Multiple sequence alignment - TraesCS3A01G439900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G439900 chr3A 100.000 4866 0 0 1 4866 682992749 682987884 0.000000e+00 8986.0
1 TraesCS3A01G439900 chr3A 81.698 530 87 7 3342 3866 683187708 683187184 2.690000e-117 433.0
2 TraesCS3A01G439900 chr3A 77.444 399 84 5 2506 2901 683188765 683188370 2.930000e-57 233.0
3 TraesCS3A01G439900 chr3B 93.416 2248 104 24 1834 4058 723152323 723150097 0.000000e+00 3291.0
4 TraesCS3A01G439900 chr3B 82.279 1834 134 94 1 1766 723154437 723152727 0.000000e+00 1410.0
5 TraesCS3A01G439900 chr3B 88.453 433 31 6 723 1139 723488306 723488735 5.620000e-139 505.0
6 TraesCS3A01G439900 chr3B 81.698 530 87 7 3342 3866 723444446 723443922 2.690000e-117 433.0
7 TraesCS3A01G439900 chr3B 78.392 398 82 4 2506 2901 723445397 723445002 6.250000e-64 255.0
8 TraesCS3A01G439900 chr3D 92.082 2286 106 36 1786 4030 546257292 546255041 0.000000e+00 3149.0
9 TraesCS3A01G439900 chr3D 88.633 783 51 14 983 1753 546258047 546257291 0.000000e+00 918.0
10 TraesCS3A01G439900 chr3D 81.320 985 78 49 1 955 546258949 546258041 0.000000e+00 702.0
11 TraesCS3A01G439900 chr3D 81.749 526 86 7 3346 3866 546331651 546331131 9.680000e-117 431.0
12 TraesCS3A01G439900 chr3D 77.543 521 115 2 3348 3867 546476096 546475577 3.660000e-81 313.0
13 TraesCS3A01G439900 chr3D 78.392 398 82 4 2506 2901 546332621 546332226 6.250000e-64 255.0
14 TraesCS3A01G439900 chr3D 86.391 169 19 3 4168 4334 546254912 546254746 1.080000e-41 182.0
15 TraesCS3A01G439900 chr3D 95.455 44 2 0 4103 4146 546253779 546253736 2.430000e-08 71.3
16 TraesCS3A01G439900 chr6B 90.069 433 24 5 723 1139 485865869 485866298 1.190000e-150 544.0
17 TraesCS3A01G439900 chr5D 88.684 433 26 6 723 1139 300761155 300761580 1.560000e-139 507.0
18 TraesCS3A01G439900 chr5D 86.765 68 4 4 4645 4707 266073257 266073190 2.430000e-08 71.3
19 TraesCS3A01G439900 chr5B 86.836 433 38 4 723 1139 345970886 345970457 2.650000e-127 466.0
20 TraesCS3A01G439900 chr5B 85.000 380 24 3 785 1134 355631312 355631688 5.990000e-94 355.0
21 TraesCS3A01G439900 chr2B 87.158 366 29 3 785 1135 769889156 769888794 2.730000e-107 399.0
22 TraesCS3A01G439900 chr2B 83.333 336 15 10 3640 3974 722833332 722833627 6.210000e-69 272.0
23 TraesCS3A01G439900 chr4A 86.792 371 30 4 785 1139 698792093 698791726 3.530000e-106 396.0
24 TraesCS3A01G439900 chr4A 94.937 79 4 0 4565 4643 134865488 134865566 1.840000e-24 124.0
25 TraesCS3A01G439900 chr7B 86.559 372 30 5 785 1139 74832717 74833085 4.570000e-105 392.0
26 TraesCS3A01G439900 chr7B 82.738 336 16 11 3640 3974 576424816 576425110 1.340000e-65 261.0
27 TraesCS3A01G439900 chr7B 88.542 96 9 2 4550 4643 3887194 3887289 1.110000e-21 115.0
28 TraesCS3A01G439900 chr1B 86.575 365 29 6 785 1134 604306799 604307158 7.640000e-103 385.0
29 TraesCS3A01G439900 chr5A 83.631 336 14 10 3640 3974 547635263 547634968 1.330000e-70 278.0
30 TraesCS3A01G439900 chr2A 95.000 80 4 0 4564 4643 391874307 391874386 5.110000e-25 126.0
31 TraesCS3A01G439900 chr2A 95.000 80 4 0 4564 4643 468295297 468295376 5.110000e-25 126.0
32 TraesCS3A01G439900 chr2A 90.110 91 7 2 4554 4642 470229276 470229366 3.080000e-22 117.0
33 TraesCS3A01G439900 chr1A 95.000 80 3 1 4564 4643 81291974 81291896 1.840000e-24 124.0
34 TraesCS3A01G439900 chr6A 92.045 88 5 1 4554 4639 14231716 14231629 6.610000e-24 122.0
35 TraesCS3A01G439900 chr6A 90.217 92 7 1 4554 4643 14134088 14133997 8.560000e-23 119.0
36 TraesCS3A01G439900 chr7A 91.765 85 6 1 4560 4643 691514270 691514186 3.080000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G439900 chr3A 682987884 682992749 4865 True 8986.00 8986 100.0000 1 4866 1 chr3A.!!$R1 4865
1 TraesCS3A01G439900 chr3A 683187184 683188765 1581 True 333.00 433 79.5710 2506 3866 2 chr3A.!!$R2 1360
2 TraesCS3A01G439900 chr3B 723150097 723154437 4340 True 2350.50 3291 87.8475 1 4058 2 chr3B.!!$R1 4057
3 TraesCS3A01G439900 chr3B 723443922 723445397 1475 True 344.00 433 80.0450 2506 3866 2 chr3B.!!$R2 1360
4 TraesCS3A01G439900 chr3D 546253736 546258949 5213 True 1004.46 3149 88.7762 1 4334 5 chr3D.!!$R2 4333
5 TraesCS3A01G439900 chr3D 546331131 546332621 1490 True 343.00 431 80.0705 2506 3866 2 chr3D.!!$R3 1360
6 TraesCS3A01G439900 chr3D 546475577 546476096 519 True 313.00 313 77.5430 3348 3867 1 chr3D.!!$R1 519


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.031314 TCGAGAATGAGAGCGGATGC 59.969 55.0 0.00 0.0 43.24 3.91 F
1174 1256 0.035056 CCGCCTTCTTCCATTCCTGT 60.035 55.0 0.00 0.0 0.00 4.00 F
1516 1602 0.029834 CAATAATGCACGCCTCCTGC 59.970 55.0 0.00 0.0 35.03 4.85 F
2263 2710 0.330604 ATGGTTGGTGAGCTGCTGAT 59.669 50.0 7.01 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1459 0.035439 ATTGGATGGAAGCGTCGGTT 60.035 50.000 9.85 9.85 0.00 4.44 R
3024 3728 0.251832 GCAGGATCCCCCTCTCGATA 60.252 60.000 8.55 0.00 45.60 2.92 R
3289 4038 3.179048 TCTCAACTTGCATCGTATGTCG 58.821 45.455 0.00 0.00 41.41 4.35 R
4058 4822 0.028902 ACAAAGAAAGTTGACGCCGC 59.971 50.000 0.00 0.00 32.59 6.53 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.813080 GACGGCCAGTAAACTAATCAAAT 57.187 39.130 2.24 0.00 0.00 2.32
23 24 5.807344 GACGGCCAGTAAACTAATCAAATC 58.193 41.667 2.24 0.00 0.00 2.17
24 25 4.331717 ACGGCCAGTAAACTAATCAAATCG 59.668 41.667 2.24 0.00 0.00 3.34
30 31 7.973944 GCCAGTAAACTAATCAAATCGGAAAAT 59.026 33.333 0.00 0.00 0.00 1.82
49 50 0.031314 TCGAGAATGAGAGCGGATGC 59.969 55.000 0.00 0.00 43.24 3.91
97 98 2.202690 CGTGGCCGATCGTAGCAA 60.203 61.111 15.09 1.36 35.63 3.91
99 100 1.153628 GTGGCCGATCGTAGCAAGT 60.154 57.895 15.09 0.00 0.00 3.16
100 101 0.101759 GTGGCCGATCGTAGCAAGTA 59.898 55.000 15.09 0.00 0.00 2.24
101 102 0.384309 TGGCCGATCGTAGCAAGTAG 59.616 55.000 15.09 0.00 0.00 2.57
102 103 0.940047 GGCCGATCGTAGCAAGTAGC 60.940 60.000 15.09 6.51 46.19 3.58
112 113 2.200052 GCAAGTAGCCGGTAGGAGT 58.800 57.895 1.90 0.00 41.02 3.85
113 114 1.396653 GCAAGTAGCCGGTAGGAGTA 58.603 55.000 1.90 0.00 41.02 2.59
114 115 1.337387 GCAAGTAGCCGGTAGGAGTAG 59.663 57.143 1.90 0.00 41.02 2.57
115 116 1.337387 CAAGTAGCCGGTAGGAGTAGC 59.663 57.143 1.90 0.00 41.02 3.58
116 117 0.549950 AGTAGCCGGTAGGAGTAGCA 59.450 55.000 1.90 0.00 41.02 3.49
117 118 1.145325 AGTAGCCGGTAGGAGTAGCAT 59.855 52.381 1.90 0.00 41.02 3.79
118 119 1.269998 GTAGCCGGTAGGAGTAGCATG 59.730 57.143 1.90 0.00 41.02 4.06
119 120 0.106167 AGCCGGTAGGAGTAGCATGA 60.106 55.000 1.90 0.00 41.02 3.07
120 121 0.969894 GCCGGTAGGAGTAGCATGAT 59.030 55.000 1.90 0.00 41.02 2.45
121 122 2.168496 GCCGGTAGGAGTAGCATGATA 58.832 52.381 1.90 0.00 41.02 2.15
122 123 2.561419 GCCGGTAGGAGTAGCATGATAA 59.439 50.000 1.90 0.00 41.02 1.75
123 124 3.195825 GCCGGTAGGAGTAGCATGATAAT 59.804 47.826 1.90 0.00 41.02 1.28
124 125 4.401519 GCCGGTAGGAGTAGCATGATAATA 59.598 45.833 1.90 0.00 41.02 0.98
125 126 5.450688 GCCGGTAGGAGTAGCATGATAATAG 60.451 48.000 1.90 0.00 41.02 1.73
126 127 5.652891 CCGGTAGGAGTAGCATGATAATAGT 59.347 44.000 0.00 0.00 41.02 2.12
127 128 6.827251 CCGGTAGGAGTAGCATGATAATAGTA 59.173 42.308 0.00 0.00 41.02 1.82
128 129 7.012515 CCGGTAGGAGTAGCATGATAATAGTAG 59.987 44.444 0.00 0.00 41.02 2.57
129 130 7.553402 CGGTAGGAGTAGCATGATAATAGTAGT 59.447 40.741 0.00 0.00 0.00 2.73
130 131 8.679100 GGTAGGAGTAGCATGATAATAGTAGTG 58.321 40.741 0.00 0.00 0.00 2.74
131 132 7.164230 AGGAGTAGCATGATAATAGTAGTGC 57.836 40.000 0.00 0.00 0.00 4.40
132 133 6.153680 AGGAGTAGCATGATAATAGTAGTGCC 59.846 42.308 0.00 0.00 33.29 5.01
198 199 1.668151 GACGTGCCGGAGAAAAGCT 60.668 57.895 5.05 0.00 0.00 3.74
201 202 1.338769 ACGTGCCGGAGAAAAGCTAAT 60.339 47.619 5.05 0.00 0.00 1.73
202 203 1.737793 CGTGCCGGAGAAAAGCTAATT 59.262 47.619 5.05 0.00 0.00 1.40
203 204 2.476185 CGTGCCGGAGAAAAGCTAATTG 60.476 50.000 5.05 0.00 0.00 2.32
204 205 2.488153 GTGCCGGAGAAAAGCTAATTGT 59.512 45.455 5.05 0.00 0.00 2.71
205 206 2.487762 TGCCGGAGAAAAGCTAATTGTG 59.512 45.455 5.05 0.00 0.00 3.33
234 243 1.238439 CATATTGGCATGGACGGGAC 58.762 55.000 0.00 0.00 0.00 4.46
247 256 4.421952 GGGACGAGAAGGAATCGC 57.578 61.111 0.00 0.00 43.91 4.58
269 278 2.677979 GGTTTGCGCCGGAGAAGAC 61.678 63.158 10.31 3.20 0.00 3.01
284 293 5.333721 CGGAGAAGACAAGAAAGAAAGAAGC 60.334 44.000 0.00 0.00 0.00 3.86
285 294 5.333721 GGAGAAGACAAGAAAGAAAGAAGCG 60.334 44.000 0.00 0.00 0.00 4.68
286 295 5.360591 AGAAGACAAGAAAGAAAGAAGCGA 58.639 37.500 0.00 0.00 0.00 4.93
287 296 5.465056 AGAAGACAAGAAAGAAAGAAGCGAG 59.535 40.000 0.00 0.00 0.00 5.03
290 299 4.698575 ACAAGAAAGAAAGAAGCGAGAGT 58.301 39.130 0.00 0.00 0.00 3.24
292 301 3.658709 AGAAAGAAAGAAGCGAGAGTGG 58.341 45.455 0.00 0.00 0.00 4.00
294 303 1.343069 AGAAAGAAGCGAGAGTGGGT 58.657 50.000 0.00 0.00 0.00 4.51
295 304 2.526432 AGAAAGAAGCGAGAGTGGGTA 58.474 47.619 0.00 0.00 0.00 3.69
296 305 2.231721 AGAAAGAAGCGAGAGTGGGTAC 59.768 50.000 0.00 0.00 0.00 3.34
297 306 0.526662 AAGAAGCGAGAGTGGGTACG 59.473 55.000 0.00 0.00 0.00 3.67
298 307 0.608582 AGAAGCGAGAGTGGGTACGT 60.609 55.000 0.00 0.00 0.00 3.57
299 308 1.089920 GAAGCGAGAGTGGGTACGTA 58.910 55.000 0.00 0.00 0.00 3.57
300 309 1.470098 GAAGCGAGAGTGGGTACGTAA 59.530 52.381 0.00 0.00 0.00 3.18
301 310 1.538047 AGCGAGAGTGGGTACGTAAA 58.462 50.000 0.00 0.00 0.00 2.01
302 311 1.200948 AGCGAGAGTGGGTACGTAAAC 59.799 52.381 0.00 0.00 0.00 2.01
444 482 1.234821 CTCTAGAGTCTAGCCAGCCG 58.765 60.000 20.60 0.00 0.00 5.52
445 483 0.179015 TCTAGAGTCTAGCCAGCCGG 60.179 60.000 20.60 0.00 0.00 6.13
459 497 2.915659 CCGGCCGGCCTCTACATA 60.916 66.667 41.01 0.00 0.00 2.29
460 498 2.338984 CGGCCGGCCTCTACATAC 59.661 66.667 41.01 13.75 0.00 2.39
461 499 2.201022 CGGCCGGCCTCTACATACT 61.201 63.158 41.01 0.00 0.00 2.12
462 500 0.892358 CGGCCGGCCTCTACATACTA 60.892 60.000 41.01 0.00 0.00 1.82
463 501 0.889306 GGCCGGCCTCTACATACTAG 59.111 60.000 38.76 0.00 0.00 2.57
464 502 1.547223 GGCCGGCCTCTACATACTAGA 60.547 57.143 38.76 0.00 0.00 2.43
465 503 1.540707 GCCGGCCTCTACATACTAGAC 59.459 57.143 18.11 0.00 0.00 2.59
466 504 2.161030 CCGGCCTCTACATACTAGACC 58.839 57.143 0.00 0.00 0.00 3.85
467 505 2.161030 CGGCCTCTACATACTAGACCC 58.839 57.143 0.00 0.00 0.00 4.46
468 506 2.224818 CGGCCTCTACATACTAGACCCT 60.225 54.545 0.00 0.00 0.00 4.34
469 507 3.423749 GGCCTCTACATACTAGACCCTC 58.576 54.545 0.00 0.00 0.00 4.30
470 508 3.074836 GGCCTCTACATACTAGACCCTCT 59.925 52.174 0.00 0.00 0.00 3.69
477 515 2.914695 TACTAGACCCTCTCTCTCGC 57.085 55.000 0.00 0.00 0.00 5.03
513 551 4.287781 TCGCGCGTTCAACCCAGA 62.288 61.111 30.98 2.41 0.00 3.86
514 552 4.072088 CGCGCGTTCAACCCAGAC 62.072 66.667 24.19 0.00 0.00 3.51
515 553 2.665185 GCGCGTTCAACCCAGACT 60.665 61.111 8.43 0.00 0.00 3.24
516 554 1.373748 GCGCGTTCAACCCAGACTA 60.374 57.895 8.43 0.00 0.00 2.59
517 555 1.352156 GCGCGTTCAACCCAGACTAG 61.352 60.000 8.43 0.00 0.00 2.57
518 556 0.242825 CGCGTTCAACCCAGACTAGA 59.757 55.000 0.00 0.00 0.00 2.43
519 557 1.711206 GCGTTCAACCCAGACTAGAC 58.289 55.000 0.00 0.00 0.00 2.59
520 558 1.272769 GCGTTCAACCCAGACTAGACT 59.727 52.381 0.00 0.00 0.00 3.24
521 559 2.490903 GCGTTCAACCCAGACTAGACTA 59.509 50.000 0.00 0.00 0.00 2.59
522 560 3.672781 GCGTTCAACCCAGACTAGACTAC 60.673 52.174 0.00 0.00 0.00 2.73
523 561 3.119566 CGTTCAACCCAGACTAGACTACC 60.120 52.174 0.00 0.00 0.00 3.18
524 562 3.097342 TCAACCCAGACTAGACTACCC 57.903 52.381 0.00 0.00 0.00 3.69
525 563 2.380932 TCAACCCAGACTAGACTACCCA 59.619 50.000 0.00 0.00 0.00 4.51
526 564 2.496470 CAACCCAGACTAGACTACCCAC 59.504 54.545 0.00 0.00 0.00 4.61
577 615 4.781934 AGGAGTTGTATATTTCCCACTGC 58.218 43.478 0.00 0.00 0.00 4.40
607 657 3.257561 CTTGACCTCATCGCCGCG 61.258 66.667 6.39 6.39 0.00 6.46
657 707 1.407437 CCCCATCCCTTTGTCTTCTCG 60.407 57.143 0.00 0.00 0.00 4.04
748 798 2.579738 GCTTGAGAGGGACGGTCC 59.420 66.667 19.06 19.06 35.23 4.46
764 814 3.716006 CCAACGCACGCTGACAGG 61.716 66.667 4.26 0.00 0.00 4.00
800 850 0.665298 GGGCTAGCAATAGCAAGCAC 59.335 55.000 18.24 0.00 44.51 4.40
808 858 0.676782 AATAGCAAGCACCACCGACC 60.677 55.000 0.00 0.00 0.00 4.79
883 962 4.399395 CTCCAGCTTGCGCCCTGA 62.399 66.667 17.91 6.59 36.60 3.86
898 977 4.742201 TGAGCAGCGGCCGTCTTC 62.742 66.667 28.70 18.13 42.56 2.87
1030 1112 4.647615 CCAGGCCGTCCGCGATAG 62.648 72.222 8.23 0.00 41.33 2.08
1171 1253 0.541863 TCTCCGCCTTCTTCCATTCC 59.458 55.000 0.00 0.00 0.00 3.01
1174 1256 0.035056 CCGCCTTCTTCCATTCCTGT 60.035 55.000 0.00 0.00 0.00 4.00
1180 1262 3.308402 CCTTCTTCCATTCCTGTGCCTTA 60.308 47.826 0.00 0.00 0.00 2.69
1183 1265 0.255890 TCCATTCCTGTGCCTTAGCC 59.744 55.000 0.00 0.00 38.69 3.93
1264 1346 0.183731 ATTCAGATTTCCCCCGCTCC 59.816 55.000 0.00 0.00 0.00 4.70
1265 1347 2.203070 CAGATTTCCCCCGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1266 1348 4.176752 AGATTTCCCCCGCTCCGC 62.177 66.667 0.00 0.00 0.00 5.54
1370 1456 2.765689 AGCTAGCTACATCTGTCCCT 57.234 50.000 17.69 0.00 0.00 4.20
1373 1459 2.950781 CTAGCTACATCTGTCCCTCCA 58.049 52.381 0.00 0.00 0.00 3.86
1383 1469 2.920912 TCCCTCCAACCGACGCTT 60.921 61.111 0.00 0.00 0.00 4.68
1394 1480 0.657840 CCGACGCTTCCATCCAATTC 59.342 55.000 0.00 0.00 0.00 2.17
1507 1593 1.202879 TCCCCGGGATCAATAATGCAC 60.203 52.381 26.32 0.00 0.00 4.57
1516 1602 0.029834 CAATAATGCACGCCTCCTGC 59.970 55.000 0.00 0.00 35.03 4.85
1520 1606 3.057548 TGCACGCCTCCTGCATTG 61.058 61.111 0.00 0.00 39.76 2.82
1521 1607 4.487412 GCACGCCTCCTGCATTGC 62.487 66.667 0.46 0.46 40.32 3.56
1524 1610 3.063704 CGCCTCCTGCATTGCCAA 61.064 61.111 6.12 0.00 41.33 4.52
1586 1680 4.143333 CGGTACCGGACAGGCAGG 62.143 72.222 27.00 0.00 46.52 4.85
1657 1754 1.474077 GCCACCAATTCTCGAAGCAAT 59.526 47.619 0.00 0.00 0.00 3.56
1660 1757 2.749076 CACCAATTCTCGAAGCAATCCA 59.251 45.455 0.00 0.00 0.00 3.41
1698 1795 3.869065 TCAGTACCACCGAATTCATTCC 58.131 45.455 6.22 0.00 33.28 3.01
1701 1798 2.420058 ACCACCGAATTCATTCCCTC 57.580 50.000 6.22 0.00 33.28 4.30
1702 1799 1.916181 ACCACCGAATTCATTCCCTCT 59.084 47.619 6.22 0.00 33.28 3.69
1703 1800 2.092914 ACCACCGAATTCATTCCCTCTC 60.093 50.000 6.22 0.00 33.28 3.20
1704 1801 2.565841 CACCGAATTCATTCCCTCTCC 58.434 52.381 6.22 0.00 33.28 3.71
1705 1802 1.139058 ACCGAATTCATTCCCTCTCCG 59.861 52.381 6.22 0.00 33.28 4.63
1706 1803 1.412710 CCGAATTCATTCCCTCTCCGA 59.587 52.381 6.22 0.00 33.28 4.55
1707 1804 2.474816 CGAATTCATTCCCTCTCCGAC 58.525 52.381 6.22 0.00 33.28 4.79
1708 1805 2.474816 GAATTCATTCCCTCTCCGACG 58.525 52.381 0.00 0.00 0.00 5.12
1714 1814 1.310933 TTCCCTCTCCGACGCTACAC 61.311 60.000 0.00 0.00 0.00 2.90
1727 1827 2.259618 CGCTACACACATCAGTACACC 58.740 52.381 0.00 0.00 0.00 4.16
1762 1862 1.482278 GTTCTCGAGACGCCATGATC 58.518 55.000 16.36 0.00 0.00 2.92
1766 1866 0.598419 TCGAGACGCCATGATCATGC 60.598 55.000 27.24 20.84 37.49 4.06
1767 1867 1.563435 CGAGACGCCATGATCATGCC 61.563 60.000 27.24 17.65 37.49 4.40
1768 1868 1.563435 GAGACGCCATGATCATGCCG 61.563 60.000 30.94 30.94 44.10 5.69
1769 1869 2.190313 ACGCCATGATCATGCCGT 59.810 55.556 32.17 32.17 46.10 5.68
1770 1870 2.635338 CGCCATGATCATGCCGTG 59.365 61.111 26.25 17.83 35.29 4.94
1771 1871 2.333938 GCCATGATCATGCCGTGC 59.666 61.111 27.24 21.05 37.49 5.34
1772 1872 3.036577 CCATGATCATGCCGTGCC 58.963 61.111 27.24 0.00 37.49 5.01
1773 1873 2.558286 CCATGATCATGCCGTGCCC 61.558 63.158 27.24 0.00 37.49 5.36
1774 1874 1.527611 CATGATCATGCCGTGCCCT 60.528 57.895 22.20 0.00 31.39 5.19
1775 1875 1.228063 ATGATCATGCCGTGCCCTC 60.228 57.895 7.59 0.00 0.00 4.30
1776 1876 1.986632 ATGATCATGCCGTGCCCTCA 61.987 55.000 7.59 0.00 0.00 3.86
1777 1877 1.228063 GATCATGCCGTGCCCTCAT 60.228 57.895 0.00 0.00 0.00 2.90
1778 1878 1.228063 ATCATGCCGTGCCCTCATC 60.228 57.895 0.00 0.00 0.00 2.92
1779 1879 2.687418 ATCATGCCGTGCCCTCATCC 62.687 60.000 0.00 0.00 0.00 3.51
1780 1880 3.410628 ATGCCGTGCCCTCATCCA 61.411 61.111 0.00 0.00 0.00 3.41
1781 1881 3.704231 ATGCCGTGCCCTCATCCAC 62.704 63.158 0.00 0.00 0.00 4.02
1783 1883 3.716195 CCGTGCCCTCATCCACCA 61.716 66.667 0.00 0.00 0.00 4.17
1784 1884 2.436646 CGTGCCCTCATCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
1951 2387 0.739813 CTGTACCTAACCCGCACAGC 60.740 60.000 0.00 0.00 31.14 4.40
1996 2432 0.806492 GGACGCAAAGATCCGGAGAC 60.806 60.000 11.34 6.83 0.00 3.36
2134 2571 0.599204 ACCTGACGTGCTAACAACCG 60.599 55.000 0.00 0.00 0.00 4.44
2153 2590 3.056749 ACCGCCGCATTGGTTATTAAAAA 60.057 39.130 0.00 0.00 41.21 1.94
2243 2690 1.269465 TGTAGCATCTGAGCAGATCGC 60.269 52.381 18.61 18.61 45.78 4.58
2263 2710 0.330604 ATGGTTGGTGAGCTGCTGAT 59.669 50.000 7.01 0.00 0.00 2.90
2299 2749 1.785041 TTTCGCACCAACTGCTGCTC 61.785 55.000 0.00 0.00 44.64 4.26
2321 2771 6.512415 GCTCATCTGTTCATAACATAAGTGGC 60.512 42.308 0.00 0.00 41.26 5.01
2330 2780 7.151999 TCATAACATAAGTGGCGATTTTGTT 57.848 32.000 12.40 12.40 36.33 2.83
2374 2824 5.067805 CCATGCATGATTATCCATCCATCAG 59.932 44.000 28.31 0.74 30.52 2.90
2390 2840 4.118410 CCATCAGTTTCTCCTCAGAATCG 58.882 47.826 0.00 0.00 38.50 3.34
2433 2899 7.349412 ACTGAAACTAGTTCTACAGAAGTGT 57.651 36.000 27.94 13.94 38.13 3.55
2446 2915 5.637006 ACAGAAGTGTCATCTCTGTACTC 57.363 43.478 14.82 0.00 39.53 2.59
2468 2944 6.135290 TCCACATTTTGAGACAGTTTGAAG 57.865 37.500 0.00 0.00 0.00 3.02
2634 3110 1.739067 GGTGCCTCTACCACATGTTC 58.261 55.000 0.00 0.00 40.54 3.18
2877 3353 0.469917 TCCTCGCTCCCCATGATTTC 59.530 55.000 0.00 0.00 0.00 2.17
2921 3411 2.156917 ACACCACTGACATGAATGCTG 58.843 47.619 0.00 0.00 0.00 4.41
2923 3413 0.454600 CCACTGACATGAATGCTGCC 59.545 55.000 0.00 0.00 0.00 4.85
2977 3660 7.425577 TGTCTGAATGAACAACATACTGAAG 57.574 36.000 0.00 0.00 38.38 3.02
2978 3661 7.216494 TGTCTGAATGAACAACATACTGAAGA 58.784 34.615 0.00 0.00 38.38 2.87
2981 3664 8.724229 TCTGAATGAACAACATACTGAAGAATG 58.276 33.333 0.00 0.00 38.38 2.67
2982 3665 8.620116 TGAATGAACAACATACTGAAGAATGA 57.380 30.769 0.00 0.00 38.38 2.57
2985 3668 9.683069 AATGAACAACATACTGAAGAATGAAAC 57.317 29.630 0.00 0.00 38.38 2.78
2987 3670 8.128582 TGAACAACATACTGAAGAATGAAACAC 58.871 33.333 0.00 0.00 0.00 3.32
2988 3671 7.566760 ACAACATACTGAAGAATGAAACACA 57.433 32.000 0.00 0.00 0.00 3.72
2989 3672 7.995289 ACAACATACTGAAGAATGAAACACAA 58.005 30.769 0.00 0.00 0.00 3.33
2990 3673 8.465999 ACAACATACTGAAGAATGAAACACAAA 58.534 29.630 0.00 0.00 0.00 2.83
2991 3674 9.467258 CAACATACTGAAGAATGAAACACAAAT 57.533 29.630 0.00 0.00 0.00 2.32
2992 3675 9.467258 AACATACTGAAGAATGAAACACAAATG 57.533 29.630 0.00 0.00 0.00 2.32
3024 3728 0.341258 TCATTCAGGAGGAGAGGGCT 59.659 55.000 0.00 0.00 0.00 5.19
3289 4038 3.990469 CACTATTGGCGGACATGTAGATC 59.010 47.826 0.00 0.00 0.00 2.75
3293 4042 0.384309 GGCGGACATGTAGATCGACA 59.616 55.000 11.25 11.25 0.00 4.35
3344 4102 2.699846 TGTGGATGATGATGGACGATGA 59.300 45.455 0.00 0.00 0.00 2.92
3942 4701 3.504134 TCTTCAGAGTTCAGAAGACCTCG 59.496 47.826 11.51 0.00 41.52 4.63
3945 4704 1.073768 GAGTTCAGAAGACCTCGCGC 61.074 60.000 0.00 0.00 0.00 6.86
3957 4716 1.515521 CCTCGCGCCCTGTTCTTTTT 61.516 55.000 0.00 0.00 0.00 1.94
4015 4779 1.263217 CACGGCCACTTTTGAGTGTAC 59.737 52.381 2.24 0.00 38.07 2.90
4058 4822 1.859703 GAGATGTGATGAGAAGCAGCG 59.140 52.381 0.00 0.00 35.09 5.18
4059 4823 0.304098 GATGTGATGAGAAGCAGCGC 59.696 55.000 0.00 0.00 43.41 5.92
4060 4824 1.426816 ATGTGATGAGAAGCAGCGCG 61.427 55.000 0.00 0.00 45.93 6.86
4061 4825 2.510012 TGATGAGAAGCAGCGCGG 60.510 61.111 8.83 2.11 35.09 6.46
4062 4826 3.934684 GATGAGAAGCAGCGCGGC 61.935 66.667 25.52 25.52 0.00 6.53
4072 4836 3.712881 AGCGCGGCGTCAACTTTC 61.713 61.111 24.46 4.18 0.00 2.62
4073 4837 3.712881 GCGCGGCGTCAACTTTCT 61.713 61.111 24.46 0.00 0.00 2.52
4074 4838 2.935955 CGCGGCGTCAACTTTCTT 59.064 55.556 15.36 0.00 0.00 2.52
4075 4839 1.278637 CGCGGCGTCAACTTTCTTT 59.721 52.632 15.36 0.00 0.00 2.52
4076 4840 0.991770 CGCGGCGTCAACTTTCTTTG 60.992 55.000 15.36 0.00 0.00 2.77
4079 4843 2.661979 GCGGCGTCAACTTTCTTTGTAG 60.662 50.000 9.37 0.00 0.00 2.74
4080 4844 2.542595 CGGCGTCAACTTTCTTTGTAGT 59.457 45.455 0.00 0.00 0.00 2.73
4081 4845 3.603857 CGGCGTCAACTTTCTTTGTAGTG 60.604 47.826 0.00 0.00 0.00 2.74
4083 4847 4.271687 GCGTCAACTTTCTTTGTAGTGTG 58.728 43.478 0.00 0.00 0.00 3.82
4085 4849 5.005971 GCGTCAACTTTCTTTGTAGTGTGTA 59.994 40.000 0.00 0.00 0.00 2.90
4086 4850 6.637365 CGTCAACTTTCTTTGTAGTGTGTAG 58.363 40.000 0.00 0.00 0.00 2.74
4087 4851 6.255020 CGTCAACTTTCTTTGTAGTGTGTAGT 59.745 38.462 0.00 0.00 0.00 2.73
4089 4853 9.257651 GTCAACTTTCTTTGTAGTGTGTAGTAT 57.742 33.333 0.00 0.00 0.00 2.12
4091 4855 8.495949 CAACTTTCTTTGTAGTGTGTAGTATGG 58.504 37.037 0.00 0.00 0.00 2.74
4092 4856 7.732996 ACTTTCTTTGTAGTGTGTAGTATGGT 58.267 34.615 0.00 0.00 0.00 3.55
4093 4857 8.208903 ACTTTCTTTGTAGTGTGTAGTATGGTT 58.791 33.333 0.00 0.00 0.00 3.67
4096 4860 6.926826 TCTTTGTAGTGTGTAGTATGGTTGTG 59.073 38.462 0.00 0.00 0.00 3.33
4099 4863 4.079980 AGTGTGTAGTATGGTTGTGCAA 57.920 40.909 0.00 0.00 0.00 4.08
4101 4865 4.274950 AGTGTGTAGTATGGTTGTGCAAAC 59.725 41.667 0.00 0.00 0.00 2.93
4103 4867 3.495377 GTGTAGTATGGTTGTGCAAACGA 59.505 43.478 0.00 0.00 0.00 3.85
4105 4869 4.757657 TGTAGTATGGTTGTGCAAACGAAT 59.242 37.500 0.00 0.00 0.00 3.34
4106 4870 4.846779 AGTATGGTTGTGCAAACGAATT 57.153 36.364 0.00 0.00 0.00 2.17
4108 4872 2.500509 TGGTTGTGCAAACGAATTCC 57.499 45.000 0.00 0.00 0.00 3.01
4109 4873 1.067821 TGGTTGTGCAAACGAATTCCC 59.932 47.619 0.00 0.00 0.00 3.97
4110 4874 1.339929 GGTTGTGCAAACGAATTCCCT 59.660 47.619 0.00 0.00 0.00 4.20
4113 4877 3.810310 TGTGCAAACGAATTCCCTTTT 57.190 38.095 0.00 0.00 0.00 2.27
4116 4880 6.576662 TGTGCAAACGAATTCCCTTTTATA 57.423 33.333 0.00 0.00 0.00 0.98
4117 4881 6.616947 TGTGCAAACGAATTCCCTTTTATAG 58.383 36.000 0.00 0.00 0.00 1.31
4120 4892 5.270853 CAAACGAATTCCCTTTTATAGCCG 58.729 41.667 0.00 0.00 0.00 5.52
4131 4903 0.313043 TTATAGCCGCCGTCTGCTAC 59.687 55.000 0.00 0.00 42.43 3.58
4140 4912 3.301352 CGTCTGCTACGCTAACGAA 57.699 52.632 0.00 0.00 46.10 3.85
4141 4913 0.905839 CGTCTGCTACGCTAACGAAC 59.094 55.000 0.00 0.00 46.10 3.95
4155 4927 1.571919 ACGAACTTGACAGTGCTGAC 58.428 50.000 6.17 0.34 31.60 3.51
4156 4928 1.137086 ACGAACTTGACAGTGCTGACT 59.863 47.619 6.17 0.00 31.60 3.41
4189 4961 4.470334 ACAGAGAAGAAAGAGAGATGGC 57.530 45.455 0.00 0.00 0.00 4.40
4206 4978 2.507484 TGGCAGTTTCCATCTGAGTTG 58.493 47.619 0.00 0.00 35.20 3.16
4215 4987 1.606480 CCATCTGAGTTGTGACGCACT 60.606 52.381 10.54 0.00 35.11 4.40
4221 4993 1.201825 GTTGTGACGCACTCGAAGC 59.798 57.895 10.54 0.00 39.41 3.86
4229 5001 1.790387 GCACTCGAAGCAGCGAATT 59.210 52.632 4.76 0.00 40.13 2.17
4230 5002 0.247458 GCACTCGAAGCAGCGAATTC 60.247 55.000 4.76 0.00 40.13 2.17
4231 5003 1.070821 CACTCGAAGCAGCGAATTCA 58.929 50.000 6.22 0.00 40.13 2.57
4232 5004 1.662629 CACTCGAAGCAGCGAATTCAT 59.337 47.619 6.22 0.00 40.13 2.57
4233 5005 1.929836 ACTCGAAGCAGCGAATTCATC 59.070 47.619 6.22 0.00 40.13 2.92
4234 5006 1.929169 CTCGAAGCAGCGAATTCATCA 59.071 47.619 6.22 0.00 40.13 3.07
4235 5007 1.929169 TCGAAGCAGCGAATTCATCAG 59.071 47.619 6.22 0.00 37.35 2.90
4236 5008 1.004185 CGAAGCAGCGAATTCATCAGG 60.004 52.381 6.22 0.00 0.00 3.86
4237 5009 1.332997 GAAGCAGCGAATTCATCAGGG 59.667 52.381 6.22 0.00 0.00 4.45
4238 5010 0.465097 AGCAGCGAATTCATCAGGGG 60.465 55.000 6.22 0.00 0.00 4.79
4268 5041 2.223782 TGATGCAGGTTTCACACAAAGC 60.224 45.455 0.00 0.00 0.00 3.51
4278 5051 5.284079 GTTTCACACAAAGCATCACATTCT 58.716 37.500 0.00 0.00 0.00 2.40
4279 5052 4.754372 TCACACAAAGCATCACATTCTC 57.246 40.909 0.00 0.00 0.00 2.87
4281 5054 3.253921 CACACAAAGCATCACATTCTCCA 59.746 43.478 0.00 0.00 0.00 3.86
4314 5087 8.823818 TGTTAACTTAAGCTGTTACTCAAGAAC 58.176 33.333 7.22 0.00 30.70 3.01
4315 5088 8.823818 GTTAACTTAAGCTGTTACTCAAGAACA 58.176 33.333 1.29 0.00 35.55 3.18
4334 5107 9.421806 CAAGAACAGATCCTGATACAAGATATC 57.578 37.037 0.45 0.00 35.18 1.63
4335 5108 7.825681 AGAACAGATCCTGATACAAGATATCG 58.174 38.462 0.45 0.00 35.18 2.92
4337 5110 5.420421 ACAGATCCTGATACAAGATATCGGG 59.580 44.000 13.54 13.54 46.79 5.14
4341 5114 4.044191 TCCTGATACAAGATATCGGGGAGA 59.956 45.833 17.79 1.19 45.91 3.71
4345 5118 5.419155 TGATACAAGATATCGGGGAGATGTC 59.581 44.000 0.00 0.00 44.73 3.06
4361 5168 0.884259 TGTCGGGTGCAACATGTGAG 60.884 55.000 3.06 0.00 39.98 3.51
4362 5169 1.965930 TCGGGTGCAACATGTGAGC 60.966 57.895 14.72 14.72 39.98 4.26
4370 5177 2.032117 TGCAACATGTGAGCGTACAAAG 60.032 45.455 16.05 0.25 33.69 2.77
4379 5186 0.679505 AGCGTACAAAGCCTGAGACA 59.320 50.000 0.00 0.00 34.64 3.41
4392 5199 3.257393 CCTGAGACAAACAATCGGAGAG 58.743 50.000 0.00 0.00 43.63 3.20
4408 5215 2.685388 GGAGAGCTGAAAGGCATAAACC 59.315 50.000 0.00 0.00 34.17 3.27
4409 5216 3.347216 GAGAGCTGAAAGGCATAAACCA 58.653 45.455 0.00 0.00 34.17 3.67
4411 5218 3.009473 AGAGCTGAAAGGCATAAACCAGA 59.991 43.478 0.00 0.00 34.17 3.86
4417 5224 5.569355 TGAAAGGCATAAACCAGATTCAGA 58.431 37.500 0.00 0.00 30.45 3.27
4420 5227 8.000709 TGAAAGGCATAAACCAGATTCAGATAT 58.999 33.333 0.00 0.00 30.45 1.63
4421 5228 7.992754 AAGGCATAAACCAGATTCAGATATC 57.007 36.000 0.00 0.00 0.00 1.63
4422 5229 6.169094 AGGCATAAACCAGATTCAGATATCG 58.831 40.000 0.00 0.00 0.00 2.92
4427 5234 9.655769 CATAAACCAGATTCAGATATCGTTTTG 57.344 33.333 0.00 0.00 0.00 2.44
4453 5260 9.825972 GTTTGAATGATTCTTCGATAAACAAGA 57.174 29.630 6.73 0.00 0.00 3.02
4464 5271 9.435688 TCTTCGATAAACAAGAATCTGAATTGA 57.564 29.630 7.38 0.00 0.00 2.57
4465 5272 9.699985 CTTCGATAAACAAGAATCTGAATTGAG 57.300 33.333 7.38 0.00 0.00 3.02
4467 5274 8.873830 TCGATAAACAAGAATCTGAATTGAGTC 58.126 33.333 7.38 0.00 0.00 3.36
4468 5275 8.877779 CGATAAACAAGAATCTGAATTGAGTCT 58.122 33.333 7.38 0.00 42.23 3.24
4469 5276 9.985318 GATAAACAAGAATCTGAATTGAGTCTG 57.015 33.333 7.38 0.00 39.98 3.51
4471 5278 8.455903 AAACAAGAATCTGAATTGAGTCTGAA 57.544 30.769 7.38 0.00 39.98 3.02
4472 5279 7.670009 ACAAGAATCTGAATTGAGTCTGAAG 57.330 36.000 7.38 0.00 39.98 3.02
4473 5280 6.149142 ACAAGAATCTGAATTGAGTCTGAAGC 59.851 38.462 7.38 0.00 39.98 3.86
4474 5281 4.869297 AGAATCTGAATTGAGTCTGAAGCG 59.131 41.667 0.00 0.00 39.50 4.68
4475 5282 3.942130 TCTGAATTGAGTCTGAAGCGA 57.058 42.857 0.00 0.00 0.00 4.93
4476 5283 3.579709 TCTGAATTGAGTCTGAAGCGAC 58.420 45.455 0.00 0.00 0.00 5.19
4477 5284 3.005791 TCTGAATTGAGTCTGAAGCGACA 59.994 43.478 0.00 0.00 36.38 4.35
4478 5285 3.727726 TGAATTGAGTCTGAAGCGACAA 58.272 40.909 0.00 0.00 36.38 3.18
4479 5286 3.742882 TGAATTGAGTCTGAAGCGACAAG 59.257 43.478 0.00 0.00 36.38 3.16
4480 5287 3.667497 ATTGAGTCTGAAGCGACAAGA 57.333 42.857 0.00 0.00 36.38 3.02
4482 5289 3.018598 TGAGTCTGAAGCGACAAGAAG 57.981 47.619 0.00 0.00 36.38 2.85
4483 5290 2.623416 TGAGTCTGAAGCGACAAGAAGA 59.377 45.455 0.00 0.00 36.38 2.87
4484 5291 3.256879 TGAGTCTGAAGCGACAAGAAGAT 59.743 43.478 0.00 0.00 36.38 2.40
4486 5293 4.739195 AGTCTGAAGCGACAAGAAGATAC 58.261 43.478 0.00 0.00 36.38 2.24
4487 5294 4.461081 AGTCTGAAGCGACAAGAAGATACT 59.539 41.667 0.00 0.00 36.38 2.12
4488 5295 4.560819 GTCTGAAGCGACAAGAAGATACTG 59.439 45.833 0.00 0.00 34.11 2.74
4492 5303 2.232452 AGCGACAAGAAGATACTGCAGT 59.768 45.455 25.12 25.12 0.00 4.40
4495 5306 4.237724 CGACAAGAAGATACTGCAGTGAA 58.762 43.478 29.57 11.06 0.00 3.18
4502 5313 5.931146 AGAAGATACTGCAGTGAAGTGAAAG 59.069 40.000 29.57 0.00 0.00 2.62
4505 5316 1.133976 ACTGCAGTGAAGTGAAAGGCT 60.134 47.619 20.97 0.00 0.00 4.58
4511 5322 4.107622 CAGTGAAGTGAAAGGCTTTGTTG 58.892 43.478 18.79 0.46 0.00 3.33
4514 5325 4.327087 GTGAAGTGAAAGGCTTTGTTGTTG 59.673 41.667 18.79 0.00 0.00 3.33
4515 5326 4.021544 TGAAGTGAAAGGCTTTGTTGTTGT 60.022 37.500 18.79 0.00 0.00 3.32
4528 5339 2.223595 TGTTGTTGTACGGGTTTGCATG 60.224 45.455 0.00 0.00 0.00 4.06
4529 5340 0.312416 TGTTGTACGGGTTTGCATGC 59.688 50.000 11.82 11.82 0.00 4.06
4530 5341 0.312416 GTTGTACGGGTTTGCATGCA 59.688 50.000 18.46 18.46 0.00 3.96
4531 5342 1.067915 GTTGTACGGGTTTGCATGCAT 60.068 47.619 23.37 7.94 0.00 3.96
4532 5343 2.115343 TGTACGGGTTTGCATGCATA 57.885 45.000 23.37 14.80 0.00 3.14
4533 5344 1.740585 TGTACGGGTTTGCATGCATAC 59.259 47.619 27.13 27.13 0.00 2.39
4534 5345 1.064952 GTACGGGTTTGCATGCATACC 59.935 52.381 37.82 37.82 43.96 2.73
4535 5346 0.323360 ACGGGTTTGCATGCATACCT 60.323 50.000 40.70 28.46 44.08 3.08
4543 5354 2.917933 TGCATGCATACCTACCTGAAC 58.082 47.619 18.46 0.00 0.00 3.18
4544 5355 2.505407 TGCATGCATACCTACCTGAACT 59.495 45.455 18.46 0.00 0.00 3.01
4545 5356 3.709141 TGCATGCATACCTACCTGAACTA 59.291 43.478 18.46 0.00 0.00 2.24
4558 5369 1.824852 CTGAACTATGGGGCCAAAACC 59.175 52.381 4.39 0.00 0.00 3.27
4559 5370 1.431243 TGAACTATGGGGCCAAAACCT 59.569 47.619 4.39 0.00 0.00 3.50
4561 5372 2.713828 ACTATGGGGCCAAAACCTTT 57.286 45.000 4.39 0.00 0.00 3.11
4567 5378 1.021202 GGGCCAAAACCTTTGCAAAC 58.979 50.000 8.05 0.00 0.00 2.93
4568 5379 1.408127 GGGCCAAAACCTTTGCAAACT 60.408 47.619 8.05 0.00 0.00 2.66
4569 5380 2.158885 GGGCCAAAACCTTTGCAAACTA 60.159 45.455 8.05 0.00 0.00 2.24
4570 5381 2.869801 GGCCAAAACCTTTGCAAACTAC 59.130 45.455 8.05 0.00 0.00 2.73
4571 5382 3.431626 GGCCAAAACCTTTGCAAACTACT 60.432 43.478 8.05 0.00 0.00 2.57
4572 5383 3.802139 GCCAAAACCTTTGCAAACTACTC 59.198 43.478 8.05 0.00 0.00 2.59
4573 5384 4.368315 CCAAAACCTTTGCAAACTACTCC 58.632 43.478 8.05 0.00 0.00 3.85
4574 5385 4.368315 CAAAACCTTTGCAAACTACTCCC 58.632 43.478 8.05 0.00 0.00 4.30
4575 5386 3.595190 AACCTTTGCAAACTACTCCCT 57.405 42.857 8.05 0.00 0.00 4.20
4576 5387 3.141767 ACCTTTGCAAACTACTCCCTC 57.858 47.619 8.05 0.00 0.00 4.30
4577 5388 2.711547 ACCTTTGCAAACTACTCCCTCT 59.288 45.455 8.05 0.00 0.00 3.69
4578 5389 3.077359 CCTTTGCAAACTACTCCCTCTG 58.923 50.000 8.05 0.00 0.00 3.35
4579 5390 3.496870 CCTTTGCAAACTACTCCCTCTGT 60.497 47.826 8.05 0.00 0.00 3.41
4580 5391 3.857157 TTGCAAACTACTCCCTCTGTT 57.143 42.857 0.00 0.00 0.00 3.16
4581 5392 3.402628 TGCAAACTACTCCCTCTGTTC 57.597 47.619 0.00 0.00 0.00 3.18
4582 5393 2.038557 TGCAAACTACTCCCTCTGTTCC 59.961 50.000 0.00 0.00 0.00 3.62
4583 5394 2.038557 GCAAACTACTCCCTCTGTTCCA 59.961 50.000 0.00 0.00 0.00 3.53
4584 5395 3.496160 GCAAACTACTCCCTCTGTTCCAA 60.496 47.826 0.00 0.00 0.00 3.53
4585 5396 4.714632 CAAACTACTCCCTCTGTTCCAAA 58.285 43.478 0.00 0.00 0.00 3.28
4586 5397 5.316987 CAAACTACTCCCTCTGTTCCAAAT 58.683 41.667 0.00 0.00 0.00 2.32
4587 5398 5.584551 AACTACTCCCTCTGTTCCAAATT 57.415 39.130 0.00 0.00 0.00 1.82
4588 5399 6.697641 AACTACTCCCTCTGTTCCAAATTA 57.302 37.500 0.00 0.00 0.00 1.40
4589 5400 6.051179 ACTACTCCCTCTGTTCCAAATTAC 57.949 41.667 0.00 0.00 0.00 1.89
4590 5401 5.785940 ACTACTCCCTCTGTTCCAAATTACT 59.214 40.000 0.00 0.00 0.00 2.24
4591 5402 5.167303 ACTCCCTCTGTTCCAAATTACTC 57.833 43.478 0.00 0.00 0.00 2.59
4592 5403 4.184629 CTCCCTCTGTTCCAAATTACTCG 58.815 47.826 0.00 0.00 0.00 4.18
4593 5404 3.581332 TCCCTCTGTTCCAAATTACTCGT 59.419 43.478 0.00 0.00 0.00 4.18
4594 5405 4.041198 TCCCTCTGTTCCAAATTACTCGTT 59.959 41.667 0.00 0.00 0.00 3.85
4595 5406 4.154195 CCCTCTGTTCCAAATTACTCGTTG 59.846 45.833 0.00 0.00 0.00 4.10
4596 5407 4.755123 CCTCTGTTCCAAATTACTCGTTGT 59.245 41.667 0.00 0.00 0.00 3.32
4597 5408 5.929992 CCTCTGTTCCAAATTACTCGTTGTA 59.070 40.000 0.00 0.00 0.00 2.41
4598 5409 6.090898 CCTCTGTTCCAAATTACTCGTTGTAG 59.909 42.308 0.00 0.00 32.08 2.74
4599 5410 6.751157 TCTGTTCCAAATTACTCGTTGTAGA 58.249 36.000 0.00 0.00 32.08 2.59
4600 5411 7.211573 TCTGTTCCAAATTACTCGTTGTAGAA 58.788 34.615 0.00 0.00 32.08 2.10
4601 5412 7.711772 TCTGTTCCAAATTACTCGTTGTAGAAA 59.288 33.333 0.00 0.00 32.08 2.52
4602 5413 8.385898 TGTTCCAAATTACTCGTTGTAGAAAT 57.614 30.769 0.00 0.00 32.08 2.17
4603 5414 8.286800 TGTTCCAAATTACTCGTTGTAGAAATG 58.713 33.333 0.00 0.00 32.08 2.32
4604 5415 7.972832 TCCAAATTACTCGTTGTAGAAATGT 57.027 32.000 0.00 0.00 32.08 2.71
4605 5416 9.491675 TTCCAAATTACTCGTTGTAGAAATGTA 57.508 29.630 0.00 0.00 32.08 2.29
4606 5417 9.661563 TCCAAATTACTCGTTGTAGAAATGTAT 57.338 29.630 0.00 0.00 32.08 2.29
4683 5494 9.645059 AATTACATCTAGATACATCCATTGTCG 57.355 33.333 4.54 0.00 39.87 4.35
4684 5495 5.473931 ACATCTAGATACATCCATTGTCGC 58.526 41.667 4.54 0.00 39.87 5.19
4685 5496 5.011023 ACATCTAGATACATCCATTGTCGCA 59.989 40.000 4.54 0.00 39.87 5.10
4686 5497 5.728637 TCTAGATACATCCATTGTCGCAT 57.271 39.130 0.00 0.00 39.87 4.73
4687 5498 6.834168 TCTAGATACATCCATTGTCGCATA 57.166 37.500 0.00 0.00 39.87 3.14
4688 5499 7.227049 TCTAGATACATCCATTGTCGCATAA 57.773 36.000 0.00 0.00 39.87 1.90
4689 5500 7.840931 TCTAGATACATCCATTGTCGCATAAT 58.159 34.615 0.00 0.00 39.87 1.28
4690 5501 8.314021 TCTAGATACATCCATTGTCGCATAATT 58.686 33.333 0.00 0.00 39.87 1.40
4691 5502 7.369803 AGATACATCCATTGTCGCATAATTC 57.630 36.000 0.00 0.00 39.87 2.17
4692 5503 6.936335 AGATACATCCATTGTCGCATAATTCA 59.064 34.615 0.00 0.00 39.87 2.57
4693 5504 5.428496 ACATCCATTGTCGCATAATTCAG 57.572 39.130 0.00 0.00 30.89 3.02
4694 5505 5.125356 ACATCCATTGTCGCATAATTCAGA 58.875 37.500 0.00 0.00 30.89 3.27
4695 5506 5.589855 ACATCCATTGTCGCATAATTCAGAA 59.410 36.000 0.00 0.00 30.89 3.02
4696 5507 5.484173 TCCATTGTCGCATAATTCAGAAC 57.516 39.130 0.00 0.00 0.00 3.01
4697 5508 4.033932 TCCATTGTCGCATAATTCAGAACG 59.966 41.667 0.00 0.00 0.00 3.95
4698 5509 4.274069 CATTGTCGCATAATTCAGAACGG 58.726 43.478 0.00 0.00 0.00 4.44
4699 5510 3.239587 TGTCGCATAATTCAGAACGGA 57.760 42.857 0.00 0.00 0.00 4.69
4700 5511 3.591023 TGTCGCATAATTCAGAACGGAA 58.409 40.909 0.00 0.00 0.00 4.30
4701 5512 3.616821 TGTCGCATAATTCAGAACGGAAG 59.383 43.478 0.00 0.00 0.00 3.46
4702 5513 3.001330 GTCGCATAATTCAGAACGGAAGG 59.999 47.826 0.00 0.00 0.00 3.46
4703 5514 3.118920 TCGCATAATTCAGAACGGAAGGA 60.119 43.478 0.00 0.00 0.00 3.36
4704 5515 3.246226 CGCATAATTCAGAACGGAAGGAG 59.754 47.826 0.00 0.00 0.00 3.69
4705 5516 4.192317 GCATAATTCAGAACGGAAGGAGT 58.808 43.478 0.00 0.00 0.00 3.85
4706 5517 5.357257 GCATAATTCAGAACGGAAGGAGTA 58.643 41.667 0.00 0.00 0.00 2.59
4707 5518 5.234543 GCATAATTCAGAACGGAAGGAGTAC 59.765 44.000 0.00 0.00 0.00 2.73
4708 5519 4.884668 AATTCAGAACGGAAGGAGTACA 57.115 40.909 0.00 0.00 0.00 2.90
4709 5520 4.884668 ATTCAGAACGGAAGGAGTACAA 57.115 40.909 0.00 0.00 0.00 2.41
4710 5521 4.675976 TTCAGAACGGAAGGAGTACAAA 57.324 40.909 0.00 0.00 0.00 2.83
4711 5522 3.986277 TCAGAACGGAAGGAGTACAAAC 58.014 45.455 0.00 0.00 0.00 2.93
4712 5523 3.385433 TCAGAACGGAAGGAGTACAAACA 59.615 43.478 0.00 0.00 0.00 2.83
4718 5529 3.743269 CGGAAGGAGTACAAACACACCTT 60.743 47.826 4.89 4.89 38.04 3.50
4721 5532 4.497291 AGGAGTACAAACACACCTTCAA 57.503 40.909 0.00 0.00 0.00 2.69
4737 5548 2.291209 TCAAGCCAATCCAAGCAGAA 57.709 45.000 0.00 0.00 0.00 3.02
4741 5552 3.881937 AGCCAATCCAAGCAGAAATTC 57.118 42.857 0.00 0.00 0.00 2.17
4744 5555 3.853475 CCAATCCAAGCAGAAATTCCAC 58.147 45.455 0.00 0.00 0.00 4.02
4745 5556 3.512724 CCAATCCAAGCAGAAATTCCACT 59.487 43.478 0.00 0.00 0.00 4.00
4746 5557 4.491676 CAATCCAAGCAGAAATTCCACTG 58.508 43.478 0.00 0.00 37.22 3.66
4752 5563 0.523072 CAGAAATTCCACTGCACGGG 59.477 55.000 0.00 0.00 0.00 5.28
4753 5564 1.212751 GAAATTCCACTGCACGGGC 59.787 57.895 0.34 0.34 41.68 6.13
4755 5566 3.842925 AATTCCACTGCACGGGCGT 62.843 57.895 4.58 2.64 45.35 5.68
4756 5567 2.457743 AATTCCACTGCACGGGCGTA 62.458 55.000 4.58 0.00 45.35 4.42
4757 5568 2.457743 ATTCCACTGCACGGGCGTAA 62.458 55.000 4.58 0.00 45.35 3.18
4758 5569 3.118454 CCACTGCACGGGCGTAAG 61.118 66.667 4.58 0.00 45.35 2.34
4759 5570 3.118454 CACTGCACGGGCGTAAGG 61.118 66.667 4.58 0.00 45.35 2.69
4760 5571 3.622826 ACTGCACGGGCGTAAGGT 61.623 61.111 4.58 0.00 45.35 3.50
4761 5572 2.813908 CTGCACGGGCGTAAGGTC 60.814 66.667 4.58 0.00 45.35 3.85
4762 5573 3.296709 CTGCACGGGCGTAAGGTCT 62.297 63.158 4.58 0.00 45.35 3.85
4763 5574 2.813908 GCACGGGCGTAAGGTCTG 60.814 66.667 0.00 0.00 38.28 3.51
4764 5575 2.967397 CACGGGCGTAAGGTCTGA 59.033 61.111 0.00 0.00 38.28 3.27
4765 5576 1.290955 CACGGGCGTAAGGTCTGAA 59.709 57.895 0.00 0.00 38.28 3.02
4766 5577 0.320073 CACGGGCGTAAGGTCTGAAA 60.320 55.000 0.00 0.00 38.28 2.69
4767 5578 0.393820 ACGGGCGTAAGGTCTGAAAA 59.606 50.000 0.00 0.00 38.28 2.29
4768 5579 1.202675 ACGGGCGTAAGGTCTGAAAAA 60.203 47.619 0.00 0.00 38.28 1.94
4769 5580 1.196127 CGGGCGTAAGGTCTGAAAAAC 59.804 52.381 0.00 0.00 38.28 2.43
4770 5581 2.501261 GGGCGTAAGGTCTGAAAAACT 58.499 47.619 0.00 0.00 38.28 2.66
4771 5582 3.667360 GGGCGTAAGGTCTGAAAAACTA 58.333 45.455 0.00 0.00 38.28 2.24
4772 5583 3.683340 GGGCGTAAGGTCTGAAAAACTAG 59.317 47.826 0.00 0.00 38.28 2.57
4773 5584 4.562143 GGGCGTAAGGTCTGAAAAACTAGA 60.562 45.833 0.00 0.00 38.28 2.43
4774 5585 4.992951 GGCGTAAGGTCTGAAAAACTAGAA 59.007 41.667 0.00 0.00 38.28 2.10
4775 5586 5.467735 GGCGTAAGGTCTGAAAAACTAGAAA 59.532 40.000 0.00 0.00 38.28 2.52
4776 5587 6.361114 GCGTAAGGTCTGAAAAACTAGAAAC 58.639 40.000 0.00 0.00 38.28 2.78
4777 5588 6.202379 GCGTAAGGTCTGAAAAACTAGAAACT 59.798 38.462 0.00 0.00 38.28 2.66
4778 5589 7.383300 GCGTAAGGTCTGAAAAACTAGAAACTA 59.617 37.037 0.00 0.00 38.28 2.24
4779 5590 8.697960 CGTAAGGTCTGAAAAACTAGAAACTAC 58.302 37.037 0.00 0.00 0.00 2.73
4780 5591 9.538508 GTAAGGTCTGAAAAACTAGAAACTACA 57.461 33.333 0.00 0.00 0.00 2.74
4782 5593 9.457436 AAGGTCTGAAAAACTAGAAACTACAAA 57.543 29.630 0.00 0.00 0.00 2.83
4783 5594 9.628500 AGGTCTGAAAAACTAGAAACTACAAAT 57.372 29.630 0.00 0.00 0.00 2.32
4809 5620 0.324943 ATACGCAGGAGCAACACCTT 59.675 50.000 0.00 0.00 42.27 3.50
4817 5628 3.084786 AGGAGCAACACCTTAGATTTGC 58.915 45.455 0.00 0.00 43.85 3.68
4818 5629 2.164422 GGAGCAACACCTTAGATTTGCC 59.836 50.000 1.67 0.00 44.46 4.52
4819 5630 2.164422 GAGCAACACCTTAGATTTGCCC 59.836 50.000 1.67 0.00 44.46 5.36
4843 5654 3.517296 TTTATCAAGGGCTCACACCAA 57.483 42.857 0.00 0.00 0.00 3.67
4855 5666 3.126514 GCTCACACCAAACATCAGATCTG 59.873 47.826 17.07 17.07 0.00 2.90
4856 5667 4.321718 CTCACACCAAACATCAGATCTGT 58.678 43.478 21.92 7.26 0.00 3.41
4857 5668 5.482006 CTCACACCAAACATCAGATCTGTA 58.518 41.667 21.92 9.67 0.00 2.74
4859 5670 6.475504 TCACACCAAACATCAGATCTGTAAT 58.524 36.000 21.92 6.85 0.00 1.89
4860 5671 7.619965 TCACACCAAACATCAGATCTGTAATA 58.380 34.615 21.92 3.34 0.00 0.98
4862 5673 8.177663 CACACCAAACATCAGATCTGTAATAAC 58.822 37.037 21.92 0.00 0.00 1.89
4863 5674 7.882791 ACACCAAACATCAGATCTGTAATAACA 59.117 33.333 21.92 1.39 0.00 2.41
4865 5676 9.466497 ACCAAACATCAGATCTGTAATAACATT 57.534 29.630 21.92 5.76 34.37 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.263940 TCTCGATTTTCCGATTTGATTAGTTT 57.736 30.769 0.00 0.00 37.96 2.66
11 12 7.843490 TCTCGATTTTCCGATTTGATTAGTT 57.157 32.000 0.00 0.00 37.96 2.24
13 14 8.551205 TCATTCTCGATTTTCCGATTTGATTAG 58.449 33.333 0.00 0.00 37.96 1.73
14 15 8.432110 TCATTCTCGATTTTCCGATTTGATTA 57.568 30.769 0.00 0.00 37.96 1.75
17 18 6.106003 TCTCATTCTCGATTTTCCGATTTGA 58.894 36.000 0.00 0.00 37.96 2.69
18 19 6.349973 TCTCATTCTCGATTTTCCGATTTG 57.650 37.500 0.00 0.00 37.96 2.32
21 22 4.054671 GCTCTCATTCTCGATTTTCCGAT 58.945 43.478 0.00 0.00 37.96 4.18
22 23 3.448686 GCTCTCATTCTCGATTTTCCGA 58.551 45.455 0.00 0.00 37.03 4.55
23 24 2.217393 CGCTCTCATTCTCGATTTTCCG 59.783 50.000 0.00 0.00 0.00 4.30
24 25 2.541762 CCGCTCTCATTCTCGATTTTCC 59.458 50.000 0.00 0.00 0.00 3.13
30 31 0.031314 GCATCCGCTCTCATTCTCGA 59.969 55.000 0.00 0.00 34.30 4.04
92 93 1.064166 ACTCCTACCGGCTACTTGCTA 60.064 52.381 0.00 0.00 42.39 3.49
97 98 0.549950 TGCTACTCCTACCGGCTACT 59.450 55.000 0.00 0.00 0.00 2.57
99 100 1.144298 TCATGCTACTCCTACCGGCTA 59.856 52.381 0.00 0.00 0.00 3.93
100 101 0.106167 TCATGCTACTCCTACCGGCT 60.106 55.000 0.00 0.00 0.00 5.52
101 102 0.969894 ATCATGCTACTCCTACCGGC 59.030 55.000 0.00 0.00 0.00 6.13
102 103 5.652891 ACTATTATCATGCTACTCCTACCGG 59.347 44.000 0.00 0.00 0.00 5.28
103 104 6.761099 ACTATTATCATGCTACTCCTACCG 57.239 41.667 0.00 0.00 0.00 4.02
106 107 7.339721 GGCACTACTATTATCATGCTACTCCTA 59.660 40.741 0.00 0.00 33.57 2.94
108 109 6.071334 TGGCACTACTATTATCATGCTACTCC 60.071 42.308 0.00 0.00 33.57 3.85
109 110 6.809196 GTGGCACTACTATTATCATGCTACTC 59.191 42.308 11.13 0.00 40.25 2.59
111 112 5.869888 GGTGGCACTACTATTATCATGCTAC 59.130 44.000 18.45 2.33 41.98 3.58
112 113 5.542251 TGGTGGCACTACTATTATCATGCTA 59.458 40.000 18.45 0.00 33.57 3.49
113 114 4.347876 TGGTGGCACTACTATTATCATGCT 59.652 41.667 18.45 0.00 33.57 3.79
114 115 4.641396 TGGTGGCACTACTATTATCATGC 58.359 43.478 18.45 0.00 0.00 4.06
115 116 4.692625 GCTGGTGGCACTACTATTATCATG 59.307 45.833 18.45 0.00 41.35 3.07
116 117 4.899502 GCTGGTGGCACTACTATTATCAT 58.100 43.478 18.45 0.00 41.35 2.45
117 118 4.336889 GCTGGTGGCACTACTATTATCA 57.663 45.455 18.45 2.43 41.35 2.15
130 131 1.312371 TTTAATCGCCTGCTGGTGGC 61.312 55.000 21.45 11.20 46.42 5.01
131 132 0.451783 GTTTAATCGCCTGCTGGTGG 59.548 55.000 21.45 9.52 43.72 4.61
132 133 1.453155 AGTTTAATCGCCTGCTGGTG 58.547 50.000 16.52 16.52 44.86 4.17
141 142 1.861971 CCCCCGACTAGTTTAATCGC 58.138 55.000 0.00 0.00 34.52 4.58
198 199 6.985645 GCCAATATGCCATTTTCTCACAATTA 59.014 34.615 0.00 0.00 0.00 1.40
201 202 4.222366 TGCCAATATGCCATTTTCTCACAA 59.778 37.500 0.00 0.00 0.00 3.33
202 203 3.768215 TGCCAATATGCCATTTTCTCACA 59.232 39.130 0.00 0.00 0.00 3.58
203 204 4.389890 TGCCAATATGCCATTTTCTCAC 57.610 40.909 0.00 0.00 0.00 3.51
204 205 4.202274 CCATGCCAATATGCCATTTTCTCA 60.202 41.667 0.00 0.00 0.00 3.27
205 206 4.039488 TCCATGCCAATATGCCATTTTCTC 59.961 41.667 0.00 0.00 0.00 2.87
229 238 1.589196 GCGATTCCTTCTCGTCCCG 60.589 63.158 0.00 0.00 38.37 5.14
234 243 1.299468 CCCGAGCGATTCCTTCTCG 60.299 63.158 4.13 4.13 46.44 4.04
269 278 4.084118 CCACTCTCGCTTCTTTCTTTCTTG 60.084 45.833 0.00 0.00 0.00 3.02
284 293 1.887320 CGTTTACGTACCCACTCTCG 58.113 55.000 0.00 0.00 34.11 4.04
296 305 3.782893 CCGCTTTCTCTACTACGTTTACG 59.217 47.826 0.00 0.00 46.33 3.18
297 306 4.101235 CCCGCTTTCTCTACTACGTTTAC 58.899 47.826 0.00 0.00 0.00 2.01
298 307 4.009675 TCCCGCTTTCTCTACTACGTTTA 58.990 43.478 0.00 0.00 0.00 2.01
299 308 2.821969 TCCCGCTTTCTCTACTACGTTT 59.178 45.455 0.00 0.00 0.00 3.60
300 309 2.163211 GTCCCGCTTTCTCTACTACGTT 59.837 50.000 0.00 0.00 0.00 3.99
301 310 1.742268 GTCCCGCTTTCTCTACTACGT 59.258 52.381 0.00 0.00 0.00 3.57
302 311 1.267932 CGTCCCGCTTTCTCTACTACG 60.268 57.143 0.00 0.00 0.00 3.51
306 315 0.100861 CTCCGTCCCGCTTTCTCTAC 59.899 60.000 0.00 0.00 0.00 2.59
383 401 3.330720 AAAGGTGAGAGGGGCGGG 61.331 66.667 0.00 0.00 0.00 6.13
384 402 1.842381 AAGAAAGGTGAGAGGGGCGG 61.842 60.000 0.00 0.00 0.00 6.13
385 403 0.036875 AAAGAAAGGTGAGAGGGGCG 59.963 55.000 0.00 0.00 0.00 6.13
386 404 2.163509 GAAAAGAAAGGTGAGAGGGGC 58.836 52.381 0.00 0.00 0.00 5.80
387 405 3.797559 AGAAAAGAAAGGTGAGAGGGG 57.202 47.619 0.00 0.00 0.00 4.79
388 406 5.830457 AGAAAAGAAAAGAAAGGTGAGAGGG 59.170 40.000 0.00 0.00 0.00 4.30
389 407 6.951062 AGAAAAGAAAAGAAAGGTGAGAGG 57.049 37.500 0.00 0.00 0.00 3.69
390 408 9.295214 GAAAAGAAAAGAAAAGAAAGGTGAGAG 57.705 33.333 0.00 0.00 0.00 3.20
396 414 5.234329 GGCGGAAAAGAAAAGAAAAGAAAGG 59.766 40.000 0.00 0.00 0.00 3.11
444 482 0.889306 CTAGTATGTAGAGGCCGGCC 59.111 60.000 39.29 39.29 0.00 6.13
445 483 1.540707 GTCTAGTATGTAGAGGCCGGC 59.459 57.143 21.18 21.18 0.00 6.13
446 484 2.161030 GGTCTAGTATGTAGAGGCCGG 58.839 57.143 0.00 0.00 0.00 6.13
447 485 2.161030 GGGTCTAGTATGTAGAGGCCG 58.839 57.143 0.00 0.00 35.71 6.13
448 486 3.074836 AGAGGGTCTAGTATGTAGAGGCC 59.925 52.174 0.00 0.00 34.00 5.19
449 487 4.042435 AGAGAGGGTCTAGTATGTAGAGGC 59.958 50.000 0.00 0.00 31.71 4.70
450 488 5.546499 AGAGAGAGGGTCTAGTATGTAGAGG 59.454 48.000 0.00 0.00 34.71 3.69
451 489 6.571731 CGAGAGAGAGGGTCTAGTATGTAGAG 60.572 50.000 0.00 0.00 34.71 2.43
452 490 5.244402 CGAGAGAGAGGGTCTAGTATGTAGA 59.756 48.000 0.00 0.00 34.71 2.59
454 492 4.262549 GCGAGAGAGAGGGTCTAGTATGTA 60.263 50.000 0.00 0.00 34.71 2.29
455 493 3.495453 GCGAGAGAGAGGGTCTAGTATGT 60.495 52.174 0.00 0.00 34.71 2.29
456 494 3.071479 GCGAGAGAGAGGGTCTAGTATG 58.929 54.545 0.00 0.00 34.71 2.39
457 495 2.706723 TGCGAGAGAGAGGGTCTAGTAT 59.293 50.000 0.00 0.00 34.71 2.12
458 496 2.103432 CTGCGAGAGAGAGGGTCTAGTA 59.897 54.545 0.00 0.00 34.71 1.82
459 497 0.913205 TGCGAGAGAGAGGGTCTAGT 59.087 55.000 0.00 0.00 34.71 2.57
460 498 1.134220 ACTGCGAGAGAGAGGGTCTAG 60.134 57.143 0.00 0.00 34.71 2.43
461 499 0.913205 ACTGCGAGAGAGAGGGTCTA 59.087 55.000 0.00 0.00 34.71 2.59
462 500 0.393808 GACTGCGAGAGAGAGGGTCT 60.394 60.000 0.00 0.00 38.71 3.85
463 501 1.381165 GGACTGCGAGAGAGAGGGTC 61.381 65.000 0.00 0.00 0.00 4.46
464 502 1.379309 GGACTGCGAGAGAGAGGGT 60.379 63.158 0.00 0.00 0.00 4.34
465 503 2.124693 GGGACTGCGAGAGAGAGGG 61.125 68.421 0.00 0.00 0.00 4.30
466 504 2.477176 CGGGACTGCGAGAGAGAGG 61.477 68.421 0.00 0.00 0.00 3.69
467 505 1.747367 ACGGGACTGCGAGAGAGAG 60.747 63.158 0.00 0.00 0.00 3.20
468 506 2.041115 CACGGGACTGCGAGAGAGA 61.041 63.158 0.00 0.00 0.00 3.10
469 507 2.487428 CACGGGACTGCGAGAGAG 59.513 66.667 0.00 0.00 0.00 3.20
470 508 3.749064 GCACGGGACTGCGAGAGA 61.749 66.667 0.00 0.00 0.00 3.10
477 515 3.349006 GCACACAGCACGGGACTG 61.349 66.667 7.44 7.44 44.79 3.51
513 551 3.762823 CGGAAAAGAGTGGGTAGTCTAGT 59.237 47.826 0.00 0.00 35.54 2.57
514 552 3.130693 CCGGAAAAGAGTGGGTAGTCTAG 59.869 52.174 0.00 0.00 35.54 2.43
515 553 3.094572 CCGGAAAAGAGTGGGTAGTCTA 58.905 50.000 0.00 0.00 35.54 2.59
516 554 1.900486 CCGGAAAAGAGTGGGTAGTCT 59.100 52.381 0.00 0.00 38.24 3.24
517 555 1.066358 CCCGGAAAAGAGTGGGTAGTC 60.066 57.143 0.73 0.00 36.86 2.59
518 556 0.981943 CCCGGAAAAGAGTGGGTAGT 59.018 55.000 0.73 0.00 36.86 2.73
519 557 0.252197 CCCCGGAAAAGAGTGGGTAG 59.748 60.000 0.73 0.00 40.20 3.18
520 558 1.844544 GCCCCGGAAAAGAGTGGGTA 61.845 60.000 0.73 0.00 40.20 3.69
521 559 3.167414 CCCCGGAAAAGAGTGGGT 58.833 61.111 0.73 0.00 40.20 4.51
522 560 2.361230 GCCCCGGAAAAGAGTGGG 60.361 66.667 0.73 0.00 41.56 4.61
523 561 2.746277 CGCCCCGGAAAAGAGTGG 60.746 66.667 0.73 0.00 0.00 4.00
545 583 1.300971 TACAACTCCTCCCGTCGTCG 61.301 60.000 0.00 0.00 0.00 5.12
546 584 1.101331 ATACAACTCCTCCCGTCGTC 58.899 55.000 0.00 0.00 0.00 4.20
547 585 2.425143 TATACAACTCCTCCCGTCGT 57.575 50.000 0.00 0.00 0.00 4.34
577 615 1.374758 GTCAAGGTGACGAGCCAGG 60.375 63.158 0.00 0.00 37.67 4.45
638 688 2.014068 GCGAGAAGACAAAGGGATGGG 61.014 57.143 0.00 0.00 0.00 4.00
657 707 2.658593 CGGGATGATGACGACGGC 60.659 66.667 0.00 0.00 0.00 5.68
732 782 0.037232 GTTGGACCGTCCCTCTCAAG 60.037 60.000 15.24 0.00 35.03 3.02
733 783 1.812686 CGTTGGACCGTCCCTCTCAA 61.813 60.000 15.24 0.00 35.03 3.02
748 798 3.716006 CCCTGTCAGCGTGCGTTG 61.716 66.667 2.07 2.07 0.00 4.10
758 808 2.283676 GTCTCCGGGTCCCTGTCA 60.284 66.667 6.29 0.00 0.00 3.58
764 814 2.829458 CTCCTCGTCTCCGGGTCC 60.829 72.222 0.00 0.00 30.56 4.46
800 850 4.641645 TTGCAGCCAGGTCGGTGG 62.642 66.667 0.00 0.00 41.01 4.61
808 858 2.201436 CTTGCTCAGCTTGCAGCCAG 62.201 60.000 10.52 4.05 43.77 4.85
882 961 4.742201 TGAAGACGGCCGCTGCTC 62.742 66.667 28.58 15.93 37.74 4.26
883 962 3.612247 AATGAAGACGGCCGCTGCT 62.612 57.895 28.58 17.88 37.74 4.24
886 965 2.509336 CGAATGAAGACGGCCGCT 60.509 61.111 28.58 20.80 0.00 5.52
898 977 3.853330 CAGTCACCGGCGCGAATG 61.853 66.667 12.10 5.95 0.00 2.67
918 997 0.037232 CGACCTCCCTTCTTGACCAC 60.037 60.000 0.00 0.00 0.00 4.16
919 998 0.178944 TCGACCTCCCTTCTTGACCA 60.179 55.000 0.00 0.00 0.00 4.02
995 1076 4.374584 TCCCCGCCCCCATTTGTG 62.375 66.667 0.00 0.00 0.00 3.33
1027 1109 4.598894 CAGAGCCGCCGCAGCTAT 62.599 66.667 0.00 0.00 41.75 2.97
1171 1253 1.106285 GGGATTTGGCTAAGGCACAG 58.894 55.000 0.00 0.00 37.98 3.66
1174 1256 1.309688 GGGGGATTTGGCTAAGGCA 59.690 57.895 0.00 0.00 40.87 4.75
1223 1305 2.438795 GCGGGGCCAATTTCGGTA 60.439 61.111 4.39 0.00 0.00 4.02
1316 1401 2.785477 GCTCAATTTTGATGCGGATTCG 59.215 45.455 0.00 0.00 36.46 3.34
1351 1436 2.593026 GAGGGACAGATGTAGCTAGCT 58.407 52.381 23.12 23.12 0.00 3.32
1359 1445 0.544357 TCGGTTGGAGGGACAGATGT 60.544 55.000 0.00 0.00 0.00 3.06
1370 1456 1.079405 GATGGAAGCGTCGGTTGGA 60.079 57.895 15.40 0.62 0.00 3.53
1373 1459 0.035439 ATTGGATGGAAGCGTCGGTT 60.035 50.000 9.85 9.85 0.00 4.44
1433 1519 0.999406 CGGGTGCGAATGACTAGTTG 59.001 55.000 0.00 0.00 0.00 3.16
1586 1680 3.187227 CAGTCCTTGATTACTGTGTGTGC 59.813 47.826 0.00 0.00 38.62 4.57
1657 1754 1.874129 ATTCACCTACCGACCATGGA 58.126 50.000 21.47 0.00 0.00 3.41
1660 1757 2.838202 ACTGAATTCACCTACCGACCAT 59.162 45.455 3.38 0.00 0.00 3.55
1694 1791 0.395311 TGTAGCGTCGGAGAGGGAAT 60.395 55.000 0.00 0.00 43.38 3.01
1695 1792 1.001764 TGTAGCGTCGGAGAGGGAA 60.002 57.895 0.00 0.00 43.38 3.97
1698 1795 1.136984 GTGTGTAGCGTCGGAGAGG 59.863 63.158 0.00 0.00 46.27 3.69
1701 1798 0.170339 TGATGTGTGTAGCGTCGGAG 59.830 55.000 0.00 0.00 0.00 4.63
1702 1799 0.170339 CTGATGTGTGTAGCGTCGGA 59.830 55.000 0.00 0.00 31.66 4.55
1703 1800 0.109272 ACTGATGTGTGTAGCGTCGG 60.109 55.000 0.00 0.00 35.11 4.79
1704 1801 2.174764 GTACTGATGTGTGTAGCGTCG 58.825 52.381 0.00 0.00 0.00 5.12
1705 1802 2.915463 GTGTACTGATGTGTGTAGCGTC 59.085 50.000 0.00 0.00 0.00 5.19
1706 1803 2.352421 GGTGTACTGATGTGTGTAGCGT 60.352 50.000 0.00 0.00 0.00 5.07
1707 1804 2.259618 GGTGTACTGATGTGTGTAGCG 58.740 52.381 0.00 0.00 0.00 4.26
1708 1805 2.259618 CGGTGTACTGATGTGTGTAGC 58.740 52.381 0.00 0.00 0.00 3.58
1714 1814 1.202065 GCAATGCGGTGTACTGATGTG 60.202 52.381 0.00 0.00 0.00 3.21
1727 1827 2.780014 GAGAACGATTTGATGCAATGCG 59.220 45.455 0.00 0.00 0.00 4.73
1762 1862 2.903855 GGATGAGGGCACGGCATG 60.904 66.667 1.95 0.00 0.00 4.06
1766 1866 3.716195 TGGTGGATGAGGGCACGG 61.716 66.667 0.00 0.00 0.00 4.94
1767 1867 2.436646 GTGGTGGATGAGGGCACG 60.437 66.667 0.00 0.00 0.00 5.34
1768 1868 2.436646 CGTGGTGGATGAGGGCAC 60.437 66.667 0.00 0.00 0.00 5.01
1769 1869 2.606213 TCGTGGTGGATGAGGGCA 60.606 61.111 0.00 0.00 0.00 5.36
1770 1870 2.187946 CTCGTGGTGGATGAGGGC 59.812 66.667 0.00 0.00 34.42 5.19
1771 1871 1.219124 CACTCGTGGTGGATGAGGG 59.781 63.158 0.00 0.00 41.51 4.30
1772 1872 4.919653 CACTCGTGGTGGATGAGG 57.080 61.111 0.00 0.00 41.51 3.86
1930 2366 1.449070 GTGCGGGTTAGGTACAGCC 60.449 63.158 0.00 0.00 32.93 4.85
1951 2387 4.147449 TGCGTCCGATGGAGCAGG 62.147 66.667 6.06 0.00 33.43 4.85
1996 2432 6.792250 CAGCCGCTACTTTTATAAAATCATCG 59.208 38.462 10.97 11.67 0.00 3.84
2005 2441 6.844696 CTGAATTCAGCCGCTACTTTTATA 57.155 37.500 21.96 0.00 37.15 0.98
2134 2571 4.272261 CCCATTTTTAATAACCAATGCGGC 59.728 41.667 0.00 0.00 39.03 6.53
2153 2590 6.394640 TGGTAACCTCCTAATTTTATCCCCAT 59.605 38.462 0.00 0.00 0.00 4.00
2167 2604 5.640147 TGATGAAAACAATGGTAACCTCCT 58.360 37.500 0.00 0.00 0.00 3.69
2169 2606 7.433680 ACTTTGATGAAAACAATGGTAACCTC 58.566 34.615 0.00 0.00 29.78 3.85
2243 2690 0.607217 TCAGCAGCTCACCAACCATG 60.607 55.000 0.00 0.00 0.00 3.66
2299 2749 5.523552 TCGCCACTTATGTTATGAACAGATG 59.476 40.000 0.00 0.00 45.95 2.90
2374 2824 4.561105 ACAGTTCGATTCTGAGGAGAAAC 58.439 43.478 19.99 0.00 41.64 2.78
2427 2893 4.218635 TGTGGAGTACAGAGATGACACTTC 59.781 45.833 0.00 0.00 33.42 3.01
2433 2899 6.211384 TCTCAAAATGTGGAGTACAGAGATGA 59.789 38.462 0.00 0.00 43.80 2.92
2446 2915 5.894807 ACTTCAAACTGTCTCAAAATGTGG 58.105 37.500 0.00 0.00 0.00 4.17
2468 2944 8.556194 TGTTTTGAGCATATATGATCGGTTTAC 58.444 33.333 22.37 16.09 45.61 2.01
2634 3110 2.028190 ATGAAGATCTCCGCCGCG 59.972 61.111 5.59 5.59 0.00 6.46
2799 3275 2.954020 ATGTCGCCGCGATGTACTGG 62.954 60.000 20.03 0.00 38.42 4.00
2823 3299 1.509923 CTCGGTCCGGTTCCAGTAC 59.490 63.158 12.29 0.00 0.00 2.73
2877 3353 3.385749 ATAGTGGAAGCACGCCCCG 62.386 63.158 0.00 0.00 0.00 5.73
2921 3411 1.278127 TGAAGCCCAGTAGTAAGTGGC 59.722 52.381 0.00 0.00 43.92 5.01
2923 3413 3.997021 CTGTTGAAGCCCAGTAGTAAGTG 59.003 47.826 0.00 0.00 0.00 3.16
2971 3654 9.037737 CAAATCATTTGTGTTTCATTCTTCAGT 57.962 29.630 1.53 0.00 35.94 3.41
3024 3728 0.251832 GCAGGATCCCCCTCTCGATA 60.252 60.000 8.55 0.00 45.60 2.92
3276 4025 3.185797 TCGTATGTCGATCTACATGTCCG 59.814 47.826 20.09 17.76 44.01 4.79
3289 4038 3.179048 TCTCAACTTGCATCGTATGTCG 58.821 45.455 0.00 0.00 41.41 4.35
3293 4042 3.801698 AGCATCTCAACTTGCATCGTAT 58.198 40.909 0.00 0.00 41.35 3.06
3895 4654 2.556534 AATGTACACGACGAGGCTAC 57.443 50.000 0.00 0.00 0.00 3.58
3899 4658 4.210537 AGAACAAAAATGTACACGACGAGG 59.789 41.667 0.00 0.00 0.00 4.63
3957 4716 1.276415 ACGAAACGAAACGAACGGAA 58.724 45.000 0.00 0.00 34.93 4.30
3959 4718 1.256117 AGAACGAAACGAAACGAACGG 59.744 47.619 0.00 0.00 34.93 4.44
3960 4719 2.616117 AGAACGAAACGAAACGAACG 57.384 45.000 0.00 0.00 0.00 3.95
3961 4720 4.571889 AGAAAGAACGAAACGAAACGAAC 58.428 39.130 0.00 0.00 0.00 3.95
3962 4721 4.845621 AGAAAGAACGAAACGAAACGAA 57.154 36.364 0.00 0.00 0.00 3.85
3963 4722 4.845621 AAGAAAGAACGAAACGAAACGA 57.154 36.364 0.00 0.00 0.00 3.85
3964 4723 5.253335 AGAAAGAAAGAACGAAACGAAACG 58.747 37.500 0.00 0.00 0.00 3.60
3965 4724 7.488537 AAAGAAAGAAAGAACGAAACGAAAC 57.511 32.000 0.00 0.00 0.00 2.78
3966 4725 8.510132 AAAAAGAAAGAAAGAACGAAACGAAA 57.490 26.923 0.00 0.00 0.00 3.46
4058 4822 0.028902 ACAAAGAAAGTTGACGCCGC 59.971 50.000 0.00 0.00 32.59 6.53
4059 4823 2.542595 ACTACAAAGAAAGTTGACGCCG 59.457 45.455 0.00 0.00 32.59 6.46
4060 4824 3.311596 ACACTACAAAGAAAGTTGACGCC 59.688 43.478 0.00 0.00 32.59 5.68
4061 4825 4.201783 ACACACTACAAAGAAAGTTGACGC 60.202 41.667 0.00 0.00 32.59 5.19
4062 4826 5.464965 ACACACTACAAAGAAAGTTGACG 57.535 39.130 0.00 0.00 32.59 4.35
4063 4827 7.535489 ACTACACACTACAAAGAAAGTTGAC 57.465 36.000 0.00 0.00 32.59 3.18
4065 4829 8.495949 CCATACTACACACTACAAAGAAAGTTG 58.504 37.037 0.00 0.00 34.52 3.16
4066 4830 8.208903 ACCATACTACACACTACAAAGAAAGTT 58.791 33.333 0.00 0.00 0.00 2.66
4067 4831 7.732996 ACCATACTACACACTACAAAGAAAGT 58.267 34.615 0.00 0.00 0.00 2.66
4068 4832 8.495949 CAACCATACTACACACTACAAAGAAAG 58.504 37.037 0.00 0.00 0.00 2.62
4072 4836 6.347402 GCACAACCATACTACACACTACAAAG 60.347 42.308 0.00 0.00 0.00 2.77
4073 4837 5.467399 GCACAACCATACTACACACTACAAA 59.533 40.000 0.00 0.00 0.00 2.83
4074 4838 4.992319 GCACAACCATACTACACACTACAA 59.008 41.667 0.00 0.00 0.00 2.41
4075 4839 4.039366 TGCACAACCATACTACACACTACA 59.961 41.667 0.00 0.00 0.00 2.74
4076 4840 4.562082 TGCACAACCATACTACACACTAC 58.438 43.478 0.00 0.00 0.00 2.73
4079 4843 4.533222 GTTTGCACAACCATACTACACAC 58.467 43.478 0.00 0.00 0.00 3.82
4080 4844 3.248841 CGTTTGCACAACCATACTACACA 59.751 43.478 0.00 0.00 0.00 3.72
4081 4845 3.495377 TCGTTTGCACAACCATACTACAC 59.505 43.478 0.00 0.00 0.00 2.90
4083 4847 4.735662 TTCGTTTGCACAACCATACTAC 57.264 40.909 0.00 0.00 0.00 2.73
4085 4849 4.320935 GGAATTCGTTTGCACAACCATACT 60.321 41.667 0.00 0.00 0.00 2.12
4086 4850 3.917985 GGAATTCGTTTGCACAACCATAC 59.082 43.478 0.00 0.00 0.00 2.39
4087 4851 3.057174 GGGAATTCGTTTGCACAACCATA 60.057 43.478 0.00 0.00 0.00 2.74
4089 4853 1.067821 GGGAATTCGTTTGCACAACCA 59.932 47.619 0.00 0.00 0.00 3.67
4091 4855 2.793278 AGGGAATTCGTTTGCACAAC 57.207 45.000 0.00 0.00 0.00 3.32
4092 4856 3.810310 AAAGGGAATTCGTTTGCACAA 57.190 38.095 0.00 0.00 32.87 3.33
4093 4857 3.810310 AAAAGGGAATTCGTTTGCACA 57.190 38.095 0.00 0.00 34.19 4.57
4096 4860 5.041287 GGCTATAAAAGGGAATTCGTTTGC 58.959 41.667 0.00 2.28 34.19 3.68
4099 4863 3.314357 GCGGCTATAAAAGGGAATTCGTT 59.686 43.478 0.00 0.00 0.00 3.85
4101 4865 2.225727 GGCGGCTATAAAAGGGAATTCG 59.774 50.000 0.00 0.00 0.00 3.34
4103 4867 2.227194 CGGCGGCTATAAAAGGGAATT 58.773 47.619 7.61 0.00 0.00 2.17
4105 4869 0.542805 ACGGCGGCTATAAAAGGGAA 59.457 50.000 13.24 0.00 0.00 3.97
4106 4870 0.105408 GACGGCGGCTATAAAAGGGA 59.895 55.000 13.24 0.00 0.00 4.20
4108 4872 1.217882 CAGACGGCGGCTATAAAAGG 58.782 55.000 18.31 0.00 0.00 3.11
4109 4873 0.582005 GCAGACGGCGGCTATAAAAG 59.418 55.000 18.31 2.14 32.15 2.27
4110 4874 2.685364 GCAGACGGCGGCTATAAAA 58.315 52.632 18.31 0.00 32.15 1.52
4113 4877 1.848932 CGTAGCAGACGGCGGCTATA 61.849 60.000 25.96 9.16 46.69 1.31
4131 4903 1.136611 GCACTGTCAAGTTCGTTAGCG 60.137 52.381 0.00 0.00 32.98 4.26
4132 4904 2.096713 CAGCACTGTCAAGTTCGTTAGC 60.097 50.000 0.00 0.00 32.98 3.09
4133 4905 3.182572 GTCAGCACTGTCAAGTTCGTTAG 59.817 47.826 0.00 0.00 32.98 2.34
4134 4906 3.120792 GTCAGCACTGTCAAGTTCGTTA 58.879 45.455 0.00 0.00 32.98 3.18
4135 4907 1.933853 GTCAGCACTGTCAAGTTCGTT 59.066 47.619 0.00 0.00 32.98 3.85
4136 4908 1.137086 AGTCAGCACTGTCAAGTTCGT 59.863 47.619 0.00 0.00 32.98 3.85
4137 4909 1.524355 CAGTCAGCACTGTCAAGTTCG 59.476 52.381 0.00 0.00 44.63 3.95
4164 4936 6.206438 GCCATCTCTCTTTCTTCTCTGTTTTT 59.794 38.462 0.00 0.00 0.00 1.94
4165 4937 5.704978 GCCATCTCTCTTTCTTCTCTGTTTT 59.295 40.000 0.00 0.00 0.00 2.43
4166 4938 5.221803 TGCCATCTCTCTTTCTTCTCTGTTT 60.222 40.000 0.00 0.00 0.00 2.83
4173 4945 4.394610 GGAAACTGCCATCTCTCTTTCTTC 59.605 45.833 0.00 0.00 0.00 2.87
4189 4961 3.185188 CGTCACAACTCAGATGGAAACTG 59.815 47.826 0.00 0.00 38.20 3.16
4199 4971 0.317854 TCGAGTGCGTCACAACTCAG 60.318 55.000 11.58 2.29 36.74 3.35
4206 4978 3.004734 GCTGCTTCGAGTGCGTCAC 62.005 63.158 7.74 2.28 38.98 3.67
4215 4987 1.929169 CTGATGAATTCGCTGCTTCGA 59.071 47.619 0.04 0.00 36.60 3.71
4221 4993 2.711711 CCCCCTGATGAATTCGCTG 58.288 57.895 0.04 0.04 0.00 5.18
4242 5015 1.076549 TGAAACCTGCATCACCCCC 59.923 57.895 0.00 0.00 0.00 5.40
4244 5017 0.598065 GTGTGAAACCTGCATCACCC 59.402 55.000 14.04 0.87 44.16 4.61
4255 5028 5.284079 AGAATGTGATGCTTTGTGTGAAAC 58.716 37.500 0.00 0.00 37.35 2.78
4256 5029 5.507817 GGAGAATGTGATGCTTTGTGTGAAA 60.508 40.000 0.00 0.00 0.00 2.69
4268 5041 4.941325 CAGTCTGTTGGAGAATGTGATG 57.059 45.455 0.00 0.00 41.10 3.07
4278 5051 5.758296 CAGCTTAAGTTAACAGTCTGTTGGA 59.242 40.000 25.41 12.77 41.30 3.53
4279 5052 5.527582 ACAGCTTAAGTTAACAGTCTGTTGG 59.472 40.000 25.41 9.43 41.30 3.77
4281 5054 7.985752 AGTAACAGCTTAAGTTAACAGTCTGTT 59.014 33.333 21.48 21.48 43.88 3.16
4314 5087 5.163468 CCCCGATATCTTGTATCAGGATCTG 60.163 48.000 0.34 0.00 32.55 2.90
4315 5088 4.959210 CCCCGATATCTTGTATCAGGATCT 59.041 45.833 0.34 0.00 32.55 2.75
4334 5107 4.530857 GCACCCGACATCTCCCCG 62.531 72.222 0.00 0.00 0.00 5.73
4335 5108 2.966732 TTGCACCCGACATCTCCCC 61.967 63.158 0.00 0.00 0.00 4.81
4337 5110 0.392998 ATGTTGCACCCGACATCTCC 60.393 55.000 0.00 0.00 41.25 3.71
4341 5114 0.250684 TCACATGTTGCACCCGACAT 60.251 50.000 0.00 0.00 45.01 3.06
4345 5118 2.562912 GCTCACATGTTGCACCCG 59.437 61.111 13.80 0.00 0.00 5.28
4346 5119 0.953471 TACGCTCACATGTTGCACCC 60.953 55.000 17.43 0.00 0.00 4.61
4361 5168 1.508632 TTGTCTCAGGCTTTGTACGC 58.491 50.000 0.00 0.00 0.00 4.42
4362 5169 2.869801 TGTTTGTCTCAGGCTTTGTACG 59.130 45.455 0.00 0.00 0.00 3.67
4370 5177 1.734465 CTCCGATTGTTTGTCTCAGGC 59.266 52.381 0.00 0.00 0.00 4.85
4379 5186 3.077359 CCTTTCAGCTCTCCGATTGTTT 58.923 45.455 0.00 0.00 0.00 2.83
4392 5199 4.158394 TGAATCTGGTTTATGCCTTTCAGC 59.842 41.667 0.00 0.00 0.00 4.26
4408 5215 9.778993 ATTCAAACAAAACGATATCTGAATCTG 57.221 29.630 0.34 0.00 28.64 2.90
4409 5216 9.778993 CATTCAAACAAAACGATATCTGAATCT 57.221 29.630 8.72 0.00 31.62 2.40
4417 5224 9.277565 CGAAGAATCATTCAAACAAAACGATAT 57.722 29.630 0.00 0.00 0.00 1.63
4420 5227 6.720343 TCGAAGAATCATTCAAACAAAACGA 58.280 32.000 0.00 0.00 0.00 3.85
4421 5228 6.968004 TCGAAGAATCATTCAAACAAAACG 57.032 33.333 0.00 0.00 0.00 3.60
4427 5234 9.825972 TCTTGTTTATCGAAGAATCATTCAAAC 57.174 29.630 0.00 1.45 43.58 2.93
4453 5260 4.629200 GTCGCTTCAGACTCAATTCAGATT 59.371 41.667 0.00 0.00 38.09 2.40
4462 5269 2.623416 TCTTCTTGTCGCTTCAGACTCA 59.377 45.455 0.00 0.00 41.47 3.41
4463 5270 3.290308 TCTTCTTGTCGCTTCAGACTC 57.710 47.619 0.00 0.00 41.47 3.36
4464 5271 3.951775 ATCTTCTTGTCGCTTCAGACT 57.048 42.857 0.00 0.00 41.47 3.24
4465 5272 4.560819 CAGTATCTTCTTGTCGCTTCAGAC 59.439 45.833 0.00 0.00 41.30 3.51
4467 5274 3.305629 GCAGTATCTTCTTGTCGCTTCAG 59.694 47.826 0.00 0.00 0.00 3.02
4468 5275 3.254060 GCAGTATCTTCTTGTCGCTTCA 58.746 45.455 0.00 0.00 0.00 3.02
4469 5276 3.254060 TGCAGTATCTTCTTGTCGCTTC 58.746 45.455 0.00 0.00 0.00 3.86
4471 5278 2.232452 ACTGCAGTATCTTCTTGTCGCT 59.768 45.455 20.16 0.00 0.00 4.93
4472 5279 2.346847 CACTGCAGTATCTTCTTGTCGC 59.653 50.000 21.20 0.00 0.00 5.19
4473 5280 3.838120 TCACTGCAGTATCTTCTTGTCG 58.162 45.455 21.20 2.28 0.00 4.35
4474 5281 5.119898 CACTTCACTGCAGTATCTTCTTGTC 59.880 44.000 21.20 0.00 0.00 3.18
4475 5282 4.993584 CACTTCACTGCAGTATCTTCTTGT 59.006 41.667 21.20 7.24 0.00 3.16
4476 5283 5.233225 TCACTTCACTGCAGTATCTTCTTG 58.767 41.667 21.20 10.38 0.00 3.02
4477 5284 5.474578 TCACTTCACTGCAGTATCTTCTT 57.525 39.130 21.20 0.00 0.00 2.52
4478 5285 5.474578 TTCACTTCACTGCAGTATCTTCT 57.525 39.130 21.20 0.00 0.00 2.85
4479 5286 5.121454 CCTTTCACTTCACTGCAGTATCTTC 59.879 44.000 21.20 0.00 0.00 2.87
4480 5287 4.999950 CCTTTCACTTCACTGCAGTATCTT 59.000 41.667 21.20 1.33 0.00 2.40
4482 5289 3.126000 GCCTTTCACTTCACTGCAGTATC 59.874 47.826 21.20 0.00 0.00 2.24
4483 5290 3.077359 GCCTTTCACTTCACTGCAGTAT 58.923 45.455 21.20 2.40 0.00 2.12
4484 5291 2.104792 AGCCTTTCACTTCACTGCAGTA 59.895 45.455 21.20 3.71 0.00 2.74
4486 5293 1.602311 AGCCTTTCACTTCACTGCAG 58.398 50.000 13.48 13.48 0.00 4.41
4487 5294 2.057137 AAGCCTTTCACTTCACTGCA 57.943 45.000 0.00 0.00 0.00 4.41
4488 5295 2.099756 ACAAAGCCTTTCACTTCACTGC 59.900 45.455 0.00 0.00 0.00 4.40
4492 5303 4.021544 ACAACAACAAAGCCTTTCACTTCA 60.022 37.500 0.00 0.00 0.00 3.02
4495 5306 4.438200 CGTACAACAACAAAGCCTTTCACT 60.438 41.667 0.00 0.00 0.00 3.41
4502 5313 1.026584 ACCCGTACAACAACAAAGCC 58.973 50.000 0.00 0.00 0.00 4.35
4505 5316 2.230508 TGCAAACCCGTACAACAACAAA 59.769 40.909 0.00 0.00 0.00 2.83
4511 5322 0.312416 TGCATGCAAACCCGTACAAC 59.688 50.000 20.30 0.00 0.00 3.32
4514 5325 1.064952 GGTATGCATGCAAACCCGTAC 59.935 52.381 26.68 19.92 0.00 3.67
4515 5326 1.065053 AGGTATGCATGCAAACCCGTA 60.065 47.619 26.68 8.52 32.10 4.02
4528 5339 3.008049 CCCCATAGTTCAGGTAGGTATGC 59.992 52.174 0.00 0.00 0.00 3.14
4529 5340 3.008049 GCCCCATAGTTCAGGTAGGTATG 59.992 52.174 0.00 0.00 0.00 2.39
4530 5341 3.248888 GCCCCATAGTTCAGGTAGGTAT 58.751 50.000 0.00 0.00 0.00 2.73
4531 5342 2.686119 GCCCCATAGTTCAGGTAGGTA 58.314 52.381 0.00 0.00 0.00 3.08
4532 5343 1.508256 GCCCCATAGTTCAGGTAGGT 58.492 55.000 0.00 0.00 0.00 3.08
4533 5344 0.765510 GGCCCCATAGTTCAGGTAGG 59.234 60.000 0.00 0.00 0.00 3.18
4534 5345 1.507140 TGGCCCCATAGTTCAGGTAG 58.493 55.000 0.00 0.00 0.00 3.18
4535 5346 1.974028 TTGGCCCCATAGTTCAGGTA 58.026 50.000 0.00 0.00 0.00 3.08
4543 5354 1.066215 GCAAAGGTTTTGGCCCCATAG 60.066 52.381 0.00 0.00 0.00 2.23
4544 5355 0.980423 GCAAAGGTTTTGGCCCCATA 59.020 50.000 0.00 0.00 0.00 2.74
4545 5356 1.059006 TGCAAAGGTTTTGGCCCCAT 61.059 50.000 0.00 0.00 31.84 4.00
4558 5369 3.744660 ACAGAGGGAGTAGTTTGCAAAG 58.255 45.455 13.26 0.00 0.00 2.77
4559 5370 3.857157 ACAGAGGGAGTAGTTTGCAAA 57.143 42.857 8.05 8.05 0.00 3.68
4561 5372 2.038557 GGAACAGAGGGAGTAGTTTGCA 59.961 50.000 0.00 0.00 0.00 4.08
4567 5378 6.301169 AGTAATTTGGAACAGAGGGAGTAG 57.699 41.667 0.00 0.00 42.39 2.57
4568 5379 5.105473 CGAGTAATTTGGAACAGAGGGAGTA 60.105 44.000 0.00 0.00 42.39 2.59
4569 5380 4.322801 CGAGTAATTTGGAACAGAGGGAGT 60.323 45.833 0.00 0.00 42.39 3.85
4570 5381 4.184629 CGAGTAATTTGGAACAGAGGGAG 58.815 47.826 0.00 0.00 42.39 4.30
4571 5382 3.581332 ACGAGTAATTTGGAACAGAGGGA 59.419 43.478 0.00 0.00 42.39 4.20
4572 5383 3.939066 ACGAGTAATTTGGAACAGAGGG 58.061 45.455 0.00 0.00 42.39 4.30
4573 5384 4.755123 ACAACGAGTAATTTGGAACAGAGG 59.245 41.667 0.00 0.00 42.39 3.69
4574 5385 5.924475 ACAACGAGTAATTTGGAACAGAG 57.076 39.130 0.00 0.00 42.39 3.35
4575 5386 6.751157 TCTACAACGAGTAATTTGGAACAGA 58.249 36.000 0.00 0.00 33.07 3.41
4576 5387 7.416154 TTCTACAACGAGTAATTTGGAACAG 57.584 36.000 0.00 0.00 33.07 3.16
4577 5388 7.789273 TTTCTACAACGAGTAATTTGGAACA 57.211 32.000 0.00 0.00 30.92 3.18
4578 5389 8.287503 ACATTTCTACAACGAGTAATTTGGAAC 58.712 33.333 0.00 0.00 30.92 3.62
4579 5390 8.385898 ACATTTCTACAACGAGTAATTTGGAA 57.614 30.769 0.00 0.00 30.92 3.53
4580 5391 7.972832 ACATTTCTACAACGAGTAATTTGGA 57.027 32.000 0.00 0.00 30.92 3.53
4657 5468 9.645059 CGACAATGGATGTATCTAGATGTAATT 57.355 33.333 15.79 4.27 44.12 1.40
4658 5469 7.761704 GCGACAATGGATGTATCTAGATGTAAT 59.238 37.037 15.79 5.97 44.12 1.89
4659 5470 7.090808 GCGACAATGGATGTATCTAGATGTAA 58.909 38.462 15.79 1.06 44.12 2.41
4660 5471 6.208599 TGCGACAATGGATGTATCTAGATGTA 59.791 38.462 15.79 4.44 44.12 2.29
4661 5472 5.011023 TGCGACAATGGATGTATCTAGATGT 59.989 40.000 15.79 2.44 44.12 3.06
4662 5473 5.473039 TGCGACAATGGATGTATCTAGATG 58.527 41.667 15.79 0.00 44.12 2.90
4663 5474 5.728637 TGCGACAATGGATGTATCTAGAT 57.271 39.130 10.73 10.73 44.12 1.98
4664 5475 5.728637 ATGCGACAATGGATGTATCTAGA 57.271 39.130 0.00 0.00 44.12 2.43
4665 5476 8.484641 AATTATGCGACAATGGATGTATCTAG 57.515 34.615 0.00 0.00 44.12 2.43
4666 5477 8.093927 TGAATTATGCGACAATGGATGTATCTA 58.906 33.333 0.00 0.00 44.12 1.98
4667 5478 6.936335 TGAATTATGCGACAATGGATGTATCT 59.064 34.615 0.00 0.00 44.12 1.98
4668 5479 7.118245 TCTGAATTATGCGACAATGGATGTATC 59.882 37.037 0.00 0.00 44.12 2.24
4669 5480 6.936335 TCTGAATTATGCGACAATGGATGTAT 59.064 34.615 0.00 0.00 44.12 2.29
4670 5481 6.287525 TCTGAATTATGCGACAATGGATGTA 58.712 36.000 0.00 0.00 44.12 2.29
4672 5483 5.678132 TCTGAATTATGCGACAATGGATG 57.322 39.130 0.00 0.00 0.00 3.51
4673 5484 5.277490 CGTTCTGAATTATGCGACAATGGAT 60.277 40.000 0.00 0.00 0.00 3.41
4674 5485 4.033932 CGTTCTGAATTATGCGACAATGGA 59.966 41.667 0.00 0.00 0.00 3.41
4675 5486 4.274069 CGTTCTGAATTATGCGACAATGG 58.726 43.478 0.00 0.00 0.00 3.16
4676 5487 4.033932 TCCGTTCTGAATTATGCGACAATG 59.966 41.667 0.00 0.00 0.00 2.82
4677 5488 4.188462 TCCGTTCTGAATTATGCGACAAT 58.812 39.130 0.00 0.00 0.00 2.71
4678 5489 3.591023 TCCGTTCTGAATTATGCGACAA 58.409 40.909 0.00 0.00 0.00 3.18
4679 5490 3.239587 TCCGTTCTGAATTATGCGACA 57.760 42.857 0.00 0.00 0.00 4.35
4680 5491 3.001330 CCTTCCGTTCTGAATTATGCGAC 59.999 47.826 0.00 0.00 0.00 5.19
4681 5492 3.118920 TCCTTCCGTTCTGAATTATGCGA 60.119 43.478 0.00 0.00 0.00 5.10
4682 5493 3.194861 TCCTTCCGTTCTGAATTATGCG 58.805 45.455 0.00 0.00 0.00 4.73
4683 5494 4.192317 ACTCCTTCCGTTCTGAATTATGC 58.808 43.478 0.00 0.00 0.00 3.14
4684 5495 6.338146 TGTACTCCTTCCGTTCTGAATTATG 58.662 40.000 0.00 0.00 0.00 1.90
4685 5496 6.540438 TGTACTCCTTCCGTTCTGAATTAT 57.460 37.500 0.00 0.00 0.00 1.28
4686 5497 5.988310 TGTACTCCTTCCGTTCTGAATTA 57.012 39.130 0.00 0.00 0.00 1.40
4687 5498 4.884668 TGTACTCCTTCCGTTCTGAATT 57.115 40.909 0.00 0.00 0.00 2.17
4688 5499 4.884668 TTGTACTCCTTCCGTTCTGAAT 57.115 40.909 0.00 0.00 0.00 2.57
4689 5500 4.141892 TGTTTGTACTCCTTCCGTTCTGAA 60.142 41.667 0.00 0.00 0.00 3.02
4690 5501 3.385433 TGTTTGTACTCCTTCCGTTCTGA 59.615 43.478 0.00 0.00 0.00 3.27
4691 5502 3.493503 GTGTTTGTACTCCTTCCGTTCTG 59.506 47.826 0.00 0.00 0.00 3.02
4692 5503 3.133362 TGTGTTTGTACTCCTTCCGTTCT 59.867 43.478 0.00 0.00 0.00 3.01
4693 5504 3.246936 GTGTGTTTGTACTCCTTCCGTTC 59.753 47.826 0.00 0.00 0.00 3.95
4694 5505 3.200483 GTGTGTTTGTACTCCTTCCGTT 58.800 45.455 0.00 0.00 0.00 4.44
4695 5506 2.484241 GGTGTGTTTGTACTCCTTCCGT 60.484 50.000 0.00 0.00 32.78 4.69
4696 5507 2.140717 GGTGTGTTTGTACTCCTTCCG 58.859 52.381 0.00 0.00 32.78 4.30
4697 5508 3.487120 AGGTGTGTTTGTACTCCTTCC 57.513 47.619 0.00 0.00 40.61 3.46
4700 5511 4.451900 CTTGAAGGTGTGTTTGTACTCCT 58.548 43.478 0.00 0.00 44.15 3.69
4701 5512 3.003378 GCTTGAAGGTGTGTTTGTACTCC 59.997 47.826 0.00 0.00 35.09 3.85
4702 5513 3.003378 GGCTTGAAGGTGTGTTTGTACTC 59.997 47.826 0.00 0.00 0.00 2.59
4703 5514 2.949644 GGCTTGAAGGTGTGTTTGTACT 59.050 45.455 0.00 0.00 0.00 2.73
4704 5515 2.685897 TGGCTTGAAGGTGTGTTTGTAC 59.314 45.455 0.00 0.00 0.00 2.90
4705 5516 3.006112 TGGCTTGAAGGTGTGTTTGTA 57.994 42.857 0.00 0.00 0.00 2.41
4706 5517 1.846007 TGGCTTGAAGGTGTGTTTGT 58.154 45.000 0.00 0.00 0.00 2.83
4707 5518 2.957491 TTGGCTTGAAGGTGTGTTTG 57.043 45.000 0.00 0.00 0.00 2.93
4708 5519 2.365293 GGATTGGCTTGAAGGTGTGTTT 59.635 45.455 0.00 0.00 0.00 2.83
4709 5520 1.963515 GGATTGGCTTGAAGGTGTGTT 59.036 47.619 0.00 0.00 0.00 3.32
4710 5521 1.133513 TGGATTGGCTTGAAGGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
4711 5522 1.619654 TGGATTGGCTTGAAGGTGTG 58.380 50.000 0.00 0.00 0.00 3.82
4712 5523 2.242043 CTTGGATTGGCTTGAAGGTGT 58.758 47.619 0.00 0.00 0.00 4.16
4718 5529 2.291209 TTCTGCTTGGATTGGCTTGA 57.709 45.000 0.00 0.00 0.00 3.02
4721 5532 2.498885 GGAATTTCTGCTTGGATTGGCT 59.501 45.455 0.00 0.00 0.00 4.75
4737 5548 2.457743 TACGCCCGTGCAGTGGAATT 62.458 55.000 6.49 0.00 37.32 2.17
4741 5552 3.118454 CTTACGCCCGTGCAGTGG 61.118 66.667 3.22 0.00 37.32 4.00
4744 5555 2.813908 GACCTTACGCCCGTGCAG 60.814 66.667 3.22 0.00 37.32 4.41
4745 5556 3.307906 AGACCTTACGCCCGTGCA 61.308 61.111 3.22 0.00 37.32 4.57
4746 5557 2.775032 TTCAGACCTTACGCCCGTGC 62.775 60.000 3.22 0.00 0.00 5.34
4750 5561 2.501261 AGTTTTTCAGACCTTACGCCC 58.499 47.619 0.00 0.00 0.00 6.13
4751 5562 4.563061 TCTAGTTTTTCAGACCTTACGCC 58.437 43.478 0.00 0.00 0.00 5.68
4752 5563 6.202379 AGTTTCTAGTTTTTCAGACCTTACGC 59.798 38.462 0.00 0.00 0.00 4.42
4753 5564 7.710766 AGTTTCTAGTTTTTCAGACCTTACG 57.289 36.000 0.00 0.00 0.00 3.18
4756 5567 9.457436 TTTGTAGTTTCTAGTTTTTCAGACCTT 57.543 29.630 0.00 0.00 0.00 3.50
4757 5568 9.628500 ATTTGTAGTTTCTAGTTTTTCAGACCT 57.372 29.630 0.00 0.00 0.00 3.85
4770 5581 9.602568 TGCGTATGGAATTATTTGTAGTTTCTA 57.397 29.630 0.00 0.00 0.00 2.10
4771 5582 8.500753 TGCGTATGGAATTATTTGTAGTTTCT 57.499 30.769 0.00 0.00 0.00 2.52
4772 5583 7.855904 CCTGCGTATGGAATTATTTGTAGTTTC 59.144 37.037 0.00 0.00 0.00 2.78
4773 5584 7.554835 TCCTGCGTATGGAATTATTTGTAGTTT 59.445 33.333 0.00 0.00 0.00 2.66
4774 5585 7.051623 TCCTGCGTATGGAATTATTTGTAGTT 58.948 34.615 0.00 0.00 0.00 2.24
4775 5586 6.588204 TCCTGCGTATGGAATTATTTGTAGT 58.412 36.000 0.00 0.00 0.00 2.73
4776 5587 6.347725 GCTCCTGCGTATGGAATTATTTGTAG 60.348 42.308 0.00 0.00 32.61 2.74
4777 5588 5.468746 GCTCCTGCGTATGGAATTATTTGTA 59.531 40.000 0.00 0.00 32.61 2.41
4778 5589 4.275936 GCTCCTGCGTATGGAATTATTTGT 59.724 41.667 0.00 0.00 32.61 2.83
4779 5590 4.275689 TGCTCCTGCGTATGGAATTATTTG 59.724 41.667 0.00 0.00 43.34 2.32
4780 5591 4.460263 TGCTCCTGCGTATGGAATTATTT 58.540 39.130 0.00 0.00 43.34 1.40
4781 5592 4.085357 TGCTCCTGCGTATGGAATTATT 57.915 40.909 0.00 0.00 43.34 1.40
4782 5593 3.769739 TGCTCCTGCGTATGGAATTAT 57.230 42.857 0.00 0.00 43.34 1.28
4783 5594 3.202906 GTTGCTCCTGCGTATGGAATTA 58.797 45.455 0.00 0.00 43.34 1.40
4784 5595 2.017049 GTTGCTCCTGCGTATGGAATT 58.983 47.619 0.00 0.00 43.34 2.17
4785 5596 1.065491 TGTTGCTCCTGCGTATGGAAT 60.065 47.619 0.00 0.00 43.34 3.01
4786 5597 0.323302 TGTTGCTCCTGCGTATGGAA 59.677 50.000 0.00 0.00 43.34 3.53
4787 5598 0.391130 GTGTTGCTCCTGCGTATGGA 60.391 55.000 0.00 0.00 43.34 3.41
4788 5599 1.369091 GGTGTTGCTCCTGCGTATGG 61.369 60.000 0.00 0.00 43.34 2.74
4789 5600 0.391661 AGGTGTTGCTCCTGCGTATG 60.392 55.000 0.00 0.00 43.34 2.39
4790 5601 0.324943 AAGGTGTTGCTCCTGCGTAT 59.675 50.000 0.00 0.00 43.34 3.06
4791 5602 0.970640 TAAGGTGTTGCTCCTGCGTA 59.029 50.000 0.00 0.00 43.34 4.42
4792 5603 0.320771 CTAAGGTGTTGCTCCTGCGT 60.321 55.000 0.00 0.00 43.34 5.24
4793 5604 0.037326 TCTAAGGTGTTGCTCCTGCG 60.037 55.000 0.00 0.00 43.34 5.18
4794 5605 2.409948 ATCTAAGGTGTTGCTCCTGC 57.590 50.000 0.00 0.00 35.27 4.85
4795 5606 3.119708 GCAAATCTAAGGTGTTGCTCCTG 60.120 47.826 0.00 0.00 42.41 3.86
4818 5629 4.580580 GGTGTGAGCCCTTGATAAATTAGG 59.419 45.833 0.00 0.00 0.00 2.69
4819 5630 5.192927 TGGTGTGAGCCCTTGATAAATTAG 58.807 41.667 0.00 0.00 0.00 1.73
4833 5644 3.126514 CAGATCTGATGTTTGGTGTGAGC 59.873 47.826 18.34 0.00 0.00 4.26
4837 5648 7.882791 TGTTATTACAGATCTGATGTTTGGTGT 59.117 33.333 29.27 5.95 32.02 4.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.