Multiple sequence alignment - TraesCS3A01G439500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G439500 | chr3A | 100.000 | 2207 | 0 | 0 | 1 | 2207 | 682480641 | 682478435 | 0.000000e+00 | 4076.0 |
1 | TraesCS3A01G439500 | chr3A | 100.000 | 2105 | 0 | 0 | 3188 | 5292 | 682477454 | 682475350 | 0.000000e+00 | 3888.0 |
2 | TraesCS3A01G439500 | chr3A | 100.000 | 635 | 0 | 0 | 2338 | 2972 | 682478304 | 682477670 | 0.000000e+00 | 1173.0 |
3 | TraesCS3A01G439500 | chr3A | 80.155 | 388 | 62 | 8 | 1 | 376 | 654077431 | 654077815 | 5.220000e-70 | 276.0 |
4 | TraesCS3A01G439500 | chr3A | 85.043 | 234 | 35 | 0 | 1400 | 1633 | 225894569 | 225894336 | 6.850000e-59 | 239.0 |
5 | TraesCS3A01G439500 | chr3A | 90.278 | 72 | 5 | 2 | 1256 | 1326 | 225894945 | 225894875 | 5.640000e-15 | 93.5 |
6 | TraesCS3A01G439500 | chr3D | 94.143 | 1605 | 66 | 10 | 499 | 2095 | 546199820 | 546198236 | 0.000000e+00 | 2418.0 |
7 | TraesCS3A01G439500 | chr3D | 93.299 | 582 | 21 | 10 | 3379 | 3955 | 546197298 | 546196730 | 0.000000e+00 | 843.0 |
8 | TraesCS3A01G439500 | chr3D | 93.346 | 526 | 28 | 3 | 3968 | 4488 | 546196551 | 546196028 | 0.000000e+00 | 771.0 |
9 | TraesCS3A01G439500 | chr3D | 89.237 | 511 | 34 | 4 | 1 | 506 | 546203779 | 546203285 | 2.090000e-173 | 619.0 |
10 | TraesCS3A01G439500 | chr3D | 76.860 | 726 | 137 | 20 | 4575 | 5292 | 465037299 | 465036597 | 1.080000e-101 | 381.0 |
11 | TraesCS3A01G439500 | chr3D | 76.029 | 680 | 116 | 33 | 4618 | 5286 | 554717757 | 554718400 | 5.150000e-80 | 309.0 |
12 | TraesCS3A01G439500 | chr3D | 80.256 | 390 | 62 | 9 | 1 | 378 | 125294969 | 125294583 | 4.040000e-71 | 279.0 |
13 | TraesCS3A01G439500 | chr3D | 85.470 | 234 | 34 | 0 | 1400 | 1633 | 180470744 | 180470511 | 1.470000e-60 | 244.0 |
14 | TraesCS3A01G439500 | chr3D | 87.805 | 123 | 5 | 3 | 2080 | 2202 | 546198224 | 546198112 | 9.240000e-28 | 135.0 |
15 | TraesCS3A01G439500 | chr3D | 85.185 | 108 | 12 | 4 | 1220 | 1325 | 180471139 | 180471034 | 2.020000e-19 | 108.0 |
16 | TraesCS3A01G439500 | chr3B | 92.487 | 1677 | 71 | 30 | 542 | 2202 | 722591765 | 722590128 | 0.000000e+00 | 2348.0 |
17 | TraesCS3A01G439500 | chr3B | 91.275 | 1169 | 51 | 21 | 3354 | 4488 | 722588770 | 722587619 | 0.000000e+00 | 1546.0 |
18 | TraesCS3A01G439500 | chr3B | 91.882 | 542 | 38 | 3 | 1 | 537 | 722592859 | 722592319 | 0.000000e+00 | 752.0 |
19 | TraesCS3A01G439500 | chr3B | 79.845 | 387 | 65 | 10 | 1 | 376 | 731559361 | 731558977 | 2.430000e-68 | 270.0 |
20 | TraesCS3A01G439500 | chr3B | 84.188 | 234 | 37 | 0 | 1400 | 1633 | 258721284 | 258721051 | 1.480000e-55 | 228.0 |
21 | TraesCS3A01G439500 | chr3B | 84.259 | 108 | 13 | 4 | 1220 | 1325 | 258721665 | 258721560 | 9.380000e-18 | 102.0 |
22 | TraesCS3A01G439500 | chr3B | 100.000 | 28 | 0 | 0 | 4491 | 4518 | 24698716 | 24698743 | 1.000000e-02 | 52.8 |
23 | TraesCS3A01G439500 | chr7A | 83.914 | 746 | 88 | 11 | 4561 | 5289 | 101465697 | 101464967 | 0.000000e+00 | 684.0 |
24 | TraesCS3A01G439500 | chr7A | 80.990 | 384 | 61 | 9 | 1 | 378 | 420662777 | 420662400 | 1.440000e-75 | 294.0 |
25 | TraesCS3A01G439500 | chr5A | 77.688 | 744 | 119 | 27 | 4570 | 5289 | 706652345 | 706651625 | 1.370000e-110 | 411.0 |
26 | TraesCS3A01G439500 | chr5A | 75.034 | 737 | 146 | 20 | 4570 | 5286 | 531524279 | 531523561 | 1.850000e-79 | 307.0 |
27 | TraesCS3A01G439500 | chr5D | 76.757 | 740 | 134 | 28 | 4567 | 5289 | 394143555 | 394142837 | 3.870000e-101 | 379.0 |
28 | TraesCS3A01G439500 | chr5D | 76.178 | 743 | 130 | 29 | 4567 | 5286 | 197427046 | 197427764 | 1.090000e-91 | 348.0 |
29 | TraesCS3A01G439500 | chr1A | 76.455 | 739 | 138 | 19 | 4567 | 5286 | 500849359 | 500850080 | 8.370000e-98 | 368.0 |
30 | TraesCS3A01G439500 | chr7D | 75.908 | 743 | 135 | 29 | 4567 | 5286 | 461209283 | 461210004 | 1.830000e-89 | 340.0 |
31 | TraesCS3A01G439500 | chr4B | 82.768 | 383 | 48 | 13 | 1 | 376 | 610568344 | 610567973 | 5.110000e-85 | 326.0 |
32 | TraesCS3A01G439500 | chr4D | 82.292 | 384 | 56 | 10 | 1 | 378 | 392542762 | 392542385 | 6.610000e-84 | 322.0 |
33 | TraesCS3A01G439500 | chr7B | 83.191 | 351 | 47 | 5 | 1 | 340 | 646991131 | 646991480 | 1.430000e-80 | 311.0 |
34 | TraesCS3A01G439500 | chrUn | 75.034 | 737 | 143 | 27 | 4568 | 5284 | 51015125 | 51014410 | 2.390000e-78 | 303.0 |
35 | TraesCS3A01G439500 | chr4A | 75.034 | 737 | 143 | 27 | 4568 | 5284 | 720181113 | 720180398 | 2.390000e-78 | 303.0 |
36 | TraesCS3A01G439500 | chr4A | 74.627 | 737 | 143 | 29 | 4569 | 5283 | 720108544 | 720107830 | 8.670000e-73 | 285.0 |
37 | TraesCS3A01G439500 | chr2D | 75.868 | 634 | 123 | 19 | 4667 | 5289 | 534746870 | 534746256 | 4.010000e-76 | 296.0 |
38 | TraesCS3A01G439500 | chr6A | 75.901 | 527 | 92 | 25 | 4778 | 5289 | 52378856 | 52378350 | 2.460000e-58 | 237.0 |
39 | TraesCS3A01G439500 | chr2B | 74.454 | 595 | 118 | 28 | 4700 | 5278 | 612862823 | 612863399 | 5.330000e-55 | 226.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G439500 | chr3A | 682475350 | 682480641 | 5291 | True | 3045.666667 | 4076 | 100.000000 | 1 | 5292 | 3 | chr3A.!!$R2 | 5291 |
1 | TraesCS3A01G439500 | chr3D | 546196028 | 546203779 | 7751 | True | 957.200000 | 2418 | 91.566000 | 1 | 4488 | 5 | chr3D.!!$R4 | 4487 |
2 | TraesCS3A01G439500 | chr3D | 465036597 | 465037299 | 702 | True | 381.000000 | 381 | 76.860000 | 4575 | 5292 | 1 | chr3D.!!$R2 | 717 |
3 | TraesCS3A01G439500 | chr3D | 554717757 | 554718400 | 643 | False | 309.000000 | 309 | 76.029000 | 4618 | 5286 | 1 | chr3D.!!$F1 | 668 |
4 | TraesCS3A01G439500 | chr3B | 722587619 | 722592859 | 5240 | True | 1548.666667 | 2348 | 91.881333 | 1 | 4488 | 3 | chr3B.!!$R3 | 4487 |
5 | TraesCS3A01G439500 | chr7A | 101464967 | 101465697 | 730 | True | 684.000000 | 684 | 83.914000 | 4561 | 5289 | 1 | chr7A.!!$R1 | 728 |
6 | TraesCS3A01G439500 | chr5A | 706651625 | 706652345 | 720 | True | 411.000000 | 411 | 77.688000 | 4570 | 5289 | 1 | chr5A.!!$R2 | 719 |
7 | TraesCS3A01G439500 | chr5A | 531523561 | 531524279 | 718 | True | 307.000000 | 307 | 75.034000 | 4570 | 5286 | 1 | chr5A.!!$R1 | 716 |
8 | TraesCS3A01G439500 | chr5D | 394142837 | 394143555 | 718 | True | 379.000000 | 379 | 76.757000 | 4567 | 5289 | 1 | chr5D.!!$R1 | 722 |
9 | TraesCS3A01G439500 | chr5D | 197427046 | 197427764 | 718 | False | 348.000000 | 348 | 76.178000 | 4567 | 5286 | 1 | chr5D.!!$F1 | 719 |
10 | TraesCS3A01G439500 | chr1A | 500849359 | 500850080 | 721 | False | 368.000000 | 368 | 76.455000 | 4567 | 5286 | 1 | chr1A.!!$F1 | 719 |
11 | TraesCS3A01G439500 | chr7D | 461209283 | 461210004 | 721 | False | 340.000000 | 340 | 75.908000 | 4567 | 5286 | 1 | chr7D.!!$F1 | 719 |
12 | TraesCS3A01G439500 | chrUn | 51014410 | 51015125 | 715 | True | 303.000000 | 303 | 75.034000 | 4568 | 5284 | 1 | chrUn.!!$R1 | 716 |
13 | TraesCS3A01G439500 | chr4A | 720180398 | 720181113 | 715 | True | 303.000000 | 303 | 75.034000 | 4568 | 5284 | 1 | chr4A.!!$R2 | 716 |
14 | TraesCS3A01G439500 | chr4A | 720107830 | 720108544 | 714 | True | 285.000000 | 285 | 74.627000 | 4569 | 5283 | 1 | chr4A.!!$R1 | 714 |
15 | TraesCS3A01G439500 | chr2D | 534746256 | 534746870 | 614 | True | 296.000000 | 296 | 75.868000 | 4667 | 5289 | 1 | chr2D.!!$R1 | 622 |
16 | TraesCS3A01G439500 | chr6A | 52378350 | 52378856 | 506 | True | 237.000000 | 237 | 75.901000 | 4778 | 5289 | 1 | chr6A.!!$R1 | 511 |
17 | TraesCS3A01G439500 | chr2B | 612862823 | 612863399 | 576 | False | 226.000000 | 226 | 74.454000 | 4700 | 5278 | 1 | chr2B.!!$F1 | 578 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
446 | 452 | 0.036164 | TAGCATCACCACTTGCCGTT | 59.964 | 50.0 | 0.00 | 0.00 | 39.72 | 4.44 | F |
921 | 4954 | 0.811616 | CAACCGCCTAGGCACTGATC | 60.812 | 60.0 | 32.47 | 2.22 | 46.52 | 2.92 | F |
2607 | 6694 | 0.244450 | AATTGCCATGTCGCCAACTG | 59.756 | 50.0 | 0.00 | 0.00 | 0.00 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1883 | 5922 | 0.250124 | TGGTGGTGACGGTGATGAAC | 60.250 | 55.0 | 0.00 | 0.0 | 0.00 | 3.18 | R |
2666 | 6760 | 0.245266 | TCATAACTGGCGAGCGTTCA | 59.755 | 50.0 | 0.00 | 0.0 | 0.00 | 3.18 | R |
4529 | 9517 | 0.036010 | ATCCGTGCTGGGAACTTCAG | 60.036 | 55.0 | 0.37 | 0.0 | 40.09 | 3.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 7.148540 | GCAAATCAGCTTATGAAATTTCTGCAA | 60.149 | 33.333 | 18.64 | 9.02 | 42.53 | 4.08 |
38 | 39 | 7.604549 | TCAGCTTATGAAATTTCTGCAAATGA | 58.395 | 30.769 | 18.64 | 12.77 | 34.02 | 2.57 |
68 | 69 | 1.185315 | TCGAGATCATCAGGTGCACA | 58.815 | 50.000 | 20.43 | 0.00 | 0.00 | 4.57 |
71 | 72 | 0.610174 | AGATCATCAGGTGCACACGT | 59.390 | 50.000 | 20.43 | 0.00 | 0.00 | 4.49 |
73 | 74 | 2.159184 | AGATCATCAGGTGCACACGTAG | 60.159 | 50.000 | 20.43 | 5.33 | 0.00 | 3.51 |
89 | 90 | 6.495706 | CACACGTAGCTACTCATTGATCTTA | 58.504 | 40.000 | 21.20 | 0.00 | 0.00 | 2.10 |
201 | 202 | 7.958567 | CGGTATCAACATTTGTTATTTACGTGT | 59.041 | 33.333 | 0.00 | 0.00 | 36.32 | 4.49 |
216 | 217 | 2.811855 | ACGTGTGACATTGACGTGTAA | 58.188 | 42.857 | 0.00 | 0.00 | 44.27 | 2.41 |
246 | 252 | 2.470821 | GCATGGATTTGCATGAAGAGC | 58.529 | 47.619 | 15.21 | 0.00 | 42.31 | 4.09 |
247 | 253 | 2.100916 | GCATGGATTTGCATGAAGAGCT | 59.899 | 45.455 | 15.21 | 0.00 | 42.31 | 4.09 |
271 | 277 | 0.403655 | TTTGAGGTATGTGGCTGCCA | 59.596 | 50.000 | 19.30 | 19.30 | 0.00 | 4.92 |
272 | 278 | 0.403655 | TTGAGGTATGTGGCTGCCAA | 59.596 | 50.000 | 25.23 | 14.16 | 34.18 | 4.52 |
360 | 366 | 0.608035 | TGACCGGATTTGCCAAGTCC | 60.608 | 55.000 | 9.46 | 8.84 | 38.31 | 3.85 |
361 | 367 | 0.608035 | GACCGGATTTGCCAAGTCCA | 60.608 | 55.000 | 17.84 | 0.00 | 34.85 | 4.02 |
365 | 371 | 2.421388 | CCGGATTTGCCAAGTCCAGATA | 60.421 | 50.000 | 17.84 | 0.00 | 35.94 | 1.98 |
404 | 410 | 6.896883 | AGGTAAAACACTTTCTCCACTAACT | 58.103 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
444 | 450 | 1.131126 | CTTTAGCATCACCACTTGCCG | 59.869 | 52.381 | 0.00 | 0.00 | 39.72 | 5.69 |
446 | 452 | 0.036164 | TAGCATCACCACTTGCCGTT | 59.964 | 50.000 | 0.00 | 0.00 | 39.72 | 4.44 |
457 | 463 | 3.013921 | CACTTGCCGTTTATACATGGGT | 58.986 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
476 | 482 | 7.609532 | ACATGGGTCTCTTTGAGATTTTAGAAG | 59.390 | 37.037 | 0.00 | 0.00 | 40.98 | 2.85 |
519 | 3997 | 9.357652 | CCCATTATGTTTAACATTTCAGTCAAG | 57.642 | 33.333 | 16.08 | 0.00 | 39.88 | 3.02 |
708 | 4735 | 0.825425 | TCTAGGAGCTCCGCATCCAG | 60.825 | 60.000 | 26.95 | 16.76 | 42.08 | 3.86 |
788 | 4815 | 1.818060 | CACTGTGAGAGCTCTAGCACT | 59.182 | 52.381 | 26.84 | 12.23 | 44.44 | 4.40 |
920 | 4953 | 1.221840 | CAACCGCCTAGGCACTGAT | 59.778 | 57.895 | 32.47 | 12.69 | 46.52 | 2.90 |
921 | 4954 | 0.811616 | CAACCGCCTAGGCACTGATC | 60.812 | 60.000 | 32.47 | 2.22 | 46.52 | 2.92 |
922 | 4955 | 1.264749 | AACCGCCTAGGCACTGATCA | 61.265 | 55.000 | 32.47 | 0.00 | 46.52 | 2.92 |
993 | 5026 | 1.605058 | ATTAGGTCGACGCTGGCTGT | 61.605 | 55.000 | 9.92 | 0.00 | 0.00 | 4.40 |
994 | 5027 | 2.209064 | TTAGGTCGACGCTGGCTGTC | 62.209 | 60.000 | 9.92 | 7.22 | 0.00 | 3.51 |
1009 | 5042 | 1.306911 | TGTCCTGGGATGCCTAGCA | 60.307 | 57.895 | 4.35 | 0.00 | 44.86 | 3.49 |
1130 | 5163 | 3.752796 | GCACGGCCACTATAGACAA | 57.247 | 52.632 | 6.78 | 0.00 | 0.00 | 3.18 |
1208 | 5241 | 2.283604 | TAGCGGACAGTCCAGGCA | 60.284 | 61.111 | 20.13 | 4.35 | 35.91 | 4.75 |
1209 | 5242 | 1.685765 | TAGCGGACAGTCCAGGCAT | 60.686 | 57.895 | 20.13 | 8.15 | 35.91 | 4.40 |
1272 | 5305 | 1.868251 | CGAACTCGTGGCGCTCTAC | 60.868 | 63.158 | 7.64 | 3.48 | 34.11 | 2.59 |
1334 | 5367 | 1.899814 | GAGATCCGGTATGTATGGCCA | 59.100 | 52.381 | 8.56 | 8.56 | 0.00 | 5.36 |
1335 | 5368 | 2.301870 | GAGATCCGGTATGTATGGCCAA | 59.698 | 50.000 | 10.96 | 0.00 | 0.00 | 4.52 |
1352 | 5385 | 1.302033 | AAGCCACCGTGCTCTTCAG | 60.302 | 57.895 | 0.00 | 0.00 | 41.80 | 3.02 |
1398 | 5437 | 6.367969 | ACGTCTAACTTTTTATGCGTGAGATT | 59.632 | 34.615 | 0.00 | 0.00 | 30.90 | 2.40 |
1472 | 5511 | 4.831307 | CGCCCGTTCTCCGACGAG | 62.831 | 72.222 | 0.00 | 0.00 | 45.47 | 4.18 |
1717 | 5756 | 3.095278 | CGACGTCGTTGGTCACCG | 61.095 | 66.667 | 29.08 | 0.11 | 34.04 | 4.94 |
1874 | 5913 | 4.352009 | TGTTCCCCGGTGAGTAACTTATA | 58.648 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
1883 | 5922 | 8.191446 | CCCGGTGAGTAACTTATATATCATCAG | 58.809 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
1884 | 5923 | 8.740906 | CCGGTGAGTAACTTATATATCATCAGT | 58.259 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
1893 | 5932 | 9.645059 | AACTTATATATCATCAGTTCATCACCG | 57.355 | 33.333 | 0.00 | 0.00 | 0.00 | 4.94 |
1910 | 5949 | 2.592864 | GTCACCACCACCACCACA | 59.407 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
2195 | 6276 | 3.436761 | CCAAACACCCCTTTAGTACCCAA | 60.437 | 47.826 | 0.00 | 0.00 | 0.00 | 4.12 |
2196 | 6277 | 3.513909 | AACACCCCTTTAGTACCCAAC | 57.486 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
2197 | 6278 | 2.420705 | ACACCCCTTTAGTACCCAACA | 58.579 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
2198 | 6279 | 2.990998 | ACACCCCTTTAGTACCCAACAT | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
2199 | 6280 | 3.399983 | ACACCCCTTTAGTACCCAACATT | 59.600 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
2200 | 6281 | 4.140876 | ACACCCCTTTAGTACCCAACATTT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2201 | 6282 | 4.836175 | CACCCCTTTAGTACCCAACATTTT | 59.164 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2202 | 6283 | 5.305902 | CACCCCTTTAGTACCCAACATTTTT | 59.694 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2354 | 6435 | 4.592426 | AAGCGAAGGCGAAGTACC | 57.408 | 55.556 | 0.00 | 0.00 | 46.35 | 3.34 |
2355 | 6436 | 1.079336 | AAGCGAAGGCGAAGTACCC | 60.079 | 57.895 | 0.00 | 0.00 | 46.35 | 3.69 |
2356 | 6437 | 1.823169 | AAGCGAAGGCGAAGTACCCA | 61.823 | 55.000 | 0.00 | 0.00 | 46.35 | 4.51 |
2376 | 6457 | 5.046663 | ACCCAACATTTTATAGGGCAAACAG | 60.047 | 40.000 | 0.00 | 0.00 | 43.47 | 3.16 |
2391 | 6473 | 4.441356 | GGCAAACAGAAACAATCCTTCACA | 60.441 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
2405 | 6487 | 5.512942 | TCCTTCACACCCATTAAGATTGA | 57.487 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2439 | 6522 | 2.963498 | AAAGAAAACTAGGCGAACGC | 57.037 | 45.000 | 10.81 | 10.81 | 41.06 | 4.84 |
2440 | 6523 | 1.873698 | AAGAAAACTAGGCGAACGCA | 58.126 | 45.000 | 20.16 | 0.44 | 44.11 | 5.24 |
2441 | 6524 | 1.429463 | AGAAAACTAGGCGAACGCAG | 58.571 | 50.000 | 20.16 | 12.33 | 44.11 | 5.18 |
2443 | 6526 | 1.796459 | GAAAACTAGGCGAACGCAGAA | 59.204 | 47.619 | 20.16 | 4.63 | 44.11 | 3.02 |
2444 | 6527 | 2.094762 | AAACTAGGCGAACGCAGAAT | 57.905 | 45.000 | 20.16 | 6.18 | 44.11 | 2.40 |
2456 | 6543 | 7.904489 | GCGAACGCAGAATGGTAATGTTACC | 62.904 | 48.000 | 14.26 | 13.75 | 45.58 | 2.85 |
2474 | 6561 | 0.461548 | CCTAGCTGACATTCGCTGGA | 59.538 | 55.000 | 0.00 | 0.00 | 36.95 | 3.86 |
2498 | 6585 | 0.889186 | GGGTGACAAGTGAACGCCAT | 60.889 | 55.000 | 0.00 | 0.00 | 36.11 | 4.40 |
2499 | 6586 | 1.609580 | GGGTGACAAGTGAACGCCATA | 60.610 | 52.381 | 0.00 | 0.00 | 36.11 | 2.74 |
2500 | 6587 | 2.356135 | GGTGACAAGTGAACGCCATAT | 58.644 | 47.619 | 0.00 | 0.00 | 34.76 | 1.78 |
2501 | 6588 | 2.747446 | GGTGACAAGTGAACGCCATATT | 59.253 | 45.455 | 0.00 | 0.00 | 34.76 | 1.28 |
2502 | 6589 | 3.936453 | GGTGACAAGTGAACGCCATATTA | 59.064 | 43.478 | 0.00 | 0.00 | 34.76 | 0.98 |
2503 | 6590 | 4.574828 | GGTGACAAGTGAACGCCATATTAT | 59.425 | 41.667 | 0.00 | 0.00 | 34.76 | 1.28 |
2504 | 6591 | 5.501715 | GTGACAAGTGAACGCCATATTATG | 58.498 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
2505 | 6592 | 5.064707 | GTGACAAGTGAACGCCATATTATGT | 59.935 | 40.000 | 3.10 | 0.00 | 0.00 | 2.29 |
2506 | 6593 | 5.064579 | TGACAAGTGAACGCCATATTATGTG | 59.935 | 40.000 | 3.10 | 0.00 | 0.00 | 3.21 |
2507 | 6594 | 5.182487 | ACAAGTGAACGCCATATTATGTGA | 58.818 | 37.500 | 3.10 | 0.00 | 0.00 | 3.58 |
2508 | 6595 | 5.645929 | ACAAGTGAACGCCATATTATGTGAA | 59.354 | 36.000 | 3.10 | 0.00 | 0.00 | 3.18 |
2509 | 6596 | 5.734855 | AGTGAACGCCATATTATGTGAAC | 57.265 | 39.130 | 3.10 | 0.00 | 0.00 | 3.18 |
2515 | 6602 | 3.682377 | CGCCATATTATGTGAACGCCATA | 59.318 | 43.478 | 3.10 | 0.00 | 0.00 | 2.74 |
2522 | 6609 | 5.922739 | TTATGTGAACGCCATATGATGAC | 57.077 | 39.130 | 3.65 | 0.00 | 0.00 | 3.06 |
2537 | 6624 | 8.896744 | CCATATGATGACAGTTTTAGTTGTGAT | 58.103 | 33.333 | 3.65 | 0.00 | 0.00 | 3.06 |
2550 | 6637 | 9.515020 | GTTTTAGTTGTGATGAAAGATCAAACA | 57.485 | 29.630 | 0.00 | 0.00 | 39.49 | 2.83 |
2551 | 6638 | 9.734620 | TTTTAGTTGTGATGAAAGATCAAACAG | 57.265 | 29.630 | 0.00 | 0.00 | 39.49 | 3.16 |
2585 | 6672 | 5.712152 | AAACGAAAAATGCCTTCTCTGAT | 57.288 | 34.783 | 0.00 | 0.00 | 0.00 | 2.90 |
2590 | 6677 | 6.071728 | ACGAAAAATGCCTTCTCTGATGAAAT | 60.072 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2593 | 6680 | 4.650754 | ATGCCTTCTCTGATGAAATTGC | 57.349 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
2600 | 6687 | 3.624410 | TCTCTGATGAAATTGCCATGTCG | 59.376 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
2602 | 6689 | 1.134753 | TGATGAAATTGCCATGTCGCC | 59.865 | 47.619 | 0.00 | 0.00 | 0.00 | 5.54 |
2603 | 6690 | 1.134753 | GATGAAATTGCCATGTCGCCA | 59.865 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
2604 | 6691 | 0.964700 | TGAAATTGCCATGTCGCCAA | 59.035 | 45.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2605 | 6692 | 1.336702 | TGAAATTGCCATGTCGCCAAC | 60.337 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
2606 | 6693 | 0.968405 | AAATTGCCATGTCGCCAACT | 59.032 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2607 | 6694 | 0.244450 | AATTGCCATGTCGCCAACTG | 59.756 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2609 | 6696 | 1.106351 | TTGCCATGTCGCCAACTGTT | 61.106 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2618 | 6712 | 1.377987 | GCCAACTGTTATCCCCGCA | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
2665 | 6759 | 1.593265 | CAAATGCCACCCTTCCTGC | 59.407 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
2666 | 6760 | 0.901580 | CAAATGCCACCCTTCCTGCT | 60.902 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2672 | 6766 | 2.032681 | ACCCTTCCTGCTGAACGC | 59.967 | 61.111 | 0.00 | 0.00 | 39.77 | 4.84 |
2710 | 6812 | 4.998672 | CGTCCTAACAGAATTGGGTAAACA | 59.001 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
2711 | 6813 | 5.106830 | CGTCCTAACAGAATTGGGTAAACAC | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2712 | 6814 | 5.766174 | GTCCTAACAGAATTGGGTAAACACA | 59.234 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2713 | 6815 | 6.433093 | GTCCTAACAGAATTGGGTAAACACAT | 59.567 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
2714 | 6816 | 7.007723 | TCCTAACAGAATTGGGTAAACACATT | 58.992 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2715 | 6817 | 7.040062 | TCCTAACAGAATTGGGTAAACACATTG | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
2716 | 6818 | 6.478512 | AACAGAATTGGGTAAACACATTGT | 57.521 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2717 | 6819 | 6.084326 | ACAGAATTGGGTAAACACATTGTC | 57.916 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2727 | 6830 | 4.751767 | AAACACATTGTCCCACAACATT | 57.248 | 36.364 | 0.00 | 0.00 | 41.40 | 2.71 |
2739 | 6842 | 2.481104 | CCACAACATTTTTCGCCACACT | 60.481 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
2757 | 6860 | 2.230994 | CTGCTAACTCCAGCGAGCCA | 62.231 | 60.000 | 0.00 | 0.00 | 44.88 | 4.75 |
2787 | 6890 | 2.928988 | ATCGACCATCTCTCCGCCCA | 62.929 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2793 | 6896 | 2.739996 | ATCTCTCCGCCCAAGCCTG | 61.740 | 63.158 | 0.00 | 0.00 | 34.57 | 4.85 |
2813 | 6916 | 3.227276 | CCCATCGCCGCTACCTCT | 61.227 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2815 | 6918 | 2.490148 | CCATCGCCGCTACCTCTCA | 61.490 | 63.158 | 0.00 | 0.00 | 0.00 | 3.27 |
2830 | 6933 | 2.838286 | CTCAACACTGAGCCAGAGC | 58.162 | 57.895 | 8.91 | 0.00 | 42.66 | 4.09 |
2831 | 6934 | 0.673022 | CTCAACACTGAGCCAGAGCC | 60.673 | 60.000 | 8.91 | 0.00 | 42.66 | 4.70 |
2832 | 6935 | 1.071987 | CAACACTGAGCCAGAGCCA | 59.928 | 57.895 | 8.91 | 0.00 | 41.25 | 4.75 |
2833 | 6936 | 0.954449 | CAACACTGAGCCAGAGCCAG | 60.954 | 60.000 | 8.91 | 0.00 | 41.25 | 4.85 |
2850 | 6953 | 2.435586 | GTGCTCATGGCTGTCGCT | 60.436 | 61.111 | 7.54 | 0.00 | 42.39 | 4.93 |
2892 | 7594 | 0.850100 | TTTTGAGCCTCCTCCCACAA | 59.150 | 50.000 | 0.00 | 0.00 | 37.29 | 3.33 |
2894 | 7596 | 1.779061 | TTGAGCCTCCTCCCACAACC | 61.779 | 60.000 | 0.00 | 0.00 | 37.29 | 3.77 |
2909 | 7611 | 2.890766 | AACCCGAGGCACATTCCGT | 61.891 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
2931 | 7633 | 2.259204 | CTTACGCCGTCACCCGAA | 59.741 | 61.111 | 0.00 | 0.00 | 39.56 | 4.30 |
2941 | 7643 | 3.039588 | CACCCGAACCGAACCACG | 61.040 | 66.667 | 0.00 | 0.00 | 42.18 | 4.94 |
2961 | 7663 | 0.601046 | GCCATGATCATCGCCGAGAA | 60.601 | 55.000 | 13.75 | 0.00 | 0.00 | 2.87 |
2963 | 7665 | 1.730612 | CCATGATCATCGCCGAGAATG | 59.269 | 52.381 | 4.86 | 0.00 | 0.00 | 2.67 |
2970 | 7672 | 1.265095 | CATCGCCGAGAATGGGAATTG | 59.735 | 52.381 | 0.00 | 0.00 | 35.02 | 2.32 |
2971 | 7673 | 0.463654 | TCGCCGAGAATGGGAATTGG | 60.464 | 55.000 | 0.00 | 0.00 | 35.02 | 3.16 |
3205 | 7908 | 2.610694 | CGCACTCACTGGCCTTGTG | 61.611 | 63.158 | 19.01 | 19.01 | 36.82 | 3.33 |
3208 | 7911 | 1.526917 | ACTCACTGGCCTTGTGCAC | 60.527 | 57.895 | 19.89 | 10.75 | 43.89 | 4.57 |
3209 | 7912 | 2.591429 | TCACTGGCCTTGTGCACG | 60.591 | 61.111 | 19.89 | 0.00 | 43.89 | 5.34 |
3220 | 7923 | 2.095314 | CCTTGTGCACGCAATATGTTCA | 60.095 | 45.455 | 13.13 | 0.00 | 0.00 | 3.18 |
3290 | 7993 | 7.563888 | AGTGAAAGTGTAGTTTTTAGTTCCC | 57.436 | 36.000 | 0.00 | 0.00 | 0.00 | 3.97 |
3291 | 7994 | 6.544931 | AGTGAAAGTGTAGTTTTTAGTTCCCC | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 4.81 |
3292 | 7995 | 5.528320 | TGAAAGTGTAGTTTTTAGTTCCCCG | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 5.73 |
3293 | 7996 | 3.405831 | AGTGTAGTTTTTAGTTCCCCGC | 58.594 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
3294 | 7997 | 3.140623 | GTGTAGTTTTTAGTTCCCCGCA | 58.859 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
3295 | 7998 | 3.565063 | GTGTAGTTTTTAGTTCCCCGCAA | 59.435 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
3296 | 7999 | 4.036616 | GTGTAGTTTTTAGTTCCCCGCAAA | 59.963 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
3297 | 8000 | 4.643784 | TGTAGTTTTTAGTTCCCCGCAAAA | 59.356 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
3298 | 8001 | 4.739587 | AGTTTTTAGTTCCCCGCAAAAA | 57.260 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
3340 | 8043 | 9.901172 | AGTAGTGAAAGTATAGTTAAAATGGGG | 57.099 | 33.333 | 0.00 | 0.00 | 0.00 | 4.96 |
3377 | 8141 | 4.455877 | ACAAAAGAGGTGCGAATTAGAAGG | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
3378 | 8142 | 2.990066 | AGAGGTGCGAATTAGAAGGG | 57.010 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3383 | 8170 | 3.756963 | AGGTGCGAATTAGAAGGGAAAAC | 59.243 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3387 | 8174 | 4.019141 | TGCGAATTAGAAGGGAAAACCCTA | 60.019 | 41.667 | 8.30 | 0.00 | 39.63 | 3.53 |
3391 | 8178 | 6.483640 | CGAATTAGAAGGGAAAACCCTAGATG | 59.516 | 42.308 | 8.30 | 0.00 | 39.63 | 2.90 |
3534 | 8321 | 2.554272 | CGGCCTTTTCGTCGGTTG | 59.446 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
3579 | 8368 | 0.996462 | TAAATGCCTCGCTCGAAACG | 59.004 | 50.000 | 1.24 | 1.24 | 0.00 | 3.60 |
3669 | 8458 | 2.880719 | TTTTGCCACGCACAGCACAC | 62.881 | 55.000 | 0.00 | 0.00 | 38.71 | 3.82 |
3713 | 8502 | 3.558411 | GCACGCTCAGTCCATCGC | 61.558 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
3720 | 8509 | 2.653448 | CAGTCCATCGCTCGCTCG | 60.653 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
3940 | 8730 | 4.752514 | GGTTGACGATCCCGATCC | 57.247 | 61.111 | 0.00 | 0.00 | 39.50 | 3.36 |
3955 | 8746 | 3.587923 | CCGATCCAGTTTTTACCGTGTA | 58.412 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3956 | 8747 | 3.615496 | CCGATCCAGTTTTTACCGTGTAG | 59.385 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
3957 | 8748 | 4.240096 | CGATCCAGTTTTTACCGTGTAGT | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
3958 | 8749 | 5.401550 | CGATCCAGTTTTTACCGTGTAGTA | 58.598 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3959 | 8750 | 5.514204 | CGATCCAGTTTTTACCGTGTAGTAG | 59.486 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3991 | 8948 | 4.746115 | AGTAATGTTTCGCTCGTGTGTTTA | 59.254 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
3995 | 8952 | 4.911053 | TGTTTCGCTCGTGTGTTTATTTT | 58.089 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
4103 | 9060 | 2.818274 | GAGGTGGCGGCCTTTACG | 60.818 | 66.667 | 21.46 | 0.00 | 39.34 | 3.18 |
4279 | 9236 | 4.720273 | ACTTACATAGATTTCCTCGGGGTT | 59.280 | 41.667 | 0.00 | 0.00 | 0.00 | 4.11 |
4458 | 9446 | 4.748102 | TGCCACTCTACTTGTTTTAACTCG | 59.252 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
4488 | 9476 | 3.713858 | TGAACATCAGCTTGTGTTTGG | 57.286 | 42.857 | 13.15 | 0.00 | 38.57 | 3.28 |
4489 | 9477 | 3.286353 | TGAACATCAGCTTGTGTTTGGA | 58.714 | 40.909 | 13.15 | 0.00 | 38.57 | 3.53 |
4490 | 9478 | 3.698539 | TGAACATCAGCTTGTGTTTGGAA | 59.301 | 39.130 | 13.15 | 0.84 | 38.57 | 3.53 |
4491 | 9479 | 4.341806 | TGAACATCAGCTTGTGTTTGGAAT | 59.658 | 37.500 | 13.15 | 0.00 | 38.57 | 3.01 |
4492 | 9480 | 4.510038 | ACATCAGCTTGTGTTTGGAATC | 57.490 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
4493 | 9481 | 3.890756 | ACATCAGCTTGTGTTTGGAATCA | 59.109 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
4494 | 9482 | 4.341806 | ACATCAGCTTGTGTTTGGAATCAA | 59.658 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
4495 | 9483 | 4.305989 | TCAGCTTGTGTTTGGAATCAAC | 57.694 | 40.909 | 0.00 | 0.00 | 31.78 | 3.18 |
4496 | 9484 | 3.068024 | TCAGCTTGTGTTTGGAATCAACC | 59.932 | 43.478 | 0.00 | 0.00 | 31.78 | 3.77 |
4497 | 9485 | 3.030291 | AGCTTGTGTTTGGAATCAACCA | 58.970 | 40.909 | 0.00 | 0.00 | 38.24 | 3.67 |
4498 | 9486 | 3.450457 | AGCTTGTGTTTGGAATCAACCAA | 59.550 | 39.130 | 0.00 | 0.00 | 46.44 | 3.67 |
4504 | 9492 | 6.623916 | TGTGTTTGGAATCAACCAATCCACA | 61.624 | 40.000 | 19.52 | 19.52 | 46.79 | 4.17 |
4505 | 9493 | 8.353282 | TGTGTTTGGAATCAACCAATCCACAG | 62.353 | 42.308 | 19.52 | 0.00 | 45.68 | 3.66 |
4506 | 9494 | 3.524095 | TGGAATCAACCAATCCACAGT | 57.476 | 42.857 | 0.00 | 0.00 | 38.30 | 3.55 |
4507 | 9495 | 3.843422 | TGGAATCAACCAATCCACAGTT | 58.157 | 40.909 | 0.00 | 0.00 | 38.30 | 3.16 |
4508 | 9496 | 3.826157 | TGGAATCAACCAATCCACAGTTC | 59.174 | 43.478 | 0.00 | 0.00 | 38.30 | 3.01 |
4509 | 9497 | 3.119849 | GGAATCAACCAATCCACAGTTCG | 60.120 | 47.826 | 0.00 | 0.00 | 33.30 | 3.95 |
4510 | 9498 | 1.234821 | TCAACCAATCCACAGTTCGC | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4511 | 9499 | 0.110238 | CAACCAATCCACAGTTCGCG | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 5.87 |
4512 | 9500 | 1.234615 | AACCAATCCACAGTTCGCGG | 61.235 | 55.000 | 6.13 | 0.00 | 0.00 | 6.46 |
4513 | 9501 | 1.671054 | CCAATCCACAGTTCGCGGT | 60.671 | 57.895 | 6.13 | 0.00 | 0.00 | 5.68 |
4514 | 9502 | 1.497278 | CAATCCACAGTTCGCGGTG | 59.503 | 57.895 | 6.13 | 6.22 | 41.83 | 4.94 |
4518 | 9506 | 2.738521 | CACAGTTCGCGGTGGAGG | 60.739 | 66.667 | 6.13 | 0.00 | 39.17 | 4.30 |
4519 | 9507 | 2.915659 | ACAGTTCGCGGTGGAGGA | 60.916 | 61.111 | 6.13 | 0.00 | 0.00 | 3.71 |
4520 | 9508 | 2.283529 | ACAGTTCGCGGTGGAGGAT | 61.284 | 57.895 | 6.13 | 0.00 | 0.00 | 3.24 |
4521 | 9509 | 1.811266 | CAGTTCGCGGTGGAGGATG | 60.811 | 63.158 | 6.13 | 0.00 | 0.00 | 3.51 |
4522 | 9510 | 2.511600 | GTTCGCGGTGGAGGATGG | 60.512 | 66.667 | 6.13 | 0.00 | 0.00 | 3.51 |
4523 | 9511 | 2.682136 | TTCGCGGTGGAGGATGGA | 60.682 | 61.111 | 6.13 | 0.00 | 0.00 | 3.41 |
4524 | 9512 | 2.287274 | TTCGCGGTGGAGGATGGAA | 61.287 | 57.895 | 6.13 | 0.00 | 0.00 | 3.53 |
4525 | 9513 | 1.832719 | TTCGCGGTGGAGGATGGAAA | 61.833 | 55.000 | 6.13 | 0.00 | 0.00 | 3.13 |
4526 | 9514 | 2.106683 | CGCGGTGGAGGATGGAAAC | 61.107 | 63.158 | 0.00 | 0.00 | 0.00 | 2.78 |
4527 | 9515 | 1.299976 | GCGGTGGAGGATGGAAACT | 59.700 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
4528 | 9516 | 1.026718 | GCGGTGGAGGATGGAAACTG | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4529 | 9517 | 1.026718 | CGGTGGAGGATGGAAACTGC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4530 | 9518 | 0.329596 | GGTGGAGGATGGAAACTGCT | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4531 | 9519 | 1.457346 | GTGGAGGATGGAAACTGCTG | 58.543 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
4532 | 9520 | 1.003580 | GTGGAGGATGGAAACTGCTGA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
4533 | 9521 | 1.704628 | TGGAGGATGGAAACTGCTGAA | 59.295 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4534 | 9522 | 2.290514 | TGGAGGATGGAAACTGCTGAAG | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4535 | 9523 | 2.290577 | GGAGGATGGAAACTGCTGAAGT | 60.291 | 50.000 | 0.00 | 0.00 | 42.60 | 3.01 |
4542 | 9530 | 3.027419 | AACTGCTGAAGTTCCCAGC | 57.973 | 52.632 | 16.33 | 13.06 | 46.60 | 4.85 |
4546 | 9534 | 3.972227 | CTGAAGTTCCCAGCACGG | 58.028 | 61.111 | 0.00 | 0.00 | 0.00 | 4.94 |
4547 | 9535 | 1.371183 | CTGAAGTTCCCAGCACGGA | 59.629 | 57.895 | 0.00 | 0.00 | 36.56 | 4.69 |
4548 | 9536 | 0.036010 | CTGAAGTTCCCAGCACGGAT | 60.036 | 55.000 | 0.00 | 0.00 | 36.56 | 4.18 |
4549 | 9537 | 0.321564 | TGAAGTTCCCAGCACGGATG | 60.322 | 55.000 | 0.00 | 0.00 | 36.56 | 3.51 |
4550 | 9538 | 0.036388 | GAAGTTCCCAGCACGGATGA | 60.036 | 55.000 | 0.00 | 0.00 | 36.56 | 2.92 |
4551 | 9539 | 0.620556 | AAGTTCCCAGCACGGATGAT | 59.379 | 50.000 | 0.00 | 0.00 | 36.56 | 2.45 |
4552 | 9540 | 0.107508 | AGTTCCCAGCACGGATGATG | 60.108 | 55.000 | 0.00 | 0.00 | 42.12 | 3.07 |
4556 | 9544 | 2.512286 | CAGCACGGATGATGGCGT | 60.512 | 61.111 | 0.00 | 0.00 | 38.63 | 5.68 |
4557 | 9545 | 2.108514 | CAGCACGGATGATGGCGTT | 61.109 | 57.895 | 0.00 | 0.00 | 38.63 | 4.84 |
4558 | 9546 | 2.108514 | AGCACGGATGATGGCGTTG | 61.109 | 57.895 | 0.00 | 0.00 | 0.00 | 4.10 |
4559 | 9547 | 2.404789 | CACGGATGATGGCGTTGC | 59.595 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
4600 | 9588 | 3.771160 | GACACGGTGGGCGATCCT | 61.771 | 66.667 | 13.48 | 0.00 | 36.20 | 3.24 |
4664 | 9652 | 0.248289 | GGTAAAGCTGCTCCGGTACA | 59.752 | 55.000 | 1.00 | 0.00 | 0.00 | 2.90 |
4750 | 9738 | 2.819550 | GTGGACACACGGACCAGT | 59.180 | 61.111 | 0.00 | 0.00 | 37.94 | 4.00 |
4762 | 9750 | 1.198759 | GGACCAGTGGAGGGCTTGTA | 61.199 | 60.000 | 18.40 | 0.00 | 36.69 | 2.41 |
4763 | 9751 | 0.690762 | GACCAGTGGAGGGCTTGTAA | 59.309 | 55.000 | 18.40 | 0.00 | 32.29 | 2.41 |
4765 | 9753 | 1.710809 | ACCAGTGGAGGGCTTGTAATT | 59.289 | 47.619 | 18.40 | 0.00 | 0.00 | 1.40 |
4891 | 9879 | 4.980592 | TGGAGAGGGGCTGTGGCA | 62.981 | 66.667 | 0.00 | 0.00 | 40.87 | 4.92 |
4906 | 9894 | 1.497286 | GTGGCAGGTGGGGGATTAATA | 59.503 | 52.381 | 0.00 | 0.00 | 0.00 | 0.98 |
4972 | 9972 | 2.378634 | CCACACCCCATCTCCTCCC | 61.379 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
5013 | 10025 | 1.309950 | GATGGTGGAGATCGACGAGA | 58.690 | 55.000 | 3.01 | 0.00 | 0.00 | 4.04 |
5153 | 10165 | 0.757188 | ATCTTCGAGGGGCTGACGAT | 60.757 | 55.000 | 0.00 | 0.00 | 36.02 | 3.73 |
5199 | 10211 | 4.021925 | GGAAGACGCAGGCACCCT | 62.022 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
5286 | 10299 | 0.320374 | TGGCGTTCACCTCTTTCGAT | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
5289 | 10302 | 2.416972 | GGCGTTCACCTCTTTCGATACT | 60.417 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 8.781196 | CACCTGATGATCTCGAAAATTATGATT | 58.219 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
47 | 48 | 2.028203 | TGTGCACCTGATGATCTCGAAA | 60.028 | 45.455 | 15.69 | 0.00 | 0.00 | 3.46 |
68 | 69 | 6.490381 | TCCATAAGATCAATGAGTAGCTACGT | 59.510 | 38.462 | 17.99 | 6.88 | 0.00 | 3.57 |
71 | 72 | 6.494835 | TGCTCCATAAGATCAATGAGTAGCTA | 59.505 | 38.462 | 19.02 | 0.00 | 31.41 | 3.32 |
73 | 74 | 5.545588 | TGCTCCATAAGATCAATGAGTAGC | 58.454 | 41.667 | 9.09 | 12.88 | 0.00 | 3.58 |
89 | 90 | 1.521764 | TGGGTCCACATATGCTCCAT | 58.478 | 50.000 | 1.58 | 0.00 | 0.00 | 3.41 |
175 | 176 | 7.958567 | ACACGTAAATAACAAATGTTGATACCG | 59.041 | 33.333 | 8.99 | 8.07 | 38.90 | 4.02 |
180 | 181 | 7.694886 | TGTCACACGTAAATAACAAATGTTGA | 58.305 | 30.769 | 8.99 | 0.00 | 38.90 | 3.18 |
201 | 202 | 4.242475 | GTCCATCTTACACGTCAATGTCA | 58.758 | 43.478 | 0.00 | 0.00 | 33.85 | 3.58 |
216 | 217 | 2.019249 | CAAATCCATGCACGTCCATCT | 58.981 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
241 | 242 | 3.452627 | ACATACCTCAAATCCGAGCTCTT | 59.547 | 43.478 | 12.85 | 0.00 | 0.00 | 2.85 |
246 | 252 | 2.158900 | AGCCACATACCTCAAATCCGAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
247 | 253 | 1.837439 | AGCCACATACCTCAAATCCGA | 59.163 | 47.619 | 0.00 | 0.00 | 0.00 | 4.55 |
271 | 277 | 1.767759 | GCCCCTCATATGTTGTGCTT | 58.232 | 50.000 | 1.90 | 0.00 | 0.00 | 3.91 |
272 | 278 | 0.464373 | CGCCCCTCATATGTTGTGCT | 60.464 | 55.000 | 1.90 | 0.00 | 0.00 | 4.40 |
276 | 282 | 0.535102 | GGACCGCCCCTCATATGTTG | 60.535 | 60.000 | 1.90 | 0.00 | 0.00 | 3.33 |
327 | 333 | 0.099259 | CGGTCAACTATACGTCCGCA | 59.901 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
404 | 410 | 8.086522 | GCTAAAGTTTACTCCCATATCGATACA | 58.913 | 37.037 | 7.41 | 0.00 | 0.00 | 2.29 |
444 | 450 | 8.738645 | AATCTCAAAGAGACCCATGTATAAAC | 57.261 | 34.615 | 0.00 | 0.00 | 41.76 | 2.01 |
519 | 3997 | 7.280876 | CCGGGGTAAAAAGTTAAGAAGGTATAC | 59.719 | 40.741 | 0.00 | 0.00 | 0.00 | 1.47 |
731 | 4758 | 0.654683 | CTAAATGCAGGAGTCGCAGC | 59.345 | 55.000 | 0.00 | 0.00 | 43.88 | 5.25 |
788 | 4815 | 5.068067 | GCTTTTCTTAACCCAAACCTACACA | 59.932 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
912 | 4945 | 1.227380 | CGGGCTAGTGATCAGTGCC | 60.227 | 63.158 | 24.51 | 24.51 | 42.56 | 5.01 |
913 | 4946 | 1.884926 | GCGGGCTAGTGATCAGTGC | 60.885 | 63.158 | 13.54 | 13.48 | 0.00 | 4.40 |
920 | 4953 | 2.882876 | GAACGAGCGGGCTAGTGA | 59.117 | 61.111 | 7.19 | 0.00 | 32.42 | 3.41 |
921 | 4954 | 2.337749 | ATCGAACGAGCGGGCTAGTG | 62.338 | 60.000 | 7.19 | 0.00 | 32.42 | 2.74 |
922 | 4955 | 1.664321 | AATCGAACGAGCGGGCTAGT | 61.664 | 55.000 | 0.32 | 0.32 | 33.42 | 2.57 |
970 | 5003 | 1.467342 | GCCAGCGTCGACCTAATTTTT | 59.533 | 47.619 | 10.58 | 0.00 | 0.00 | 1.94 |
971 | 5004 | 1.084289 | GCCAGCGTCGACCTAATTTT | 58.916 | 50.000 | 10.58 | 0.00 | 0.00 | 1.82 |
972 | 5005 | 0.249398 | AGCCAGCGTCGACCTAATTT | 59.751 | 50.000 | 10.58 | 0.00 | 0.00 | 1.82 |
989 | 5022 | 1.449353 | CTAGGCATCCCAGGACAGC | 59.551 | 63.158 | 4.74 | 4.74 | 0.00 | 4.40 |
993 | 5026 | 2.434843 | CGTGCTAGGCATCCCAGGA | 61.435 | 63.158 | 0.00 | 0.00 | 41.91 | 3.86 |
994 | 5027 | 2.109799 | CGTGCTAGGCATCCCAGG | 59.890 | 66.667 | 0.00 | 0.00 | 41.91 | 4.45 |
995 | 5028 | 1.227380 | GACGTGCTAGGCATCCCAG | 60.227 | 63.158 | 0.00 | 0.00 | 41.91 | 4.45 |
1176 | 5209 | 1.143620 | GCTACTGCTGCTCTCCTGG | 59.856 | 63.158 | 0.00 | 0.00 | 36.03 | 4.45 |
1272 | 5305 | 3.646715 | TTCCAGTTCTGGGGGCCG | 61.647 | 66.667 | 17.37 | 0.00 | 0.00 | 6.13 |
1334 | 5367 | 1.302033 | CTGAAGAGCACGGTGGCTT | 60.302 | 57.895 | 10.60 | 0.00 | 45.99 | 4.35 |
1348 | 5381 | 7.706607 | GTCATAGTGTTATGTACATGAGCTGAA | 59.293 | 37.037 | 18.81 | 0.33 | 39.39 | 3.02 |
1352 | 5385 | 5.977725 | ACGTCATAGTGTTATGTACATGAGC | 59.022 | 40.000 | 18.81 | 8.61 | 39.39 | 4.26 |
1355 | 5388 | 8.955002 | GTTAGACGTCATAGTGTTATGTACATG | 58.045 | 37.037 | 19.50 | 0.35 | 39.39 | 3.21 |
1364 | 5397 | 8.440833 | GCATAAAAAGTTAGACGTCATAGTGTT | 58.559 | 33.333 | 19.50 | 6.36 | 0.00 | 3.32 |
1387 | 5426 | 1.833630 | TCTTCCCTGAATCTCACGCAT | 59.166 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
1398 | 5437 | 2.650116 | GCCGACAGCTCTTCCCTGA | 61.650 | 63.158 | 0.00 | 0.00 | 38.99 | 3.86 |
1472 | 5511 | 1.120795 | CCATCAGCCTCTCCTCCTCC | 61.121 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1562 | 5601 | 1.133823 | ACATGCCAGTGGTTCTTGACA | 60.134 | 47.619 | 11.74 | 0.00 | 0.00 | 3.58 |
1717 | 5756 | 2.282462 | CCAGGAGGTGGTTGTGGC | 60.282 | 66.667 | 0.00 | 0.00 | 42.17 | 5.01 |
1755 | 5794 | 1.447314 | CGTAGGGGTCCGCAAAGAC | 60.447 | 63.158 | 8.89 | 0.06 | 35.95 | 3.01 |
1874 | 5913 | 5.292765 | GTGACGGTGATGAACTGATGATAT | 58.707 | 41.667 | 0.00 | 0.00 | 38.65 | 1.63 |
1883 | 5922 | 0.250124 | TGGTGGTGACGGTGATGAAC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1884 | 5923 | 0.250124 | GTGGTGGTGACGGTGATGAA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1885 | 5924 | 1.369692 | GTGGTGGTGACGGTGATGA | 59.630 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
1886 | 5925 | 1.671054 | GGTGGTGGTGACGGTGATG | 60.671 | 63.158 | 0.00 | 0.00 | 0.00 | 3.07 |
1887 | 5926 | 2.144078 | TGGTGGTGGTGACGGTGAT | 61.144 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
1888 | 5927 | 2.764547 | TGGTGGTGGTGACGGTGA | 60.765 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
1889 | 5928 | 2.590575 | GTGGTGGTGGTGACGGTG | 60.591 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1890 | 5929 | 3.868985 | GGTGGTGGTGGTGACGGT | 61.869 | 66.667 | 0.00 | 0.00 | 0.00 | 4.83 |
1891 | 5930 | 3.867783 | TGGTGGTGGTGGTGACGG | 61.868 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1892 | 5931 | 2.590575 | GTGGTGGTGGTGGTGACG | 60.591 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1893 | 5932 | 1.077357 | TTGTGGTGGTGGTGGTGAC | 60.077 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
1910 | 5949 | 5.301298 | AGAAAATCTACCGCCTCTATACGTT | 59.699 | 40.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2076 | 6126 | 7.398332 | ACCCTCCTAAGAAAACGTAGAAATCTA | 59.602 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2144 | 6225 | 8.917414 | AGTTAGATGCCTTATAATCCCAGATA | 57.083 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2146 | 6227 | 7.633018 | AAGTTAGATGCCTTATAATCCCAGA | 57.367 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2156 | 6237 | 6.826741 | GGTGTTTGGATAAGTTAGATGCCTTA | 59.173 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
2337 | 6418 | 1.079336 | GGGTACTTCGCCTTCGCTT | 60.079 | 57.895 | 0.00 | 0.00 | 35.26 | 4.68 |
2338 | 6419 | 1.823169 | TTGGGTACTTCGCCTTCGCT | 61.823 | 55.000 | 0.00 | 0.00 | 35.26 | 4.93 |
2339 | 6420 | 1.375013 | TTGGGTACTTCGCCTTCGC | 60.375 | 57.895 | 0.00 | 0.00 | 35.26 | 4.70 |
2340 | 6421 | 0.320073 | TGTTGGGTACTTCGCCTTCG | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2341 | 6422 | 2.109425 | ATGTTGGGTACTTCGCCTTC | 57.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2342 | 6423 | 2.579410 | AATGTTGGGTACTTCGCCTT | 57.421 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2343 | 6424 | 2.579410 | AAATGTTGGGTACTTCGCCT | 57.421 | 45.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2344 | 6425 | 4.976224 | ATAAAATGTTGGGTACTTCGCC | 57.024 | 40.909 | 0.00 | 0.00 | 0.00 | 5.54 |
2345 | 6426 | 5.008316 | CCCTATAAAATGTTGGGTACTTCGC | 59.992 | 44.000 | 0.00 | 0.00 | 33.49 | 4.70 |
2346 | 6427 | 5.008316 | GCCCTATAAAATGTTGGGTACTTCG | 59.992 | 44.000 | 0.00 | 0.00 | 39.97 | 3.79 |
2347 | 6428 | 5.889289 | TGCCCTATAAAATGTTGGGTACTTC | 59.111 | 40.000 | 0.00 | 0.00 | 39.97 | 3.01 |
2348 | 6429 | 5.833340 | TGCCCTATAAAATGTTGGGTACTT | 58.167 | 37.500 | 0.00 | 0.00 | 39.97 | 2.24 |
2349 | 6430 | 5.459982 | TGCCCTATAAAATGTTGGGTACT | 57.540 | 39.130 | 0.00 | 0.00 | 39.97 | 2.73 |
2350 | 6431 | 6.071278 | TGTTTGCCCTATAAAATGTTGGGTAC | 60.071 | 38.462 | 0.00 | 0.00 | 39.97 | 3.34 |
2351 | 6432 | 6.017192 | TGTTTGCCCTATAAAATGTTGGGTA | 58.983 | 36.000 | 0.00 | 0.00 | 39.97 | 3.69 |
2352 | 6433 | 4.841246 | TGTTTGCCCTATAAAATGTTGGGT | 59.159 | 37.500 | 0.00 | 0.00 | 39.97 | 4.51 |
2353 | 6434 | 5.186797 | TCTGTTTGCCCTATAAAATGTTGGG | 59.813 | 40.000 | 0.00 | 0.00 | 40.74 | 4.12 |
2354 | 6435 | 6.279513 | TCTGTTTGCCCTATAAAATGTTGG | 57.720 | 37.500 | 0.00 | 0.00 | 0.00 | 3.77 |
2355 | 6436 | 7.655328 | TGTTTCTGTTTGCCCTATAAAATGTTG | 59.345 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2356 | 6437 | 7.731054 | TGTTTCTGTTTGCCCTATAAAATGTT | 58.269 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
2376 | 6457 | 4.871933 | AATGGGTGTGAAGGATTGTTTC | 57.128 | 40.909 | 0.00 | 0.00 | 0.00 | 2.78 |
2391 | 6473 | 4.220602 | GGTGTTTGCTCAATCTTAATGGGT | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 4.51 |
2456 | 6543 | 2.159184 | TCTTCCAGCGAATGTCAGCTAG | 60.159 | 50.000 | 0.00 | 0.00 | 42.52 | 3.42 |
2457 | 6544 | 1.824852 | TCTTCCAGCGAATGTCAGCTA | 59.175 | 47.619 | 0.00 | 0.00 | 42.52 | 3.32 |
2465 | 6552 | 0.909610 | TCACCCCTCTTCCAGCGAAT | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2468 | 6555 | 2.111999 | TTGTCACCCCTCTTCCAGCG | 62.112 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2474 | 6561 | 1.202651 | CGTTCACTTGTCACCCCTCTT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
2498 | 6585 | 7.158021 | TGTCATCATATGGCGTTCACATAATA | 58.842 | 34.615 | 2.13 | 0.00 | 37.81 | 0.98 |
2499 | 6586 | 5.997129 | TGTCATCATATGGCGTTCACATAAT | 59.003 | 36.000 | 2.13 | 0.00 | 37.81 | 1.28 |
2500 | 6587 | 5.363939 | TGTCATCATATGGCGTTCACATAA | 58.636 | 37.500 | 2.13 | 0.00 | 37.81 | 1.90 |
2501 | 6588 | 4.954875 | TGTCATCATATGGCGTTCACATA | 58.045 | 39.130 | 2.13 | 0.00 | 37.81 | 2.29 |
2502 | 6589 | 3.807553 | TGTCATCATATGGCGTTCACAT | 58.192 | 40.909 | 2.13 | 0.00 | 37.81 | 3.21 |
2503 | 6590 | 3.197265 | CTGTCATCATATGGCGTTCACA | 58.803 | 45.455 | 2.13 | 0.00 | 37.81 | 3.58 |
2504 | 6591 | 3.198068 | ACTGTCATCATATGGCGTTCAC | 58.802 | 45.455 | 2.13 | 0.00 | 37.81 | 3.18 |
2505 | 6592 | 3.541996 | ACTGTCATCATATGGCGTTCA | 57.458 | 42.857 | 2.13 | 0.00 | 37.81 | 3.18 |
2506 | 6593 | 4.882671 | AAACTGTCATCATATGGCGTTC | 57.117 | 40.909 | 2.13 | 0.00 | 37.81 | 3.95 |
2507 | 6594 | 5.880332 | ACTAAAACTGTCATCATATGGCGTT | 59.120 | 36.000 | 2.13 | 0.00 | 37.81 | 4.84 |
2508 | 6595 | 5.428253 | ACTAAAACTGTCATCATATGGCGT | 58.572 | 37.500 | 2.13 | 0.00 | 37.81 | 5.68 |
2509 | 6596 | 5.991328 | ACTAAAACTGTCATCATATGGCG | 57.009 | 39.130 | 2.13 | 0.00 | 37.81 | 5.69 |
2515 | 6602 | 7.984422 | TCATCACAACTAAAACTGTCATCAT | 57.016 | 32.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2522 | 6609 | 9.734620 | TTTGATCTTTCATCACAACTAAAACTG | 57.265 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2537 | 6624 | 3.466836 | ACTGTCGCTGTTTGATCTTTCA | 58.533 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2550 | 6637 | 6.507299 | GCATTTTTCGTTTTAAAACTGTCGCT | 60.507 | 34.615 | 24.57 | 6.80 | 36.77 | 4.93 |
2551 | 6638 | 5.610013 | GCATTTTTCGTTTTAAAACTGTCGC | 59.390 | 36.000 | 24.57 | 15.12 | 36.77 | 5.19 |
2593 | 6680 | 1.670811 | GGATAACAGTTGGCGACATGG | 59.329 | 52.381 | 7.78 | 0.00 | 42.32 | 3.66 |
2600 | 6687 | 1.377987 | TGCGGGGATAACAGTTGGC | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
2602 | 6689 | 1.199097 | GTTGTGCGGGGATAACAGTTG | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2603 | 6690 | 1.073284 | AGTTGTGCGGGGATAACAGTT | 59.927 | 47.619 | 3.02 | 0.00 | 0.00 | 3.16 |
2604 | 6691 | 0.690762 | AGTTGTGCGGGGATAACAGT | 59.309 | 50.000 | 3.02 | 0.00 | 0.00 | 3.55 |
2605 | 6692 | 2.684001 | TAGTTGTGCGGGGATAACAG | 57.316 | 50.000 | 3.02 | 0.00 | 0.00 | 3.16 |
2606 | 6693 | 3.420300 | TTTAGTTGTGCGGGGATAACA | 57.580 | 42.857 | 3.02 | 0.00 | 0.00 | 2.41 |
2607 | 6694 | 4.769859 | TTTTTAGTTGTGCGGGGATAAC | 57.230 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
2609 | 6696 | 3.129638 | GCATTTTTAGTTGTGCGGGGATA | 59.870 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2618 | 6712 | 7.430441 | ACGTTTTAGATGGCATTTTTAGTTGT | 58.570 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
2665 | 6759 | 0.647410 | CATAACTGGCGAGCGTTCAG | 59.353 | 55.000 | 0.00 | 11.56 | 34.91 | 3.02 |
2666 | 6760 | 0.245266 | TCATAACTGGCGAGCGTTCA | 59.755 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2710 | 6812 | 4.367450 | CGAAAAATGTTGTGGGACAATGT | 58.633 | 39.130 | 0.00 | 0.00 | 44.16 | 2.71 |
2711 | 6813 | 3.184178 | GCGAAAAATGTTGTGGGACAATG | 59.816 | 43.478 | 0.00 | 0.00 | 44.16 | 2.82 |
2712 | 6814 | 3.389221 | GCGAAAAATGTTGTGGGACAAT | 58.611 | 40.909 | 0.00 | 0.00 | 44.16 | 2.71 |
2713 | 6815 | 2.482142 | GGCGAAAAATGTTGTGGGACAA | 60.482 | 45.455 | 0.00 | 0.00 | 44.16 | 3.18 |
2714 | 6816 | 1.067821 | GGCGAAAAATGTTGTGGGACA | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2715 | 6817 | 1.067821 | TGGCGAAAAATGTTGTGGGAC | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
2716 | 6818 | 1.067821 | GTGGCGAAAAATGTTGTGGGA | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
2717 | 6819 | 1.202463 | TGTGGCGAAAAATGTTGTGGG | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
2727 | 6830 | 1.871039 | GAGTTAGCAGTGTGGCGAAAA | 59.129 | 47.619 | 0.00 | 0.00 | 39.27 | 2.29 |
2739 | 6842 | 1.617018 | ATGGCTCGCTGGAGTTAGCA | 61.617 | 55.000 | 0.00 | 0.00 | 43.87 | 3.49 |
2787 | 6890 | 4.496336 | GGCGATGGGAGCAGGCTT | 62.496 | 66.667 | 0.00 | 0.00 | 36.08 | 4.35 |
2793 | 6896 | 4.971125 | GGTAGCGGCGATGGGAGC | 62.971 | 72.222 | 12.98 | 0.00 | 0.00 | 4.70 |
2813 | 6916 | 1.372683 | GGCTCTGGCTCAGTGTTGA | 59.627 | 57.895 | 2.68 | 0.00 | 38.73 | 3.18 |
2815 | 6918 | 1.374190 | CTGGCTCTGGCTCAGTGTT | 59.626 | 57.895 | 2.68 | 0.00 | 38.73 | 3.32 |
2856 | 6959 | 2.864770 | AAAGTTGGCGGTGGTTGGGT | 62.865 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2892 | 7594 | 3.319198 | ACGGAATGTGCCTCGGGT | 61.319 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
2920 | 7622 | 2.735857 | GTTCGGTTCGGGTGACGG | 60.736 | 66.667 | 0.00 | 0.00 | 44.45 | 4.79 |
2923 | 7625 | 2.422591 | GTGGTTCGGTTCGGGTGA | 59.577 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
2934 | 7636 | 0.947244 | GATGATCATGGCCGTGGTTC | 59.053 | 55.000 | 24.78 | 20.39 | 0.00 | 3.62 |
2945 | 7647 | 1.338484 | CCCATTCTCGGCGATGATCAT | 60.338 | 52.381 | 11.27 | 8.25 | 0.00 | 2.45 |
2946 | 7648 | 0.033920 | CCCATTCTCGGCGATGATCA | 59.966 | 55.000 | 11.27 | 0.00 | 0.00 | 2.92 |
3187 | 7889 | 2.281070 | ACAAGGCCAGTGAGTGCG | 60.281 | 61.111 | 5.01 | 0.00 | 0.00 | 5.34 |
3205 | 7908 | 3.419264 | TCCATTGAACATATTGCGTGC | 57.581 | 42.857 | 0.00 | 0.00 | 0.00 | 5.34 |
3208 | 7911 | 6.063640 | TCTCATTCCATTGAACATATTGCG | 57.936 | 37.500 | 0.00 | 0.00 | 32.13 | 4.85 |
3209 | 7912 | 9.784680 | GATATCTCATTCCATTGAACATATTGC | 57.215 | 33.333 | 0.00 | 0.00 | 32.13 | 3.56 |
3264 | 7967 | 9.281371 | GGGAACTAAAAACTACACTTTCACTAT | 57.719 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3265 | 7968 | 7.716560 | GGGGAACTAAAAACTACACTTTCACTA | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3266 | 7969 | 6.544931 | GGGGAACTAAAAACTACACTTTCACT | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
3267 | 7970 | 6.512253 | CGGGGAACTAAAAACTACACTTTCAC | 60.512 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
3268 | 7971 | 5.528320 | CGGGGAACTAAAAACTACACTTTCA | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3269 | 7972 | 5.561532 | GCGGGGAACTAAAAACTACACTTTC | 60.562 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3270 | 7973 | 4.276678 | GCGGGGAACTAAAAACTACACTTT | 59.723 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
3271 | 7974 | 3.817084 | GCGGGGAACTAAAAACTACACTT | 59.183 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3272 | 7975 | 3.181452 | TGCGGGGAACTAAAAACTACACT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
3273 | 7976 | 3.140623 | TGCGGGGAACTAAAAACTACAC | 58.859 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3274 | 7977 | 3.488778 | TGCGGGGAACTAAAAACTACA | 57.511 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
3275 | 7978 | 4.834357 | TTTGCGGGGAACTAAAAACTAC | 57.166 | 40.909 | 0.00 | 0.00 | 0.00 | 2.73 |
3276 | 7979 | 5.848833 | TTTTTGCGGGGAACTAAAAACTA | 57.151 | 34.783 | 0.00 | 0.00 | 29.87 | 2.24 |
3277 | 7980 | 4.739587 | TTTTTGCGGGGAACTAAAAACT | 57.260 | 36.364 | 0.00 | 0.00 | 29.87 | 2.66 |
3315 | 8018 | 9.676861 | ACCCCATTTTAACTATACTTTCACTAC | 57.323 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
3346 | 8049 | 6.621316 | TTCGCACCTCTTTTGTATGTAAAA | 57.379 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
3347 | 8050 | 6.811253 | ATTCGCACCTCTTTTGTATGTAAA | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3377 | 8141 | 6.071896 | CCTCAAAACTTCATCTAGGGTTTTCC | 60.072 | 42.308 | 0.00 | 0.00 | 39.04 | 3.13 |
3378 | 8142 | 6.715264 | TCCTCAAAACTTCATCTAGGGTTTTC | 59.285 | 38.462 | 0.00 | 0.00 | 39.04 | 2.29 |
3383 | 8170 | 4.578105 | GCATCCTCAAAACTTCATCTAGGG | 59.422 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
3387 | 8174 | 4.699257 | GTCAGCATCCTCAAAACTTCATCT | 59.301 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3391 | 8178 | 2.413371 | GCGTCAGCATCCTCAAAACTTC | 60.413 | 50.000 | 0.00 | 0.00 | 44.35 | 3.01 |
3583 | 8372 | 3.127533 | GTCTCACGCCCACATGCC | 61.128 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
3669 | 8458 | 2.202797 | CGGGAGGATCACTGTGCG | 60.203 | 66.667 | 2.12 | 0.00 | 35.27 | 5.34 |
3698 | 8487 | 2.492090 | GAGCGATGGACTGAGCGT | 59.508 | 61.111 | 0.00 | 0.00 | 34.34 | 5.07 |
3700 | 8489 | 2.959071 | GCGAGCGATGGACTGAGC | 60.959 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
3701 | 8490 | 1.299014 | GAGCGAGCGATGGACTGAG | 60.299 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
3702 | 8491 | 2.801421 | GAGCGAGCGATGGACTGA | 59.199 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
3703 | 8492 | 2.653448 | CGAGCGAGCGATGGACTG | 60.653 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3704 | 8493 | 4.560856 | GCGAGCGAGCGATGGACT | 62.561 | 66.667 | 1.41 | 0.00 | 0.00 | 3.85 |
3933 | 8723 | 1.735571 | CACGGTAAAAACTGGATCGGG | 59.264 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
3940 | 8730 | 8.642020 | GTTCATACTACTACACGGTAAAAACTG | 58.358 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3991 | 8948 | 1.538687 | GCCCTGCAGCCAGACAAAAT | 61.539 | 55.000 | 8.66 | 0.00 | 41.77 | 1.82 |
4122 | 9079 | 4.452733 | CGCCGGTCCAACCTCCTC | 62.453 | 72.222 | 1.90 | 0.00 | 35.66 | 3.71 |
4150 | 9107 | 2.306805 | AGAGTTGAACCATGCCATCTCA | 59.693 | 45.455 | 15.26 | 1.30 | 33.69 | 3.27 |
4160 | 9117 | 0.596600 | GCGTCGTCAGAGTTGAACCA | 60.597 | 55.000 | 0.00 | 0.00 | 34.49 | 3.67 |
4166 | 9123 | 1.148310 | CCATTTGCGTCGTCAGAGTT | 58.852 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4260 | 9217 | 2.172717 | CCAACCCCGAGGAAATCTATGT | 59.827 | 50.000 | 0.00 | 0.00 | 36.73 | 2.29 |
4279 | 9236 | 2.297315 | GTCTATCCATCATGTCGCTCCA | 59.703 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4394 | 9382 | 1.139853 | AGAGCCAACATAGCTAGTGCC | 59.860 | 52.381 | 0.00 | 0.00 | 41.75 | 5.01 |
4488 | 9476 | 3.670627 | GCGAACTGTGGATTGGTTGATTC | 60.671 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
4489 | 9477 | 2.228822 | GCGAACTGTGGATTGGTTGATT | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
4490 | 9478 | 1.812571 | GCGAACTGTGGATTGGTTGAT | 59.187 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4491 | 9479 | 1.234821 | GCGAACTGTGGATTGGTTGA | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4492 | 9480 | 0.110238 | CGCGAACTGTGGATTGGTTG | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4493 | 9481 | 2.244000 | CGCGAACTGTGGATTGGTT | 58.756 | 52.632 | 0.00 | 0.00 | 0.00 | 3.67 |
4494 | 9482 | 3.966215 | CGCGAACTGTGGATTGGT | 58.034 | 55.556 | 0.00 | 0.00 | 0.00 | 3.67 |
4501 | 9489 | 2.507110 | ATCCTCCACCGCGAACTGTG | 62.507 | 60.000 | 8.23 | 7.01 | 0.00 | 3.66 |
4502 | 9490 | 2.283529 | ATCCTCCACCGCGAACTGT | 61.284 | 57.895 | 8.23 | 0.00 | 0.00 | 3.55 |
4503 | 9491 | 1.811266 | CATCCTCCACCGCGAACTG | 60.811 | 63.158 | 8.23 | 0.00 | 0.00 | 3.16 |
4504 | 9492 | 2.579201 | CATCCTCCACCGCGAACT | 59.421 | 61.111 | 8.23 | 0.00 | 0.00 | 3.01 |
4505 | 9493 | 2.511600 | CCATCCTCCACCGCGAAC | 60.512 | 66.667 | 8.23 | 0.00 | 0.00 | 3.95 |
4506 | 9494 | 1.832719 | TTTCCATCCTCCACCGCGAA | 61.833 | 55.000 | 8.23 | 0.00 | 0.00 | 4.70 |
4507 | 9495 | 2.287274 | TTTCCATCCTCCACCGCGA | 61.287 | 57.895 | 8.23 | 0.00 | 0.00 | 5.87 |
4508 | 9496 | 2.106683 | GTTTCCATCCTCCACCGCG | 61.107 | 63.158 | 0.00 | 0.00 | 0.00 | 6.46 |
4509 | 9497 | 1.026718 | CAGTTTCCATCCTCCACCGC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4510 | 9498 | 1.026718 | GCAGTTTCCATCCTCCACCG | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4511 | 9499 | 0.329596 | AGCAGTTTCCATCCTCCACC | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4512 | 9500 | 1.003580 | TCAGCAGTTTCCATCCTCCAC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
4513 | 9501 | 1.361204 | TCAGCAGTTTCCATCCTCCA | 58.639 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4514 | 9502 | 2.290577 | ACTTCAGCAGTTTCCATCCTCC | 60.291 | 50.000 | 0.00 | 0.00 | 27.32 | 4.30 |
4515 | 9503 | 3.064900 | ACTTCAGCAGTTTCCATCCTC | 57.935 | 47.619 | 0.00 | 0.00 | 27.32 | 3.71 |
4516 | 9504 | 3.416156 | GAACTTCAGCAGTTTCCATCCT | 58.584 | 45.455 | 0.00 | 0.00 | 46.53 | 3.24 |
4517 | 9505 | 2.489722 | GGAACTTCAGCAGTTTCCATCC | 59.510 | 50.000 | 0.00 | 0.00 | 46.53 | 3.51 |
4518 | 9506 | 3.839051 | GGAACTTCAGCAGTTTCCATC | 57.161 | 47.619 | 0.00 | 0.00 | 46.53 | 3.51 |
4529 | 9517 | 0.036010 | ATCCGTGCTGGGAACTTCAG | 60.036 | 55.000 | 0.37 | 0.00 | 40.09 | 3.02 |
4530 | 9518 | 0.321564 | CATCCGTGCTGGGAACTTCA | 60.322 | 55.000 | 0.37 | 0.00 | 40.09 | 3.02 |
4531 | 9519 | 0.036388 | TCATCCGTGCTGGGAACTTC | 60.036 | 55.000 | 0.37 | 0.00 | 40.09 | 3.01 |
4532 | 9520 | 0.620556 | ATCATCCGTGCTGGGAACTT | 59.379 | 50.000 | 0.37 | 0.00 | 40.09 | 2.66 |
4533 | 9521 | 0.107508 | CATCATCCGTGCTGGGAACT | 60.108 | 55.000 | 0.37 | 0.00 | 40.09 | 3.01 |
4534 | 9522 | 1.097547 | CCATCATCCGTGCTGGGAAC | 61.098 | 60.000 | 0.37 | 0.00 | 40.09 | 3.62 |
4535 | 9523 | 1.224315 | CCATCATCCGTGCTGGGAA | 59.776 | 57.895 | 0.37 | 0.00 | 40.09 | 3.97 |
4536 | 9524 | 2.910360 | CCATCATCCGTGCTGGGA | 59.090 | 61.111 | 0.00 | 0.00 | 37.85 | 4.37 |
4537 | 9525 | 2.903855 | GCCATCATCCGTGCTGGG | 60.904 | 66.667 | 1.10 | 0.00 | 41.03 | 4.45 |
4538 | 9526 | 3.274586 | CGCCATCATCCGTGCTGG | 61.275 | 66.667 | 0.00 | 0.00 | 43.07 | 4.85 |
4539 | 9527 | 2.108514 | AACGCCATCATCCGTGCTG | 61.109 | 57.895 | 0.00 | 0.00 | 37.79 | 4.41 |
4540 | 9528 | 2.108514 | CAACGCCATCATCCGTGCT | 61.109 | 57.895 | 0.00 | 0.00 | 37.79 | 4.40 |
4541 | 9529 | 2.404789 | CAACGCCATCATCCGTGC | 59.595 | 61.111 | 0.00 | 0.00 | 37.79 | 5.34 |
4542 | 9530 | 2.404789 | GCAACGCCATCATCCGTG | 59.595 | 61.111 | 0.00 | 0.00 | 37.79 | 4.94 |
4554 | 9542 | 3.698463 | GTGTCGTGTCGGGCAACG | 61.698 | 66.667 | 0.00 | 0.00 | 46.11 | 4.10 |
4555 | 9543 | 3.698463 | CGTGTCGTGTCGGGCAAC | 61.698 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
4556 | 9544 | 4.210093 | ACGTGTCGTGTCGGGCAA | 62.210 | 61.111 | 0.00 | 0.00 | 39.18 | 4.52 |
4557 | 9545 | 4.634133 | GACGTGTCGTGTCGGGCA | 62.634 | 66.667 | 0.00 | 0.00 | 41.37 | 5.36 |
4558 | 9546 | 4.338539 | AGACGTGTCGTGTCGGGC | 62.339 | 66.667 | 0.00 | 0.00 | 41.37 | 6.13 |
4559 | 9547 | 2.126965 | GAGACGTGTCGTGTCGGG | 60.127 | 66.667 | 0.00 | 0.00 | 40.02 | 5.14 |
4565 | 9553 | 2.955402 | GCCAGAGAGACGTGTCGT | 59.045 | 61.111 | 7.10 | 0.00 | 45.10 | 4.34 |
4750 | 9738 | 3.281332 | GGCAATTACAAGCCCTCCA | 57.719 | 52.632 | 0.00 | 0.00 | 45.18 | 3.86 |
4762 | 9750 | 2.604382 | GTGGCACCAGGGGCAATT | 60.604 | 61.111 | 17.91 | 0.00 | 45.54 | 2.32 |
4884 | 9872 | 1.570857 | TAATCCCCCACCTGCCACAG | 61.571 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4891 | 9879 | 3.204382 | CACCAAGTATTAATCCCCCACCT | 59.796 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
4906 | 9894 | 0.482446 | TTGGGGCAATCTCACCAAGT | 59.518 | 50.000 | 0.00 | 0.00 | 38.02 | 3.16 |
5013 | 10025 | 1.002430 | TGCGAACCTCTGCATCTTCTT | 59.998 | 47.619 | 0.00 | 0.00 | 35.90 | 2.52 |
5109 | 10121 | 2.029666 | GCCTCCGCATACATCGCT | 59.970 | 61.111 | 0.00 | 0.00 | 34.03 | 4.93 |
5110 | 10122 | 3.406361 | CGCCTCCGCATACATCGC | 61.406 | 66.667 | 0.00 | 0.00 | 34.03 | 4.58 |
5111 | 10123 | 2.734723 | CCGCCTCCGCATACATCG | 60.735 | 66.667 | 0.00 | 0.00 | 34.03 | 3.84 |
5153 | 10165 | 3.219928 | GCGATCTCTCCTCCGCCA | 61.220 | 66.667 | 0.00 | 0.00 | 41.59 | 5.69 |
5199 | 10211 | 1.483595 | CCCACAGCAGAACCTCCAGA | 61.484 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5253 | 10265 | 2.116125 | GCCACCCACTTCCTTGCT | 59.884 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.