58.118 29.630 22.84 0.00 41.59 1.52
3673 4732 4.642445 CAGCATATGCATTCAGAAACCA 57.358 40.909 28.62 0.00 45.16 3.67
3835 4894 6.728200 CCAATAACACATCAGCACGATATTT 58.272 36.000 0.00 0.00 31.20 1.40
3836 4895 5.277974 GCCAATAACACATCAGCACGATATT 60.278 40.000 0.00 0.00 31.20 1.28
3857 4916 1.749063 AGACGAGATCAATACACGCCA 59.251 47.619 0.00 0.00 0.00 5.69
3860 4919 4.210832 TGCTAGACGAGATCAATACACG 57.789 45.455 0.00 0.00 0.00 4.49
3993 5052 2.045536 CACCTTCTCCAGCCCAGC 60.046 66.667 0.00 0.00 0.00 4.85
4015 5074 3.490759 CGCCCACGTTAGCAGCAG 61.491 66.667 7.30 0.00 33.53 4.24
4142 5236 4.080975 ACCAGCAAACATTATTTCCATGGG 60.081 41.667 13.02 0.00 0.00 4.00
4158 5252 1.899814 CCACTACCACTCTACCAGCAA 59.100 52.381 0.00 0.00 0.00 3.91
4261 5360 5.047092 CAGAGAAGGCCCACATACAAAAATT 60.047 40.000 0.00 0.00 0.00 1.82
4289 5388 9.956720 CTTAATCCTCATTGTTCCATTTCATAC 57.043 33.333 0.00 0.00 0.00 2.39
4303 5402 6.205101 ACGACGTCTAACTTAATCCTCATT 57.795 37.500 14.70 0.00 0.00 2.57
4468 5916 4.988540 CAGGTTTACTTTCGACATGAGACA 59.011 41.667 0.00 0.00 0.00 3.41
4469 5917 4.389077 CCAGGTTTACTTTCGACATGAGAC 59.611 45.833 0.00 0.00 0.00 3.36
4531 5979 4.081642 TCACTTCCTGTATTGTACTCAGCC 60.082 45.833 0.00 0.00 0.00 4.85
4535 5983 4.141914 CCCCTCACTTCCTGTATTGTACTC 60.142 50.000 0.00 0.00 0.00 2.59
4537 5985 3.681874 GCCCCTCACTTCCTGTATTGTAC 60.682 52.174 0.00 0.00 0.00 2.90
4540 5988 1.408822 GGCCCCTCACTTCCTGTATTG 60.409 57.143 0.00 0.00 0.00 1.90
4541 5989 0.919710 GGCCCCTCACTTCCTGTATT 59.080 55.000 0.00 0.00 0.00 1.89
4542 5990 1.338136 CGGCCCCTCACTTCCTGTAT 61.338 60.000 0.00 0.00 0.00 2.29
4543 5991 1.987855 CGGCCCCTCACTTCCTGTA 60.988 63.158 0.00 0.00 0.00 2.74
4545 5993 3.003173 TCGGCCCCTCACTTCCTG 61.003 66.667 0.00 0.00 0.00 3.86
4547 5995 4.475135 GCTCGGCCCCTCACTTCC 62.475 72.222 0.00 0.00 0.00 3.46
4548 5996 3.254024 TTGCTCGGCCCCTCACTTC 62.254 63.158 0.00 0.00 0.00 3.01
4549 5997 3.249189 TTGCTCGGCCCCTCACTT 61.249 61.111 0.00 0.00 0.00 3.16
4550 5998 3.710722 CTTGCTCGGCCCCTCACT 61.711 66.667 0.00 0.00 0.00 3.41
4551 5999 2.543067 ATTCTTGCTCGGCCCCTCAC 62.543 60.000 0.00 0.00 0.00 3.51
4552 6000 2.300967 ATTCTTGCTCGGCCCCTCA 61.301 57.895 0.00 0.00 0.00 3.86
4559 6008 3.204827 CCGCCCATTCTTGCTCGG 61.205 66.667 0.00 0.00 32.57 4.63
4573 6022 4.264638 ACTTTTGCCACGCACCGC 62.265 61.111 0.00 0.00 38.71 5.68
4574 6023 2.353376 CACTTTTGCCACGCACCG 60.353 61.111 0.00 0.00 38.71 4.94
4595 6044 4.567971 ACTCTCTTTGAGCTGTTGATCTG 58.432 43.478 0.00 0.00 46.41 2.90
4618 6067 8.945057 GCATCTTATCTTTTCTTCTTGTCTCTT 58.055 33.333 0.00 0.00 0.00 2.85
4619 6068 7.552330 GGCATCTTATCTTTTCTTCTTGTCTCT 59.448 37.037 0.00 0.00 0.00 3.10
4620 6069 7.465245 CGGCATCTTATCTTTTCTTCTTGTCTC 60.465 40.741 0.00 0.00 0.00 3.36
4621 6070 6.314896 CGGCATCTTATCTTTTCTTCTTGTCT 59.685 38.462 0.00 0.00 0.00 3.41
4678 6127 3.867493 GCAAGATCAGATCGTTCATGTGA 59.133 43.478 4.67 0.00 39.07 3.58
4716 6178 7.770433 TCTCAACATATATGACCTGAACCTTTG 59.230 37.037 19.63 8.93 0.00 2.77
4720 6182 5.698545 GCTCTCAACATATATGACCTGAACC 59.301 44.000 19.63 6.32 0.00 3.62
4768 6230 2.741878 CGAAATCGACCCCAATAGCTGT 60.742 50.000 0.00 0.00 43.02 4.40
4770 6232 1.810412 GCGAAATCGACCCCAATAGCT 60.810 52.381 7.06 0.00 43.02 3.32
4771 6233 0.586802 GCGAAATCGACCCCAATAGC 59.413 55.000 7.06 0.00 43.02 2.97
4772 6234 1.948104 TGCGAAATCGACCCCAATAG 58.052 50.000 7.06 0.00 43.02 1.73
4778 6261 1.521423 CGTTCTATGCGAAATCGACCC 59.479 52.381 7.06 0.00 43.02 4.46
4788 6271 2.927477 TGAAAAGTAGGCGTTCTATGCG 59.073 45.455 0.00 0.00 0.00 4.73
4833 6316 5.019470 TGGTTGCAATGGATTACACCAATA 58.981 37.500 0.59 0.00 43.47 1.90
4882 6365 1.747355 CAGCTGTTGGGAATCATGTCC 59.253 52.381 5.25 0.00 36.90 4.02
4992 6496 4.910746 ATACGCGCATTGTATTGATCTC 57.089 40.909 5.73 0.00 0.00 2.75
4996 6500 4.561105 TCCATATACGCGCATTGTATTGA 58.439 39.130 5.73 0.48 34.51 2.57
4999 6503 7.210174 AGATAATCCATATACGCGCATTGTAT 58.790 34.615 5.73 9.91 36.53 2.29
5056 6560 2.202824 TAGCCCGCGTATGTGCAC 60.203 61.111 10.75 10.75 34.15 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.