Multiple sequence alignment - TraesCS3A01G440300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G440300 chr3A 100.000 4644 0 0 1 4644 683211036 683215679 0.000000e+00 8576.0
1 TraesCS3A01G440300 chr3A 96.507 687 22 1 1 685 691720759 691720073 0.000000e+00 1134.0
2 TraesCS3A01G440300 chr3A 96.989 465 14 0 2205 2669 700884842 700884378 0.000000e+00 782.0
3 TraesCS3A01G440300 chr3B 91.045 1340 97 14 3319 4644 723466232 723467562 0.000000e+00 1788.0
4 TraesCS3A01G440300 chr3B 92.500 1200 79 6 3455 4644 723459509 723460707 0.000000e+00 1707.0
5 TraesCS3A01G440300 chr3B 90.168 1312 90 15 706 2012 723456409 723457686 0.000000e+00 1672.0
6 TraesCS3A01G440300 chr3B 87.634 655 66 8 2672 3313 723457999 723458651 0.000000e+00 747.0
7 TraesCS3A01G440300 chr3B 80.057 1048 161 26 874 1889 723463477 723464508 0.000000e+00 734.0
8 TraesCS3A01G440300 chr3B 97.143 175 5 0 2030 2204 723457833 723458007 3.510000e-76 296.0
9 TraesCS3A01G440300 chr3B 78.801 467 78 12 2857 3313 723464972 723465427 1.260000e-75 294.0
10 TraesCS3A01G440300 chr3D 90.231 1341 106 16 3319 4644 546387985 546389315 0.000000e+00 1727.0
11 TraesCS3A01G440300 chr3D 79.982 1109 171 29 815 1889 546385166 546386257 0.000000e+00 771.0
12 TraesCS3A01G440300 chr3D 95.426 481 22 0 2190 2670 578449754 578450234 0.000000e+00 767.0
13 TraesCS3A01G440300 chr3D 78.801 467 78 12 2857 3313 546386737 546387192 1.260000e-75 294.0
14 TraesCS3A01G440300 chr2A 90.800 913 78 4 3733 4644 619771360 619770453 0.000000e+00 1216.0
15 TraesCS3A01G440300 chr2A 96.642 685 22 1 1 685 90531394 90532077 0.000000e+00 1136.0
16 TraesCS3A01G440300 chr2A 96.491 684 22 1 1 684 90538546 90539227 0.000000e+00 1129.0
17 TraesCS3A01G440300 chr2A 97.863 468 10 0 2202 2669 5314328 5314795 0.000000e+00 809.0
18 TraesCS3A01G440300 chr2A 96.802 469 14 1 2206 2674 685199601 685200068 0.000000e+00 782.0
19 TraesCS3A01G440300 chr1A 96.812 690 19 1 1 690 63077150 63077836 0.000000e+00 1149.0
20 TraesCS3A01G440300 chr1A 96.350 685 24 1 1 685 62718494 62719177 0.000000e+00 1125.0
21 TraesCS3A01G440300 chr1A 96.559 465 16 0 2205 2669 302910260 302910724 0.000000e+00 771.0
22 TraesCS3A01G440300 chr6A 96.637 684 23 0 1 684 28504264 28504947 0.000000e+00 1136.0
23 TraesCS3A01G440300 chr4A 96.491 684 23 1 1 684 137490531 137491213 0.000000e+00 1129.0
24 TraesCS3A01G440300 chr4A 95.954 692 25 2 1 692 100822022 100821334 0.000000e+00 1120.0
25 TraesCS3A01G440300 chr4A 97.419 465 12 0 2205 2669 636048322 636048786 0.000000e+00 793.0
26 TraesCS3A01G440300 chr1D 96.496 685 21 2 1 685 92977537 92976856 0.000000e+00 1129.0
27 TraesCS3A01G440300 chr2B 85.514 925 117 6 3733 4644 786104803 786105723 0.000000e+00 950.0
28 TraesCS3A01G440300 chr2B 100.000 28 0 0 2773 2800 19843207 19843180 8.000000e-03 52.8
29 TraesCS3A01G440300 chr7A 96.842 475 11 3 2195 2669 28261039 28261509 0.000000e+00 791.0
30 TraesCS3A01G440300 chr7A 97.204 465 13 0 2205 2669 49508653 49508189 0.000000e+00 787.0
31 TraesCS3A01G440300 chr7A 94.705 491 19 4 2185 2669 94397775 94397286 0.000000e+00 756.0
32 TraesCS3A01G440300 chr2D 81.441 916 156 12 3734 4644 477425627 477424721 0.000000e+00 737.0
33 TraesCS3A01G440300 chr5B 84.094 635 86 4 4021 4643 7069299 7068668 2.390000e-167 599.0
34 TraesCS3A01G440300 chr5A 100.000 29 0 0 2768 2796 535614154 535614182 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G440300 chr3A 683211036 683215679 4643 False 8576.000000 8576 100.000000 1 4644 1 chr3A.!!$F1 4643
1 TraesCS3A01G440300 chr3A 691720073 691720759 686 True 1134.000000 1134 96.507000 1 685 1 chr3A.!!$R1 684
2 TraesCS3A01G440300 chr3B 723456409 723467562 11153 False 1034.000000 1788 88.192571 706 4644 7 chr3B.!!$F1 3938
3 TraesCS3A01G440300 chr3D 546385166 546389315 4149 False 930.666667 1727 83.004667 815 4644 3 chr3D.!!$F2 3829
4 TraesCS3A01G440300 chr2A 619770453 619771360 907 True 1216.000000 1216 90.800000 3733 4644 1 chr2A.!!$R1 911
5 TraesCS3A01G440300 chr2A 90531394 90532077 683 False 1136.000000 1136 96.642000 1 685 1 chr2A.!!$F2 684
6 TraesCS3A01G440300 chr2A 90538546 90539227 681 False 1129.000000 1129 96.491000 1 684 1 chr2A.!!$F3 683
7 TraesCS3A01G440300 chr1A 63077150 63077836 686 False 1149.000000 1149 96.812000 1 690 1 chr1A.!!$F2 689
8 TraesCS3A01G440300 chr1A 62718494 62719177 683 False 1125.000000 1125 96.350000 1 685 1 chr1A.!!$F1 684
9 TraesCS3A01G440300 chr6A 28504264 28504947 683 False 1136.000000 1136 96.637000 1 684 1 chr6A.!!$F1 683
10 TraesCS3A01G440300 chr4A 137490531 137491213 682 False 1129.000000 1129 96.491000 1 684 1 chr4A.!!$F1 683
11 TraesCS3A01G440300 chr4A 100821334 100822022 688 True 1120.000000 1120 95.954000 1 692 1 chr4A.!!$R1 691
12 TraesCS3A01G440300 chr1D 92976856 92977537 681 True 1129.000000 1129 96.496000 1 685 1 chr1D.!!$R1 684
13 TraesCS3A01G440300 chr2B 786104803 786105723 920 False 950.000000 950 85.514000 3733 4644 1 chr2B.!!$F1 911
14 TraesCS3A01G440300 chr2D 477424721 477425627 906 True 737.000000 737 81.441000 3734 4644 1 chr2D.!!$R1 910
15 TraesCS3A01G440300 chr5B 7068668 7069299 631 True 599.000000 599 84.094000 4021 4643 1 chr5B.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 913 0.034186 TGAGACCCAACATGCATCCC 60.034 55.0 0.00 0.00 0.00 3.85 F
1320 1338 0.027586 CGACGAAAATGATTCCCGGC 59.972 55.0 0.00 0.71 0.00 6.13 F
2271 2459 0.037303 TCCTCCAGCCTTGCTTTGAG 59.963 55.0 5.73 5.73 36.40 3.02 F
3093 3323 0.245266 TGCAAGTTCGCGAGGTATCA 59.755 50.0 9.59 3.55 33.35 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2440 0.037303 CTCAAAGCAAGGCTGGAGGA 59.963 55.0 0.0 0.0 39.62 3.71 R
3093 3323 0.032813 CCATGAAATCACCTGGCCCT 60.033 55.0 0.0 0.0 0.00 5.19 R
3150 3380 0.109532 TCACCACGCCTGATTTTCCA 59.890 50.0 0.0 0.0 0.00 3.53 R
4094 11909 0.523966 CGATAGGATGGAGACCTCGC 59.476 60.0 0.0 0.0 38.76 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 2.037902 TCATTGTGGTGTAAAGCTCCGA 59.962 45.455 0.00 0.00 33.61 4.55
138 139 3.245122 GGGTCTCCAATTAGGTTGTGGAA 60.245 47.826 0.00 0.00 40.87 3.53
142 143 5.946377 GTCTCCAATTAGGTTGTGGAAATCT 59.054 40.000 0.00 0.00 40.87 2.40
237 238 0.475044 AGGGTTGCCTTTTGTACGGA 59.525 50.000 0.00 0.00 0.00 4.69
544 545 4.380867 GCTTAGCATAAGTTGTTGGTGCAT 60.381 41.667 0.00 0.00 38.23 3.96
553 554 4.917385 AGTTGTTGGTGCATATAGGTGAA 58.083 39.130 0.00 0.00 0.00 3.18
581 582 5.047660 AGTTGTTGTAGGTTTTGTGCTTGAA 60.048 36.000 0.00 0.00 0.00 2.69
606 607 7.797038 AAATTAACCGCTAGATTTATTCCGT 57.203 32.000 0.00 0.00 0.00 4.69
686 690 3.745975 GTGACATCCACGATCTTTCAACA 59.254 43.478 0.00 0.00 35.86 3.33
690 694 2.083774 TCCACGATCTTTCAACATGGC 58.916 47.619 0.00 0.00 0.00 4.40
691 695 2.086869 CCACGATCTTTCAACATGGCT 58.913 47.619 0.00 0.00 0.00 4.75
692 696 2.096496 CCACGATCTTTCAACATGGCTC 59.904 50.000 0.00 0.00 0.00 4.70
693 697 2.743664 CACGATCTTTCAACATGGCTCA 59.256 45.455 0.00 0.00 0.00 4.26
694 698 3.376234 CACGATCTTTCAACATGGCTCAT 59.624 43.478 0.00 0.00 0.00 2.90
695 699 4.571984 CACGATCTTTCAACATGGCTCATA 59.428 41.667 0.00 0.00 0.00 2.15
696 700 5.065090 CACGATCTTTCAACATGGCTCATAA 59.935 40.000 0.00 0.00 0.00 1.90
697 701 5.647658 ACGATCTTTCAACATGGCTCATAAA 59.352 36.000 0.00 0.00 0.00 1.40
698 702 5.967674 CGATCTTTCAACATGGCTCATAAAC 59.032 40.000 0.00 0.00 0.00 2.01
699 703 6.183360 CGATCTTTCAACATGGCTCATAAACT 60.183 38.462 0.00 0.00 0.00 2.66
700 704 7.011389 CGATCTTTCAACATGGCTCATAAACTA 59.989 37.037 0.00 0.00 0.00 2.24
701 705 7.615582 TCTTTCAACATGGCTCATAAACTAG 57.384 36.000 0.00 0.00 0.00 2.57
702 706 5.818136 TTCAACATGGCTCATAAACTAGC 57.182 39.130 0.00 0.00 38.03 3.42
703 707 4.842574 TCAACATGGCTCATAAACTAGCA 58.157 39.130 0.00 0.00 40.61 3.49
704 708 5.439721 TCAACATGGCTCATAAACTAGCAT 58.560 37.500 0.00 0.00 40.61 3.79
705 709 6.591001 TCAACATGGCTCATAAACTAGCATA 58.409 36.000 0.00 0.00 40.61 3.14
706 710 6.707608 TCAACATGGCTCATAAACTAGCATAG 59.292 38.462 0.00 0.00 46.50 2.23
707 711 6.425210 ACATGGCTCATAAACTAGCATAGA 57.575 37.500 0.00 0.00 42.77 1.98
718 722 4.445699 GCATAGAGCCAACCCGAG 57.554 61.111 0.00 0.00 37.23 4.63
747 751 9.850628 GTACATGTCTACAACTAGTCAACAATA 57.149 33.333 0.00 0.00 31.19 1.90
758 762 3.926616 AGTCAACAATAGTGTCCCTTCG 58.073 45.455 0.00 0.00 36.80 3.79
766 770 2.522436 TGTCCCTTCGTCCACGGT 60.522 61.111 0.00 0.00 40.29 4.83
787 791 2.162608 TCCACAAGTTTGTTTCCACGTG 59.837 45.455 9.08 9.08 39.91 4.49
790 794 2.814919 ACAAGTTTGTTTCCACGTGTGA 59.185 40.909 15.65 8.70 38.47 3.58
791 795 3.119990 ACAAGTTTGTTTCCACGTGTGAG 60.120 43.478 15.65 0.00 38.47 3.51
792 796 2.706890 AGTTTGTTTCCACGTGTGAGT 58.293 42.857 15.65 0.00 0.00 3.41
793 797 2.676342 AGTTTGTTTCCACGTGTGAGTC 59.324 45.455 15.65 8.64 0.00 3.36
794 798 2.676342 GTTTGTTTCCACGTGTGAGTCT 59.324 45.455 15.65 0.00 0.00 3.24
795 799 3.804786 TTGTTTCCACGTGTGAGTCTA 57.195 42.857 15.65 3.51 0.00 2.59
796 800 4.330944 TTGTTTCCACGTGTGAGTCTAT 57.669 40.909 15.65 0.00 0.00 1.98
797 801 4.330944 TGTTTCCACGTGTGAGTCTATT 57.669 40.909 15.65 0.00 0.00 1.73
798 802 4.304110 TGTTTCCACGTGTGAGTCTATTC 58.696 43.478 15.65 0.00 0.00 1.75
799 803 4.202172 TGTTTCCACGTGTGAGTCTATTCA 60.202 41.667 15.65 0.00 0.00 2.57
832 836 1.694150 TGGTGTCTCTTCTTCCACAGG 59.306 52.381 0.00 0.00 0.00 4.00
882 889 5.584253 TCAATCCTTCTGCTACTAGTCAC 57.416 43.478 0.00 0.00 0.00 3.67
884 891 5.126222 TCAATCCTTCTGCTACTAGTCACTG 59.874 44.000 0.00 0.00 0.00 3.66
887 894 4.013728 CCTTCTGCTACTAGTCACTGAGT 58.986 47.826 0.00 0.00 0.00 3.41
906 913 0.034186 TGAGACCCAACATGCATCCC 60.034 55.000 0.00 0.00 0.00 3.85
915 922 0.530650 ACATGCATCCCGCTAGAACG 60.531 55.000 0.00 0.00 43.06 3.95
926 933 2.398498 CGCTAGAACGCTAGATGCATT 58.602 47.619 0.00 0.00 45.71 3.56
927 934 2.406691 CGCTAGAACGCTAGATGCATTC 59.593 50.000 0.00 0.00 45.71 2.67
1024 1033 1.271054 GCAGGGCCATGGTATCACTAG 60.271 57.143 20.75 0.07 0.00 2.57
1027 1036 2.047061 GGGCCATGGTATCACTAGTCA 58.953 52.381 14.67 0.00 0.00 3.41
1041 1050 0.740868 TAGTCATGCTTGCGGTGCTC 60.741 55.000 0.00 0.00 0.00 4.26
1092 1107 3.825014 TGACTACGGCTAGAAGAAACTGT 59.175 43.478 0.00 0.00 0.00 3.55
1096 1111 1.275291 CGGCTAGAAGAAACTGTCCCA 59.725 52.381 0.00 0.00 0.00 4.37
1101 1116 3.933861 AGAAGAAACTGTCCCAACACT 57.066 42.857 0.00 0.00 0.00 3.55
1113 1128 2.025793 TCCCAACACTTGTGGTTCTGAA 60.026 45.455 5.72 0.00 0.00 3.02
1146 1161 0.317938 CGTTCGGGCTAGATCCTTCG 60.318 60.000 0.00 0.00 0.00 3.79
1189 1204 0.249447 CACCTGTGCTGTCGACAAGA 60.249 55.000 20.49 5.86 0.00 3.02
1200 1215 1.521423 GTCGACAAGAACACCAACGAG 59.479 52.381 11.55 0.00 0.00 4.18
1218 1233 1.138661 GAGAGTTCTCTCATGCTGGGG 59.861 57.143 20.69 0.00 42.66 4.96
1220 1235 1.767681 GAGTTCTCTCATGCTGGGGAT 59.232 52.381 0.00 0.00 40.18 3.85
1223 1238 1.058428 TCTCTCATGCTGGGGATGGG 61.058 60.000 0.00 0.00 0.00 4.00
1232 1247 0.032813 CTGGGGATGGGCAACTCAAT 60.033 55.000 0.00 0.00 0.00 2.57
1236 1251 1.494721 GGGATGGGCAACTCAATCCTA 59.505 52.381 0.00 0.00 39.49 2.94
1253 1268 7.741785 TCAATCCTAAAGTTGTCTCAGGTTTA 58.258 34.615 0.00 0.00 0.00 2.01
1256 1271 7.074653 TCCTAAAGTTGTCTCAGGTTTATGT 57.925 36.000 0.00 0.00 0.00 2.29
1261 1276 5.248640 AGTTGTCTCAGGTTTATGTGGATG 58.751 41.667 0.00 0.00 0.00 3.51
1267 1282 3.091545 CAGGTTTATGTGGATGCCAACT 58.908 45.455 0.00 0.00 34.18 3.16
1270 1285 3.509575 GGTTTATGTGGATGCCAACTTCA 59.490 43.478 0.00 0.00 34.18 3.02
1276 1291 1.425066 TGGATGCCAACTTCAACCTCT 59.575 47.619 0.00 0.00 0.00 3.69
1277 1292 2.642311 TGGATGCCAACTTCAACCTCTA 59.358 45.455 0.00 0.00 0.00 2.43
1279 1294 2.163818 TGCCAACTTCAACCTCTACG 57.836 50.000 0.00 0.00 0.00 3.51
1282 1300 2.547218 GCCAACTTCAACCTCTACGTGA 60.547 50.000 0.00 0.00 0.00 4.35
1289 1307 2.631062 TCAACCTCTACGTGAACACCAT 59.369 45.455 0.00 0.00 0.00 3.55
1300 1318 3.366070 CGTGAACACCATTCTCTCGTACT 60.366 47.826 0.00 0.00 0.00 2.73
1320 1338 0.027586 CGACGAAAATGATTCCCGGC 59.972 55.000 0.00 0.71 0.00 6.13
1389 1407 3.249320 CCATATCTGGCTCGTCAAACATG 59.751 47.826 0.00 0.00 35.23 3.21
1510 1528 2.540383 TCATGGAGAAGCTACCTGTGT 58.460 47.619 0.00 0.00 0.00 3.72
1523 1541 1.371337 CCTGTGTGGACATGCGATGG 61.371 60.000 0.00 0.00 38.35 3.51
1594 1612 3.257393 GCGTTCACTCTCAACATCTCAT 58.743 45.455 0.00 0.00 0.00 2.90
1601 1619 4.816925 CACTCTCAACATCTCATGCATCAT 59.183 41.667 0.00 0.00 0.00 2.45
1648 1666 3.428045 GCAAGCTTTCATCGCCTACAATT 60.428 43.478 0.00 0.00 0.00 2.32
1649 1667 4.100529 CAAGCTTTCATCGCCTACAATTG 58.899 43.478 3.24 3.24 0.00 2.32
1785 1812 2.618053 GACAACTATGCCTGCGTTAGT 58.382 47.619 0.00 0.00 0.00 2.24
1793 1820 0.882927 GCCTGCGTTAGTGACCACAA 60.883 55.000 2.78 0.00 0.00 3.33
1888 1921 1.453669 GGCTGCCCTAATCCTCCAG 59.546 63.158 7.66 0.00 0.00 3.86
1889 1922 1.228094 GCTGCCCTAATCCTCCAGC 60.228 63.158 0.00 0.00 41.57 4.85
1890 1923 1.453669 CTGCCCTAATCCTCCAGCC 59.546 63.158 0.00 0.00 0.00 4.85
1891 1924 2.388890 CTGCCCTAATCCTCCAGCCG 62.389 65.000 0.00 0.00 0.00 5.52
1892 1925 2.427753 CCCTAATCCTCCAGCCGC 59.572 66.667 0.00 0.00 0.00 6.53
1893 1926 2.143419 CCCTAATCCTCCAGCCGCT 61.143 63.158 0.00 0.00 0.00 5.52
1894 1927 1.369321 CCTAATCCTCCAGCCGCTC 59.631 63.158 0.00 0.00 0.00 5.03
1895 1928 1.369321 CTAATCCTCCAGCCGCTCC 59.631 63.158 0.00 0.00 0.00 4.70
1896 1929 1.382557 TAATCCTCCAGCCGCTCCA 60.383 57.895 0.00 0.00 0.00 3.86
1948 1983 1.248486 GAAAAGAAGTGTGCCTCCCC 58.752 55.000 0.00 0.00 0.00 4.81
1952 1987 3.927481 GAAGTGTGCCTCCCCAGCC 62.927 68.421 0.00 0.00 0.00 4.85
1956 1991 2.365635 GTGCCTCCCCAGCCTCTA 60.366 66.667 0.00 0.00 0.00 2.43
1979 2014 3.019564 GCAGCCAAAACACCTATCATCT 58.980 45.455 0.00 0.00 0.00 2.90
2001 2036 3.916035 ACTATGTGACTGGGATAGCTCA 58.084 45.455 0.00 0.00 0.00 4.26
2002 2037 4.487804 ACTATGTGACTGGGATAGCTCAT 58.512 43.478 0.00 0.00 0.00 2.90
2003 2038 5.645201 ACTATGTGACTGGGATAGCTCATA 58.355 41.667 0.00 0.00 0.00 2.15
2005 2040 7.414266 ACTATGTGACTGGGATAGCTCATATA 58.586 38.462 0.00 0.00 0.00 0.86
2008 2043 5.105187 TGTGACTGGGATAGCTCATATATGC 60.105 44.000 7.92 0.00 0.00 3.14
2021 2056 5.478233 TCATATATGCGTTGTGTTTGGTC 57.522 39.130 7.92 0.00 0.00 4.02
2023 2058 0.869068 TATGCGTTGTGTTTGGTCCG 59.131 50.000 0.00 0.00 0.00 4.79
2028 2063 1.021968 GTTGTGTTTGGTCCGAGCTT 58.978 50.000 0.00 0.00 0.00 3.74
2060 2224 8.042944 ACTAGCTAGTAGTACAACTTTCACTC 57.957 38.462 24.97 0.00 40.47 3.51
2211 2399 9.661563 TCAACGTATTTATATCCTTCACAAAGT 57.338 29.630 0.00 0.00 0.00 2.66
2222 2410 6.131544 TCCTTCACAAAGTTTCTTTGTAGC 57.868 37.500 21.83 0.00 40.30 3.58
2223 2411 5.885912 TCCTTCACAAAGTTTCTTTGTAGCT 59.114 36.000 21.83 0.00 40.30 3.32
2224 2412 6.038271 TCCTTCACAAAGTTTCTTTGTAGCTC 59.962 38.462 21.83 0.00 40.30 4.09
2225 2413 6.183360 CCTTCACAAAGTTTCTTTGTAGCTCA 60.183 38.462 21.83 8.36 40.30 4.26
2226 2414 6.363577 TCACAAAGTTTCTTTGTAGCTCAG 57.636 37.500 21.83 12.18 40.30 3.35
2227 2415 5.296780 TCACAAAGTTTCTTTGTAGCTCAGG 59.703 40.000 21.83 11.65 40.30 3.86
2228 2416 4.036852 ACAAAGTTTCTTTGTAGCTCAGGC 59.963 41.667 21.23 0.00 40.47 4.85
2229 2417 6.152611 ACAAAGTTTCTTTGTAGCTCAGGCT 61.153 40.000 21.23 0.00 40.47 4.58
2230 2418 6.911897 ACAAAGTTTCTTTGTAGCTCAGGCTA 60.912 38.462 21.23 0.00 39.83 3.93
2239 2427 3.086733 GCTCAGGCTACATGGAACC 57.913 57.895 0.00 0.00 35.22 3.62
2240 2428 0.543749 GCTCAGGCTACATGGAACCT 59.456 55.000 0.00 0.00 35.22 3.50
2241 2429 1.474143 GCTCAGGCTACATGGAACCTC 60.474 57.143 0.00 0.00 35.22 3.85
2242 2430 2.114616 CTCAGGCTACATGGAACCTCT 58.885 52.381 0.00 0.00 0.00 3.69
2243 2431 2.503356 CTCAGGCTACATGGAACCTCTT 59.497 50.000 0.00 0.00 0.00 2.85
2244 2432 3.706594 CTCAGGCTACATGGAACCTCTTA 59.293 47.826 0.00 0.00 0.00 2.10
2245 2433 4.298626 TCAGGCTACATGGAACCTCTTAT 58.701 43.478 0.00 0.00 0.00 1.73
2246 2434 4.345257 TCAGGCTACATGGAACCTCTTATC 59.655 45.833 0.00 0.00 0.00 1.75
2247 2435 3.648545 AGGCTACATGGAACCTCTTATCC 59.351 47.826 0.00 0.00 36.21 2.59
2248 2436 3.648545 GGCTACATGGAACCTCTTATCCT 59.351 47.826 0.00 0.00 36.64 3.24
2249 2437 4.262678 GGCTACATGGAACCTCTTATCCTC 60.263 50.000 0.00 0.00 36.64 3.71
2250 2438 4.345257 GCTACATGGAACCTCTTATCCTCA 59.655 45.833 0.00 0.00 36.64 3.86
2251 2439 5.163301 GCTACATGGAACCTCTTATCCTCAA 60.163 44.000 0.00 0.00 36.64 3.02
2252 2440 5.983333 ACATGGAACCTCTTATCCTCAAT 57.017 39.130 0.00 0.00 36.64 2.57
2253 2441 5.934781 ACATGGAACCTCTTATCCTCAATC 58.065 41.667 0.00 0.00 36.64 2.67
2254 2442 5.163152 ACATGGAACCTCTTATCCTCAATCC 60.163 44.000 0.00 0.00 36.64 3.01
2255 2443 4.635473 TGGAACCTCTTATCCTCAATCCT 58.365 43.478 0.00 0.00 36.64 3.24
2256 2444 4.656112 TGGAACCTCTTATCCTCAATCCTC 59.344 45.833 0.00 0.00 36.64 3.71
2257 2445 4.041075 GGAACCTCTTATCCTCAATCCTCC 59.959 50.000 0.00 0.00 32.75 4.30
2258 2446 4.286813 ACCTCTTATCCTCAATCCTCCA 57.713 45.455 0.00 0.00 0.00 3.86
2259 2447 4.230455 ACCTCTTATCCTCAATCCTCCAG 58.770 47.826 0.00 0.00 0.00 3.86
2260 2448 3.007831 CCTCTTATCCTCAATCCTCCAGC 59.992 52.174 0.00 0.00 0.00 4.85
2261 2449 2.975489 TCTTATCCTCAATCCTCCAGCC 59.025 50.000 0.00 0.00 0.00 4.85
2262 2450 2.803285 TATCCTCAATCCTCCAGCCT 57.197 50.000 0.00 0.00 0.00 4.58
2263 2451 1.904440 ATCCTCAATCCTCCAGCCTT 58.096 50.000 0.00 0.00 0.00 4.35
2264 2452 0.914644 TCCTCAATCCTCCAGCCTTG 59.085 55.000 0.00 0.00 0.00 3.61
2265 2453 0.750911 CCTCAATCCTCCAGCCTTGC 60.751 60.000 0.00 0.00 0.00 4.01
2266 2454 0.255318 CTCAATCCTCCAGCCTTGCT 59.745 55.000 0.00 0.00 40.77 3.91
2267 2455 0.700564 TCAATCCTCCAGCCTTGCTT 59.299 50.000 0.00 0.00 36.40 3.91
2268 2456 1.076024 TCAATCCTCCAGCCTTGCTTT 59.924 47.619 0.00 0.00 36.40 3.51
2269 2457 1.203994 CAATCCTCCAGCCTTGCTTTG 59.796 52.381 0.00 0.00 36.40 2.77
2270 2458 0.700564 ATCCTCCAGCCTTGCTTTGA 59.299 50.000 0.00 0.00 36.40 2.69
2271 2459 0.037303 TCCTCCAGCCTTGCTTTGAG 59.963 55.000 5.73 5.73 36.40 3.02
2272 2460 0.037303 CCTCCAGCCTTGCTTTGAGA 59.963 55.000 11.86 0.00 37.23 3.27
2273 2461 1.340795 CCTCCAGCCTTGCTTTGAGAT 60.341 52.381 11.86 0.00 37.23 2.75
2274 2462 2.015587 CTCCAGCCTTGCTTTGAGATC 58.984 52.381 6.56 0.00 37.23 2.75
2275 2463 1.101331 CCAGCCTTGCTTTGAGATCC 58.899 55.000 0.00 0.00 36.40 3.36
2276 2464 0.731417 CAGCCTTGCTTTGAGATCCG 59.269 55.000 0.00 0.00 36.40 4.18
2277 2465 0.326264 AGCCTTGCTTTGAGATCCGT 59.674 50.000 0.00 0.00 33.89 4.69
2278 2466 1.555075 AGCCTTGCTTTGAGATCCGTA 59.445 47.619 0.00 0.00 33.89 4.02
2279 2467 1.666189 GCCTTGCTTTGAGATCCGTAC 59.334 52.381 0.00 0.00 0.00 3.67
2285 2473 3.958147 TGCTTTGAGATCCGTACTATCCA 59.042 43.478 0.00 0.00 0.00 3.41
2286 2474 4.404394 TGCTTTGAGATCCGTACTATCCAA 59.596 41.667 0.00 0.00 0.00 3.53
2288 2476 5.452077 GCTTTGAGATCCGTACTATCCAACT 60.452 44.000 0.00 0.00 0.00 3.16
2290 2478 7.649533 TTTGAGATCCGTACTATCCAACTAA 57.350 36.000 0.00 0.00 0.00 2.24
2293 2481 7.512130 TGAGATCCGTACTATCCAACTAACTA 58.488 38.462 0.00 0.00 0.00 2.24
2295 2483 8.164058 AGATCCGTACTATCCAACTAACTAAC 57.836 38.462 0.00 0.00 0.00 2.34
2296 2484 7.776969 AGATCCGTACTATCCAACTAACTAACA 59.223 37.037 0.00 0.00 0.00 2.41
2297 2485 7.701539 TCCGTACTATCCAACTAACTAACAA 57.298 36.000 0.00 0.00 0.00 2.83
2298 2486 7.538575 TCCGTACTATCCAACTAACTAACAAC 58.461 38.462 0.00 0.00 0.00 3.32
2303 2491 8.967664 ACTATCCAACTAACTAACAACAACAA 57.032 30.769 0.00 0.00 0.00 2.83
2307 2495 8.514330 TCCAACTAACTAACAACAACAAGATT 57.486 30.769 0.00 0.00 0.00 2.40
2309 2497 9.233232 CCAACTAACTAACAACAACAAGATTTC 57.767 33.333 0.00 0.00 0.00 2.17
2356 2544 9.868277 TGAAACAACATATGAACTTCAAACTTT 57.132 25.926 10.38 0.00 0.00 2.66
2358 2546 7.698836 ACAACATATGAACTTCAAACTTTGC 57.301 32.000 10.38 0.00 0.00 3.68
2359 2547 7.264221 ACAACATATGAACTTCAAACTTTGCA 58.736 30.769 10.38 0.00 0.00 4.08
2360 2548 7.436080 ACAACATATGAACTTCAAACTTTGCAG 59.564 33.333 10.38 0.17 0.00 4.41
2361 2549 7.275888 ACATATGAACTTCAAACTTTGCAGA 57.724 32.000 10.38 0.00 0.00 4.26
2362 2550 7.141363 ACATATGAACTTCAAACTTTGCAGAC 58.859 34.615 10.38 3.27 0.00 3.51
2363 2551 4.370364 TGAACTTCAAACTTTGCAGACC 57.630 40.909 8.00 1.03 0.00 3.85
2364 2552 3.181501 TGAACTTCAAACTTTGCAGACCG 60.182 43.478 8.00 0.00 0.00 4.79
2365 2553 2.639065 ACTTCAAACTTTGCAGACCGA 58.361 42.857 8.00 0.00 0.00 4.69
2366 2554 3.013921 ACTTCAAACTTTGCAGACCGAA 58.986 40.909 8.00 0.00 0.00 4.30
2367 2555 3.181500 ACTTCAAACTTTGCAGACCGAAC 60.181 43.478 8.00 0.00 0.00 3.95
2368 2556 2.360844 TCAAACTTTGCAGACCGAACA 58.639 42.857 0.00 0.00 0.00 3.18
2369 2557 2.750166 TCAAACTTTGCAGACCGAACAA 59.250 40.909 0.00 0.00 0.00 2.83
2370 2558 3.191581 TCAAACTTTGCAGACCGAACAAA 59.808 39.130 0.00 0.00 0.00 2.83
2371 2559 2.844122 ACTTTGCAGACCGAACAAAC 57.156 45.000 0.00 0.00 0.00 2.93
2372 2560 2.088423 ACTTTGCAGACCGAACAAACA 58.912 42.857 0.00 0.00 0.00 2.83
2373 2561 2.687935 ACTTTGCAGACCGAACAAACAT 59.312 40.909 0.00 0.00 0.00 2.71
2374 2562 3.130340 ACTTTGCAGACCGAACAAACATT 59.870 39.130 0.00 0.00 0.00 2.71
2375 2563 4.336993 ACTTTGCAGACCGAACAAACATTA 59.663 37.500 0.00 0.00 0.00 1.90
2376 2564 4.481930 TTGCAGACCGAACAAACATTAG 57.518 40.909 0.00 0.00 0.00 1.73
2377 2565 3.734463 TGCAGACCGAACAAACATTAGA 58.266 40.909 0.00 0.00 0.00 2.10
2378 2566 4.130857 TGCAGACCGAACAAACATTAGAA 58.869 39.130 0.00 0.00 0.00 2.10
2379 2567 4.024387 TGCAGACCGAACAAACATTAGAAC 60.024 41.667 0.00 0.00 0.00 3.01
2380 2568 4.024387 GCAGACCGAACAAACATTAGAACA 60.024 41.667 0.00 0.00 0.00 3.18
2381 2569 5.334879 GCAGACCGAACAAACATTAGAACAT 60.335 40.000 0.00 0.00 0.00 2.71
2382 2570 6.307155 CAGACCGAACAAACATTAGAACATC 58.693 40.000 0.00 0.00 0.00 3.06
2383 2571 5.995282 AGACCGAACAAACATTAGAACATCA 59.005 36.000 0.00 0.00 0.00 3.07
2384 2572 6.485313 AGACCGAACAAACATTAGAACATCAA 59.515 34.615 0.00 0.00 0.00 2.57
2385 2573 7.174946 AGACCGAACAAACATTAGAACATCAAT 59.825 33.333 0.00 0.00 0.00 2.57
2386 2574 7.083858 ACCGAACAAACATTAGAACATCAATG 58.916 34.615 0.00 0.00 37.99 2.82
2387 2575 6.033831 CCGAACAAACATTAGAACATCAATGC 59.966 38.462 0.00 0.00 35.91 3.56
2388 2576 6.237019 CGAACAAACATTAGAACATCAATGCG 60.237 38.462 0.00 0.00 35.91 4.73
2389 2577 6.012658 ACAAACATTAGAACATCAATGCGT 57.987 33.333 0.00 0.00 35.91 5.24
2390 2578 5.858049 ACAAACATTAGAACATCAATGCGTG 59.142 36.000 0.00 0.00 35.91 5.34
2391 2579 5.878332 AACATTAGAACATCAATGCGTGA 57.122 34.783 0.00 0.00 41.67 4.35
2392 2580 5.878332 ACATTAGAACATCAATGCGTGAA 57.122 34.783 0.00 0.00 40.50 3.18
2393 2581 6.252967 ACATTAGAACATCAATGCGTGAAA 57.747 33.333 0.00 0.00 40.50 2.69
2394 2582 6.676950 ACATTAGAACATCAATGCGTGAAAA 58.323 32.000 0.00 0.00 40.50 2.29
2395 2583 7.144661 ACATTAGAACATCAATGCGTGAAAAA 58.855 30.769 0.00 0.00 40.50 1.94
2535 2723 8.717821 TGTAGTTAGAATGTATTGTTGTTCTGC 58.282 33.333 0.00 0.00 33.36 4.26
2536 2724 7.744087 AGTTAGAATGTATTGTTGTTCTGCA 57.256 32.000 0.00 0.00 33.36 4.41
2537 2725 8.165239 AGTTAGAATGTATTGTTGTTCTGCAA 57.835 30.769 0.00 0.00 33.36 4.08
2538 2726 8.629158 AGTTAGAATGTATTGTTGTTCTGCAAA 58.371 29.630 0.00 0.00 39.03 3.68
2539 2727 9.243637 GTTAGAATGTATTGTTGTTCTGCAAAA 57.756 29.630 0.00 0.00 39.03 2.44
2540 2728 9.979578 TTAGAATGTATTGTTGTTCTGCAAAAT 57.020 25.926 0.00 0.00 39.03 1.82
2541 2729 8.891671 AGAATGTATTGTTGTTCTGCAAAATT 57.108 26.923 0.00 0.00 39.03 1.82
2542 2730 9.328845 AGAATGTATTGTTGTTCTGCAAAATTT 57.671 25.926 0.00 0.00 39.03 1.82
2543 2731 9.372541 GAATGTATTGTTGTTCTGCAAAATTTG 57.627 29.630 0.57 0.57 39.03 2.32
2544 2732 8.659925 ATGTATTGTTGTTCTGCAAAATTTGA 57.340 26.923 10.26 0.00 39.03 2.69
2545 2733 8.484641 TGTATTGTTGTTCTGCAAAATTTGAA 57.515 26.923 10.26 0.00 39.03 2.69
2546 2734 8.602328 TGTATTGTTGTTCTGCAAAATTTGAAG 58.398 29.630 10.26 8.76 39.03 3.02
2547 2735 7.614124 ATTGTTGTTCTGCAAAATTTGAAGT 57.386 28.000 13.03 0.00 37.59 3.01
2548 2736 7.432350 TTGTTGTTCTGCAAAATTTGAAGTT 57.568 28.000 13.03 0.00 37.59 2.66
2549 2737 7.059448 TGTTGTTCTGCAAAATTTGAAGTTC 57.941 32.000 13.03 8.30 37.59 3.01
2550 2738 6.648310 TGTTGTTCTGCAAAATTTGAAGTTCA 59.352 30.769 13.03 10.44 37.59 3.18
2551 2739 7.333921 TGTTGTTCTGCAAAATTTGAAGTTCAT 59.666 29.630 13.03 0.00 37.59 2.57
2552 2740 8.816144 GTTGTTCTGCAAAATTTGAAGTTCATA 58.184 29.630 13.03 1.98 37.59 2.15
2553 2741 9.545105 TTGTTCTGCAAAATTTGAAGTTCATAT 57.455 25.926 13.03 4.61 37.59 1.78
2554 2742 8.980610 TGTTCTGCAAAATTTGAAGTTCATATG 58.019 29.630 13.03 0.00 37.59 1.78
2555 2743 8.981647 GTTCTGCAAAATTTGAAGTTCATATGT 58.018 29.630 13.03 0.00 37.59 2.29
2556 2744 9.545105 TTCTGCAAAATTTGAAGTTCATATGTT 57.455 25.926 13.03 6.17 37.59 2.71
2557 2745 8.980610 TCTGCAAAATTTGAAGTTCATATGTTG 58.019 29.630 24.18 24.18 36.64 3.33
2558 2746 8.659925 TGCAAAATTTGAAGTTCATATGTTGT 57.340 26.923 26.67 6.70 36.24 3.32
2559 2747 8.549548 TGCAAAATTTGAAGTTCATATGTTGTG 58.450 29.630 26.67 16.78 36.24 3.33
2560 2748 8.550376 GCAAAATTTGAAGTTCATATGTTGTGT 58.450 29.630 26.67 5.88 36.24 3.72
2562 2750 8.506140 AAATTTGAAGTTCATATGTTGTGTCG 57.494 30.769 6.36 0.00 0.00 4.35
2563 2751 6.612247 TTTGAAGTTCATATGTTGTGTCGT 57.388 33.333 6.36 0.00 0.00 4.34
2564 2752 6.612247 TTGAAGTTCATATGTTGTGTCGTT 57.388 33.333 6.36 0.00 0.00 3.85
2565 2753 6.612247 TGAAGTTCATATGTTGTGTCGTTT 57.388 33.333 0.08 0.00 0.00 3.60
2566 2754 6.426327 TGAAGTTCATATGTTGTGTCGTTTG 58.574 36.000 0.08 0.00 0.00 2.93
2567 2755 6.258947 TGAAGTTCATATGTTGTGTCGTTTGA 59.741 34.615 0.08 0.00 0.00 2.69
2568 2756 6.228273 AGTTCATATGTTGTGTCGTTTGAG 57.772 37.500 1.90 0.00 0.00 3.02
2569 2757 5.989168 AGTTCATATGTTGTGTCGTTTGAGA 59.011 36.000 1.90 0.00 0.00 3.27
2570 2758 6.146184 AGTTCATATGTTGTGTCGTTTGAGAG 59.854 38.462 1.90 0.00 0.00 3.20
2571 2759 5.778862 TCATATGTTGTGTCGTTTGAGAGA 58.221 37.500 1.90 0.00 0.00 3.10
2572 2760 6.220201 TCATATGTTGTGTCGTTTGAGAGAA 58.780 36.000 1.90 0.00 0.00 2.87
2573 2761 6.704050 TCATATGTTGTGTCGTTTGAGAGAAA 59.296 34.615 1.90 0.00 0.00 2.52
2574 2762 4.593597 TGTTGTGTCGTTTGAGAGAAAC 57.406 40.909 0.00 0.00 0.00 2.78
2575 2763 3.997681 TGTTGTGTCGTTTGAGAGAAACA 59.002 39.130 0.00 0.00 33.19 2.83
2576 2764 4.452795 TGTTGTGTCGTTTGAGAGAAACAA 59.547 37.500 0.00 0.00 40.94 2.83
2577 2765 5.049336 TGTTGTGTCGTTTGAGAGAAACAAA 60.049 36.000 3.15 0.00 43.64 2.83
2578 2766 5.614923 TGTGTCGTTTGAGAGAAACAAAA 57.385 34.783 0.00 0.00 38.63 2.44
2579 2767 6.003234 TGTGTCGTTTGAGAGAAACAAAAA 57.997 33.333 0.00 0.00 38.63 1.94
2598 2786 4.838665 AAAAGACAAATGTGTTTGCACG 57.161 36.364 9.13 0.00 46.84 5.34
2599 2787 2.490328 AGACAAATGTGTTTGCACGG 57.510 45.000 0.00 0.00 46.84 4.94
2600 2788 2.020720 AGACAAATGTGTTTGCACGGA 58.979 42.857 0.00 0.00 46.84 4.69
2601 2789 2.622942 AGACAAATGTGTTTGCACGGAT 59.377 40.909 0.00 0.00 46.84 4.18
2602 2790 2.979813 GACAAATGTGTTTGCACGGATC 59.020 45.455 0.00 0.00 46.84 3.36
2603 2791 2.622942 ACAAATGTGTTTGCACGGATCT 59.377 40.909 0.00 0.00 46.84 2.75
2604 2792 3.068024 ACAAATGTGTTTGCACGGATCTT 59.932 39.130 0.00 0.00 46.84 2.40
2605 2793 5.028291 ACAAATGTGTTTGCACGGATCTTG 61.028 41.667 0.00 0.00 46.84 3.02
2606 2794 7.172943 ACAAATGTGTTTGCACGGATCTTGA 62.173 40.000 0.00 0.00 46.84 3.02
2607 2795 8.399304 ACAAATGTGTTTGCACGGATCTTGAT 62.399 38.462 0.00 0.00 46.84 2.57
2608 2796 2.855180 GTGTTTGCACGGATCTTGATG 58.145 47.619 0.00 0.00 35.75 3.07
2609 2797 1.199789 TGTTTGCACGGATCTTGATGC 59.800 47.619 0.00 0.00 38.59 3.91
2610 2798 1.199789 GTTTGCACGGATCTTGATGCA 59.800 47.619 8.86 8.86 45.94 3.96
2611 2799 1.753930 TTGCACGGATCTTGATGCAT 58.246 45.000 0.00 0.00 46.75 3.96
2612 2800 2.618442 TGCACGGATCTTGATGCATA 57.382 45.000 0.00 0.00 42.92 3.14
2613 2801 2.916640 TGCACGGATCTTGATGCATAA 58.083 42.857 0.00 0.00 42.92 1.90
2614 2802 3.277715 TGCACGGATCTTGATGCATAAA 58.722 40.909 0.00 0.00 42.92 1.40
2615 2803 3.884693 TGCACGGATCTTGATGCATAAAT 59.115 39.130 0.00 0.00 42.92 1.40
2616 2804 4.224433 GCACGGATCTTGATGCATAAATG 58.776 43.478 0.00 0.00 38.00 2.32
2617 2805 4.790878 CACGGATCTTGATGCATAAATGG 58.209 43.478 0.00 0.00 0.00 3.16
2618 2806 4.516321 CACGGATCTTGATGCATAAATGGA 59.484 41.667 0.00 0.00 0.00 3.41
2619 2807 5.182570 CACGGATCTTGATGCATAAATGGAT 59.817 40.000 0.00 0.00 41.76 3.41
2620 2808 5.182570 ACGGATCTTGATGCATAAATGGATG 59.817 40.000 0.00 0.00 39.04 3.51
2621 2809 5.392703 CGGATCTTGATGCATAAATGGATGG 60.393 44.000 0.00 0.00 39.04 3.51
2622 2810 4.859304 TCTTGATGCATAAATGGATGGC 57.141 40.909 0.00 0.00 39.04 4.40
2623 2811 4.216708 TCTTGATGCATAAATGGATGGCA 58.783 39.130 0.00 0.00 39.04 4.92
2624 2812 4.650131 TCTTGATGCATAAATGGATGGCAA 59.350 37.500 0.00 1.02 39.04 4.52
2625 2813 5.128991 TCTTGATGCATAAATGGATGGCAAA 59.871 36.000 0.00 0.00 39.04 3.68
2626 2814 4.951254 TGATGCATAAATGGATGGCAAAG 58.049 39.130 0.00 0.00 39.04 2.77
2627 2815 4.650131 TGATGCATAAATGGATGGCAAAGA 59.350 37.500 0.00 0.00 39.04 2.52
2628 2816 5.305902 TGATGCATAAATGGATGGCAAAGAT 59.694 36.000 0.00 0.00 39.04 2.40
2629 2817 6.494146 TGATGCATAAATGGATGGCAAAGATA 59.506 34.615 0.00 0.00 39.04 1.98
2630 2818 6.728089 TGCATAAATGGATGGCAAAGATAA 57.272 33.333 0.00 0.00 0.00 1.75
2631 2819 6.751157 TGCATAAATGGATGGCAAAGATAAG 58.249 36.000 0.00 0.00 0.00 1.73
2632 2820 6.161381 GCATAAATGGATGGCAAAGATAAGG 58.839 40.000 0.00 0.00 0.00 2.69
2633 2821 6.694447 CATAAATGGATGGCAAAGATAAGGG 58.306 40.000 0.00 0.00 0.00 3.95
2634 2822 2.754012 TGGATGGCAAAGATAAGGGG 57.246 50.000 0.00 0.00 0.00 4.79
2635 2823 1.929494 TGGATGGCAAAGATAAGGGGT 59.071 47.619 0.00 0.00 0.00 4.95
2636 2824 3.127250 TGGATGGCAAAGATAAGGGGTA 58.873 45.455 0.00 0.00 0.00 3.69
2637 2825 3.117663 TGGATGGCAAAGATAAGGGGTAC 60.118 47.826 0.00 0.00 0.00 3.34
2649 2837 3.277133 GGGTACCGTGTAGCGTGA 58.723 61.111 5.65 0.00 40.86 4.35
2650 2838 1.138247 GGGTACCGTGTAGCGTGAG 59.862 63.158 5.65 0.00 40.86 3.51
2666 2854 4.842139 CGTGAGCTATAGAAAACCACAC 57.158 45.455 3.21 0.00 0.00 3.82
2667 2855 4.495422 CGTGAGCTATAGAAAACCACACT 58.505 43.478 3.21 0.00 0.00 3.55
2668 2856 4.563184 CGTGAGCTATAGAAAACCACACTC 59.437 45.833 3.21 0.00 0.00 3.51
2669 2857 5.622460 CGTGAGCTATAGAAAACCACACTCT 60.622 44.000 3.21 0.00 0.00 3.24
2670 2858 5.808030 GTGAGCTATAGAAAACCACACTCTC 59.192 44.000 3.21 0.00 0.00 3.20
2703 2891 7.578458 TTCCTCAGTTAGTTTAGGGGTTAAT 57.422 36.000 0.00 0.00 0.00 1.40
2721 2909 7.363431 GGGTTAATGCAATCTTAGTTAGATGC 58.637 38.462 0.00 0.50 42.90 3.91
2728 2916 5.289595 CAATCTTAGTTAGATGCGCTACCA 58.710 41.667 9.73 0.00 42.90 3.25
2745 2933 5.389516 CGCTACCATTTTTGCGGAGTATATC 60.390 44.000 0.00 0.00 43.97 1.63
2746 2934 5.701290 GCTACCATTTTTGCGGAGTATATCT 59.299 40.000 0.00 0.00 0.00 1.98
2796 2992 7.667557 CGACAAGTAATATGGATAGGAGGAAA 58.332 38.462 0.00 0.00 0.00 3.13
2817 3013 9.423061 AGGAAATACACTATTTTGTTTGAATGC 57.577 29.630 0.00 0.00 38.42 3.56
2884 3111 5.360591 CACCTTCAACAGTATATGACTCCC 58.639 45.833 0.00 0.00 35.64 4.30
2913 3140 4.032900 CCAAGAACGAATTGTCCTACATCG 59.967 45.833 0.00 2.46 36.85 3.84
2948 3175 0.399519 ATCCCGTTCCCCTTCGGTAT 60.400 55.000 0.00 0.00 44.51 2.73
2986 3213 1.123928 AAAGCCCCATCTCTACCTCG 58.876 55.000 0.00 0.00 0.00 4.63
3007 3234 0.543410 ATGTACACCAGGGACGACCA 60.543 55.000 6.20 0.00 43.89 4.02
3014 3241 0.905357 CCAGGGACGACCATTCTTCT 59.095 55.000 6.20 0.00 43.89 2.85
3032 3262 5.003804 TCTTCTGGTCCTTAAAATGACTGC 58.996 41.667 0.00 0.00 0.00 4.40
3035 3265 3.334691 TGGTCCTTAAAATGACTGCTCG 58.665 45.455 0.00 0.00 0.00 5.03
3037 3267 4.000988 GGTCCTTAAAATGACTGCTCGAA 58.999 43.478 0.00 0.00 0.00 3.71
3038 3268 4.454504 GGTCCTTAAAATGACTGCTCGAAA 59.545 41.667 0.00 0.00 0.00 3.46
3063 3293 5.627367 GCTCGTCACAGACATATCTATTGAC 59.373 44.000 5.27 5.27 40.59 3.18
3069 3299 6.265422 TCACAGACATATCTATTGACGATGGT 59.735 38.462 0.00 0.00 32.25 3.55
3083 3313 2.930040 ACGATGGTATCTTGCAAGTTCG 59.070 45.455 25.19 22.54 0.00 3.95
3084 3314 2.285834 CGATGGTATCTTGCAAGTTCGC 60.286 50.000 25.19 13.32 0.00 4.70
3089 3319 0.320771 ATCTTGCAAGTTCGCGAGGT 60.321 50.000 25.19 0.00 42.73 3.85
3093 3323 0.245266 TGCAAGTTCGCGAGGTATCA 59.755 50.000 9.59 3.55 33.35 2.15
3102 3332 1.762460 CGAGGTATCAGGGCCAGGT 60.762 63.158 6.18 0.00 0.00 4.00
3119 3349 2.165030 CAGGTGATTTCATGGCTGGTTC 59.835 50.000 0.00 0.00 0.00 3.62
3124 3354 1.974265 TTTCATGGCTGGTTCGAACA 58.026 45.000 28.24 14.13 0.00 3.18
3125 3355 1.234821 TTCATGGCTGGTTCGAACAC 58.765 50.000 28.24 18.01 0.00 3.32
3130 3360 1.300697 GCTGGTTCGAACACGGACT 60.301 57.895 28.24 0.00 36.01 3.85
3132 3362 0.666577 CTGGTTCGAACACGGACTCC 60.667 60.000 28.24 10.18 36.01 3.85
3133 3363 1.364901 GGTTCGAACACGGACTCCA 59.635 57.895 28.24 0.00 36.01 3.86
3154 3384 3.898517 CGCTCTACGTATCATCTGGAA 57.101 47.619 0.00 0.00 36.87 3.53
3158 3388 5.343593 CGCTCTACGTATCATCTGGAAAATC 59.656 44.000 0.00 0.00 36.87 2.17
3159 3389 6.216569 GCTCTACGTATCATCTGGAAAATCA 58.783 40.000 0.00 0.00 0.00 2.57
3162 3392 4.130118 ACGTATCATCTGGAAAATCAGGC 58.870 43.478 0.00 0.00 35.58 4.85
3223 10229 2.784380 GCTATGAACAAGAGCGACTACG 59.216 50.000 0.00 0.00 42.93 3.51
3229 10235 1.064296 AAGAGCGACTACGGATGCG 59.936 57.895 4.58 4.58 40.15 4.73
3245 10251 2.586079 CGTCAGCACCCATAGCGG 60.586 66.667 0.00 0.00 37.01 5.52
3249 10255 4.864334 AGCACCCATAGCGGCTGC 62.864 66.667 13.86 10.33 43.24 5.25
3261 10267 0.589729 GCGGCTGCATTGATGTAACG 60.590 55.000 14.08 0.00 42.15 3.18
3269 10275 3.799963 TGCATTGATGTAACGGACGATAC 59.200 43.478 0.00 1.64 0.00 2.24
3278 10284 3.374220 AACGGACGATACAACACTCAA 57.626 42.857 0.00 0.00 0.00 3.02
3283 10289 4.434198 CGGACGATACAACACTCAAACATG 60.434 45.833 0.00 0.00 0.00 3.21
3285 10291 5.636121 GGACGATACAACACTCAAACATGTA 59.364 40.000 0.00 0.00 0.00 2.29
3307 10313 0.320421 TTACCGGTGCAAGTGCTCTC 60.320 55.000 19.93 0.00 42.66 3.20
3313 10319 1.071987 TGCAAGTGCTCTCCTGGTG 59.928 57.895 4.69 0.00 42.66 4.17
3314 10320 1.372683 GCAAGTGCTCTCCTGGTGA 59.627 57.895 0.00 0.00 38.21 4.02
3315 10321 0.250467 GCAAGTGCTCTCCTGGTGAA 60.250 55.000 0.00 0.00 38.21 3.18
3316 10322 1.612726 GCAAGTGCTCTCCTGGTGAAT 60.613 52.381 0.00 0.00 38.21 2.57
3321 11126 5.957771 AGTGCTCTCCTGGTGAATAAATA 57.042 39.130 0.00 0.00 0.00 1.40
3328 11133 7.068716 GCTCTCCTGGTGAATAAATACCAAAAT 59.931 37.037 0.00 0.00 45.65 1.82
3329 11134 8.893563 TCTCCTGGTGAATAAATACCAAAATT 57.106 30.769 0.00 0.00 45.65 1.82
3346 11151 7.480810 ACCAAAATTTATGAAGATCGCTAACC 58.519 34.615 0.00 0.00 0.00 2.85
3350 11155 7.807977 AATTTATGAAGATCGCTAACCACAT 57.192 32.000 0.00 0.00 0.00 3.21
3356 11161 5.350365 TGAAGATCGCTAACCACATAAACAC 59.650 40.000 0.00 0.00 0.00 3.32
3358 11163 6.216801 AGATCGCTAACCACATAAACACTA 57.783 37.500 0.00 0.00 0.00 2.74
3359 11164 6.040878 AGATCGCTAACCACATAAACACTAC 58.959 40.000 0.00 0.00 0.00 2.73
3361 11166 5.165676 TCGCTAACCACATAAACACTACTG 58.834 41.667 0.00 0.00 0.00 2.74
3362 11167 4.927425 CGCTAACCACATAAACACTACTGT 59.073 41.667 0.00 0.00 0.00 3.55
3363 11168 5.407387 CGCTAACCACATAAACACTACTGTT 59.593 40.000 0.00 0.00 42.81 3.16
3364 11169 6.599437 GCTAACCACATAAACACTACTGTTG 58.401 40.000 0.00 0.00 39.88 3.33
3365 11170 6.204108 GCTAACCACATAAACACTACTGTTGT 59.796 38.462 0.00 0.00 39.88 3.32
3366 11171 6.371809 AACCACATAAACACTACTGTTGTG 57.628 37.500 18.46 18.46 39.88 3.33
3377 11182 4.512944 CACTACTGTTGTGTTGAAGCTCAT 59.487 41.667 13.13 0.00 0.00 2.90
3382 11187 7.042797 ACTGTTGTGTTGAAGCTCATAATTT 57.957 32.000 0.00 0.00 0.00 1.82
3386 11191 5.771469 TGTGTTGAAGCTCATAATTTGTGG 58.229 37.500 0.00 0.00 0.00 4.17
3398 11203 2.837532 ATTTGTGGCATGGGTCAAAC 57.162 45.000 2.78 0.00 33.63 2.93
3401 11206 1.489481 TGTGGCATGGGTCAAACAAA 58.511 45.000 0.00 0.00 0.00 2.83
3403 11208 2.224233 TGTGGCATGGGTCAAACAAATG 60.224 45.455 0.00 0.00 0.00 2.32
3410 11215 5.337491 GCATGGGTCAAACAAATGGATAGTT 60.337 40.000 0.00 0.00 0.00 2.24
3413 11218 7.130681 TGGGTCAAACAAATGGATAGTTTTT 57.869 32.000 0.00 0.00 33.54 1.94
3419 11224 8.877779 TCAAACAAATGGATAGTTTTTGTTGTG 58.122 29.630 12.20 11.95 46.97 3.33
3430 11235 4.926238 AGTTTTTGTTGTGAAAATCGCACA 59.074 33.333 0.00 0.00 43.89 4.57
3431 11236 5.580297 AGTTTTTGTTGTGAAAATCGCACAT 59.420 32.000 0.00 0.00 44.81 3.21
3434 11239 6.926280 TTTGTTGTGAAAATCGCACATATC 57.074 33.333 0.00 0.00 44.81 1.63
3436 11241 5.389778 TGTTGTGAAAATCGCACATATCAC 58.610 37.500 0.00 0.00 44.81 3.06
3440 11245 5.181056 TGTGAAAATCGCACATATCACTGTT 59.819 36.000 9.44 0.00 41.00 3.16
3441 11246 5.509272 GTGAAAATCGCACATATCACTGTTG 59.491 40.000 0.00 0.00 35.49 3.33
3444 11249 2.892374 TCGCACATATCACTGTTGGAG 58.108 47.619 0.00 0.00 0.00 3.86
3447 11252 3.429410 CGCACATATCACTGTTGGAGAGA 60.429 47.826 0.00 0.00 0.00 3.10
3448 11253 4.701765 GCACATATCACTGTTGGAGAGAT 58.298 43.478 0.00 0.00 36.18 2.75
3471 11276 9.398170 AGATATTGCATACAAATTTCGTATTGC 57.602 29.630 16.64 16.64 39.77 3.56
3472 11277 9.179552 GATATTGCATACAAATTTCGTATTGCA 57.820 29.630 19.08 19.08 39.77 4.08
3516 11323 9.547753 CTTACTGTGCTATTTACAGATACCAAT 57.452 33.333 11.65 0.00 46.52 3.16
3542 11355 2.030185 GCCATCAGCCAGATAAATGCAG 60.030 50.000 0.00 0.00 34.43 4.41
3565 11378 4.103311 GGGGTATCTGCCAGAATAGTTTCT 59.897 45.833 0.00 0.00 43.09 2.52
3593 11406 5.163447 GCTATACATGTACCAGTTGTCCTCA 60.163 44.000 7.96 0.00 0.00 3.86
3617 11430 3.487544 GGAACAGATTTCAATAGCGCCAC 60.488 47.826 2.29 0.00 0.00 5.01
3618 11431 2.710377 ACAGATTTCAATAGCGCCACA 58.290 42.857 2.29 0.00 0.00 4.17
3630 11443 1.010419 GCGCCACAGGAAAATGCAAG 61.010 55.000 0.00 0.00 0.00 4.01
3638 11451 3.834231 ACAGGAAAATGCAAGCCAACTAT 59.166 39.130 0.00 0.00 0.00 2.12
3724 11539 7.254692 GGAGATAAATAACTCACTTAAACGGGC 60.255 40.741 0.00 0.00 35.17 6.13
3729 11544 1.628846 ACTCACTTAAACGGGCCATCT 59.371 47.619 4.39 0.00 0.00 2.90
3755 11570 5.484715 TGCAGGTGTTACTATTGGACTAAC 58.515 41.667 0.00 0.00 0.00 2.34
3914 11729 1.399440 CGATCAAAGTGCCAGTGATGG 59.601 52.381 0.00 0.00 32.18 3.51
4074 11889 1.005037 AACGCTTGCGGTGATCAGA 60.005 52.632 19.19 0.00 0.00 3.27
4094 11909 5.036090 CAGAGAGATCGACAAGTTCATCAG 58.964 45.833 0.00 0.00 0.00 2.90
4290 12123 2.683933 AGGGTCGCCACCGAGATT 60.684 61.111 0.00 0.00 45.38 2.40
4293 12126 2.434185 GTCGCCACCGAGATTGCA 60.434 61.111 0.00 0.00 45.38 4.08
4427 12260 4.271816 CGTCGAGGCTGATCCCGG 62.272 72.222 0.00 0.00 34.51 5.73
4589 12423 1.478510 AGCCGATCATTCAGAACGAGT 59.521 47.619 0.00 0.00 44.30 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 4.070552 GAGACCCCGACGCTTGCT 62.071 66.667 0.00 0.00 0.00 3.91
138 139 2.369394 GTCAAATTGCTCGGGGAGATT 58.631 47.619 0.00 0.00 0.00 2.40
142 143 1.376683 CCGTCAAATTGCTCGGGGA 60.377 57.895 16.85 0.00 39.41 4.81
227 228 3.061322 CGGTCACTGAATCCGTACAAAA 58.939 45.455 0.00 0.00 39.51 2.44
237 238 0.036010 CTTGAGGGCGGTCACTGAAT 60.036 55.000 0.00 0.00 0.00 2.57
509 510 9.703892 CAACTTATGCTAAGCAAGATAGACTAT 57.296 33.333 0.00 0.00 43.62 2.12
544 545 8.834004 ACCTACAACAACTAGATTCACCTATA 57.166 34.615 0.00 0.00 0.00 1.31
553 554 6.062095 AGCACAAAACCTACAACAACTAGAT 58.938 36.000 0.00 0.00 0.00 1.98
581 582 8.217131 ACGGAATAAATCTAGCGGTTAATTTT 57.783 30.769 10.78 2.32 0.00 1.82
606 607 7.690952 ATTACGGTTTAGGCTTGAACAAATA 57.309 32.000 5.84 0.00 0.00 1.40
657 658 2.801077 TCGTGGATGTCACCTAGAGA 57.199 50.000 0.00 0.00 43.23 3.10
686 690 5.486526 GCTCTATGCTAGTTTATGAGCCAT 58.513 41.667 12.49 0.00 39.36 4.40
690 694 5.698545 GGTTGGCTCTATGCTAGTTTATGAG 59.301 44.000 0.00 0.00 42.39 2.90
691 695 5.454755 GGGTTGGCTCTATGCTAGTTTATGA 60.455 44.000 0.00 0.00 42.39 2.15
692 696 4.757149 GGGTTGGCTCTATGCTAGTTTATG 59.243 45.833 0.00 0.00 42.39 1.90
693 697 4.503296 CGGGTTGGCTCTATGCTAGTTTAT 60.503 45.833 0.00 0.00 42.39 1.40
694 698 3.181469 CGGGTTGGCTCTATGCTAGTTTA 60.181 47.826 0.00 0.00 42.39 2.01
695 699 2.420129 CGGGTTGGCTCTATGCTAGTTT 60.420 50.000 0.00 0.00 42.39 2.66
696 700 1.139058 CGGGTTGGCTCTATGCTAGTT 59.861 52.381 0.00 0.00 42.39 2.24
697 701 0.753262 CGGGTTGGCTCTATGCTAGT 59.247 55.000 0.00 0.00 42.39 2.57
698 702 1.000283 CTCGGGTTGGCTCTATGCTAG 60.000 57.143 0.00 0.00 42.39 3.42
699 703 1.040646 CTCGGGTTGGCTCTATGCTA 58.959 55.000 0.00 0.00 42.39 3.49
700 704 0.687757 TCTCGGGTTGGCTCTATGCT 60.688 55.000 0.00 0.00 42.39 3.79
701 705 0.249657 CTCTCGGGTTGGCTCTATGC 60.250 60.000 0.00 0.00 41.94 3.14
702 706 0.390860 CCTCTCGGGTTGGCTCTATG 59.609 60.000 0.00 0.00 0.00 2.23
703 707 2.827715 CCTCTCGGGTTGGCTCTAT 58.172 57.895 0.00 0.00 0.00 1.98
704 708 4.356979 CCTCTCGGGTTGGCTCTA 57.643 61.111 0.00 0.00 0.00 2.43
718 722 6.754702 TGACTAGTTGTAGACATGTACCTC 57.245 41.667 0.00 0.00 0.00 3.85
747 751 2.571216 CCGTGGACGAAGGGACACT 61.571 63.158 0.00 0.00 43.02 3.55
758 762 0.661020 CAAACTTGTGGACCGTGGAC 59.339 55.000 0.00 0.00 0.00 4.02
766 770 2.162608 CACGTGGAAACAAACTTGTGGA 59.837 45.455 7.95 0.00 46.06 4.02
787 791 8.651588 CATTGTTGACTAGTTGAATAGACTCAC 58.348 37.037 0.00 0.00 0.00 3.51
790 794 7.604164 CACCATTGTTGACTAGTTGAATAGACT 59.396 37.037 0.00 0.00 0.00 3.24
791 795 7.387948 ACACCATTGTTGACTAGTTGAATAGAC 59.612 37.037 0.00 0.00 28.43 2.59
792 796 7.450074 ACACCATTGTTGACTAGTTGAATAGA 58.550 34.615 0.00 0.00 28.43 1.98
793 797 7.604164 AGACACCATTGTTGACTAGTTGAATAG 59.396 37.037 0.00 0.00 35.47 1.73
794 798 7.450074 AGACACCATTGTTGACTAGTTGAATA 58.550 34.615 0.00 0.00 35.47 1.75
795 799 6.299141 AGACACCATTGTTGACTAGTTGAAT 58.701 36.000 0.00 0.00 35.47 2.57
796 800 5.680619 AGACACCATTGTTGACTAGTTGAA 58.319 37.500 0.00 0.00 35.47 2.69
797 801 5.070446 AGAGACACCATTGTTGACTAGTTGA 59.930 40.000 0.00 0.00 35.47 3.18
798 802 5.300752 AGAGACACCATTGTTGACTAGTTG 58.699 41.667 0.00 0.00 35.47 3.16
799 803 5.552870 AGAGACACCATTGTTGACTAGTT 57.447 39.130 0.00 0.00 35.47 2.24
832 836 4.465512 CGCTGAACCACATGCGGC 62.466 66.667 0.00 0.00 40.01 6.53
882 889 1.271001 TGCATGTTGGGTCTCACTCAG 60.271 52.381 0.00 0.00 25.61 3.35
884 891 2.012673 GATGCATGTTGGGTCTCACTC 58.987 52.381 2.46 0.00 0.00 3.51
887 894 0.034186 GGGATGCATGTTGGGTCTCA 60.034 55.000 2.46 0.00 0.00 3.27
915 922 9.243637 GTTAGTGCTATATAGAATGCATCTAGC 57.756 37.037 14.16 6.98 43.75 3.42
926 933 8.474831 TGCTTCAACTTGTTAGTGCTATATAGA 58.525 33.333 14.16 0.00 34.01 1.98
927 934 8.543774 GTGCTTCAACTTGTTAGTGCTATATAG 58.456 37.037 5.30 5.30 34.01 1.31
995 1004 1.455217 ATGGCCCTGCTCATCTTGC 60.455 57.895 0.00 0.00 0.00 4.01
1024 1033 2.482374 GAGCACCGCAAGCATGAC 59.518 61.111 0.00 0.00 0.00 3.06
1027 1036 3.425713 CACGAGCACCGCAAGCAT 61.426 61.111 0.00 0.00 43.32 3.79
1041 1050 4.374702 GTTGTCGGCAGCAGCACG 62.375 66.667 2.65 4.52 44.61 5.34
1045 1054 1.005294 GCAATTGTTGTCGGCAGCAG 61.005 55.000 6.66 0.00 37.16 4.24
1054 1069 0.383949 GTCACCGTGGCAATTGTTGT 59.616 50.000 7.40 0.00 0.00 3.32
1092 1107 1.562008 TCAGAACCACAAGTGTTGGGA 59.438 47.619 0.00 0.00 35.62 4.37
1096 1111 3.950397 TCACTTCAGAACCACAAGTGTT 58.050 40.909 10.08 0.00 44.91 3.32
1101 1116 4.974645 AGGTATCACTTCAGAACCACAA 57.025 40.909 0.00 0.00 32.43 3.33
1113 1128 1.753073 CCGAACGGGTAAGGTATCACT 59.247 52.381 5.25 0.00 0.00 3.41
1189 1204 3.372660 GAGAGAACTCTCGTTGGTGTT 57.627 47.619 14.67 0.00 45.49 3.32
1200 1215 1.198713 TCCCCAGCATGAGAGAACTC 58.801 55.000 0.00 0.00 39.69 3.01
1205 1220 1.454976 CCCATCCCCAGCATGAGAG 59.545 63.158 0.00 0.00 39.69 3.20
1218 1233 4.273318 ACTTTAGGATTGAGTTGCCCATC 58.727 43.478 0.00 0.00 0.00 3.51
1220 1235 3.806949 ACTTTAGGATTGAGTTGCCCA 57.193 42.857 0.00 0.00 0.00 5.36
1232 1247 6.934645 CACATAAACCTGAGACAACTTTAGGA 59.065 38.462 0.00 0.00 35.86 2.94
1236 1251 5.690865 TCCACATAAACCTGAGACAACTTT 58.309 37.500 0.00 0.00 0.00 2.66
1253 1268 1.895131 GGTTGAAGTTGGCATCCACAT 59.105 47.619 0.00 0.00 30.78 3.21
1256 1271 1.425066 AGAGGTTGAAGTTGGCATCCA 59.575 47.619 0.00 0.00 0.00 3.41
1261 1276 1.798813 CACGTAGAGGTTGAAGTTGGC 59.201 52.381 0.00 0.00 0.00 4.52
1267 1282 2.431419 TGGTGTTCACGTAGAGGTTGAA 59.569 45.455 0.00 0.00 0.00 2.69
1270 1285 3.323979 AGAATGGTGTTCACGTAGAGGTT 59.676 43.478 0.00 0.00 0.00 3.50
1276 1291 2.555325 ACGAGAGAATGGTGTTCACGTA 59.445 45.455 0.00 0.00 0.00 3.57
1277 1292 1.340248 ACGAGAGAATGGTGTTCACGT 59.660 47.619 0.00 0.00 0.00 4.49
1279 1294 4.167268 GAGTACGAGAGAATGGTGTTCAC 58.833 47.826 0.00 0.00 0.00 3.18
1282 1300 3.079578 TCGAGTACGAGAGAATGGTGTT 58.920 45.455 0.00 0.00 43.81 3.32
1300 1318 1.647346 CCGGGAATCATTTTCGTCGA 58.353 50.000 0.00 0.00 0.00 4.20
1320 1338 1.009900 GATGGAGTAGTCGCGGACG 60.010 63.158 6.13 0.00 37.67 4.79
1389 1407 0.878961 AGCCGACAACGAACAAGGAC 60.879 55.000 0.00 0.00 42.66 3.85
1523 1541 1.361271 CATCCGATGCCAACCATGC 59.639 57.895 0.00 0.00 33.29 4.06
1594 1612 1.672363 GCGTGGAGAATCAATGATGCA 59.328 47.619 3.73 0.00 36.25 3.96
1601 1619 0.111446 TTTGGGGCGTGGAGAATCAA 59.889 50.000 0.00 0.00 36.25 2.57
1648 1666 0.541764 GGCCTGAATGTTGGGTTCCA 60.542 55.000 0.00 0.00 0.00 3.53
1649 1667 1.595093 CGGCCTGAATGTTGGGTTCC 61.595 60.000 0.00 0.00 0.00 3.62
1793 1820 1.367840 GGCGAGTCCTGACACTTGT 59.632 57.895 0.00 0.00 31.10 3.16
1846 1873 3.569491 CATCAATGTAAGCATTCCCCCT 58.431 45.455 0.00 0.00 42.91 4.79
1847 1874 2.629617 CCATCAATGTAAGCATTCCCCC 59.370 50.000 0.00 0.00 42.91 5.40
1888 1921 2.107953 GAGATGACCTGGAGCGGC 59.892 66.667 0.00 0.00 0.00 6.53
1889 1922 1.739049 GAGAGATGACCTGGAGCGG 59.261 63.158 0.00 0.00 0.00 5.52
1890 1923 1.039785 TGGAGAGATGACCTGGAGCG 61.040 60.000 0.00 0.00 0.00 5.03
1891 1924 1.344114 GATGGAGAGATGACCTGGAGC 59.656 57.143 0.00 0.00 0.00 4.70
1892 1925 2.961510 AGATGGAGAGATGACCTGGAG 58.038 52.381 0.00 0.00 0.00 3.86
1893 1926 4.106987 TGATAGATGGAGAGATGACCTGGA 59.893 45.833 0.00 0.00 0.00 3.86
1894 1927 4.414677 TGATAGATGGAGAGATGACCTGG 58.585 47.826 0.00 0.00 0.00 4.45
1895 1928 5.953548 AGATGATAGATGGAGAGATGACCTG 59.046 44.000 0.00 0.00 0.00 4.00
1896 1929 6.156554 AGATGATAGATGGAGAGATGACCT 57.843 41.667 0.00 0.00 0.00 3.85
1948 1983 0.955428 TTTTGGCTGCGTAGAGGCTG 60.955 55.000 4.08 0.00 39.27 4.85
1952 1987 0.517316 GGTGTTTTGGCTGCGTAGAG 59.483 55.000 4.08 0.00 0.00 2.43
1956 1991 1.165270 GATAGGTGTTTTGGCTGCGT 58.835 50.000 0.00 0.00 0.00 5.24
1979 2014 5.061721 TGAGCTATCCCAGTCACATAGTA 57.938 43.478 0.00 0.00 0.00 1.82
2001 2036 3.311322 CGGACCAAACACAACGCATATAT 59.689 43.478 0.00 0.00 0.00 0.86
2002 2037 2.673862 CGGACCAAACACAACGCATATA 59.326 45.455 0.00 0.00 0.00 0.86
2003 2038 1.466950 CGGACCAAACACAACGCATAT 59.533 47.619 0.00 0.00 0.00 1.78
2005 2040 0.816018 TCGGACCAAACACAACGCAT 60.816 50.000 0.00 0.00 0.00 4.73
2008 2043 1.157870 AGCTCGGACCAAACACAACG 61.158 55.000 0.00 0.00 0.00 4.10
2021 2056 5.593010 ACTAGCTAGTCATTTTAAGCTCGG 58.407 41.667 20.95 0.00 43.96 4.63
2023 2058 9.667989 GTACTACTAGCTAGTCATTTTAAGCTC 57.332 37.037 29.28 11.79 43.96 4.09
2140 2328 8.143835 CCTGTTTTCTGATTCTTAAACCACATT 58.856 33.333 0.00 0.00 31.25 2.71
2165 2353 5.818678 TGATATATACACCCAGTCAACCC 57.181 43.478 0.00 0.00 0.00 4.11
2197 2385 7.719633 AGCTACAAAGAAACTTTGTGAAGGATA 59.280 33.333 28.42 13.50 42.05 2.59
2199 2387 5.885912 AGCTACAAAGAAACTTTGTGAAGGA 59.114 36.000 28.42 14.55 42.05 3.36
2200 2388 6.136541 AGCTACAAAGAAACTTTGTGAAGG 57.863 37.500 28.42 19.41 42.05 3.46
2201 2389 6.785191 TGAGCTACAAAGAAACTTTGTGAAG 58.215 36.000 28.42 22.13 42.05 3.02
2202 2390 6.183360 CCTGAGCTACAAAGAAACTTTGTGAA 60.183 38.462 28.42 15.62 42.05 3.18
2203 2391 5.296780 CCTGAGCTACAAAGAAACTTTGTGA 59.703 40.000 28.42 16.76 42.05 3.58
2204 2392 5.514279 CCTGAGCTACAAAGAAACTTTGTG 58.486 41.667 28.42 21.31 42.05 3.33
2206 2394 4.540824 GCCTGAGCTACAAAGAAACTTTG 58.459 43.478 18.57 18.57 35.50 2.77
2207 2395 4.837896 GCCTGAGCTACAAAGAAACTTT 57.162 40.909 0.00 0.00 35.50 2.66
2221 2409 0.543749 AGGTTCCATGTAGCCTGAGC 59.456 55.000 0.00 0.00 40.32 4.26
2222 2410 2.114616 AGAGGTTCCATGTAGCCTGAG 58.885 52.381 0.00 0.00 0.00 3.35
2223 2411 2.254152 AGAGGTTCCATGTAGCCTGA 57.746 50.000 0.00 0.00 0.00 3.86
2224 2412 4.503991 GGATAAGAGGTTCCATGTAGCCTG 60.504 50.000 0.00 0.00 31.99 4.85
2225 2413 3.648545 GGATAAGAGGTTCCATGTAGCCT 59.351 47.826 0.00 0.00 31.99 4.58
2226 2414 3.648545 AGGATAAGAGGTTCCATGTAGCC 59.351 47.826 0.00 0.00 34.27 3.93
2227 2415 4.345257 TGAGGATAAGAGGTTCCATGTAGC 59.655 45.833 0.00 0.00 34.27 3.58
2228 2416 6.485830 TTGAGGATAAGAGGTTCCATGTAG 57.514 41.667 0.00 0.00 34.27 2.74
2229 2417 6.043243 GGATTGAGGATAAGAGGTTCCATGTA 59.957 42.308 0.00 0.00 34.27 2.29
2230 2418 5.163152 GGATTGAGGATAAGAGGTTCCATGT 60.163 44.000 0.00 0.00 34.27 3.21
2231 2419 5.072872 AGGATTGAGGATAAGAGGTTCCATG 59.927 44.000 0.00 0.00 34.27 3.66
2232 2420 5.230759 AGGATTGAGGATAAGAGGTTCCAT 58.769 41.667 0.00 0.00 34.27 3.41
2233 2421 4.635473 AGGATTGAGGATAAGAGGTTCCA 58.365 43.478 0.00 0.00 34.27 3.53
2234 2422 4.041075 GGAGGATTGAGGATAAGAGGTTCC 59.959 50.000 0.00 0.00 0.00 3.62
2235 2423 4.656112 TGGAGGATTGAGGATAAGAGGTTC 59.344 45.833 0.00 0.00 0.00 3.62
2236 2424 4.635473 TGGAGGATTGAGGATAAGAGGTT 58.365 43.478 0.00 0.00 0.00 3.50
2237 2425 4.230455 CTGGAGGATTGAGGATAAGAGGT 58.770 47.826 0.00 0.00 0.00 3.85
2238 2426 3.007831 GCTGGAGGATTGAGGATAAGAGG 59.992 52.174 0.00 0.00 0.00 3.69
2239 2427 3.007831 GGCTGGAGGATTGAGGATAAGAG 59.992 52.174 0.00 0.00 0.00 2.85
2240 2428 2.975489 GGCTGGAGGATTGAGGATAAGA 59.025 50.000 0.00 0.00 0.00 2.10
2241 2429 2.978278 AGGCTGGAGGATTGAGGATAAG 59.022 50.000 0.00 0.00 0.00 1.73
2242 2430 3.066208 AGGCTGGAGGATTGAGGATAA 57.934 47.619 0.00 0.00 0.00 1.75
2243 2431 2.707791 CAAGGCTGGAGGATTGAGGATA 59.292 50.000 0.00 0.00 0.00 2.59
2244 2432 1.493871 CAAGGCTGGAGGATTGAGGAT 59.506 52.381 0.00 0.00 0.00 3.24
2245 2433 0.914644 CAAGGCTGGAGGATTGAGGA 59.085 55.000 0.00 0.00 0.00 3.71
2246 2434 0.750911 GCAAGGCTGGAGGATTGAGG 60.751 60.000 0.00 0.00 0.00 3.86
2247 2435 0.255318 AGCAAGGCTGGAGGATTGAG 59.745 55.000 0.00 0.00 37.57 3.02
2248 2436 0.700564 AAGCAAGGCTGGAGGATTGA 59.299 50.000 0.00 0.00 39.62 2.57
2249 2437 1.203994 CAAAGCAAGGCTGGAGGATTG 59.796 52.381 0.00 0.00 39.62 2.67
2250 2438 1.076024 TCAAAGCAAGGCTGGAGGATT 59.924 47.619 0.00 0.00 39.62 3.01
2251 2439 0.700564 TCAAAGCAAGGCTGGAGGAT 59.299 50.000 0.00 0.00 39.62 3.24
2252 2440 0.037303 CTCAAAGCAAGGCTGGAGGA 59.963 55.000 0.00 0.00 39.62 3.71
2253 2441 0.037303 TCTCAAAGCAAGGCTGGAGG 59.963 55.000 15.67 3.44 39.62 4.30
2254 2442 2.015587 GATCTCAAAGCAAGGCTGGAG 58.984 52.381 11.70 11.70 39.62 3.86
2255 2443 1.340405 GGATCTCAAAGCAAGGCTGGA 60.340 52.381 0.00 0.00 39.62 3.86
2256 2444 1.101331 GGATCTCAAAGCAAGGCTGG 58.899 55.000 0.00 0.00 39.62 4.85
2257 2445 0.731417 CGGATCTCAAAGCAAGGCTG 59.269 55.000 0.00 0.00 39.62 4.85
2258 2446 0.326264 ACGGATCTCAAAGCAAGGCT 59.674 50.000 0.00 0.00 42.56 4.58
2259 2447 1.666189 GTACGGATCTCAAAGCAAGGC 59.334 52.381 0.00 0.00 0.00 4.35
2260 2448 3.252974 AGTACGGATCTCAAAGCAAGG 57.747 47.619 0.00 0.00 0.00 3.61
2261 2449 4.985409 GGATAGTACGGATCTCAAAGCAAG 59.015 45.833 9.74 0.00 0.00 4.01
2262 2450 4.404394 TGGATAGTACGGATCTCAAAGCAA 59.596 41.667 9.74 0.00 0.00 3.91
2263 2451 3.958147 TGGATAGTACGGATCTCAAAGCA 59.042 43.478 9.74 0.00 0.00 3.91
2264 2452 4.585955 TGGATAGTACGGATCTCAAAGC 57.414 45.455 9.74 0.00 0.00 3.51
2265 2453 6.150396 AGTTGGATAGTACGGATCTCAAAG 57.850 41.667 9.74 0.00 0.00 2.77
2266 2454 7.341256 AGTTAGTTGGATAGTACGGATCTCAAA 59.659 37.037 9.74 2.33 0.00 2.69
2267 2455 6.832384 AGTTAGTTGGATAGTACGGATCTCAA 59.168 38.462 9.74 9.28 0.00 3.02
2268 2456 6.363065 AGTTAGTTGGATAGTACGGATCTCA 58.637 40.000 9.74 5.01 0.00 3.27
2269 2457 6.880942 AGTTAGTTGGATAGTACGGATCTC 57.119 41.667 9.74 3.05 0.00 2.75
2270 2458 7.776969 TGTTAGTTAGTTGGATAGTACGGATCT 59.223 37.037 9.74 0.00 0.00 2.75
2271 2459 7.934457 TGTTAGTTAGTTGGATAGTACGGATC 58.066 38.462 3.00 3.00 0.00 3.36
2272 2460 7.886629 TGTTAGTTAGTTGGATAGTACGGAT 57.113 36.000 0.00 0.00 0.00 4.18
2273 2461 7.176515 TGTTGTTAGTTAGTTGGATAGTACGGA 59.823 37.037 0.00 0.00 0.00 4.69
2274 2462 7.315142 TGTTGTTAGTTAGTTGGATAGTACGG 58.685 38.462 0.00 0.00 0.00 4.02
2275 2463 8.642020 GTTGTTGTTAGTTAGTTGGATAGTACG 58.358 37.037 0.00 0.00 0.00 3.67
2276 2464 9.480053 TGTTGTTGTTAGTTAGTTGGATAGTAC 57.520 33.333 0.00 0.00 0.00 2.73
2278 2466 8.967664 TTGTTGTTGTTAGTTAGTTGGATAGT 57.032 30.769 0.00 0.00 0.00 2.12
2279 2467 9.268268 TCTTGTTGTTGTTAGTTAGTTGGATAG 57.732 33.333 0.00 0.00 0.00 2.08
2286 2474 9.614792 AGAGAAATCTTGTTGTTGTTAGTTAGT 57.385 29.630 0.00 0.00 0.00 2.24
2330 2518 9.868277 AAAGTTTGAAGTTCATATGTTGTTTCA 57.132 25.926 6.36 6.60 0.00 2.69
2332 2520 8.603181 GCAAAGTTTGAAGTTCATATGTTGTTT 58.397 29.630 19.82 0.00 0.00 2.83
2334 2522 7.264221 TGCAAAGTTTGAAGTTCATATGTTGT 58.736 30.769 19.82 0.00 0.00 3.32
2335 2523 7.648908 TCTGCAAAGTTTGAAGTTCATATGTTG 59.351 33.333 20.86 10.86 37.59 3.33
2336 2524 7.649306 GTCTGCAAAGTTTGAAGTTCATATGTT 59.351 33.333 20.86 0.00 37.59 2.71
2337 2525 7.141363 GTCTGCAAAGTTTGAAGTTCATATGT 58.859 34.615 20.86 0.00 37.59 2.29
2340 2528 5.277779 CGGTCTGCAAAGTTTGAAGTTCATA 60.278 40.000 20.86 0.00 37.59 2.15
2341 2529 4.498009 CGGTCTGCAAAGTTTGAAGTTCAT 60.498 41.667 20.86 0.00 37.59 2.57
2343 2531 3.064820 TCGGTCTGCAAAGTTTGAAGTTC 59.935 43.478 20.86 15.17 37.59 3.01
2344 2532 3.013921 TCGGTCTGCAAAGTTTGAAGTT 58.986 40.909 20.86 0.00 37.59 2.66
2345 2533 2.639065 TCGGTCTGCAAAGTTTGAAGT 58.361 42.857 20.86 0.00 37.59 3.01
2346 2534 3.181501 TGTTCGGTCTGCAAAGTTTGAAG 60.182 43.478 19.82 18.11 37.69 3.02
2347 2535 2.750166 TGTTCGGTCTGCAAAGTTTGAA 59.250 40.909 19.82 8.06 0.00 2.69
2350 2538 3.057174 TGTTTGTTCGGTCTGCAAAGTTT 60.057 39.130 0.00 0.00 33.50 2.66
2351 2539 2.490115 TGTTTGTTCGGTCTGCAAAGTT 59.510 40.909 0.00 0.00 33.50 2.66
2353 2541 2.842208 TGTTTGTTCGGTCTGCAAAG 57.158 45.000 0.00 0.00 33.50 2.77
2354 2542 3.791973 AATGTTTGTTCGGTCTGCAAA 57.208 38.095 0.00 0.00 0.00 3.68
2355 2543 4.130857 TCTAATGTTTGTTCGGTCTGCAA 58.869 39.130 0.00 0.00 0.00 4.08
2356 2544 3.734463 TCTAATGTTTGTTCGGTCTGCA 58.266 40.909 0.00 0.00 0.00 4.41
2357 2545 4.024387 TGTTCTAATGTTTGTTCGGTCTGC 60.024 41.667 0.00 0.00 0.00 4.26
2358 2546 5.666969 TGTTCTAATGTTTGTTCGGTCTG 57.333 39.130 0.00 0.00 0.00 3.51
2359 2547 5.995282 TGATGTTCTAATGTTTGTTCGGTCT 59.005 36.000 0.00 0.00 0.00 3.85
2360 2548 6.236017 TGATGTTCTAATGTTTGTTCGGTC 57.764 37.500 0.00 0.00 0.00 4.79
2361 2549 6.627395 TTGATGTTCTAATGTTTGTTCGGT 57.373 33.333 0.00 0.00 0.00 4.69
2362 2550 6.033831 GCATTGATGTTCTAATGTTTGTTCGG 59.966 38.462 0.00 0.00 36.81 4.30
2363 2551 6.237019 CGCATTGATGTTCTAATGTTTGTTCG 60.237 38.462 0.00 0.00 36.81 3.95
2364 2552 6.582295 ACGCATTGATGTTCTAATGTTTGTTC 59.418 34.615 0.00 0.00 36.81 3.18
2365 2553 6.363088 CACGCATTGATGTTCTAATGTTTGTT 59.637 34.615 0.00 0.00 36.81 2.83
2366 2554 5.858049 CACGCATTGATGTTCTAATGTTTGT 59.142 36.000 0.00 0.00 36.81 2.83
2367 2555 6.085573 TCACGCATTGATGTTCTAATGTTTG 58.914 36.000 0.00 0.00 36.81 2.93
2368 2556 6.252967 TCACGCATTGATGTTCTAATGTTT 57.747 33.333 0.00 0.00 36.81 2.83
2369 2557 5.878332 TCACGCATTGATGTTCTAATGTT 57.122 34.783 0.00 0.00 36.81 2.71
2370 2558 5.878332 TTCACGCATTGATGTTCTAATGT 57.122 34.783 0.00 0.00 36.81 2.71
2371 2559 7.565450 TTTTTCACGCATTGATGTTCTAATG 57.435 32.000 0.00 0.00 37.35 1.90
2509 2697 8.717821 GCAGAACAACAATACATTCTAACTACA 58.282 33.333 0.00 0.00 30.28 2.74
2510 2698 8.717821 TGCAGAACAACAATACATTCTAACTAC 58.282 33.333 0.00 0.00 30.28 2.73
2511 2699 8.840833 TGCAGAACAACAATACATTCTAACTA 57.159 30.769 0.00 0.00 30.28 2.24
2512 2700 7.744087 TGCAGAACAACAATACATTCTAACT 57.256 32.000 0.00 0.00 30.28 2.24
2513 2701 8.795786 TTTGCAGAACAACAATACATTCTAAC 57.204 30.769 0.00 0.00 38.23 2.34
2514 2702 9.979578 ATTTTGCAGAACAACAATACATTCTAA 57.020 25.926 0.00 0.00 38.23 2.10
2515 2703 9.979578 AATTTTGCAGAACAACAATACATTCTA 57.020 25.926 0.00 0.00 38.23 2.10
2516 2704 8.891671 AATTTTGCAGAACAACAATACATTCT 57.108 26.923 0.00 0.00 38.23 2.40
2517 2705 9.372541 CAAATTTTGCAGAACAACAATACATTC 57.627 29.630 0.00 0.00 38.23 2.67
2518 2706 9.107177 TCAAATTTTGCAGAACAACAATACATT 57.893 25.926 4.19 0.00 38.23 2.71
2519 2707 8.659925 TCAAATTTTGCAGAACAACAATACAT 57.340 26.923 4.19 0.00 38.23 2.29
2520 2708 8.484641 TTCAAATTTTGCAGAACAACAATACA 57.515 26.923 4.19 0.00 38.23 2.29
2521 2709 8.603181 ACTTCAAATTTTGCAGAACAACAATAC 58.397 29.630 14.44 0.00 38.23 1.89
2522 2710 8.715191 ACTTCAAATTTTGCAGAACAACAATA 57.285 26.923 14.44 0.00 38.23 1.90
2523 2711 7.614124 ACTTCAAATTTTGCAGAACAACAAT 57.386 28.000 14.44 0.00 38.23 2.71
2524 2712 7.172190 TGAACTTCAAATTTTGCAGAACAACAA 59.828 29.630 14.44 0.00 38.23 2.83
2525 2713 6.648310 TGAACTTCAAATTTTGCAGAACAACA 59.352 30.769 14.44 5.42 38.23 3.33
2526 2714 7.059448 TGAACTTCAAATTTTGCAGAACAAC 57.941 32.000 14.44 3.44 38.23 3.32
2527 2715 7.846644 ATGAACTTCAAATTTTGCAGAACAA 57.153 28.000 14.44 0.00 36.13 2.83
2528 2716 8.980610 CATATGAACTTCAAATTTTGCAGAACA 58.019 29.630 14.44 12.81 0.00 3.18
2529 2717 8.981647 ACATATGAACTTCAAATTTTGCAGAAC 58.018 29.630 14.44 8.63 0.00 3.01
2530 2718 9.545105 AACATATGAACTTCAAATTTTGCAGAA 57.455 25.926 14.44 0.00 0.00 3.02
2531 2719 8.980610 CAACATATGAACTTCAAATTTTGCAGA 58.019 29.630 14.44 0.67 0.00 4.26
2532 2720 8.767085 ACAACATATGAACTTCAAATTTTGCAG 58.233 29.630 10.38 7.16 0.00 4.41
2533 2721 8.549548 CACAACATATGAACTTCAAATTTTGCA 58.450 29.630 10.38 0.00 0.00 4.08
2534 2722 8.550376 ACACAACATATGAACTTCAAATTTTGC 58.450 29.630 10.38 0.00 0.00 3.68
2536 2724 8.967218 CGACACAACATATGAACTTCAAATTTT 58.033 29.630 10.38 0.00 0.00 1.82
2537 2725 8.134895 ACGACACAACATATGAACTTCAAATTT 58.865 29.630 10.38 0.00 0.00 1.82
2538 2726 7.648142 ACGACACAACATATGAACTTCAAATT 58.352 30.769 10.38 0.00 0.00 1.82
2539 2727 7.202016 ACGACACAACATATGAACTTCAAAT 57.798 32.000 10.38 0.00 0.00 2.32
2540 2728 6.612247 ACGACACAACATATGAACTTCAAA 57.388 33.333 10.38 0.00 0.00 2.69
2541 2729 6.612247 AACGACACAACATATGAACTTCAA 57.388 33.333 10.38 0.00 0.00 2.69
2542 2730 6.258947 TCAAACGACACAACATATGAACTTCA 59.741 34.615 10.38 0.00 0.00 3.02
2543 2731 6.655062 TCAAACGACACAACATATGAACTTC 58.345 36.000 10.38 0.00 0.00 3.01
2544 2732 6.481976 TCTCAAACGACACAACATATGAACTT 59.518 34.615 10.38 0.00 0.00 2.66
2545 2733 5.989168 TCTCAAACGACACAACATATGAACT 59.011 36.000 10.38 0.00 0.00 3.01
2546 2734 6.145534 TCTCTCAAACGACACAACATATGAAC 59.854 38.462 10.38 0.00 0.00 3.18
2547 2735 6.220201 TCTCTCAAACGACACAACATATGAA 58.780 36.000 10.38 0.00 0.00 2.57
2548 2736 5.778862 TCTCTCAAACGACACAACATATGA 58.221 37.500 10.38 0.00 0.00 2.15
2549 2737 6.466308 TTCTCTCAAACGACACAACATATG 57.534 37.500 0.00 0.00 0.00 1.78
2550 2738 6.481976 TGTTTCTCTCAAACGACACAACATAT 59.518 34.615 0.00 0.00 33.05 1.78
2551 2739 5.813157 TGTTTCTCTCAAACGACACAACATA 59.187 36.000 0.00 0.00 33.05 2.29
2552 2740 4.634004 TGTTTCTCTCAAACGACACAACAT 59.366 37.500 0.00 0.00 33.05 2.71
2553 2741 3.997681 TGTTTCTCTCAAACGACACAACA 59.002 39.130 0.00 0.00 33.05 3.33
2554 2742 4.593597 TGTTTCTCTCAAACGACACAAC 57.406 40.909 0.00 0.00 33.05 3.32
2555 2743 5.614923 TTTGTTTCTCTCAAACGACACAA 57.385 34.783 0.00 0.00 30.54 3.33
2556 2744 5.614923 TTTTGTTTCTCTCAAACGACACA 57.385 34.783 0.00 0.00 35.05 3.72
2588 2776 2.855180 CATCAAGATCCGTGCAAACAC 58.145 47.619 0.00 0.00 43.76 3.32
2589 2777 1.199789 GCATCAAGATCCGTGCAAACA 59.800 47.619 0.00 0.00 37.52 2.83
2590 2778 1.199789 TGCATCAAGATCCGTGCAAAC 59.800 47.619 8.80 0.00 43.83 2.93
2591 2779 1.532523 TGCATCAAGATCCGTGCAAA 58.467 45.000 8.80 0.00 43.83 3.68
2592 2780 3.246403 TGCATCAAGATCCGTGCAA 57.754 47.368 8.80 0.00 43.83 4.08
2594 2782 3.969117 TTTATGCATCAAGATCCGTGC 57.031 42.857 0.19 0.00 38.05 5.34
2595 2783 4.516321 TCCATTTATGCATCAAGATCCGTG 59.484 41.667 0.19 0.00 0.00 4.94
2596 2784 4.717877 TCCATTTATGCATCAAGATCCGT 58.282 39.130 0.19 0.00 0.00 4.69
2597 2785 5.392703 CCATCCATTTATGCATCAAGATCCG 60.393 44.000 0.19 0.00 0.00 4.18
2598 2786 5.623824 GCCATCCATTTATGCATCAAGATCC 60.624 44.000 0.19 0.00 0.00 3.36
2599 2787 5.047590 TGCCATCCATTTATGCATCAAGATC 60.048 40.000 0.19 0.00 0.00 2.75
2600 2788 4.836175 TGCCATCCATTTATGCATCAAGAT 59.164 37.500 0.19 0.00 0.00 2.40
2601 2789 4.216708 TGCCATCCATTTATGCATCAAGA 58.783 39.130 0.19 0.00 0.00 3.02
2602 2790 4.594123 TGCCATCCATTTATGCATCAAG 57.406 40.909 0.19 0.00 0.00 3.02
2603 2791 5.128991 TCTTTGCCATCCATTTATGCATCAA 59.871 36.000 0.19 0.00 0.00 2.57
2604 2792 4.650131 TCTTTGCCATCCATTTATGCATCA 59.350 37.500 0.19 0.00 0.00 3.07
2605 2793 5.204409 TCTTTGCCATCCATTTATGCATC 57.796 39.130 0.19 0.00 0.00 3.91
2606 2794 5.818678 ATCTTTGCCATCCATTTATGCAT 57.181 34.783 3.79 3.79 0.00 3.96
2607 2795 6.239373 CCTTATCTTTGCCATCCATTTATGCA 60.239 38.462 0.00 0.00 0.00 3.96
2608 2796 6.161381 CCTTATCTTTGCCATCCATTTATGC 58.839 40.000 0.00 0.00 0.00 3.14
2609 2797 6.295462 CCCCTTATCTTTGCCATCCATTTATG 60.295 42.308 0.00 0.00 0.00 1.90
2610 2798 5.781818 CCCCTTATCTTTGCCATCCATTTAT 59.218 40.000 0.00 0.00 0.00 1.40
2611 2799 5.147032 CCCCTTATCTTTGCCATCCATTTA 58.853 41.667 0.00 0.00 0.00 1.40
2612 2800 3.969312 CCCCTTATCTTTGCCATCCATTT 59.031 43.478 0.00 0.00 0.00 2.32
2613 2801 3.051880 ACCCCTTATCTTTGCCATCCATT 60.052 43.478 0.00 0.00 0.00 3.16
2614 2802 2.519691 ACCCCTTATCTTTGCCATCCAT 59.480 45.455 0.00 0.00 0.00 3.41
2615 2803 1.929494 ACCCCTTATCTTTGCCATCCA 59.071 47.619 0.00 0.00 0.00 3.41
2616 2804 2.755952 ACCCCTTATCTTTGCCATCC 57.244 50.000 0.00 0.00 0.00 3.51
2617 2805 3.487372 GGTACCCCTTATCTTTGCCATC 58.513 50.000 0.00 0.00 0.00 3.51
2618 2806 2.158667 CGGTACCCCTTATCTTTGCCAT 60.159 50.000 6.25 0.00 0.00 4.40
2619 2807 1.210967 CGGTACCCCTTATCTTTGCCA 59.789 52.381 6.25 0.00 0.00 4.92
2620 2808 1.211212 ACGGTACCCCTTATCTTTGCC 59.789 52.381 6.25 0.00 0.00 4.52
2621 2809 2.285977 CACGGTACCCCTTATCTTTGC 58.714 52.381 6.25 0.00 0.00 3.68
2622 2810 3.622166 ACACGGTACCCCTTATCTTTG 57.378 47.619 6.25 0.00 0.00 2.77
2623 2811 3.133542 GCTACACGGTACCCCTTATCTTT 59.866 47.826 6.25 0.00 0.00 2.52
2624 2812 2.697229 GCTACACGGTACCCCTTATCTT 59.303 50.000 6.25 0.00 0.00 2.40
2625 2813 2.314246 GCTACACGGTACCCCTTATCT 58.686 52.381 6.25 0.00 0.00 1.98
2626 2814 1.000938 CGCTACACGGTACCCCTTATC 60.001 57.143 6.25 0.00 38.44 1.75
2627 2815 1.035139 CGCTACACGGTACCCCTTAT 58.965 55.000 6.25 0.00 38.44 1.73
2628 2816 2.492418 CGCTACACGGTACCCCTTA 58.508 57.895 6.25 0.00 38.44 2.69
2629 2817 3.291611 CGCTACACGGTACCCCTT 58.708 61.111 6.25 0.00 38.44 3.95
2633 2821 1.930908 AGCTCACGCTACACGGTACC 61.931 60.000 0.16 0.16 46.79 3.34
2634 2822 0.729116 TAGCTCACGCTACACGGTAC 59.271 55.000 0.00 0.00 46.79 3.34
2635 2823 3.157727 TAGCTCACGCTACACGGTA 57.842 52.632 0.00 0.00 46.79 4.02
2636 2824 3.991999 TAGCTCACGCTACACGGT 58.008 55.556 0.00 0.00 46.79 4.83
2644 2832 3.062234 GTGTGGTTTTCTATAGCTCACGC 59.938 47.826 0.00 0.00 30.94 5.34
2645 2833 4.495422 AGTGTGGTTTTCTATAGCTCACG 58.505 43.478 0.00 0.00 40.45 4.35
2646 2834 5.725362 AGAGTGTGGTTTTCTATAGCTCAC 58.275 41.667 0.00 0.00 37.61 3.51
2647 2835 5.717178 AGAGAGTGTGGTTTTCTATAGCTCA 59.283 40.000 0.00 0.00 0.00 4.26
2648 2836 6.215495 AGAGAGTGTGGTTTTCTATAGCTC 57.785 41.667 0.00 0.00 0.00 4.09
2649 2837 7.906199 ATAGAGAGTGTGGTTTTCTATAGCT 57.094 36.000 0.00 0.00 31.25 3.32
2650 2838 9.849166 GATATAGAGAGTGTGGTTTTCTATAGC 57.151 37.037 0.00 3.55 37.00 2.97
2653 2841 9.440761 AAGGATATAGAGAGTGTGGTTTTCTAT 57.559 33.333 0.00 0.00 35.75 1.98
2654 2842 8.840200 AAGGATATAGAGAGTGTGGTTTTCTA 57.160 34.615 0.00 0.00 0.00 2.10
2655 2843 7.741554 AAGGATATAGAGAGTGTGGTTTTCT 57.258 36.000 0.00 0.00 0.00 2.52
2656 2844 7.496263 GGAAAGGATATAGAGAGTGTGGTTTTC 59.504 40.741 0.00 0.00 0.00 2.29
2657 2845 7.182930 AGGAAAGGATATAGAGAGTGTGGTTTT 59.817 37.037 0.00 0.00 0.00 2.43
2658 2846 6.674419 AGGAAAGGATATAGAGAGTGTGGTTT 59.326 38.462 0.00 0.00 0.00 3.27
2659 2847 6.206042 AGGAAAGGATATAGAGAGTGTGGTT 58.794 40.000 0.00 0.00 0.00 3.67
2660 2848 5.782925 AGGAAAGGATATAGAGAGTGTGGT 58.217 41.667 0.00 0.00 0.00 4.16
2661 2849 5.835819 TGAGGAAAGGATATAGAGAGTGTGG 59.164 44.000 0.00 0.00 0.00 4.17
2662 2850 6.549364 ACTGAGGAAAGGATATAGAGAGTGTG 59.451 42.308 0.00 0.00 0.00 3.82
2663 2851 6.678547 ACTGAGGAAAGGATATAGAGAGTGT 58.321 40.000 0.00 0.00 0.00 3.55
2664 2852 7.595819 AACTGAGGAAAGGATATAGAGAGTG 57.404 40.000 0.00 0.00 0.00 3.51
2665 2853 8.507761 ACTAACTGAGGAAAGGATATAGAGAGT 58.492 37.037 0.00 0.00 0.00 3.24
2666 2854 8.934023 ACTAACTGAGGAAAGGATATAGAGAG 57.066 38.462 0.00 0.00 0.00 3.20
2667 2855 9.716556 AAACTAACTGAGGAAAGGATATAGAGA 57.283 33.333 0.00 0.00 0.00 3.10
2703 2891 3.797039 AGCGCATCTAACTAAGATTGCA 58.203 40.909 11.47 0.00 42.62 4.08
2759 2955 9.909644 CCATATTACTTGTCGCTAACTTAGTAT 57.090 33.333 0.00 0.00 30.83 2.12
2768 2964 6.377429 CCTCCTATCCATATTACTTGTCGCTA 59.623 42.308 0.00 0.00 0.00 4.26
2788 2984 8.934023 TCAAACAAAATAGTGTATTTCCTCCT 57.066 30.769 0.00 0.00 37.39 3.69
2796 2992 9.142515 CACATGCATTCAAACAAAATAGTGTAT 57.857 29.630 0.00 0.00 0.00 2.29
2853 3049 8.328758 TCATATACTGTTGAAGGTGGAAAGAAT 58.671 33.333 0.00 0.00 0.00 2.40
2884 3111 3.365364 GGACAATTCGTTCTTGGCTGAAG 60.365 47.826 0.00 0.00 32.00 3.02
2913 3140 1.160137 GGATGCTCATATTCCCGCAC 58.840 55.000 0.00 0.00 34.93 5.34
2948 3175 0.250858 TGCAAAGCAGCCAAGCTCTA 60.251 50.000 0.00 0.00 45.89 2.43
2986 3213 0.739813 GTCGTCCCTGGTGTACATGC 60.740 60.000 0.00 0.00 0.00 4.06
3007 3234 6.151817 GCAGTCATTTTAAGGACCAGAAGAAT 59.848 38.462 3.87 0.00 40.35 2.40
3014 3241 3.007506 TCGAGCAGTCATTTTAAGGACCA 59.992 43.478 3.87 0.00 40.35 4.02
3025 3255 0.244994 ACGAGCTTTCGAGCAGTCAT 59.755 50.000 1.98 0.00 37.25 3.06
3032 3262 1.332178 GTCTGTGACGAGCTTTCGAG 58.668 55.000 1.98 0.00 36.85 4.04
3035 3265 4.677584 AGATATGTCTGTGACGAGCTTTC 58.322 43.478 0.00 0.00 34.95 2.62
3037 3267 6.039829 TCAATAGATATGTCTGTGACGAGCTT 59.960 38.462 1.62 0.00 34.95 3.74
3038 3268 5.532779 TCAATAGATATGTCTGTGACGAGCT 59.467 40.000 1.62 0.00 34.95 4.09
3063 3293 2.285834 GCGAACTTGCAAGATACCATCG 60.286 50.000 32.50 25.89 34.15 3.84
3066 3296 1.075542 CGCGAACTTGCAAGATACCA 58.924 50.000 32.50 0.00 34.15 3.25
3069 3299 1.067142 ACCTCGCGAACTTGCAAGATA 60.067 47.619 32.50 5.10 34.15 1.98
3083 3313 2.423446 CTGGCCCTGATACCTCGC 59.577 66.667 0.00 0.00 0.00 5.03
3084 3314 1.762460 ACCTGGCCCTGATACCTCG 60.762 63.158 0.00 0.00 0.00 4.63
3089 3319 2.204463 TGAAATCACCTGGCCCTGATA 58.796 47.619 0.00 0.00 0.00 2.15
3093 3323 0.032813 CCATGAAATCACCTGGCCCT 60.033 55.000 0.00 0.00 0.00 5.19
3102 3332 2.487762 GTTCGAACCAGCCATGAAATCA 59.512 45.455 17.68 0.00 0.00 2.57
3115 3345 0.942884 GTGGAGTCCGTGTTCGAACC 60.943 60.000 24.78 14.94 39.71 3.62
3119 3349 3.103911 GCGTGGAGTCCGTGTTCG 61.104 66.667 4.30 5.54 0.00 3.95
3124 3354 2.396955 CGTAGAGCGTGGAGTCCGT 61.397 63.158 4.30 0.00 35.54 4.69
3125 3355 2.403987 CGTAGAGCGTGGAGTCCG 59.596 66.667 4.30 0.00 35.54 4.79
3142 3372 4.024556 CACGCCTGATTTTCCAGATGATAC 60.025 45.833 0.00 0.00 36.29 2.24
3143 3373 4.129380 CACGCCTGATTTTCCAGATGATA 58.871 43.478 0.00 0.00 36.29 2.15
3150 3380 0.109532 TCACCACGCCTGATTTTCCA 59.890 50.000 0.00 0.00 0.00 3.53
3153 3383 1.608590 CACTTCACCACGCCTGATTTT 59.391 47.619 0.00 0.00 0.00 1.82
3154 3384 1.238439 CACTTCACCACGCCTGATTT 58.762 50.000 0.00 0.00 0.00 2.17
3158 3388 2.669569 CCCACTTCACCACGCCTG 60.670 66.667 0.00 0.00 0.00 4.85
3159 3389 4.643387 GCCCACTTCACCACGCCT 62.643 66.667 0.00 0.00 0.00 5.52
3162 3392 1.086696 CAATAGCCCACTTCACCACG 58.913 55.000 0.00 0.00 0.00 4.94
3204 10207 3.011818 TCCGTAGTCGCTCTTGTTCATA 58.988 45.455 0.00 0.00 35.54 2.15
3229 10235 2.897350 GCCGCTATGGGTGCTGAC 60.897 66.667 0.00 0.00 38.63 3.51
3240 10246 1.939934 GTTACATCAATGCAGCCGCTA 59.060 47.619 0.00 0.00 39.64 4.26
3245 10251 1.267532 CGTCCGTTACATCAATGCAGC 60.268 52.381 0.00 0.00 0.00 5.25
3249 10255 5.289917 TGTTGTATCGTCCGTTACATCAATG 59.710 40.000 14.50 0.00 32.08 2.82
3250 10256 5.290158 GTGTTGTATCGTCCGTTACATCAAT 59.710 40.000 16.85 0.00 34.54 2.57
3261 10267 4.451096 ACATGTTTGAGTGTTGTATCGTCC 59.549 41.667 0.00 0.00 0.00 4.79
3269 10275 5.333798 CGGTAACCTACATGTTTGAGTGTTG 60.334 44.000 2.30 0.00 0.00 3.33
3278 10284 1.348366 TGCACCGGTAACCTACATGTT 59.652 47.619 6.87 0.00 0.00 2.71
3283 10289 1.435577 CACTTGCACCGGTAACCTAC 58.564 55.000 6.87 0.00 0.00 3.18
3285 10291 1.599797 GCACTTGCACCGGTAACCT 60.600 57.895 6.87 0.00 41.59 3.50
3321 11126 7.122055 TGGTTAGCGATCTTCATAAATTTTGGT 59.878 33.333 0.00 0.00 0.00 3.67
3328 11133 8.609176 GTTTATGTGGTTAGCGATCTTCATAAA 58.391 33.333 0.00 0.00 35.56 1.40
3329 11134 7.766738 TGTTTATGTGGTTAGCGATCTTCATAA 59.233 33.333 0.00 0.00 0.00 1.90
3339 11144 4.927425 ACAGTAGTGTTTATGTGGTTAGCG 59.073 41.667 0.00 0.00 30.30 4.26
3356 11161 6.785488 TTATGAGCTTCAACACAACAGTAG 57.215 37.500 0.00 0.00 0.00 2.57
3358 11163 6.639632 AATTATGAGCTTCAACACAACAGT 57.360 33.333 0.00 0.00 0.00 3.55
3359 11164 6.919662 ACAAATTATGAGCTTCAACACAACAG 59.080 34.615 0.00 0.00 0.00 3.16
3361 11166 6.144402 CCACAAATTATGAGCTTCAACACAAC 59.856 38.462 0.00 0.00 0.00 3.32
3362 11167 6.215121 CCACAAATTATGAGCTTCAACACAA 58.785 36.000 0.00 0.00 0.00 3.33
3363 11168 5.771469 CCACAAATTATGAGCTTCAACACA 58.229 37.500 0.00 0.00 0.00 3.72
3364 11169 4.622740 GCCACAAATTATGAGCTTCAACAC 59.377 41.667 0.00 0.00 0.00 3.32
3365 11170 4.280425 TGCCACAAATTATGAGCTTCAACA 59.720 37.500 0.00 0.00 34.38 3.33
3366 11171 4.808558 TGCCACAAATTATGAGCTTCAAC 58.191 39.130 0.00 0.00 34.38 3.18
3369 11174 4.365723 CCATGCCACAAATTATGAGCTTC 58.634 43.478 0.00 0.00 34.38 3.86
3377 11182 3.643320 TGTTTGACCCATGCCACAAATTA 59.357 39.130 10.73 4.07 35.31 1.40
3382 11187 1.489481 TTTGTTTGACCCATGCCACA 58.511 45.000 0.00 0.00 0.00 4.17
3386 11191 3.615224 ATCCATTTGTTTGACCCATGC 57.385 42.857 0.00 0.00 0.00 4.06
3401 11206 7.116233 GCGATTTTCACAACAAAAACTATCCAT 59.884 33.333 0.00 0.00 0.00 3.41
3403 11208 6.419413 TGCGATTTTCACAACAAAAACTATCC 59.581 34.615 0.00 0.00 0.00 2.59
3410 11215 6.920210 TGATATGTGCGATTTTCACAACAAAA 59.080 30.769 0.00 0.00 46.07 2.44
3413 11218 5.181056 AGTGATATGTGCGATTTTCACAACA 59.819 36.000 10.32 0.00 46.07 3.33
3419 11224 5.030295 CCAACAGTGATATGTGCGATTTTC 58.970 41.667 0.00 0.00 32.52 2.29
3425 11230 2.862536 CTCTCCAACAGTGATATGTGCG 59.137 50.000 0.00 0.00 32.52 5.34
3430 11235 7.071069 TGCAATATCTCTCCAACAGTGATAT 57.929 36.000 0.00 1.92 44.77 1.63
3431 11236 6.484364 TGCAATATCTCTCCAACAGTGATA 57.516 37.500 0.00 0.00 40.35 2.15
3434 11239 6.051074 TGTATGCAATATCTCTCCAACAGTG 58.949 40.000 0.00 0.00 0.00 3.66
3436 11241 7.558161 TTTGTATGCAATATCTCTCCAACAG 57.442 36.000 0.00 0.00 34.18 3.16
3440 11245 7.498900 ACGAAATTTGTATGCAATATCTCTCCA 59.501 33.333 0.00 0.00 34.18 3.86
3441 11246 7.865707 ACGAAATTTGTATGCAATATCTCTCC 58.134 34.615 0.00 0.00 34.18 3.71
3447 11252 8.967218 GTGCAATACGAAATTTGTATGCAATAT 58.033 29.630 21.03 1.54 37.70 1.28
3448 11253 7.970614 TGTGCAATACGAAATTTGTATGCAATA 59.029 29.630 21.03 14.87 37.70 1.90
3469 11274 8.481314 AGTAAGATCTCTGATTATCTTTGTGCA 58.519 33.333 16.09 0.00 41.50 4.57
3471 11276 9.814899 ACAGTAAGATCTCTGATTATCTTTGTG 57.185 33.333 16.22 15.23 41.50 3.33
3472 11277 9.814899 CACAGTAAGATCTCTGATTATCTTTGT 57.185 33.333 16.22 13.33 41.50 2.83
3480 11285 9.757227 GTAAATAGCACAGTAAGATCTCTGATT 57.243 33.333 16.22 4.89 35.84 2.57
3516 11323 1.499368 TATCTGGCTGATGGCACTCA 58.501 50.000 16.17 0.00 44.10 3.41
3542 11355 4.103311 AGAAACTATTCTGGCAGATACCCC 59.897 45.833 19.50 5.03 44.25 4.95
3565 11378 6.294361 ACAACTGGTACATGTATAGCTTCA 57.706 37.500 9.18 1.26 38.20 3.02
3570 11383 6.465439 TGAGGACAACTGGTACATGTATAG 57.535 41.667 9.18 12.74 38.20 1.31
3579 11392 2.976185 TGTTCCATGAGGACAACTGGTA 59.024 45.455 0.00 0.00 45.73 3.25
3593 11406 3.316308 GGCGCTATTGAAATCTGTTCCAT 59.684 43.478 7.64 0.00 0.00 3.41
3614 11427 0.680618 TGGCTTGCATTTTCCTGTGG 59.319 50.000 0.00 0.00 0.00 4.17
3617 11430 2.825861 AGTTGGCTTGCATTTTCCTG 57.174 45.000 0.00 0.00 0.00 3.86
3618 11431 6.796785 ATAATAGTTGGCTTGCATTTTCCT 57.203 33.333 0.00 0.00 0.00 3.36
3664 11477 7.769044 AGCAGAAACCATAATACGTATGAACTT 59.231 33.333 9.24 0.00 42.07 2.66
3665 11478 7.272978 AGCAGAAACCATAATACGTATGAACT 58.727 34.615 9.24 0.00 42.07 3.01
3673 11486 8.873830 CCAAGATATAGCAGAAACCATAATACG 58.126 37.037 0.00 0.00 0.00 3.06
3680 11493 6.753913 ATCTCCAAGATATAGCAGAAACCA 57.246 37.500 0.00 0.00 32.12 3.67
3681 11494 9.732130 ATTTATCTCCAAGATATAGCAGAAACC 57.268 33.333 0.00 0.00 37.09 3.27
3697 11511 7.767198 CCCGTTTAAGTGAGTTATTTATCTCCA 59.233 37.037 0.00 0.00 0.00 3.86
3724 11539 6.205464 CCAATAGTAACACCTGCAATAGATGG 59.795 42.308 0.00 0.00 0.00 3.51
3729 11544 6.308015 AGTCCAATAGTAACACCTGCAATA 57.692 37.500 0.00 0.00 0.00 1.90
3755 11570 1.303888 AGAATGCCTGCACCACTGG 60.304 57.895 0.00 0.00 40.30 4.00
3914 11729 1.604278 GGGAGAATATCTTTGTGCCGC 59.396 52.381 0.00 0.00 0.00 6.53
4074 11889 3.733380 CGCTGATGAACTTGTCGATCTCT 60.733 47.826 0.00 0.00 0.00 3.10
4084 11899 1.205893 GGAGACCTCGCTGATGAACTT 59.794 52.381 0.00 0.00 0.00 2.66
4094 11909 0.523966 CGATAGGATGGAGACCTCGC 59.476 60.000 0.00 0.00 38.76 5.03
4143 11958 3.252701 CAGATTCTAGGCAACATCCATGC 59.747 47.826 0.00 0.00 43.08 4.06
4332 12165 3.351794 TGACGTCTCTGTGTAGGATCT 57.648 47.619 17.92 0.00 0.00 2.75
4427 12260 1.199558 GACTAGGTGTGTCTGGTCGAC 59.800 57.143 7.13 7.13 43.14 4.20
4589 12423 1.134699 CAGGTTCTGCTTCTCGCCATA 60.135 52.381 0.00 0.00 38.05 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.