Multiple sequence alignment - TraesCS3A01G438800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G438800 chr3A 100.000 2878 0 0 1 2878 681730400 681733277 0.000000e+00 5315.0
1 TraesCS3A01G438800 chr3A 100.000 418 0 0 3212 3629 681733611 681734028 0.000000e+00 773.0
2 TraesCS3A01G438800 chr3A 92.593 378 27 1 3217 3593 681738986 681739363 3.190000e-150 542.0
3 TraesCS3A01G438800 chr3D 93.293 2147 120 12 408 2548 545180092 545182220 0.000000e+00 3145.0
4 TraesCS3A01G438800 chr3D 83.554 377 59 3 3219 3593 135049267 135049642 2.070000e-92 350.0
5 TraesCS3A01G438800 chr3D 95.122 41 2 0 2825 2865 68529998 68530038 8.410000e-07 65.8
6 TraesCS3A01G438800 chr3D 86.275 51 7 0 2828 2878 505054606 505054556 5.060000e-04 56.5
7 TraesCS3A01G438800 chr3D 87.755 49 2 2 520 568 545180164 545180208 2.000000e-03 54.7
8 TraesCS3A01G438800 chr3B 94.029 1390 74 9 1273 2659 721070479 721071862 0.000000e+00 2098.0
9 TraesCS3A01G438800 chr3B 81.260 619 53 20 70 642 721068158 721068759 3.330000e-120 442.0
10 TraesCS3A01G438800 chr3B 82.275 378 61 5 3218 3593 17764602 17764229 4.520000e-84 322.0
11 TraesCS3A01G438800 chr3B 83.077 390 18 23 642 995 721069826 721070203 9.780000e-81 311.0
12 TraesCS3A01G438800 chr3B 83.691 233 19 8 2651 2878 721071891 721072109 6.140000e-48 202.0
13 TraesCS3A01G438800 chr3B 87.755 49 2 2 520 568 721068584 721068628 2.000000e-03 54.7
14 TraesCS3A01G438800 chr2D 85.831 367 50 2 3228 3593 95182428 95182063 4.390000e-104 388.0
15 TraesCS3A01G438800 chr5A 83.947 380 54 6 3224 3598 275969713 275969336 1.240000e-94 357.0
16 TraesCS3A01G438800 chr5A 92.857 42 3 0 2824 2865 365962435 365962476 1.090000e-05 62.1
17 TraesCS3A01G438800 chr7B 83.204 387 59 6 3219 3601 52659861 52659477 2.070000e-92 350.0
18 TraesCS3A01G438800 chr7B 82.946 387 60 6 3219 3601 52681243 52680859 9.650000e-91 344.0
19 TraesCS3A01G438800 chr7B 93.617 47 3 0 3 49 679885528 679885574 1.810000e-08 71.3
20 TraesCS3A01G438800 chr7D 82.677 381 56 9 3219 3593 477657067 477656691 2.700000e-86 329.0
21 TraesCS3A01G438800 chr7D 88.136 59 7 0 2820 2878 4736977 4737035 1.810000e-08 71.3
22 TraesCS3A01G438800 chr5B 82.322 379 60 6 3219 3593 633254886 633254511 4.520000e-84 322.0
23 TraesCS3A01G438800 chr1A 79.447 253 38 9 1034 1274 363692935 363692685 2.240000e-37 167.0
24 TraesCS3A01G438800 chr7A 76.106 226 41 11 1055 1274 47553921 47554139 4.960000e-19 106.0
25 TraesCS3A01G438800 chr1B 89.873 79 6 2 2775 2852 619632027 619632104 2.310000e-17 100.0
26 TraesCS3A01G438800 chr6D 74.107 224 48 9 1054 1272 86658600 86658818 2.320000e-12 84.2
27 TraesCS3A01G438800 chr6D 93.617 47 3 0 2 48 411766028 411766074 1.810000e-08 71.3
28 TraesCS3A01G438800 chr6D 87.273 55 7 0 2819 2873 456505460 456505514 3.030000e-06 63.9
29 TraesCS3A01G438800 chr6D 89.362 47 5 0 2819 2865 451786410 451786456 3.910000e-05 60.2
30 TraesCS3A01G438800 chr4D 89.062 64 7 0 2815 2878 120077601 120077664 3.000000e-11 80.5
31 TraesCS3A01G438800 chr5D 79.245 106 21 1 2773 2878 469521117 469521221 5.030000e-09 73.1
32 TraesCS3A01G438800 chr1D 72.996 237 50 12 1053 1282 309452851 309452622 1.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G438800 chr3A 681730400 681734028 3628 False 3044.00 5315 100.0000 1 3629 2 chr3A.!!$F2 3628
1 TraesCS3A01G438800 chr3D 545180092 545182220 2128 False 1599.85 3145 90.5240 408 2548 2 chr3D.!!$F3 2140
2 TraesCS3A01G438800 chr3B 721068158 721072109 3951 False 621.54 2098 85.9624 70 2878 5 chr3B.!!$F1 2808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 532 0.026544 GACGACTCGATCCACGACTC 59.973 60.0 5.20 0.0 46.45 3.36 F
1104 2503 0.107410 TGTCAAGTTGTGTTCGCCCT 60.107 50.0 2.11 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 2842 0.108615 ATTTCAGCTCCAGGTCGTCG 60.109 55.0 0.00 0.0 0.00 5.12 R
2802 4248 0.234884 GTTCTGAACGGTTGCGGAAG 59.765 55.0 4.57 0.0 30.59 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.357018 GCGAATTTTAACCCCTCTTGAG 57.643 45.455 0.00 0.00 0.00 3.02
22 23 4.007659 GCGAATTTTAACCCCTCTTGAGA 58.992 43.478 0.00 0.00 0.00 3.27
23 24 4.095036 GCGAATTTTAACCCCTCTTGAGAG 59.905 45.833 0.93 0.93 41.71 3.20
31 32 4.606071 CTCTTGAGAGGCCAACGG 57.394 61.111 5.01 0.00 38.48 4.44
41 42 2.486966 GCCAACGGCTGAAGATGC 59.513 61.111 0.00 0.00 46.69 3.91
42 43 2.042831 GCCAACGGCTGAAGATGCT 61.043 57.895 0.00 0.00 46.69 3.79
43 44 1.986575 GCCAACGGCTGAAGATGCTC 61.987 60.000 0.00 0.00 46.69 4.26
44 45 0.392193 CCAACGGCTGAAGATGCTCT 60.392 55.000 0.00 0.00 0.00 4.09
45 46 1.446907 CAACGGCTGAAGATGCTCTT 58.553 50.000 0.00 0.00 39.87 2.85
46 47 2.621338 CAACGGCTGAAGATGCTCTTA 58.379 47.619 0.00 0.00 36.73 2.10
47 48 2.593346 ACGGCTGAAGATGCTCTTAG 57.407 50.000 0.00 0.77 36.73 2.18
48 49 1.137872 ACGGCTGAAGATGCTCTTAGG 59.862 52.381 0.00 0.00 36.73 2.69
49 50 1.410517 CGGCTGAAGATGCTCTTAGGA 59.589 52.381 0.00 0.00 36.73 2.94
50 51 2.159043 CGGCTGAAGATGCTCTTAGGAA 60.159 50.000 0.00 0.00 36.73 3.36
51 52 3.465871 GGCTGAAGATGCTCTTAGGAAG 58.534 50.000 0.00 0.00 36.73 3.46
52 53 3.133721 GGCTGAAGATGCTCTTAGGAAGA 59.866 47.826 0.00 0.00 36.73 2.87
53 54 4.119136 GCTGAAGATGCTCTTAGGAAGAC 58.881 47.826 0.00 0.00 36.73 3.01
54 55 4.358851 CTGAAGATGCTCTTAGGAAGACG 58.641 47.826 0.00 0.00 36.73 4.18
55 56 4.017126 TGAAGATGCTCTTAGGAAGACGA 58.983 43.478 0.00 0.00 36.73 4.20
56 57 4.097135 TGAAGATGCTCTTAGGAAGACGAG 59.903 45.833 0.00 0.00 36.73 4.18
57 58 2.955660 AGATGCTCTTAGGAAGACGAGG 59.044 50.000 0.00 0.00 33.12 4.63
58 59 2.509166 TGCTCTTAGGAAGACGAGGA 57.491 50.000 0.00 0.00 33.12 3.71
59 60 2.803956 TGCTCTTAGGAAGACGAGGAA 58.196 47.619 0.00 0.00 33.12 3.36
60 61 2.755655 TGCTCTTAGGAAGACGAGGAAG 59.244 50.000 0.00 0.00 33.12 3.46
61 62 2.480587 GCTCTTAGGAAGACGAGGAAGC 60.481 54.545 0.00 0.00 33.12 3.86
62 63 2.755655 CTCTTAGGAAGACGAGGAAGCA 59.244 50.000 0.00 0.00 33.12 3.91
63 64 3.366396 TCTTAGGAAGACGAGGAAGCAT 58.634 45.455 0.00 0.00 31.20 3.79
64 65 3.131223 TCTTAGGAAGACGAGGAAGCATG 59.869 47.826 0.00 0.00 31.20 4.06
65 66 0.539051 AGGAAGACGAGGAAGCATGG 59.461 55.000 0.00 0.00 0.00 3.66
66 67 0.462759 GGAAGACGAGGAAGCATGGG 60.463 60.000 0.00 0.00 0.00 4.00
67 68 0.250513 GAAGACGAGGAAGCATGGGT 59.749 55.000 0.00 0.00 0.00 4.51
68 69 0.250513 AAGACGAGGAAGCATGGGTC 59.749 55.000 0.00 0.00 0.00 4.46
83 84 0.790814 GGGTCTCGAAGAAACTTGCG 59.209 55.000 0.00 0.00 34.09 4.85
87 88 2.405690 GTCTCGAAGAAACTTGCGTCTC 59.594 50.000 0.00 0.00 34.09 3.36
89 90 4.330982 CTCGAAGAAACTTGCGTCTCGC 62.331 54.545 7.20 7.20 46.28 5.03
102 103 3.066369 CGTCTCGCTAGTTCATTGCTA 57.934 47.619 0.00 0.00 0.00 3.49
106 107 2.526077 TCGCTAGTTCATTGCTACACG 58.474 47.619 0.00 0.00 0.00 4.49
109 110 2.282820 GCTAGTTCATTGCTACACGCTC 59.717 50.000 0.00 0.00 40.11 5.03
125 130 0.389948 GCTCACACGACCCTAGGTTG 60.390 60.000 8.29 2.68 42.54 3.77
138 143 3.821033 CCCTAGGTTGTGGAAAACTTGAG 59.179 47.826 8.29 0.00 0.00 3.02
143 148 0.821711 TGTGGAAAACTTGAGGCGGG 60.822 55.000 0.00 0.00 0.00 6.13
145 150 0.821711 TGGAAAACTTGAGGCGGGTG 60.822 55.000 0.00 0.00 0.00 4.61
147 152 2.142357 GAAAACTTGAGGCGGGTGGC 62.142 60.000 0.00 0.00 42.51 5.01
183 188 2.037136 CGTTCCAAGGGCTGAGCTG 61.037 63.158 3.72 0.00 0.00 4.24
184 189 1.676967 GTTCCAAGGGCTGAGCTGG 60.677 63.158 3.72 4.42 0.00 4.85
197 202 3.411446 CTGAGCTGGTTTACAATGTGGA 58.589 45.455 0.00 0.00 0.00 4.02
198 203 3.820467 CTGAGCTGGTTTACAATGTGGAA 59.180 43.478 0.00 0.00 0.00 3.53
199 204 3.820467 TGAGCTGGTTTACAATGTGGAAG 59.180 43.478 0.00 0.00 0.00 3.46
200 205 3.157087 AGCTGGTTTACAATGTGGAAGG 58.843 45.455 0.00 0.00 0.00 3.46
201 206 2.890945 GCTGGTTTACAATGTGGAAGGT 59.109 45.455 0.00 0.00 0.00 3.50
202 207 3.305335 GCTGGTTTACAATGTGGAAGGTG 60.305 47.826 0.00 0.00 0.00 4.00
203 208 3.226777 TGGTTTACAATGTGGAAGGTGG 58.773 45.455 0.00 0.00 0.00 4.61
204 209 2.560981 GGTTTACAATGTGGAAGGTGGG 59.439 50.000 0.00 0.00 0.00 4.61
205 210 1.917872 TTACAATGTGGAAGGTGGGC 58.082 50.000 0.00 0.00 0.00 5.36
206 211 0.322098 TACAATGTGGAAGGTGGGCG 60.322 55.000 0.00 0.00 0.00 6.13
207 212 1.603455 CAATGTGGAAGGTGGGCGT 60.603 57.895 0.00 0.00 0.00 5.68
208 213 1.603455 AATGTGGAAGGTGGGCGTG 60.603 57.895 0.00 0.00 0.00 5.34
209 214 2.063015 AATGTGGAAGGTGGGCGTGA 62.063 55.000 0.00 0.00 0.00 4.35
219 224 2.434359 GGGCGTGAAAGGAGACGG 60.434 66.667 0.00 0.00 36.09 4.79
231 236 3.282745 GAGACGGAGAAGGCACGCA 62.283 63.158 0.00 0.00 0.00 5.24
246 251 1.296755 ACGCAGAGCAAGCAGTGATG 61.297 55.000 0.00 0.00 0.00 3.07
266 271 1.002250 GTGGCGTGTGACTAGTGACG 61.002 60.000 8.00 10.46 34.93 4.35
278 284 4.092237 TGACTAGTGACGTTTTTGTGTGTG 59.908 41.667 0.00 0.00 0.00 3.82
287 293 3.127203 CGTTTTTGTGTGTGTGGAACCTA 59.873 43.478 0.00 0.00 34.36 3.08
289 295 3.351794 TTTGTGTGTGTGGAACCTACA 57.648 42.857 0.00 0.00 34.36 2.74
299 305 5.761234 TGTGTGGAACCTACATCTTGTTAAC 59.239 40.000 0.00 0.00 34.36 2.01
303 309 6.433093 GTGGAACCTACATCTTGTTAACCATT 59.567 38.462 2.48 0.00 0.00 3.16
305 311 6.657541 GGAACCTACATCTTGTTAACCATTGA 59.342 38.462 2.48 0.00 0.00 2.57
307 313 8.650143 AACCTACATCTTGTTAACCATTGATT 57.350 30.769 2.48 0.00 0.00 2.57
308 314 8.055279 ACCTACATCTTGTTAACCATTGATTG 57.945 34.615 2.48 0.00 0.00 2.67
309 315 6.974622 CCTACATCTTGTTAACCATTGATTGC 59.025 38.462 2.48 0.00 0.00 3.56
310 316 6.594788 ACATCTTGTTAACCATTGATTGCT 57.405 33.333 2.48 0.00 0.00 3.91
314 320 7.144722 TCTTGTTAACCATTGATTGCTACTG 57.855 36.000 2.48 0.00 0.00 2.74
315 321 6.714810 TCTTGTTAACCATTGATTGCTACTGT 59.285 34.615 2.48 0.00 0.00 3.55
316 322 7.880713 TCTTGTTAACCATTGATTGCTACTGTA 59.119 33.333 2.48 0.00 0.00 2.74
317 323 7.372451 TGTTAACCATTGATTGCTACTGTAC 57.628 36.000 2.48 0.00 0.00 2.90
318 324 6.937465 TGTTAACCATTGATTGCTACTGTACA 59.063 34.615 2.48 0.00 0.00 2.90
319 325 5.880054 AACCATTGATTGCTACTGTACAC 57.120 39.130 0.00 0.00 0.00 2.90
351 359 1.582502 GAAAACTCGACGCGGATACTG 59.417 52.381 12.47 0.00 0.00 2.74
362 370 0.317103 CGGATACTGCGAGACTTCCG 60.317 60.000 0.00 0.00 39.98 4.30
386 394 2.878406 GGCTGAGCTGTTTTACACTTGA 59.122 45.455 3.72 0.00 0.00 3.02
387 395 3.058639 GGCTGAGCTGTTTTACACTTGAG 60.059 47.826 3.72 0.00 0.00 3.02
406 436 2.545946 GAGAGTTCAGTTCACAAGTGGC 59.454 50.000 0.00 0.00 32.61 5.01
411 441 0.309922 CAGTTCACAAGTGGCTGCTG 59.690 55.000 0.00 0.00 31.53 4.41
419 449 0.671781 AAGTGGCTGCTGTCATCGAC 60.672 55.000 0.00 0.00 0.00 4.20
502 532 0.026544 GACGACTCGATCCACGACTC 59.973 60.000 5.20 0.00 46.45 3.36
505 535 2.024871 CTCGATCCACGACTCGCC 59.975 66.667 0.00 0.00 46.45 5.54
507 537 3.518998 CGATCCACGACTCGCCCT 61.519 66.667 0.00 0.00 45.77 5.19
680 1790 4.938226 ACTTTGGATTGCTACTGCTCTTAC 59.062 41.667 0.00 0.00 40.48 2.34
759 1870 2.158475 GGATTATTGTCCCCAGGCATCA 60.158 50.000 0.00 0.00 31.82 3.07
776 1915 2.851263 TCACCACACTACAACCCATC 57.149 50.000 0.00 0.00 0.00 3.51
807 1946 0.179124 CCACTCGGTTAGCAGCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
817 1956 1.113788 AGCAGCTCTCTCTCATCCAC 58.886 55.000 0.00 0.00 0.00 4.02
830 1969 1.075450 ATCCACCCCGTACTCCTCC 60.075 63.158 0.00 0.00 0.00 4.30
844 1983 1.815421 CCTCCGCCCATCTCGTTTG 60.815 63.158 0.00 0.00 0.00 2.93
892 2031 3.726607 GCTAGGACAAGGTGATCATCTG 58.273 50.000 9.83 6.57 0.00 2.90
941 2087 3.494045 TGCGGATATGCGATTCTCTAG 57.506 47.619 21.62 0.00 37.81 2.43
985 2131 4.914504 CGATCTATACATCCTATCATGCGC 59.085 45.833 0.00 0.00 0.00 6.09
991 2137 1.925185 CATCCTATCATGCGCTCATCG 59.075 52.381 9.73 0.00 42.12 3.84
1006 2405 2.661675 CTCATCGGTAACAGTCAACACG 59.338 50.000 0.00 0.00 0.00 4.49
1028 2427 3.276857 CATCTCACTCATGTTCCTTGGG 58.723 50.000 0.00 0.00 0.00 4.12
1048 2447 1.067495 GCCTGGATATCTAGCGGACAC 60.067 57.143 10.49 0.00 0.00 3.67
1071 2470 4.812626 CCAAATTTTTAGGCATGGCAGATC 59.187 41.667 22.64 0.00 0.00 2.75
1076 2475 0.249447 TAGGCATGGCAGATCGAACG 60.249 55.000 22.64 0.00 0.00 3.95
1103 2502 0.951558 ATGTCAAGTTGTGTTCGCCC 59.048 50.000 2.11 0.00 0.00 6.13
1104 2503 0.107410 TGTCAAGTTGTGTTCGCCCT 60.107 50.000 2.11 0.00 0.00 5.19
1108 2507 0.818040 AAGTTGTGTTCGCCCTGGAC 60.818 55.000 0.00 0.00 0.00 4.02
1115 2514 2.504274 TTCGCCCTGGACGTCAAGT 61.504 57.895 18.62 0.00 0.00 3.16
1116 2515 2.030562 CGCCCTGGACGTCAAGTT 59.969 61.111 18.62 0.00 0.00 2.66
1123 2522 3.493699 CCCTGGACGTCAAGTTTAGTTGA 60.494 47.826 18.62 0.00 33.95 3.18
1132 2531 3.745975 TCAAGTTTAGTTGACGAGCATGG 59.254 43.478 0.00 0.00 31.31 3.66
1139 2538 0.810648 TTGACGAGCATGGCAAATCC 59.189 50.000 0.00 0.00 0.00 3.01
1152 2551 2.356135 GCAAATCCGCCTCAACTCTTA 58.644 47.619 0.00 0.00 0.00 2.10
1156 2555 2.981859 TCCGCCTCAACTCTTATTCC 57.018 50.000 0.00 0.00 0.00 3.01
1168 2567 5.819825 ACTCTTATTCCGCCAGAAAAATC 57.180 39.130 0.00 0.00 38.21 2.17
1178 2577 1.330306 CAGAAAAATCGCCGTGCTTG 58.670 50.000 0.00 0.00 0.00 4.01
1226 2628 5.455525 GCCAATATAAAGCATGAACAACGTC 59.544 40.000 0.00 0.00 0.00 4.34
1249 2652 4.348656 CGATTGCCATGTCTGAAAATCTG 58.651 43.478 0.00 0.00 0.00 2.90
1252 2655 2.743664 TGCCATGTCTGAAAATCTGACG 59.256 45.455 11.21 0.00 44.91 4.35
1265 2668 4.859629 AATCTGACGTCGGATTTTTAGC 57.140 40.909 36.06 1.27 46.67 3.09
1313 2716 2.028420 TGATGACAATGGCGGAGAAG 57.972 50.000 0.00 0.00 0.00 2.85
1471 2874 3.594134 AGCTGAAATTTGAGAGGACGAG 58.406 45.455 9.00 0.00 0.00 4.18
1526 2929 3.868077 GTCGAAGGATGGAGATCAAACAG 59.132 47.826 0.00 0.00 0.00 3.16
1650 3053 3.249559 CACAGAAAAGAACCTGCTGAGAC 59.750 47.826 0.00 0.00 33.90 3.36
1764 3167 1.403814 TTATCTCAGCCCTCTGGTCG 58.596 55.000 0.00 0.00 40.69 4.79
1796 3199 4.840005 GGCAGGGCGCTCTGGTAC 62.840 72.222 36.75 21.07 41.91 3.34
1890 3293 2.030007 GCAATGCTAGGCTTCAAACACA 60.030 45.455 0.00 0.00 0.00 3.72
1901 3304 4.202151 GGCTTCAAACACAAAGACCTCAAT 60.202 41.667 0.00 0.00 0.00 2.57
1971 3374 2.951642 AGCACGGACATTATTGGGATTG 59.048 45.455 0.00 0.00 0.00 2.67
1973 3376 2.951642 CACGGACATTATTGGGATTGCT 59.048 45.455 0.00 0.00 0.00 3.91
1974 3377 4.133820 CACGGACATTATTGGGATTGCTA 58.866 43.478 0.00 0.00 0.00 3.49
1975 3378 4.578516 CACGGACATTATTGGGATTGCTAA 59.421 41.667 0.00 0.00 0.00 3.09
2114 3517 2.616634 ATGCAGATGTTGATCTCGCT 57.383 45.000 0.00 0.00 36.75 4.93
2115 3518 1.648504 TGCAGATGTTGATCTCGCTG 58.351 50.000 0.00 0.00 36.75 5.18
2130 3533 1.134699 TCGCTGAGTTGGGCAGAATAG 60.135 52.381 0.00 0.00 35.39 1.73
2167 3570 1.471684 CTGCTGCAAAGAAGATGGGAC 59.528 52.381 3.02 0.00 0.00 4.46
2263 3667 2.355010 ACTGCCATATTTCAGCTCCC 57.645 50.000 0.00 0.00 33.80 4.30
2354 3758 2.753966 CCCCATTGCTCGAACGCAG 61.754 63.158 0.00 0.00 41.55 5.18
2355 3759 2.099062 CCATTGCTCGAACGCAGC 59.901 61.111 0.00 10.07 41.55 5.25
2359 3763 4.742201 TGCTCGAACGCAGCCCTC 62.742 66.667 12.85 0.00 35.89 4.30
2401 3805 1.398390 GCAGAGGAGGCAATACAAACG 59.602 52.381 0.00 0.00 0.00 3.60
2486 3890 5.468592 CACATGGTTGTGCAAGCTTTATAA 58.531 37.500 14.03 0.00 46.20 0.98
2515 3919 0.042188 CTGTCGTTGAAACCAGCACG 60.042 55.000 0.00 0.00 0.00 5.34
2629 4034 6.827641 TGAGAATAAGATGTTGTGTTTACGC 58.172 36.000 0.00 0.00 0.00 4.42
2637 4042 7.435068 AGATGTTGTGTTTACGCTAAAATCT 57.565 32.000 0.00 0.00 0.00 2.40
2639 4044 5.672051 TGTTGTGTTTACGCTAAAATCTCG 58.328 37.500 0.00 0.00 0.00 4.04
2679 4120 4.232221 GTTGTTTGTCAATGCTCATGGAG 58.768 43.478 0.00 0.00 38.38 3.86
2764 4210 9.958234 TTTGATCAGAAACGAAAATTCATAACA 57.042 25.926 0.00 0.00 0.00 2.41
2773 4219 9.751542 AAACGAAAATTCATAACAACCACATTA 57.248 25.926 0.00 0.00 0.00 1.90
2780 4226 5.080337 TCATAACAACCACATTAAGGGCAA 58.920 37.500 0.00 0.00 0.00 4.52
2784 4230 2.215942 ACCACATTAAGGGCAACTCC 57.784 50.000 0.00 0.00 0.00 3.85
2787 4233 2.493278 CCACATTAAGGGCAACTCCAAG 59.507 50.000 0.00 0.00 36.21 3.61
2790 4236 0.480690 TTAAGGGCAACTCCAAGGCA 59.519 50.000 0.00 0.00 36.21 4.75
2794 4240 1.073897 GGCAACTCCAAGGCAGACT 59.926 57.895 0.00 0.00 34.01 3.24
2796 4242 0.250467 GCAACTCCAAGGCAGACTCA 60.250 55.000 0.00 0.00 0.00 3.41
2800 4246 4.326826 CAACTCCAAGGCAGACTCATAAA 58.673 43.478 0.00 0.00 0.00 1.40
2801 4247 3.944087 ACTCCAAGGCAGACTCATAAAC 58.056 45.455 0.00 0.00 0.00 2.01
2802 4248 3.274288 CTCCAAGGCAGACTCATAAACC 58.726 50.000 0.00 0.00 0.00 3.27
2803 4249 2.912956 TCCAAGGCAGACTCATAAACCT 59.087 45.455 0.00 0.00 0.00 3.50
2804 4250 3.330701 TCCAAGGCAGACTCATAAACCTT 59.669 43.478 0.00 0.00 38.01 3.50
2805 4251 3.691609 CCAAGGCAGACTCATAAACCTTC 59.308 47.826 0.00 0.00 35.36 3.46
2806 4252 3.636153 AGGCAGACTCATAAACCTTCC 57.364 47.619 0.00 0.00 0.00 3.46
2807 4253 2.093447 AGGCAGACTCATAAACCTTCCG 60.093 50.000 0.00 0.00 0.00 4.30
2808 4254 1.666189 GCAGACTCATAAACCTTCCGC 59.334 52.381 0.00 0.00 0.00 5.54
2809 4255 2.935238 GCAGACTCATAAACCTTCCGCA 60.935 50.000 0.00 0.00 0.00 5.69
2810 4256 3.334691 CAGACTCATAAACCTTCCGCAA 58.665 45.455 0.00 0.00 0.00 4.85
2811 4257 3.125316 CAGACTCATAAACCTTCCGCAAC 59.875 47.826 0.00 0.00 0.00 4.17
2820 4266 0.882927 CCTTCCGCAACCGTTCAGAA 60.883 55.000 0.00 0.00 0.00 3.02
2844 4290 1.648467 GAAGCCATCCAACGCTGACC 61.648 60.000 0.00 0.00 34.94 4.02
2853 4299 0.108804 CAACGCTGACCTGTATCGGT 60.109 55.000 0.00 0.00 40.80 4.69
2870 4316 1.136147 GTCTACGAAGCGGCTCGAA 59.864 57.895 22.23 9.25 41.44 3.71
2871 4317 1.132780 GTCTACGAAGCGGCTCGAAC 61.133 60.000 22.23 14.85 41.44 3.95
2872 4318 2.202388 TACGAAGCGGCTCGAACG 60.202 61.111 22.23 17.96 41.44 3.95
2873 4319 2.845861 CTACGAAGCGGCTCGAACGT 62.846 60.000 22.23 21.42 41.44 3.99
2874 4320 3.827784 CGAAGCGGCTCGAACGTG 61.828 66.667 1.45 0.00 41.44 4.49
2875 4321 2.430244 GAAGCGGCTCGAACGTGA 60.430 61.111 1.45 0.00 0.00 4.35
2877 4323 1.352156 GAAGCGGCTCGAACGTGATT 61.352 55.000 1.45 4.28 0.00 2.57
3228 4674 3.850508 AAAAACACCTCCCCGTGC 58.149 55.556 0.00 0.00 37.25 5.34
3229 4675 2.190841 AAAAACACCTCCCCGTGCG 61.191 57.895 0.00 0.00 37.25 5.34
3257 4703 3.102097 GCGCTAGCTTTCCGCATT 58.898 55.556 13.93 0.00 46.32 3.56
3258 4704 1.010685 GCGCTAGCTTTCCGCATTC 60.011 57.895 13.93 0.00 46.32 2.67
3259 4705 1.705337 GCGCTAGCTTTCCGCATTCA 61.705 55.000 13.93 0.00 46.32 2.57
3260 4706 0.940126 CGCTAGCTTTCCGCATTCAT 59.060 50.000 13.93 0.00 42.61 2.57
3261 4707 1.333524 CGCTAGCTTTCCGCATTCATG 60.334 52.381 13.93 0.00 42.61 3.07
3273 4719 0.585357 CATTCATGCCGCTGTAGAGC 59.415 55.000 0.76 0.76 42.37 4.09
3295 4741 3.719083 CGAAGCTCAACACTGAAGATG 57.281 47.619 0.00 0.00 0.00 2.90
3296 4742 2.414481 CGAAGCTCAACACTGAAGATGG 59.586 50.000 0.00 0.00 0.00 3.51
3297 4743 1.818642 AGCTCAACACTGAAGATGGC 58.181 50.000 0.00 0.00 0.00 4.40
3298 4744 1.350351 AGCTCAACACTGAAGATGGCT 59.650 47.619 0.00 0.00 0.00 4.75
3299 4745 2.157738 GCTCAACACTGAAGATGGCTT 58.842 47.619 0.00 0.00 36.96 4.35
3300 4746 3.008375 AGCTCAACACTGAAGATGGCTTA 59.992 43.478 0.00 0.00 33.61 3.09
3301 4747 3.373439 GCTCAACACTGAAGATGGCTTAG 59.627 47.826 0.00 0.00 33.61 2.18
3302 4748 4.825422 CTCAACACTGAAGATGGCTTAGA 58.175 43.478 0.00 0.00 33.61 2.10
3303 4749 4.825422 TCAACACTGAAGATGGCTTAGAG 58.175 43.478 0.00 0.00 33.61 2.43
3304 4750 4.528206 TCAACACTGAAGATGGCTTAGAGA 59.472 41.667 0.00 0.00 33.61 3.10
3305 4751 4.734398 ACACTGAAGATGGCTTAGAGAG 57.266 45.455 0.00 0.00 33.61 3.20
3306 4752 3.450457 ACACTGAAGATGGCTTAGAGAGG 59.550 47.826 0.00 0.00 33.61 3.69
3307 4753 3.703556 CACTGAAGATGGCTTAGAGAGGA 59.296 47.826 0.00 0.00 33.61 3.71
3308 4754 3.704061 ACTGAAGATGGCTTAGAGAGGAC 59.296 47.826 0.00 0.00 33.61 3.85
3309 4755 2.690497 TGAAGATGGCTTAGAGAGGACG 59.310 50.000 0.00 0.00 33.61 4.79
3310 4756 2.445682 AGATGGCTTAGAGAGGACGT 57.554 50.000 0.00 0.00 0.00 4.34
3311 4757 2.028130 AGATGGCTTAGAGAGGACGTG 58.972 52.381 0.00 0.00 0.00 4.49
3312 4758 2.025155 GATGGCTTAGAGAGGACGTGA 58.975 52.381 0.00 0.00 0.00 4.35
3313 4759 1.174783 TGGCTTAGAGAGGACGTGAC 58.825 55.000 0.00 0.00 0.00 3.67
3314 4760 0.456628 GGCTTAGAGAGGACGTGACC 59.543 60.000 0.00 0.00 0.00 4.02
3315 4761 0.456628 GCTTAGAGAGGACGTGACCC 59.543 60.000 0.00 0.00 0.00 4.46
3316 4762 1.104630 CTTAGAGAGGACGTGACCCC 58.895 60.000 0.00 0.00 0.00 4.95
3317 4763 0.702902 TTAGAGAGGACGTGACCCCT 59.297 55.000 0.00 0.00 35.02 4.79
3320 4766 2.971452 GAGGACGTGACCCCTCAC 59.029 66.667 14.45 0.00 46.28 3.51
3321 4767 1.906824 GAGGACGTGACCCCTCACA 60.907 63.158 14.45 0.00 46.47 3.58
3322 4768 1.878656 GAGGACGTGACCCCTCACAG 61.879 65.000 14.45 0.00 46.47 3.66
3323 4769 2.048127 GACGTGACCCCTCACAGC 60.048 66.667 0.00 0.00 46.47 4.40
3324 4770 3.591254 GACGTGACCCCTCACAGCC 62.591 68.421 0.00 0.00 46.47 4.85
3325 4771 3.314331 CGTGACCCCTCACAGCCT 61.314 66.667 2.02 0.00 46.47 4.58
3326 4772 2.665603 GTGACCCCTCACAGCCTC 59.334 66.667 0.00 0.00 45.57 4.70
3327 4773 2.607750 TGACCCCTCACAGCCTCC 60.608 66.667 0.00 0.00 0.00 4.30
3328 4774 3.775654 GACCCCTCACAGCCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
3332 4778 3.790437 CCTCACAGCCTCCGCCAT 61.790 66.667 0.00 0.00 34.57 4.40
3333 4779 2.270205 CTCACAGCCTCCGCCATT 59.730 61.111 0.00 0.00 34.57 3.16
3334 4780 1.522092 CTCACAGCCTCCGCCATTA 59.478 57.895 0.00 0.00 34.57 1.90
3335 4781 0.107703 CTCACAGCCTCCGCCATTAA 60.108 55.000 0.00 0.00 34.57 1.40
3336 4782 0.326595 TCACAGCCTCCGCCATTAAA 59.673 50.000 0.00 0.00 34.57 1.52
3337 4783 0.734889 CACAGCCTCCGCCATTAAAG 59.265 55.000 0.00 0.00 34.57 1.85
3338 4784 1.032114 ACAGCCTCCGCCATTAAAGC 61.032 55.000 0.00 0.00 34.57 3.51
3373 4819 4.640855 CGCCACCACGACACGTCT 62.641 66.667 0.00 0.00 38.32 4.18
3374 4820 2.733593 GCCACCACGACACGTCTC 60.734 66.667 0.00 0.00 38.32 3.36
3375 4821 2.049433 CCACCACGACACGTCTCC 60.049 66.667 0.00 0.00 38.32 3.71
3376 4822 2.428569 CACCACGACACGTCTCCG 60.429 66.667 0.00 0.00 38.32 4.63
3377 4823 3.667282 ACCACGACACGTCTCCGG 61.667 66.667 0.00 0.00 38.32 5.14
3378 4824 3.667282 CCACGACACGTCTCCGGT 61.667 66.667 0.00 0.00 38.32 5.28
3379 4825 2.428569 CACGACACGTCTCCGGTG 60.429 66.667 0.00 0.00 38.32 4.94
3380 4826 2.903855 ACGACACGTCTCCGGTGT 60.904 61.111 0.00 0.00 33.69 4.16
3381 4827 2.126965 CGACACGTCTCCGGTGTC 60.127 66.667 13.50 13.50 39.52 3.67
3382 4828 2.257676 GACACGTCTCCGGTGTCC 59.742 66.667 12.70 0.00 38.26 4.02
3394 4840 4.134623 GTGTCCGCACCTGTTCAA 57.865 55.556 0.00 0.00 39.61 2.69
3395 4841 1.647084 GTGTCCGCACCTGTTCAAC 59.353 57.895 0.00 0.00 39.61 3.18
3396 4842 1.885388 TGTCCGCACCTGTTCAACG 60.885 57.895 0.00 0.00 0.00 4.10
3397 4843 1.885850 GTCCGCACCTGTTCAACGT 60.886 57.895 0.00 0.00 0.00 3.99
3398 4844 1.593209 TCCGCACCTGTTCAACGTC 60.593 57.895 0.00 0.00 0.00 4.34
3399 4845 2.544359 CGCACCTGTTCAACGTCG 59.456 61.111 0.00 0.00 0.00 5.12
3400 4846 2.935955 GCACCTGTTCAACGTCGG 59.064 61.111 0.00 0.00 0.00 4.79
3401 4847 1.593209 GCACCTGTTCAACGTCGGA 60.593 57.895 0.00 0.00 0.00 4.55
3402 4848 1.557443 GCACCTGTTCAACGTCGGAG 61.557 60.000 0.00 0.00 0.00 4.63
3403 4849 0.031585 CACCTGTTCAACGTCGGAGA 59.968 55.000 0.00 0.00 0.00 3.71
3404 4850 0.966920 ACCTGTTCAACGTCGGAGAT 59.033 50.000 0.00 0.00 40.67 2.75
3413 4859 3.021541 CGTCGGAGATGTGTGACTG 57.978 57.895 0.00 0.00 40.67 3.51
3414 4860 0.456824 CGTCGGAGATGTGTGACTGG 60.457 60.000 0.00 0.00 40.67 4.00
3415 4861 0.888619 GTCGGAGATGTGTGACTGGA 59.111 55.000 0.00 0.00 40.67 3.86
3416 4862 0.888619 TCGGAGATGTGTGACTGGAC 59.111 55.000 0.00 0.00 0.00 4.02
3417 4863 0.456824 CGGAGATGTGTGACTGGACG 60.457 60.000 0.00 0.00 0.00 4.79
3418 4864 0.108615 GGAGATGTGTGACTGGACGG 60.109 60.000 0.00 0.00 0.00 4.79
3419 4865 0.108615 GAGATGTGTGACTGGACGGG 60.109 60.000 0.00 0.00 0.00 5.28
3420 4866 0.541998 AGATGTGTGACTGGACGGGA 60.542 55.000 0.00 0.00 0.00 5.14
3421 4867 0.320374 GATGTGTGACTGGACGGGAA 59.680 55.000 0.00 0.00 0.00 3.97
3422 4868 0.321671 ATGTGTGACTGGACGGGAAG 59.678 55.000 0.00 0.00 0.00 3.46
3423 4869 1.004918 GTGTGACTGGACGGGAAGG 60.005 63.158 0.00 0.00 0.00 3.46
3424 4870 2.214216 TGTGACTGGACGGGAAGGG 61.214 63.158 0.00 0.00 0.00 3.95
3425 4871 1.911766 GTGACTGGACGGGAAGGGA 60.912 63.158 0.00 0.00 0.00 4.20
3426 4872 1.911766 TGACTGGACGGGAAGGGAC 60.912 63.158 0.00 0.00 0.00 4.46
3427 4873 1.911766 GACTGGACGGGAAGGGACA 60.912 63.158 0.00 0.00 0.00 4.02
3428 4874 2.168666 GACTGGACGGGAAGGGACAC 62.169 65.000 0.00 0.00 0.00 3.67
3429 4875 2.122769 TGGACGGGAAGGGACACA 60.123 61.111 0.00 0.00 0.00 3.72
3430 4876 1.537889 TGGACGGGAAGGGACACAT 60.538 57.895 0.00 0.00 0.00 3.21
3431 4877 0.252330 TGGACGGGAAGGGACACATA 60.252 55.000 0.00 0.00 0.00 2.29
3432 4878 1.129058 GGACGGGAAGGGACACATAT 58.871 55.000 0.00 0.00 0.00 1.78
3433 4879 1.070289 GGACGGGAAGGGACACATATC 59.930 57.143 0.00 0.00 0.00 1.63
3434 4880 2.040178 GACGGGAAGGGACACATATCT 58.960 52.381 0.00 0.00 0.00 1.98
3435 4881 3.228453 GACGGGAAGGGACACATATCTA 58.772 50.000 0.00 0.00 0.00 1.98
3436 4882 2.963782 ACGGGAAGGGACACATATCTAC 59.036 50.000 0.00 0.00 0.00 2.59
3437 4883 2.299297 CGGGAAGGGACACATATCTACC 59.701 54.545 0.00 0.00 0.00 3.18
3438 4884 2.299297 GGGAAGGGACACATATCTACCG 59.701 54.545 0.00 0.00 0.00 4.02
3439 4885 2.288886 GGAAGGGACACATATCTACCGC 60.289 54.545 0.00 0.00 0.00 5.68
3440 4886 0.959553 AGGGACACATATCTACCGCG 59.040 55.000 0.00 0.00 0.00 6.46
3441 4887 0.666577 GGGACACATATCTACCGCGC 60.667 60.000 0.00 0.00 0.00 6.86
3442 4888 0.666577 GGACACATATCTACCGCGCC 60.667 60.000 0.00 0.00 0.00 6.53
3443 4889 0.666577 GACACATATCTACCGCGCCC 60.667 60.000 0.00 0.00 0.00 6.13
3444 4890 1.733041 CACATATCTACCGCGCCCG 60.733 63.158 0.00 0.00 0.00 6.13
3445 4891 2.198287 ACATATCTACCGCGCCCGT 61.198 57.895 0.00 0.00 0.00 5.28
3446 4892 1.006571 CATATCTACCGCGCCCGTT 60.007 57.895 0.00 0.00 0.00 4.44
3447 4893 1.007336 CATATCTACCGCGCCCGTTC 61.007 60.000 0.00 0.00 0.00 3.95
3448 4894 1.457823 ATATCTACCGCGCCCGTTCA 61.458 55.000 0.00 0.00 0.00 3.18
3449 4895 1.665264 TATCTACCGCGCCCGTTCAA 61.665 55.000 0.00 0.00 0.00 2.69
3450 4896 2.306255 ATCTACCGCGCCCGTTCAAT 62.306 55.000 0.00 0.00 0.00 2.57
3451 4897 2.808958 CTACCGCGCCCGTTCAATG 61.809 63.158 0.00 0.00 0.00 2.82
3452 4898 3.592856 TACCGCGCCCGTTCAATGT 62.593 57.895 0.00 0.00 0.00 2.71
3453 4899 4.160635 CCGCGCCCGTTCAATGTC 62.161 66.667 0.00 0.00 0.00 3.06
3454 4900 4.499023 CGCGCCCGTTCAATGTCG 62.499 66.667 0.00 0.00 0.00 4.35
3455 4901 3.419759 GCGCCCGTTCAATGTCGT 61.420 61.111 0.00 0.00 0.00 4.34
3456 4902 2.961669 GCGCCCGTTCAATGTCGTT 61.962 57.895 0.00 0.00 0.00 3.85
3457 4903 1.154488 CGCCCGTTCAATGTCGTTG 60.154 57.895 0.00 0.00 39.25 4.10
3458 4904 1.837538 CGCCCGTTCAATGTCGTTGT 61.838 55.000 4.72 0.00 38.95 3.32
3459 4905 0.110373 GCCCGTTCAATGTCGTTGTC 60.110 55.000 4.72 0.00 38.95 3.18
3460 4906 0.515564 CCCGTTCAATGTCGTTGTCC 59.484 55.000 4.72 0.00 38.95 4.02
3461 4907 1.222300 CCGTTCAATGTCGTTGTCCA 58.778 50.000 4.72 0.00 38.95 4.02
3462 4908 1.804151 CCGTTCAATGTCGTTGTCCAT 59.196 47.619 4.72 0.00 38.95 3.41
3463 4909 2.159707 CCGTTCAATGTCGTTGTCCATC 60.160 50.000 4.72 0.00 38.95 3.51
3464 4910 2.159707 CGTTCAATGTCGTTGTCCATCC 60.160 50.000 4.72 0.00 38.95 3.51
3465 4911 1.720805 TCAATGTCGTTGTCCATCCG 58.279 50.000 4.72 0.00 38.95 4.18
3466 4912 1.001520 TCAATGTCGTTGTCCATCCGT 59.998 47.619 4.72 0.00 38.95 4.69
3467 4913 1.393539 CAATGTCGTTGTCCATCCGTC 59.606 52.381 0.00 0.00 33.01 4.79
3468 4914 0.895530 ATGTCGTTGTCCATCCGTCT 59.104 50.000 0.00 0.00 0.00 4.18
3469 4915 0.038618 TGTCGTTGTCCATCCGTCTG 60.039 55.000 0.00 0.00 0.00 3.51
3470 4916 1.080093 TCGTTGTCCATCCGTCTGC 60.080 57.895 0.00 0.00 0.00 4.26
3471 4917 1.374125 CGTTGTCCATCCGTCTGCA 60.374 57.895 0.00 0.00 0.00 4.41
3472 4918 1.354337 CGTTGTCCATCCGTCTGCAG 61.354 60.000 7.63 7.63 0.00 4.41
3473 4919 1.375908 TTGTCCATCCGTCTGCAGC 60.376 57.895 9.47 3.23 0.00 5.25
3474 4920 2.512515 GTCCATCCGTCTGCAGCC 60.513 66.667 9.47 0.00 0.00 4.85
3475 4921 3.785859 TCCATCCGTCTGCAGCCC 61.786 66.667 9.47 0.46 0.00 5.19
3476 4922 4.864334 CCATCCGTCTGCAGCCCC 62.864 72.222 9.47 0.00 0.00 5.80
3477 4923 3.790437 CATCCGTCTGCAGCCCCT 61.790 66.667 9.47 0.00 0.00 4.79
3478 4924 3.011517 ATCCGTCTGCAGCCCCTT 61.012 61.111 9.47 0.00 0.00 3.95
3479 4925 1.689233 ATCCGTCTGCAGCCCCTTA 60.689 57.895 9.47 0.00 0.00 2.69
3480 4926 1.271840 ATCCGTCTGCAGCCCCTTAA 61.272 55.000 9.47 0.00 0.00 1.85
3481 4927 1.450312 CCGTCTGCAGCCCCTTAAG 60.450 63.158 9.47 0.00 0.00 1.85
3482 4928 2.109126 CGTCTGCAGCCCCTTAAGC 61.109 63.158 9.47 0.00 0.00 3.09
3483 4929 1.002134 GTCTGCAGCCCCTTAAGCA 60.002 57.895 9.47 0.00 35.43 3.91
3484 4930 0.609131 GTCTGCAGCCCCTTAAGCAA 60.609 55.000 9.47 0.00 36.44 3.91
3485 4931 0.322816 TCTGCAGCCCCTTAAGCAAG 60.323 55.000 9.47 0.00 36.44 4.01
3486 4932 1.941999 CTGCAGCCCCTTAAGCAAGC 61.942 60.000 0.00 0.00 36.44 4.01
3487 4933 1.680314 GCAGCCCCTTAAGCAAGCT 60.680 57.895 0.00 1.64 32.75 3.74
3488 4934 1.661498 GCAGCCCCTTAAGCAAGCTC 61.661 60.000 8.63 2.86 32.75 4.09
3489 4935 1.034292 CAGCCCCTTAAGCAAGCTCC 61.034 60.000 8.63 0.00 0.00 4.70
3490 4936 1.754621 GCCCCTTAAGCAAGCTCCC 60.755 63.158 0.00 0.00 0.00 4.30
3491 4937 1.076705 CCCCTTAAGCAAGCTCCCC 60.077 63.158 0.00 0.00 0.00 4.81
3492 4938 1.452108 CCCTTAAGCAAGCTCCCCG 60.452 63.158 0.00 0.00 0.00 5.73
3493 4939 1.452108 CCTTAAGCAAGCTCCCCGG 60.452 63.158 0.00 0.00 0.00 5.73
3494 4940 2.045340 TTAAGCAAGCTCCCCGGC 60.045 61.111 0.00 0.00 0.00 6.13
3495 4941 3.638592 TTAAGCAAGCTCCCCGGCC 62.639 63.158 0.00 0.00 0.00 6.13
3503 4949 4.468689 CTCCCCGGCCGAGAAACC 62.469 72.222 30.73 0.00 0.00 3.27
3507 4953 4.016706 CCGGCCGAGAAACCCACT 62.017 66.667 30.73 0.00 0.00 4.00
3508 4954 2.434359 CGGCCGAGAAACCCACTC 60.434 66.667 24.07 0.00 0.00 3.51
3509 4955 2.046217 GGCCGAGAAACCCACTCC 60.046 66.667 0.00 0.00 0.00 3.85
3510 4956 2.434359 GCCGAGAAACCCACTCCG 60.434 66.667 0.00 0.00 0.00 4.63
3511 4957 2.264794 CCGAGAAACCCACTCCGG 59.735 66.667 0.00 0.00 0.00 5.14
3512 4958 2.434359 CGAGAAACCCACTCCGGC 60.434 66.667 0.00 0.00 0.00 6.13
3513 4959 2.434359 GAGAAACCCACTCCGGCG 60.434 66.667 0.00 0.00 0.00 6.46
3514 4960 4.699522 AGAAACCCACTCCGGCGC 62.700 66.667 0.00 0.00 0.00 6.53
3515 4961 4.699522 GAAACCCACTCCGGCGCT 62.700 66.667 7.64 0.00 0.00 5.92
3535 4981 3.799755 GCATTGACGCACCCGGAC 61.800 66.667 0.73 0.00 39.22 4.79
3536 4982 3.487202 CATTGACGCACCCGGACG 61.487 66.667 0.73 6.47 39.22 4.79
3556 5002 3.820425 TGGCCTCACCGGAATTCT 58.180 55.556 9.46 0.00 43.94 2.40
3557 5003 2.074967 TGGCCTCACCGGAATTCTT 58.925 52.632 9.46 0.00 43.94 2.52
3558 5004 0.404040 TGGCCTCACCGGAATTCTTT 59.596 50.000 9.46 0.00 43.94 2.52
3559 5005 1.631388 TGGCCTCACCGGAATTCTTTA 59.369 47.619 9.46 0.00 43.94 1.85
3560 5006 2.241176 TGGCCTCACCGGAATTCTTTAT 59.759 45.455 9.46 0.00 43.94 1.40
3561 5007 3.456644 TGGCCTCACCGGAATTCTTTATA 59.543 43.478 9.46 0.00 43.94 0.98
3562 5008 4.104102 TGGCCTCACCGGAATTCTTTATAT 59.896 41.667 9.46 0.00 43.94 0.86
3563 5009 5.308497 TGGCCTCACCGGAATTCTTTATATA 59.692 40.000 9.46 0.00 43.94 0.86
3564 5010 6.183361 TGGCCTCACCGGAATTCTTTATATAA 60.183 38.462 9.46 0.00 43.94 0.98
3565 5011 6.713450 GGCCTCACCGGAATTCTTTATATAAA 59.287 38.462 9.46 7.66 33.16 1.40
3566 5012 7.094762 GGCCTCACCGGAATTCTTTATATAAAG 60.095 40.741 23.77 23.77 38.59 1.85
3567 5013 7.094762 GCCTCACCGGAATTCTTTATATAAAGG 60.095 40.741 27.26 16.68 38.17 3.11
3568 5014 7.094762 CCTCACCGGAATTCTTTATATAAAGGC 60.095 40.741 27.26 17.04 38.17 4.35
3569 5015 6.425721 TCACCGGAATTCTTTATATAAAGGCG 59.574 38.462 27.26 10.06 42.17 5.52
3570 5016 5.704053 ACCGGAATTCTTTATATAAAGGCGG 59.296 40.000 27.26 20.32 42.17 6.13
3571 5017 5.391629 CCGGAATTCTTTATATAAAGGCGGC 60.392 44.000 27.26 17.30 42.17 6.53
3572 5018 5.391629 CGGAATTCTTTATATAAAGGCGGCC 60.392 44.000 27.26 22.10 42.17 6.13
3573 5019 5.475564 GGAATTCTTTATATAAAGGCGGCCA 59.524 40.000 27.26 10.52 42.17 5.36
3574 5020 5.959618 ATTCTTTATATAAAGGCGGCCAC 57.040 39.130 27.26 0.00 42.17 5.01
3575 5021 4.425180 TCTTTATATAAAGGCGGCCACA 57.575 40.909 27.26 5.68 42.17 4.17
3576 5022 4.131596 TCTTTATATAAAGGCGGCCACAC 58.868 43.478 27.26 0.00 42.17 3.82
3577 5023 2.554370 TATATAAAGGCGGCCACACC 57.446 50.000 23.09 0.00 0.00 4.16
3578 5024 0.179001 ATATAAAGGCGGCCACACCC 60.179 55.000 23.09 0.00 33.26 4.61
3588 5034 2.267961 CCACACCCGGCTAACTCC 59.732 66.667 0.00 0.00 0.00 3.85
3589 5035 2.589157 CCACACCCGGCTAACTCCA 61.589 63.158 0.00 0.00 0.00 3.86
3590 5036 1.375523 CACACCCGGCTAACTCCAC 60.376 63.158 0.00 0.00 0.00 4.02
3591 5037 1.839747 ACACCCGGCTAACTCCACA 60.840 57.895 0.00 0.00 0.00 4.17
3592 5038 1.375523 CACCCGGCTAACTCCACAC 60.376 63.158 0.00 0.00 0.00 3.82
3593 5039 1.839747 ACCCGGCTAACTCCACACA 60.840 57.895 0.00 0.00 0.00 3.72
3594 5040 1.375523 CCCGGCTAACTCCACACAC 60.376 63.158 0.00 0.00 0.00 3.82
3595 5041 1.671742 CCGGCTAACTCCACACACT 59.328 57.895 0.00 0.00 0.00 3.55
3596 5042 0.892755 CCGGCTAACTCCACACACTA 59.107 55.000 0.00 0.00 0.00 2.74
3597 5043 1.403780 CCGGCTAACTCCACACACTAC 60.404 57.143 0.00 0.00 0.00 2.73
3598 5044 1.544691 CGGCTAACTCCACACACTACT 59.455 52.381 0.00 0.00 0.00 2.57
3599 5045 2.751259 CGGCTAACTCCACACACTACTA 59.249 50.000 0.00 0.00 0.00 1.82
3600 5046 3.181499 CGGCTAACTCCACACACTACTAG 60.181 52.174 0.00 0.00 0.00 2.57
3601 5047 4.015084 GGCTAACTCCACACACTACTAGA 58.985 47.826 0.00 0.00 0.00 2.43
3602 5048 4.461781 GGCTAACTCCACACACTACTAGAA 59.538 45.833 0.00 0.00 0.00 2.10
3603 5049 5.047519 GGCTAACTCCACACACTACTAGAAA 60.048 44.000 0.00 0.00 0.00 2.52
3604 5050 6.453092 GCTAACTCCACACACTACTAGAAAA 58.547 40.000 0.00 0.00 0.00 2.29
3605 5051 6.365518 GCTAACTCCACACACTACTAGAAAAC 59.634 42.308 0.00 0.00 0.00 2.43
3606 5052 5.864418 ACTCCACACACTACTAGAAAACA 57.136 39.130 0.00 0.00 0.00 2.83
3607 5053 5.844004 ACTCCACACACTACTAGAAAACAG 58.156 41.667 0.00 0.00 0.00 3.16
3608 5054 5.209818 TCCACACACTACTAGAAAACAGG 57.790 43.478 0.00 0.00 0.00 4.00
3609 5055 3.746492 CCACACACTACTAGAAAACAGGC 59.254 47.826 0.00 0.00 0.00 4.85
3610 5056 4.503296 CCACACACTACTAGAAAACAGGCT 60.503 45.833 0.00 0.00 0.00 4.58
3611 5057 5.279306 CCACACACTACTAGAAAACAGGCTA 60.279 44.000 0.00 0.00 0.00 3.93
3612 5058 6.398918 CACACACTACTAGAAAACAGGCTAT 58.601 40.000 0.00 0.00 0.00 2.97
3613 5059 6.874134 CACACACTACTAGAAAACAGGCTATT 59.126 38.462 0.00 0.00 0.00 1.73
3614 5060 6.874134 ACACACTACTAGAAAACAGGCTATTG 59.126 38.462 0.00 0.00 0.00 1.90
3615 5061 7.097192 CACACTACTAGAAAACAGGCTATTGA 58.903 38.462 0.00 0.00 0.00 2.57
3616 5062 7.766278 CACACTACTAGAAAACAGGCTATTGAT 59.234 37.037 0.00 0.00 0.00 2.57
3617 5063 8.978472 ACACTACTAGAAAACAGGCTATTGATA 58.022 33.333 0.00 0.00 0.00 2.15
3618 5064 9.817809 CACTACTAGAAAACAGGCTATTGATAA 57.182 33.333 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.007659 TCTCAAGAGGGGTTAAAATTCGC 58.992 43.478 0.00 0.00 0.00 4.70
1 2 5.803020 CTCTCAAGAGGGGTTAAAATTCG 57.197 43.478 0.00 0.00 38.48 3.34
14 15 1.743252 GCCGTTGGCCTCTCAAGAG 60.743 63.158 3.32 0.00 44.06 2.85
15 16 2.347490 GCCGTTGGCCTCTCAAGA 59.653 61.111 3.32 0.00 44.06 3.02
25 26 2.093216 GAGCATCTTCAGCCGTTGG 58.907 57.895 0.00 0.00 0.00 3.77
37 38 2.952978 TCCTCGTCTTCCTAAGAGCATC 59.047 50.000 0.00 0.00 38.41 3.91
38 39 3.019799 TCCTCGTCTTCCTAAGAGCAT 57.980 47.619 0.00 0.00 38.41 3.79
39 40 2.509166 TCCTCGTCTTCCTAAGAGCA 57.491 50.000 0.00 0.00 38.41 4.26
40 41 2.480587 GCTTCCTCGTCTTCCTAAGAGC 60.481 54.545 0.00 0.00 38.41 4.09
41 42 2.755655 TGCTTCCTCGTCTTCCTAAGAG 59.244 50.000 0.00 0.00 38.41 2.85
42 43 2.803956 TGCTTCCTCGTCTTCCTAAGA 58.196 47.619 0.00 0.00 34.51 2.10
43 44 3.452474 CATGCTTCCTCGTCTTCCTAAG 58.548 50.000 0.00 0.00 0.00 2.18
44 45 2.168521 CCATGCTTCCTCGTCTTCCTAA 59.831 50.000 0.00 0.00 0.00 2.69
45 46 1.757118 CCATGCTTCCTCGTCTTCCTA 59.243 52.381 0.00 0.00 0.00 2.94
46 47 0.539051 CCATGCTTCCTCGTCTTCCT 59.461 55.000 0.00 0.00 0.00 3.36
47 48 0.462759 CCCATGCTTCCTCGTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
48 49 0.250513 ACCCATGCTTCCTCGTCTTC 59.749 55.000 0.00 0.00 0.00 2.87
49 50 0.250513 GACCCATGCTTCCTCGTCTT 59.749 55.000 0.00 0.00 0.00 3.01
50 51 0.616111 AGACCCATGCTTCCTCGTCT 60.616 55.000 0.00 0.00 0.00 4.18
51 52 0.179097 GAGACCCATGCTTCCTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
52 53 1.901085 GAGACCCATGCTTCCTCGT 59.099 57.895 0.00 0.00 0.00 4.18
53 54 1.227089 CGAGACCCATGCTTCCTCG 60.227 63.158 9.44 9.44 40.28 4.63
54 55 0.537188 TTCGAGACCCATGCTTCCTC 59.463 55.000 0.00 0.00 0.00 3.71
55 56 0.539051 CTTCGAGACCCATGCTTCCT 59.461 55.000 0.00 0.00 0.00 3.36
56 57 0.537188 TCTTCGAGACCCATGCTTCC 59.463 55.000 0.00 0.00 0.00 3.46
57 58 2.386661 TTCTTCGAGACCCATGCTTC 57.613 50.000 0.00 0.00 0.00 3.86
58 59 2.039084 AGTTTCTTCGAGACCCATGCTT 59.961 45.455 0.00 0.00 0.00 3.91
59 60 1.625818 AGTTTCTTCGAGACCCATGCT 59.374 47.619 0.00 0.00 0.00 3.79
60 61 2.100605 AGTTTCTTCGAGACCCATGC 57.899 50.000 0.00 0.00 0.00 4.06
61 62 2.160417 GCAAGTTTCTTCGAGACCCATG 59.840 50.000 0.00 0.00 0.00 3.66
62 63 2.427506 GCAAGTTTCTTCGAGACCCAT 58.572 47.619 0.00 0.00 0.00 4.00
63 64 1.872237 CGCAAGTTTCTTCGAGACCCA 60.872 52.381 0.00 0.00 0.00 4.51
64 65 0.790814 CGCAAGTTTCTTCGAGACCC 59.209 55.000 0.00 0.00 0.00 4.46
83 84 3.548268 GTGTAGCAATGAACTAGCGAGAC 59.452 47.826 0.00 0.00 0.00 3.36
87 88 2.979006 CGTGTAGCAATGAACTAGCG 57.021 50.000 0.00 0.00 0.00 4.26
102 103 1.863662 CTAGGGTCGTGTGAGCGTGT 61.864 60.000 0.50 0.00 43.60 4.49
106 107 0.389948 CAACCTAGGGTCGTGTGAGC 60.390 60.000 14.81 0.00 41.93 4.26
109 110 0.320421 CCACAACCTAGGGTCGTGTG 60.320 60.000 20.87 21.11 38.81 3.82
125 130 0.822121 ACCCGCCTCAAGTTTTCCAC 60.822 55.000 0.00 0.00 0.00 4.02
166 171 1.676967 CCAGCTCAGCCCTTGGAAC 60.677 63.158 0.00 0.00 32.34 3.62
171 176 0.771127 TGTAAACCAGCTCAGCCCTT 59.229 50.000 0.00 0.00 0.00 3.95
173 178 1.474077 CATTGTAAACCAGCTCAGCCC 59.526 52.381 0.00 0.00 0.00 5.19
183 188 2.560981 CCCACCTTCCACATTGTAAACC 59.439 50.000 0.00 0.00 0.00 3.27
184 189 2.029380 GCCCACCTTCCACATTGTAAAC 60.029 50.000 0.00 0.00 0.00 2.01
197 202 1.073199 CTCCTTTCACGCCCACCTT 59.927 57.895 0.00 0.00 0.00 3.50
198 203 1.841556 TCTCCTTTCACGCCCACCT 60.842 57.895 0.00 0.00 0.00 4.00
199 204 1.671379 GTCTCCTTTCACGCCCACC 60.671 63.158 0.00 0.00 0.00 4.61
200 205 2.027625 CGTCTCCTTTCACGCCCAC 61.028 63.158 0.00 0.00 0.00 4.61
201 206 2.342279 CGTCTCCTTTCACGCCCA 59.658 61.111 0.00 0.00 0.00 5.36
202 207 2.434359 CCGTCTCCTTTCACGCCC 60.434 66.667 0.00 0.00 34.58 6.13
203 208 1.446272 CTCCGTCTCCTTTCACGCC 60.446 63.158 0.00 0.00 34.58 5.68
204 209 0.038526 TTCTCCGTCTCCTTTCACGC 60.039 55.000 0.00 0.00 34.58 5.34
205 210 1.402984 CCTTCTCCGTCTCCTTTCACG 60.403 57.143 0.00 0.00 35.72 4.35
206 211 1.673329 GCCTTCTCCGTCTCCTTTCAC 60.673 57.143 0.00 0.00 0.00 3.18
207 212 0.608640 GCCTTCTCCGTCTCCTTTCA 59.391 55.000 0.00 0.00 0.00 2.69
208 213 0.608640 TGCCTTCTCCGTCTCCTTTC 59.391 55.000 0.00 0.00 0.00 2.62
209 214 0.321996 GTGCCTTCTCCGTCTCCTTT 59.678 55.000 0.00 0.00 0.00 3.11
219 224 1.633852 CTTGCTCTGCGTGCCTTCTC 61.634 60.000 0.00 0.00 0.00 2.87
231 236 0.322277 CCACCATCACTGCTTGCTCT 60.322 55.000 0.00 0.00 0.00 4.09
246 251 0.666577 GTCACTAGTCACACGCCACC 60.667 60.000 0.00 0.00 0.00 4.61
266 271 3.586100 AGGTTCCACACACACAAAAAC 57.414 42.857 0.00 0.00 0.00 2.43
278 284 5.310451 TGGTTAACAAGATGTAGGTTCCAC 58.690 41.667 8.10 0.00 0.00 4.02
287 293 6.594788 AGCAATCAATGGTTAACAAGATGT 57.405 33.333 8.10 0.00 35.94 3.06
289 295 7.394359 ACAGTAGCAATCAATGGTTAACAAGAT 59.606 33.333 8.10 2.12 40.93 2.40
299 305 5.178061 TCTGTGTACAGTAGCAATCAATGG 58.822 41.667 11.44 0.00 44.12 3.16
303 309 5.793817 ACATTCTGTGTACAGTAGCAATCA 58.206 37.500 11.44 0.00 44.12 2.57
305 311 4.864806 CGACATTCTGTGTACAGTAGCAAT 59.135 41.667 11.44 2.15 42.36 3.56
307 313 3.254903 ACGACATTCTGTGTACAGTAGCA 59.745 43.478 11.44 0.00 42.36 3.49
308 314 3.608506 CACGACATTCTGTGTACAGTAGC 59.391 47.826 11.44 0.00 42.36 3.58
309 315 4.082949 TCCACGACATTCTGTGTACAGTAG 60.083 45.833 11.44 0.00 42.36 2.57
310 316 3.822167 TCCACGACATTCTGTGTACAGTA 59.178 43.478 11.44 3.02 42.36 2.74
314 320 4.510340 AGTTTTCCACGACATTCTGTGTAC 59.490 41.667 0.00 0.00 42.36 2.90
315 321 4.699637 AGTTTTCCACGACATTCTGTGTA 58.300 39.130 0.00 0.00 42.36 2.90
316 322 3.541632 AGTTTTCCACGACATTCTGTGT 58.458 40.909 0.00 0.00 45.83 3.72
317 323 3.362986 CGAGTTTTCCACGACATTCTGTG 60.363 47.826 0.00 0.00 35.87 3.66
318 324 2.800544 CGAGTTTTCCACGACATTCTGT 59.199 45.455 0.00 0.00 0.00 3.41
319 325 3.057019 TCGAGTTTTCCACGACATTCTG 58.943 45.455 0.00 0.00 0.00 3.02
351 359 1.807573 CAGCCTTCGGAAGTCTCGC 60.808 63.158 16.07 11.84 0.00 5.03
358 366 0.108585 AAACAGCTCAGCCTTCGGAA 59.891 50.000 0.00 0.00 0.00 4.30
359 367 0.108585 AAAACAGCTCAGCCTTCGGA 59.891 50.000 0.00 0.00 0.00 4.55
362 370 3.142174 AGTGTAAAACAGCTCAGCCTTC 58.858 45.455 0.00 0.00 0.00 3.46
376 384 6.403049 TGTGAACTGAACTCTCAAGTGTAAA 58.597 36.000 0.00 0.00 35.36 2.01
386 394 2.171448 AGCCACTTGTGAACTGAACTCT 59.829 45.455 1.89 0.00 0.00 3.24
387 395 2.289002 CAGCCACTTGTGAACTGAACTC 59.711 50.000 14.36 0.00 0.00 3.01
406 436 1.654105 GTAAACGGTCGATGACAGCAG 59.346 52.381 0.00 0.00 33.68 4.24
562 600 3.499737 CGGGTCACGGCATTGCTC 61.500 66.667 8.82 0.00 39.42 4.26
696 1807 1.600413 CCGTGAAACAGCAAGGAAAGC 60.600 52.381 0.00 0.00 39.40 3.51
759 1870 1.271379 GCAGATGGGTTGTAGTGTGGT 60.271 52.381 0.00 0.00 0.00 4.16
788 1927 0.179124 GAGAGCTGCTAACCGAGTGG 60.179 60.000 0.15 0.00 42.84 4.00
807 1946 1.033574 GAGTACGGGGTGGATGAGAG 58.966 60.000 0.00 0.00 0.00 3.20
830 1969 2.452813 CGGTCAAACGAGATGGGCG 61.453 63.158 0.00 0.00 35.47 6.13
844 1983 3.056328 GCTTCAGTTGGGGCGGTC 61.056 66.667 0.00 0.00 0.00 4.79
871 2010 3.726607 CAGATGATCACCTTGTCCTAGC 58.273 50.000 0.00 0.00 0.00 3.42
892 2031 2.258109 AGGAATTCGTATAGAGGGGGC 58.742 52.381 0.00 0.00 0.00 5.80
941 2087 0.877071 TAGGTAGCGGCGTATACTGC 59.123 55.000 18.95 10.11 42.55 4.40
985 2131 2.661675 CGTGTTGACTGTTACCGATGAG 59.338 50.000 0.00 0.00 0.00 2.90
991 2137 2.412089 GAGATGCGTGTTGACTGTTACC 59.588 50.000 0.00 0.00 0.00 2.85
1006 2405 2.681848 CCAAGGAACATGAGTGAGATGC 59.318 50.000 0.00 0.00 0.00 3.91
1028 2427 1.067495 GTGTCCGCTAGATATCCAGGC 60.067 57.143 0.00 0.82 0.00 4.85
1048 2447 4.205065 TCTGCCATGCCTAAAAATTTGG 57.795 40.909 0.00 0.00 0.00 3.28
1103 2502 4.710528 GTCAACTAAACTTGACGTCCAG 57.289 45.455 14.12 14.43 40.44 3.86
1115 2514 2.177394 TGCCATGCTCGTCAACTAAA 57.823 45.000 0.00 0.00 0.00 1.85
1116 2515 2.177394 TTGCCATGCTCGTCAACTAA 57.823 45.000 0.00 0.00 0.00 2.24
1123 2522 2.764314 GCGGATTTGCCATGCTCGT 61.764 57.895 0.00 0.00 35.94 4.18
1132 2531 1.168714 AAGAGTTGAGGCGGATTTGC 58.831 50.000 0.00 0.00 0.00 3.68
1139 2538 0.931005 GCGGAATAAGAGTTGAGGCG 59.069 55.000 0.00 0.00 0.00 5.52
1142 2541 3.526931 TCTGGCGGAATAAGAGTTGAG 57.473 47.619 0.00 0.00 0.00 3.02
1149 2548 3.363178 GCGATTTTTCTGGCGGAATAAG 58.637 45.455 10.03 2.28 33.53 1.73
1152 2551 0.455815 GGCGATTTTTCTGGCGGAAT 59.544 50.000 10.03 0.00 33.53 3.01
1178 2577 2.352960 GAGGATGTCAATTTCAGTCCGC 59.647 50.000 0.00 0.00 0.00 5.54
1180 2579 2.352960 GCGAGGATGTCAATTTCAGTCC 59.647 50.000 0.00 0.00 0.00 3.85
1181 2580 2.029728 CGCGAGGATGTCAATTTCAGTC 59.970 50.000 0.00 0.00 0.00 3.51
1226 2628 3.379372 AGATTTTCAGACATGGCAATCGG 59.621 43.478 0.00 0.00 33.67 4.18
1249 2652 3.683340 AGAAAGGCTAAAAATCCGACGTC 59.317 43.478 5.18 5.18 0.00 4.34
1252 2655 6.679327 ATACAGAAAGGCTAAAAATCCGAC 57.321 37.500 0.00 0.00 0.00 4.79
1265 2668 6.942576 TCTCCCTGAAAAGAAATACAGAAAGG 59.057 38.462 0.00 0.00 32.90 3.11
1313 2716 3.682292 GACCACCATCTCCGGCACC 62.682 68.421 0.00 0.00 0.00 5.01
1399 2802 0.752054 CATGAGGTCCTCCTGAGAGC 59.248 60.000 16.97 0.00 45.24 4.09
1439 2842 0.108615 ATTTCAGCTCCAGGTCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
1471 2874 3.138798 CAGTGATGGGCAGCCTGC 61.139 66.667 12.43 8.55 44.08 4.85
1632 3035 2.155279 GGGTCTCAGCAGGTTCTTTTC 58.845 52.381 0.00 0.00 0.00 2.29
1634 3037 1.349357 GAGGGTCTCAGCAGGTTCTTT 59.651 52.381 0.00 0.00 0.00 2.52
1650 3053 2.809601 CTTTGCGACGTCCGAGGG 60.810 66.667 10.58 0.00 41.76 4.30
1743 3146 2.223923 CGACCAGAGGGCTGAGATAAAG 60.224 54.545 0.00 0.00 45.17 1.85
1760 3163 1.068954 CCTTGAAGAAGCTTTGCGACC 60.069 52.381 0.00 0.00 0.00 4.79
1764 3167 1.336609 CCTGCCTTGAAGAAGCTTTGC 60.337 52.381 0.00 0.00 0.00 3.68
1796 3199 0.182299 GGGATCCTTGCTCCTCCTTG 59.818 60.000 12.58 0.00 33.05 3.61
2099 3502 3.519579 CAACTCAGCGAGATCAACATCT 58.480 45.455 11.64 0.00 42.59 2.90
2100 3503 2.606725 CCAACTCAGCGAGATCAACATC 59.393 50.000 11.64 0.00 33.32 3.06
2102 3505 1.338105 CCCAACTCAGCGAGATCAACA 60.338 52.381 11.64 0.00 33.32 3.33
2114 3517 0.255890 GGCCTATTCTGCCCAACTCA 59.744 55.000 0.00 0.00 43.33 3.41
2115 3518 0.815615 CGGCCTATTCTGCCCAACTC 60.816 60.000 0.00 0.00 46.48 3.01
2130 3533 1.026718 CAGAATGGGTCTTGACGGCC 61.027 60.000 0.00 0.00 32.70 6.13
2263 3667 2.835701 TTCTAGTTGCGCTGCTCCGG 62.836 60.000 9.73 0.00 0.00 5.14
2273 3677 1.921230 GTGCGCTCTAGTTCTAGTTGC 59.079 52.381 9.73 10.47 0.00 4.17
2354 3758 2.113243 AAACTCCGGTCACTGAGGGC 62.113 60.000 0.00 0.00 32.82 5.19
2355 3759 0.320771 CAAACTCCGGTCACTGAGGG 60.321 60.000 0.00 0.00 32.82 4.30
2359 3763 1.845809 GCTGCAAACTCCGGTCACTG 61.846 60.000 0.00 0.00 0.00 3.66
2401 3805 3.259832 GAAAGACTCGATCGCCTCC 57.740 57.895 11.09 0.00 0.00 4.30
2486 3890 4.156008 GGTTTCAACGACAGGCTTTGATAT 59.844 41.667 0.00 0.00 35.09 1.63
2619 4024 3.991773 AGCGAGATTTTAGCGTAAACACA 59.008 39.130 0.00 0.00 35.78 3.72
2620 4025 4.090930 TGAGCGAGATTTTAGCGTAAACAC 59.909 41.667 0.00 0.00 35.78 3.32
2622 4027 4.835199 TGAGCGAGATTTTAGCGTAAAC 57.165 40.909 0.00 0.00 35.78 2.01
2623 4028 5.106442 TCATGAGCGAGATTTTAGCGTAAA 58.894 37.500 0.00 0.00 35.78 2.01
2624 4029 4.678622 TCATGAGCGAGATTTTAGCGTAA 58.321 39.130 0.00 0.00 35.78 3.18
2625 4030 4.301637 TCATGAGCGAGATTTTAGCGTA 57.698 40.909 0.00 0.00 35.78 4.42
2626 4031 3.165058 TCATGAGCGAGATTTTAGCGT 57.835 42.857 0.00 0.00 35.78 5.07
2627 4032 4.376819 GGAATCATGAGCGAGATTTTAGCG 60.377 45.833 0.09 0.00 34.79 4.26
2628 4033 4.083590 GGGAATCATGAGCGAGATTTTAGC 60.084 45.833 0.09 0.00 34.79 3.09
2629 4034 5.059161 TGGGAATCATGAGCGAGATTTTAG 58.941 41.667 0.09 0.00 34.79 1.85
2637 4042 2.290260 ACAAACTGGGAATCATGAGCGA 60.290 45.455 0.09 0.00 0.00 4.93
2639 4044 3.256631 ACAACAAACTGGGAATCATGAGC 59.743 43.478 0.09 0.00 0.00 4.26
2728 4174 7.722795 TCGTTTCTGATCAAATGTGAAGTTA 57.277 32.000 0.00 0.00 37.30 2.24
2732 4178 8.870160 AATTTTCGTTTCTGATCAAATGTGAA 57.130 26.923 0.00 0.00 37.30 3.18
2764 4210 2.158385 TGGAGTTGCCCTTAATGTGGTT 60.158 45.455 0.00 0.00 34.97 3.67
2773 4219 1.228675 CTGCCTTGGAGTTGCCCTT 60.229 57.895 0.00 0.00 34.97 3.95
2780 4226 3.307762 GGTTTATGAGTCTGCCTTGGAGT 60.308 47.826 0.00 0.00 0.00 3.85
2784 4230 3.691609 GGAAGGTTTATGAGTCTGCCTTG 59.308 47.826 0.00 0.00 36.58 3.61
2787 4233 2.280628 CGGAAGGTTTATGAGTCTGCC 58.719 52.381 0.00 0.00 0.00 4.85
2790 4236 3.335579 GTTGCGGAAGGTTTATGAGTCT 58.664 45.455 0.00 0.00 0.00 3.24
2794 4240 1.270947 ACGGTTGCGGAAGGTTTATGA 60.271 47.619 0.00 0.00 0.00 2.15
2796 4242 1.808343 GAACGGTTGCGGAAGGTTTAT 59.192 47.619 0.00 0.00 0.00 1.40
2800 4246 1.597027 CTGAACGGTTGCGGAAGGT 60.597 57.895 0.00 0.00 0.00 3.50
2801 4247 0.882927 TTCTGAACGGTTGCGGAAGG 60.883 55.000 0.00 0.00 0.00 3.46
2802 4248 0.234884 GTTCTGAACGGTTGCGGAAG 59.765 55.000 4.57 0.00 30.59 3.46
2803 4249 2.313267 GTTCTGAACGGTTGCGGAA 58.687 52.632 4.57 4.50 0.00 4.30
2804 4250 4.036977 GTTCTGAACGGTTGCGGA 57.963 55.556 4.57 0.00 0.00 5.54
2844 4290 1.333881 CCGCTTCGTAGACCGATACAG 60.334 57.143 0.00 0.00 46.75 2.74
2853 4299 1.136147 GTTCGAGCCGCTTCGTAGA 59.864 57.895 0.00 0.00 41.22 2.59
2859 4305 1.374252 AATCACGTTCGAGCCGCTT 60.374 52.632 6.49 0.00 0.00 4.68
3211 4657 2.190841 CGCACGGGGAGGTGTTTTT 61.191 57.895 0.00 0.00 40.08 1.94
3212 4658 2.593436 CGCACGGGGAGGTGTTTT 60.593 61.111 0.00 0.00 40.08 2.43
3253 4699 3.315635 GCTCTACAGCGGCATGAATGC 62.316 57.143 6.73 6.73 43.87 3.56
3254 4700 0.585357 GCTCTACAGCGGCATGAATG 59.415 55.000 1.45 0.00 35.39 2.67
3255 4701 2.997899 GCTCTACAGCGGCATGAAT 58.002 52.632 1.45 0.00 35.39 2.57
3256 4702 4.521075 GCTCTACAGCGGCATGAA 57.479 55.556 1.45 0.00 35.39 2.57
3272 4718 1.831389 TTCAGTGTTGAGCTTCGCGC 61.831 55.000 0.00 0.00 34.15 6.86
3273 4719 0.162507 CTTCAGTGTTGAGCTTCGCG 59.837 55.000 0.00 0.00 34.15 5.87
3274 4720 1.502231 TCTTCAGTGTTGAGCTTCGC 58.498 50.000 0.00 0.00 34.15 4.70
3275 4721 2.414481 CCATCTTCAGTGTTGAGCTTCG 59.586 50.000 0.00 0.00 34.15 3.79
3276 4722 2.161211 GCCATCTTCAGTGTTGAGCTTC 59.839 50.000 0.00 0.00 34.15 3.86
3277 4723 2.157738 GCCATCTTCAGTGTTGAGCTT 58.842 47.619 0.00 0.00 34.15 3.74
3278 4724 1.350351 AGCCATCTTCAGTGTTGAGCT 59.650 47.619 0.00 0.00 34.15 4.09
3279 4725 1.818642 AGCCATCTTCAGTGTTGAGC 58.181 50.000 0.00 0.00 34.15 4.26
3280 4726 4.825422 TCTAAGCCATCTTCAGTGTTGAG 58.175 43.478 0.00 0.00 34.15 3.02
3281 4727 4.528206 TCTCTAAGCCATCTTCAGTGTTGA 59.472 41.667 0.00 0.00 33.85 3.18
3282 4728 4.825422 TCTCTAAGCCATCTTCAGTGTTG 58.175 43.478 0.00 0.00 33.85 3.33
3283 4729 4.081198 CCTCTCTAAGCCATCTTCAGTGTT 60.081 45.833 0.00 0.00 33.85 3.32
3284 4730 3.450457 CCTCTCTAAGCCATCTTCAGTGT 59.550 47.826 0.00 0.00 33.85 3.55
3285 4731 3.703556 TCCTCTCTAAGCCATCTTCAGTG 59.296 47.826 0.00 0.00 33.85 3.66
3286 4732 3.704061 GTCCTCTCTAAGCCATCTTCAGT 59.296 47.826 0.00 0.00 33.85 3.41
3287 4733 3.243367 CGTCCTCTCTAAGCCATCTTCAG 60.243 52.174 0.00 0.00 33.85 3.02
3288 4734 2.690497 CGTCCTCTCTAAGCCATCTTCA 59.310 50.000 0.00 0.00 33.85 3.02
3289 4735 2.691011 ACGTCCTCTCTAAGCCATCTTC 59.309 50.000 0.00 0.00 33.85 2.87
3290 4736 2.428890 CACGTCCTCTCTAAGCCATCTT 59.571 50.000 0.00 0.00 36.35 2.40
3291 4737 2.028130 CACGTCCTCTCTAAGCCATCT 58.972 52.381 0.00 0.00 0.00 2.90
3292 4738 2.025155 TCACGTCCTCTCTAAGCCATC 58.975 52.381 0.00 0.00 0.00 3.51
3293 4739 1.751924 GTCACGTCCTCTCTAAGCCAT 59.248 52.381 0.00 0.00 0.00 4.40
3294 4740 1.174783 GTCACGTCCTCTCTAAGCCA 58.825 55.000 0.00 0.00 0.00 4.75
3295 4741 0.456628 GGTCACGTCCTCTCTAAGCC 59.543 60.000 0.00 0.00 0.00 4.35
3296 4742 0.456628 GGGTCACGTCCTCTCTAAGC 59.543 60.000 0.00 0.00 0.00 3.09
3297 4743 1.104630 GGGGTCACGTCCTCTCTAAG 58.895 60.000 0.00 0.00 0.00 2.18
3298 4744 0.702902 AGGGGTCACGTCCTCTCTAA 59.297 55.000 0.00 0.00 31.85 2.10
3299 4745 2.395613 AGGGGTCACGTCCTCTCTA 58.604 57.895 0.00 0.00 31.85 2.43
3300 4746 3.182284 AGGGGTCACGTCCTCTCT 58.818 61.111 0.00 0.00 31.85 3.10
3301 4747 3.605895 GAGGGGTCACGTCCTCTC 58.394 66.667 12.56 10.14 46.11 3.20
3304 4750 1.908793 CTGTGAGGGGTCACGTCCT 60.909 63.158 0.00 0.00 43.12 3.85
3305 4751 2.657237 CTGTGAGGGGTCACGTCC 59.343 66.667 1.34 0.00 43.12 4.79
3306 4752 2.048127 GCTGTGAGGGGTCACGTC 60.048 66.667 1.34 0.00 43.12 4.34
3307 4753 3.626924 GGCTGTGAGGGGTCACGT 61.627 66.667 1.34 0.00 43.12 4.49
3308 4754 3.302347 GAGGCTGTGAGGGGTCACG 62.302 68.421 0.00 0.00 43.12 4.35
3309 4755 2.665603 GAGGCTGTGAGGGGTCAC 59.334 66.667 0.00 0.00 40.78 3.67
3310 4756 2.607750 GGAGGCTGTGAGGGGTCA 60.608 66.667 0.00 0.00 0.00 4.02
3311 4757 3.775654 CGGAGGCTGTGAGGGGTC 61.776 72.222 0.00 0.00 0.00 4.46
3356 4802 4.640855 AGACGTGTCGTGGTGGCG 62.641 66.667 0.00 0.00 41.37 5.69
3357 4803 2.733593 GAGACGTGTCGTGGTGGC 60.734 66.667 0.00 0.00 41.37 5.01
3358 4804 2.049433 GGAGACGTGTCGTGGTGG 60.049 66.667 6.62 0.00 41.37 4.61
3377 4823 1.647084 GTTGAACAGGTGCGGACAC 59.353 57.895 9.96 0.00 46.66 3.67
3378 4824 1.885388 CGTTGAACAGGTGCGGACA 60.885 57.895 9.96 0.00 0.00 4.02
3379 4825 1.828331 GACGTTGAACAGGTGCGGAC 61.828 60.000 0.00 0.00 0.00 4.79
3380 4826 1.593209 GACGTTGAACAGGTGCGGA 60.593 57.895 0.00 0.00 0.00 5.54
3381 4827 2.935955 GACGTTGAACAGGTGCGG 59.064 61.111 0.00 0.00 0.00 5.69
3382 4828 2.544359 CGACGTTGAACAGGTGCG 59.456 61.111 0.00 0.00 0.00 5.34
3383 4829 1.557443 CTCCGACGTTGAACAGGTGC 61.557 60.000 3.74 0.00 0.00 5.01
3384 4830 0.031585 TCTCCGACGTTGAACAGGTG 59.968 55.000 3.74 0.00 0.00 4.00
3385 4831 0.966920 ATCTCCGACGTTGAACAGGT 59.033 50.000 3.74 0.00 0.00 4.00
3386 4832 1.336887 ACATCTCCGACGTTGAACAGG 60.337 52.381 3.74 0.00 0.00 4.00
3387 4833 1.721389 CACATCTCCGACGTTGAACAG 59.279 52.381 3.74 0.00 0.00 3.16
3388 4834 1.067974 ACACATCTCCGACGTTGAACA 59.932 47.619 3.74 0.00 0.00 3.18
3389 4835 1.455786 CACACATCTCCGACGTTGAAC 59.544 52.381 3.74 0.00 0.00 3.18
3390 4836 1.338655 TCACACATCTCCGACGTTGAA 59.661 47.619 3.74 0.00 0.00 2.69
3391 4837 0.955905 TCACACATCTCCGACGTTGA 59.044 50.000 3.74 0.00 0.00 3.18
3392 4838 1.060713 GTCACACATCTCCGACGTTG 58.939 55.000 0.00 0.00 0.00 4.10
3393 4839 0.959553 AGTCACACATCTCCGACGTT 59.040 50.000 0.00 0.00 33.56 3.99
3394 4840 0.241213 CAGTCACACATCTCCGACGT 59.759 55.000 0.00 0.00 33.56 4.34
3395 4841 0.456824 CCAGTCACACATCTCCGACG 60.457 60.000 0.00 0.00 33.56 5.12
3396 4842 0.888619 TCCAGTCACACATCTCCGAC 59.111 55.000 0.00 0.00 0.00 4.79
3397 4843 0.888619 GTCCAGTCACACATCTCCGA 59.111 55.000 0.00 0.00 0.00 4.55
3398 4844 0.456824 CGTCCAGTCACACATCTCCG 60.457 60.000 0.00 0.00 0.00 4.63
3399 4845 0.108615 CCGTCCAGTCACACATCTCC 60.109 60.000 0.00 0.00 0.00 3.71
3400 4846 0.108615 CCCGTCCAGTCACACATCTC 60.109 60.000 0.00 0.00 0.00 2.75
3401 4847 0.541998 TCCCGTCCAGTCACACATCT 60.542 55.000 0.00 0.00 0.00 2.90
3402 4848 0.320374 TTCCCGTCCAGTCACACATC 59.680 55.000 0.00 0.00 0.00 3.06
3403 4849 0.321671 CTTCCCGTCCAGTCACACAT 59.678 55.000 0.00 0.00 0.00 3.21
3404 4850 1.745890 CTTCCCGTCCAGTCACACA 59.254 57.895 0.00 0.00 0.00 3.72
3405 4851 1.004918 CCTTCCCGTCCAGTCACAC 60.005 63.158 0.00 0.00 0.00 3.82
3406 4852 2.214216 CCCTTCCCGTCCAGTCACA 61.214 63.158 0.00 0.00 0.00 3.58
3407 4853 1.911766 TCCCTTCCCGTCCAGTCAC 60.912 63.158 0.00 0.00 0.00 3.67
3408 4854 1.911766 GTCCCTTCCCGTCCAGTCA 60.912 63.158 0.00 0.00 0.00 3.41
3409 4855 1.911766 TGTCCCTTCCCGTCCAGTC 60.912 63.158 0.00 0.00 0.00 3.51
3410 4856 2.203182 TGTCCCTTCCCGTCCAGT 59.797 61.111 0.00 0.00 0.00 4.00
3411 4857 1.553690 ATGTGTCCCTTCCCGTCCAG 61.554 60.000 0.00 0.00 0.00 3.86
3412 4858 0.252330 TATGTGTCCCTTCCCGTCCA 60.252 55.000 0.00 0.00 0.00 4.02
3413 4859 1.070289 GATATGTGTCCCTTCCCGTCC 59.930 57.143 0.00 0.00 0.00 4.79
3414 4860 2.040178 AGATATGTGTCCCTTCCCGTC 58.960 52.381 0.00 0.00 0.00 4.79
3415 4861 2.176247 AGATATGTGTCCCTTCCCGT 57.824 50.000 0.00 0.00 0.00 5.28
3416 4862 2.299297 GGTAGATATGTGTCCCTTCCCG 59.701 54.545 0.00 0.00 0.00 5.14
3417 4863 2.299297 CGGTAGATATGTGTCCCTTCCC 59.701 54.545 0.00 0.00 0.00 3.97
3418 4864 2.288886 GCGGTAGATATGTGTCCCTTCC 60.289 54.545 0.00 0.00 0.00 3.46
3419 4865 2.607282 CGCGGTAGATATGTGTCCCTTC 60.607 54.545 0.00 0.00 0.00 3.46
3420 4866 1.340248 CGCGGTAGATATGTGTCCCTT 59.660 52.381 0.00 0.00 0.00 3.95
3421 4867 0.959553 CGCGGTAGATATGTGTCCCT 59.040 55.000 0.00 0.00 0.00 4.20
3422 4868 0.666577 GCGCGGTAGATATGTGTCCC 60.667 60.000 8.83 0.00 0.00 4.46
3423 4869 0.666577 GGCGCGGTAGATATGTGTCC 60.667 60.000 8.83 0.00 0.00 4.02
3424 4870 0.666577 GGGCGCGGTAGATATGTGTC 60.667 60.000 8.83 0.00 0.00 3.67
3425 4871 1.366366 GGGCGCGGTAGATATGTGT 59.634 57.895 8.83 0.00 0.00 3.72
3426 4872 1.733041 CGGGCGCGGTAGATATGTG 60.733 63.158 16.41 0.00 0.00 3.21
3427 4873 1.741327 AACGGGCGCGGTAGATATGT 61.741 55.000 27.52 0.00 0.00 2.29
3428 4874 1.006571 AACGGGCGCGGTAGATATG 60.007 57.895 27.52 0.00 0.00 1.78
3429 4875 1.288127 GAACGGGCGCGGTAGATAT 59.712 57.895 27.52 0.67 0.00 1.63
3430 4876 1.665264 TTGAACGGGCGCGGTAGATA 61.665 55.000 27.52 5.50 0.00 1.98
3431 4877 2.306255 ATTGAACGGGCGCGGTAGAT 62.306 55.000 27.52 14.87 0.00 1.98
3432 4878 3.009192 ATTGAACGGGCGCGGTAGA 62.009 57.895 27.52 13.13 0.00 2.59
3433 4879 2.510691 ATTGAACGGGCGCGGTAG 60.511 61.111 27.52 0.00 0.00 3.18
3434 4880 2.816083 CATTGAACGGGCGCGGTA 60.816 61.111 27.52 7.19 0.00 4.02
3436 4882 4.160635 GACATTGAACGGGCGCGG 62.161 66.667 27.52 10.59 0.00 6.46
3437 4883 4.499023 CGACATTGAACGGGCGCG 62.499 66.667 22.69 22.69 0.00 6.86
3438 4884 2.961669 AACGACATTGAACGGGCGC 61.962 57.895 0.00 0.00 0.00 6.53
3439 4885 1.154488 CAACGACATTGAACGGGCG 60.154 57.895 0.00 0.00 41.23 6.13
3440 4886 0.110373 GACAACGACATTGAACGGGC 60.110 55.000 0.00 0.00 41.23 6.13
3441 4887 0.515564 GGACAACGACATTGAACGGG 59.484 55.000 0.00 6.66 41.23 5.28
3442 4888 1.222300 TGGACAACGACATTGAACGG 58.778 50.000 0.00 0.45 41.23 4.44
3443 4889 2.159707 GGATGGACAACGACATTGAACG 60.160 50.000 0.00 0.00 41.23 3.95
3444 4890 2.159707 CGGATGGACAACGACATTGAAC 60.160 50.000 0.00 0.00 41.23 3.18
3445 4891 2.073056 CGGATGGACAACGACATTGAA 58.927 47.619 0.00 0.00 41.23 2.69
3446 4892 1.001520 ACGGATGGACAACGACATTGA 59.998 47.619 6.75 0.00 41.23 2.57
3447 4893 1.393539 GACGGATGGACAACGACATTG 59.606 52.381 6.75 0.00 44.60 2.82
3448 4894 1.275291 AGACGGATGGACAACGACATT 59.725 47.619 6.75 0.00 0.00 2.71
3449 4895 0.895530 AGACGGATGGACAACGACAT 59.104 50.000 6.75 0.00 0.00 3.06
3450 4896 0.038618 CAGACGGATGGACAACGACA 60.039 55.000 6.75 0.00 0.00 4.35
3451 4897 1.352156 GCAGACGGATGGACAACGAC 61.352 60.000 6.75 1.65 0.00 4.34
3452 4898 1.080093 GCAGACGGATGGACAACGA 60.080 57.895 6.75 0.00 0.00 3.85
3453 4899 1.354337 CTGCAGACGGATGGACAACG 61.354 60.000 8.42 0.00 0.00 4.10
3454 4900 1.639298 GCTGCAGACGGATGGACAAC 61.639 60.000 20.43 0.00 0.00 3.32
3455 4901 1.375908 GCTGCAGACGGATGGACAA 60.376 57.895 20.43 0.00 0.00 3.18
3456 4902 2.265739 GCTGCAGACGGATGGACA 59.734 61.111 20.43 0.00 0.00 4.02
3457 4903 2.512515 GGCTGCAGACGGATGGAC 60.513 66.667 20.43 0.00 0.00 4.02
3458 4904 3.785859 GGGCTGCAGACGGATGGA 61.786 66.667 20.43 0.00 0.00 3.41
3459 4905 4.864334 GGGGCTGCAGACGGATGG 62.864 72.222 20.43 0.00 0.00 3.51
3460 4906 1.971505 TAAGGGGCTGCAGACGGATG 61.972 60.000 20.43 0.00 0.00 3.51
3461 4907 1.271840 TTAAGGGGCTGCAGACGGAT 61.272 55.000 20.43 6.35 0.00 4.18
3462 4908 1.899437 CTTAAGGGGCTGCAGACGGA 61.899 60.000 20.43 0.00 0.00 4.69
3463 4909 1.450312 CTTAAGGGGCTGCAGACGG 60.450 63.158 20.43 0.00 0.00 4.79
3464 4910 2.109126 GCTTAAGGGGCTGCAGACG 61.109 63.158 20.43 0.81 0.00 4.18
3465 4911 0.609131 TTGCTTAAGGGGCTGCAGAC 60.609 55.000 20.43 16.66 36.75 3.51
3466 4912 0.322816 CTTGCTTAAGGGGCTGCAGA 60.323 55.000 20.43 0.00 36.75 4.26
3467 4913 1.941999 GCTTGCTTAAGGGGCTGCAG 61.942 60.000 10.11 10.11 36.75 4.41
3468 4914 1.978617 GCTTGCTTAAGGGGCTGCA 60.979 57.895 4.29 0.00 33.18 4.41
3469 4915 1.661498 GAGCTTGCTTAAGGGGCTGC 61.661 60.000 4.29 0.00 33.13 5.25
3470 4916 1.034292 GGAGCTTGCTTAAGGGGCTG 61.034 60.000 4.29 0.00 33.13 4.85
3471 4917 1.304617 GGAGCTTGCTTAAGGGGCT 59.695 57.895 4.29 0.00 35.86 5.19
3472 4918 1.754621 GGGAGCTTGCTTAAGGGGC 60.755 63.158 4.29 0.00 0.00 5.80
3473 4919 1.076705 GGGGAGCTTGCTTAAGGGG 60.077 63.158 4.29 0.00 0.00 4.79
3474 4920 1.452108 CGGGGAGCTTGCTTAAGGG 60.452 63.158 4.29 0.00 0.00 3.95
3475 4921 1.452108 CCGGGGAGCTTGCTTAAGG 60.452 63.158 4.29 0.00 0.00 2.69
3476 4922 2.115291 GCCGGGGAGCTTGCTTAAG 61.115 63.158 2.18 0.00 0.00 1.85
3477 4923 2.045340 GCCGGGGAGCTTGCTTAA 60.045 61.111 2.18 0.00 0.00 1.85
3478 4924 4.109675 GGCCGGGGAGCTTGCTTA 62.110 66.667 2.18 0.00 0.00 3.09
3486 4932 4.468689 GGTTTCTCGGCCGGGGAG 62.469 72.222 28.04 16.22 0.00 4.30
3490 4936 3.952628 GAGTGGGTTTCTCGGCCGG 62.953 68.421 27.83 16.54 0.00 6.13
3491 4937 2.434359 GAGTGGGTTTCTCGGCCG 60.434 66.667 22.12 22.12 0.00 6.13
3492 4938 2.046217 GGAGTGGGTTTCTCGGCC 60.046 66.667 0.00 0.00 33.26 6.13
3493 4939 2.434359 CGGAGTGGGTTTCTCGGC 60.434 66.667 0.00 0.00 33.26 5.54
3494 4940 2.264794 CCGGAGTGGGTTTCTCGG 59.735 66.667 0.00 0.00 33.26 4.63
3495 4941 2.434359 GCCGGAGTGGGTTTCTCG 60.434 66.667 5.05 0.00 38.63 4.04
3496 4942 2.434359 CGCCGGAGTGGGTTTCTC 60.434 66.667 5.05 0.00 38.63 2.87
3497 4943 4.699522 GCGCCGGAGTGGGTTTCT 62.700 66.667 5.05 0.00 38.63 2.52
3498 4944 4.699522 AGCGCCGGAGTGGGTTTC 62.700 66.667 5.05 0.00 38.63 2.78
3518 4964 3.799755 GTCCGGGTGCGTCAATGC 61.800 66.667 0.00 0.00 0.00 3.56
3519 4965 3.487202 CGTCCGGGTGCGTCAATG 61.487 66.667 0.00 0.00 0.00 2.82
3536 4982 3.645268 AATTCCGGTGAGGCCAGGC 62.645 63.158 5.01 1.26 40.77 4.85
3537 4983 1.452108 GAATTCCGGTGAGGCCAGG 60.452 63.158 5.01 0.00 40.77 4.45
3538 4984 0.035056 AAGAATTCCGGTGAGGCCAG 60.035 55.000 5.01 0.00 40.77 4.85
3539 4985 0.404040 AAAGAATTCCGGTGAGGCCA 59.596 50.000 5.01 0.00 40.77 5.36
3540 4986 2.413310 TAAAGAATTCCGGTGAGGCC 57.587 50.000 0.00 0.00 40.77 5.19
3541 4987 7.094762 CCTTTATATAAAGAATTCCGGTGAGGC 60.095 40.741 29.04 0.00 44.07 4.70
3542 4988 7.094762 GCCTTTATATAAAGAATTCCGGTGAGG 60.095 40.741 29.04 14.20 44.07 3.86
3543 4989 7.360101 CGCCTTTATATAAAGAATTCCGGTGAG 60.360 40.741 29.04 13.37 44.07 3.51
3544 4990 6.425721 CGCCTTTATATAAAGAATTCCGGTGA 59.574 38.462 29.04 0.00 44.07 4.02
3545 4991 6.348213 CCGCCTTTATATAAAGAATTCCGGTG 60.348 42.308 29.04 19.53 44.07 4.94
3546 4992 5.704053 CCGCCTTTATATAAAGAATTCCGGT 59.296 40.000 29.04 0.00 44.07 5.28
3547 4993 5.391629 GCCGCCTTTATATAAAGAATTCCGG 60.392 44.000 29.04 27.05 44.07 5.14
3548 4994 5.391629 GGCCGCCTTTATATAAAGAATTCCG 60.392 44.000 29.04 21.58 44.07 4.30
3549 4995 5.475564 TGGCCGCCTTTATATAAAGAATTCC 59.524 40.000 29.04 23.17 44.07 3.01
3550 4996 6.016610 TGTGGCCGCCTTTATATAAAGAATTC 60.017 38.462 29.04 17.41 44.07 2.17
3551 4997 5.830991 TGTGGCCGCCTTTATATAAAGAATT 59.169 36.000 29.04 0.00 44.07 2.17
3552 4998 5.240844 GTGTGGCCGCCTTTATATAAAGAAT 59.759 40.000 29.04 0.00 44.07 2.40
3553 4999 4.577283 GTGTGGCCGCCTTTATATAAAGAA 59.423 41.667 29.04 10.20 44.07 2.52
3554 5000 4.131596 GTGTGGCCGCCTTTATATAAAGA 58.868 43.478 29.04 11.15 44.07 2.52
3555 5001 3.252458 GGTGTGGCCGCCTTTATATAAAG 59.748 47.826 23.09 23.09 41.70 1.85
3556 5002 3.215975 GGTGTGGCCGCCTTTATATAAA 58.784 45.455 15.15 7.66 38.28 1.40
3557 5003 2.487625 GGGTGTGGCCGCCTTTATATAA 60.488 50.000 15.15 0.00 41.26 0.98
3558 5004 1.072648 GGGTGTGGCCGCCTTTATATA 59.927 52.381 15.15 0.00 41.26 0.86
3559 5005 0.179001 GGGTGTGGCCGCCTTTATAT 60.179 55.000 15.15 0.00 41.26 0.86
3560 5006 1.225148 GGGTGTGGCCGCCTTTATA 59.775 57.895 15.15 0.00 41.26 0.98
3561 5007 2.044352 GGGTGTGGCCGCCTTTAT 60.044 61.111 15.15 0.00 41.26 1.40
3562 5008 4.708386 CGGGTGTGGCCGCCTTTA 62.708 66.667 15.15 0.00 41.26 1.85
3571 5017 2.267961 GGAGTTAGCCGGGTGTGG 59.732 66.667 18.40 0.00 0.00 4.17
3572 5018 1.375523 GTGGAGTTAGCCGGGTGTG 60.376 63.158 18.40 0.00 0.00 3.82
3573 5019 1.839747 TGTGGAGTTAGCCGGGTGT 60.840 57.895 18.40 0.00 0.00 4.16
3574 5020 1.375523 GTGTGGAGTTAGCCGGGTG 60.376 63.158 18.40 0.00 0.00 4.61
3575 5021 1.839747 TGTGTGGAGTTAGCCGGGT 60.840 57.895 12.58 12.58 0.00 5.28
3576 5022 1.375523 GTGTGTGGAGTTAGCCGGG 60.376 63.158 2.18 0.00 0.00 5.73
3577 5023 0.892755 TAGTGTGTGGAGTTAGCCGG 59.107 55.000 0.00 0.00 0.00 6.13
3578 5024 1.544691 AGTAGTGTGTGGAGTTAGCCG 59.455 52.381 0.00 0.00 0.00 5.52
3579 5025 4.015084 TCTAGTAGTGTGTGGAGTTAGCC 58.985 47.826 0.00 0.00 0.00 3.93
3580 5026 5.640189 TTCTAGTAGTGTGTGGAGTTAGC 57.360 43.478 0.00 0.00 0.00 3.09
3581 5027 7.431249 TGTTTTCTAGTAGTGTGTGGAGTTAG 58.569 38.462 0.00 0.00 0.00 2.34
3582 5028 7.350744 TGTTTTCTAGTAGTGTGTGGAGTTA 57.649 36.000 0.00 0.00 0.00 2.24
3583 5029 6.229936 TGTTTTCTAGTAGTGTGTGGAGTT 57.770 37.500 0.00 0.00 0.00 3.01
3584 5030 5.221461 CCTGTTTTCTAGTAGTGTGTGGAGT 60.221 44.000 0.00 0.00 0.00 3.85
3585 5031 5.230942 CCTGTTTTCTAGTAGTGTGTGGAG 58.769 45.833 0.00 0.00 0.00 3.86
3586 5032 4.502604 GCCTGTTTTCTAGTAGTGTGTGGA 60.503 45.833 0.00 0.00 0.00 4.02
3587 5033 3.746492 GCCTGTTTTCTAGTAGTGTGTGG 59.254 47.826 0.00 0.00 0.00 4.17
3588 5034 4.632153 AGCCTGTTTTCTAGTAGTGTGTG 58.368 43.478 0.00 0.00 0.00 3.82
3589 5035 4.957684 AGCCTGTTTTCTAGTAGTGTGT 57.042 40.909 0.00 0.00 0.00 3.72
3590 5036 7.097192 TCAATAGCCTGTTTTCTAGTAGTGTG 58.903 38.462 0.00 0.00 0.00 3.82
3591 5037 7.241042 TCAATAGCCTGTTTTCTAGTAGTGT 57.759 36.000 0.00 0.00 0.00 3.55
3592 5038 9.817809 TTATCAATAGCCTGTTTTCTAGTAGTG 57.182 33.333 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.