Multiple sequence alignment - TraesCS3A01G438200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G438200 chr3A 100.000 2192 0 0 1 2192 681451819 681449628 0.000000e+00 4048.0
1 TraesCS3A01G438200 chr3A 94.118 238 14 0 1411 1648 495078391 495078628 1.600000e-96 363.0
2 TraesCS3A01G438200 chr3A 94.400 125 5 2 1929 2051 697840699 697840823 7.990000e-45 191.0
3 TraesCS3A01G438200 chr3D 86.803 735 57 14 591 1304 544779200 544778485 0.000000e+00 784.0
4 TraesCS3A01G438200 chr3D 91.878 394 23 4 214 599 544779855 544779463 1.910000e-150 542.0
5 TraesCS3A01G438200 chr3D 92.823 209 11 2 392 599 544780255 544780050 1.270000e-77 300.0
6 TraesCS3A01G438200 chr3D 88.000 100 9 3 1646 1744 544774624 544774527 4.950000e-22 115.0
7 TraesCS3A01G438200 chr3B 85.338 532 47 6 902 1410 720269600 720269077 2.490000e-144 521.0
8 TraesCS3A01G438200 chr3B 85.682 447 40 15 1746 2192 720268568 720268146 1.190000e-122 449.0
9 TraesCS3A01G438200 chr3B 85.347 389 30 11 218 582 720680463 720680078 5.710000e-101 377.0
10 TraesCS3A01G438200 chr3B 93.469 245 16 0 499 743 720680081 720679837 4.450000e-97 364.0
11 TraesCS3A01G438200 chr3B 88.824 170 16 2 735 904 720678695 720678529 2.850000e-49 206.0
12 TraesCS3A01G438200 chr3B 97.802 91 2 0 1647 1737 720268861 720268771 8.100000e-35 158.0
13 TraesCS3A01G438200 chr3B 98.113 53 1 0 1647 1699 720269084 720269032 2.320000e-15 93.5
14 TraesCS3A01G438200 chr5A 96.484 256 7 2 1411 1665 521679495 521679241 2.600000e-114 422.0
15 TraesCS3A01G438200 chr5A 91.150 226 18 1 1 226 513231261 513231038 2.730000e-79 305.0
16 TraesCS3A01G438200 chr5A 93.893 131 5 3 1927 2057 547790017 547790144 6.170000e-46 195.0
17 TraesCS3A01G438200 chr5A 95.082 122 4 2 1925 2045 375844363 375844483 7.990000e-45 191.0
18 TraesCS3A01G438200 chr5A 78.221 326 50 14 633 945 616498986 616498669 2.870000e-44 189.0
19 TraesCS3A01G438200 chr4D 95.021 241 10 2 1410 1649 50420127 50419888 5.710000e-101 377.0
20 TraesCS3A01G438200 chr7D 94.958 238 12 0 1410 1647 549404748 549404511 7.390000e-100 374.0
21 TraesCS3A01G438200 chr7D 97.391 115 3 0 1924 2038 615266721 615266607 1.720000e-46 196.0
22 TraesCS3A01G438200 chr7D 97.222 108 3 0 1928 2035 379324238 379324131 1.340000e-42 183.0
23 TraesCS3A01G438200 chr7D 96.875 32 1 0 2151 2182 581080466 581080435 1.000000e-03 54.7
24 TraesCS3A01G438200 chr6A 94.492 236 13 0 1411 1646 604896930 604896695 4.450000e-97 364.0
25 TraesCS3A01G438200 chr2A 94.167 240 13 1 1412 1650 723143307 723143068 4.450000e-97 364.0
26 TraesCS3A01G438200 chr2A 74.963 667 81 43 618 1209 611296809 611296154 6.090000e-56 228.0
27 TraesCS3A01G438200 chr2A 97.059 34 1 0 2151 2184 166083737 166083770 8.450000e-05 58.4
28 TraesCS3A01G438200 chrUn 94.118 238 13 1 1410 1646 11858731 11858494 5.750000e-96 361.0
29 TraesCS3A01G438200 chr7B 94.093 237 14 0 1411 1647 641091469 641091233 5.750000e-96 361.0
30 TraesCS3A01G438200 chr7B 92.488 213 16 0 1 213 17914623 17914835 2.730000e-79 305.0
31 TraesCS3A01G438200 chr7B 92.488 213 16 0 1 213 146214857 146215069 2.730000e-79 305.0
32 TraesCS3A01G438200 chr7B 92.488 213 16 0 1 213 383836447 383836235 2.730000e-79 305.0
33 TraesCS3A01G438200 chr1D 94.093 237 14 0 1410 1646 416111326 416111562 5.750000e-96 361.0
34 TraesCS3A01G438200 chr1D 91.441 222 18 1 2 222 41571318 41571539 9.830000e-79 303.0
35 TraesCS3A01G438200 chr1D 95.082 122 4 2 1915 2035 247521078 247520958 7.990000e-45 191.0
36 TraesCS3A01G438200 chr1D 75.113 221 24 18 1017 1210 6913373 6913157 8.390000e-10 75.0
37 TraesCS3A01G438200 chr5B 92.958 213 14 1 1 213 227881819 227881608 2.110000e-80 309.0
38 TraesCS3A01G438200 chr5B 77.607 326 52 14 633 945 609095319 609095002 6.220000e-41 178.0
39 TraesCS3A01G438200 chr2B 92.488 213 16 0 1 213 379013795 379014007 2.730000e-79 305.0
40 TraesCS3A01G438200 chr2B 74.554 617 78 42 618 1172 548610162 548609563 1.720000e-46 196.0
41 TraesCS3A01G438200 chr1B 92.488 213 16 0 1 213 184241363 184241151 2.730000e-79 305.0
42 TraesCS3A01G438200 chr1B 92.488 213 16 0 1 213 487800987 487801199 2.730000e-79 305.0
43 TraesCS3A01G438200 chr1B 98.230 113 2 0 1926 2038 687253940 687254052 4.770000e-47 198.0
44 TraesCS3A01G438200 chr1B 76.214 206 23 13 1028 1210 8819725 8819927 3.880000e-13 86.1
45 TraesCS3A01G438200 chr2D 74.811 663 81 43 618 1205 469984689 469984038 1.020000e-53 220.0
46 TraesCS3A01G438200 chr6D 95.082 122 4 2 1919 2039 435974464 435974344 7.990000e-45 191.0
47 TraesCS3A01G438200 chr5D 78.221 326 50 14 633 945 493342391 493342074 2.870000e-44 189.0
48 TraesCS3A01G438200 chr1A 93.077 130 5 4 1925 2052 587610294 587610167 1.030000e-43 187.0
49 TraesCS3A01G438200 chr1A 77.670 206 20 13 1028 1210 8332147 8331945 3.850000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G438200 chr3A 681449628 681451819 2191 True 4048.000000 4048 100.000000 1 2192 1 chr3A.!!$R1 2191
1 TraesCS3A01G438200 chr3D 544774527 544780255 5728 True 435.250000 784 89.876000 214 1744 4 chr3D.!!$R1 1530
2 TraesCS3A01G438200 chr3B 720678529 720680463 1934 True 315.666667 377 89.213333 218 904 3 chr3B.!!$R2 686
3 TraesCS3A01G438200 chr3B 720268146 720269600 1454 True 305.375000 521 91.733750 902 2192 4 chr3B.!!$R1 1290
4 TraesCS3A01G438200 chr2A 611296154 611296809 655 True 228.000000 228 74.963000 618 1209 1 chr2A.!!$R1 591
5 TraesCS3A01G438200 chr2D 469984038 469984689 651 True 220.000000 220 74.811000 618 1205 1 chr2D.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.040499 AAGCTTCTCGTCCTCTCCCT 59.96 55.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 3030 0.537143 ATCCAGCGTGCTTCAACCAA 60.537 50.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.887987 GCTCTCGCCGCAGCAGAT 62.888 66.667 3.34 0.00 39.83 2.90
30 31 3.136345 CTCTCGCCGCAGCAGATCT 62.136 63.158 0.00 0.00 39.83 2.75
31 32 2.657944 CTCGCCGCAGCAGATCTC 60.658 66.667 0.00 0.00 39.83 2.75
32 33 3.136345 CTCGCCGCAGCAGATCTCT 62.136 63.158 0.00 0.00 39.83 3.10
33 34 2.657944 CGCCGCAGCAGATCTCTC 60.658 66.667 0.00 0.00 39.83 3.20
34 35 2.280052 GCCGCAGCAGATCTCTCC 60.280 66.667 0.00 0.00 39.53 3.71
35 36 2.420890 CCGCAGCAGATCTCTCCC 59.579 66.667 0.00 0.00 0.00 4.30
36 37 2.420890 CGCAGCAGATCTCTCCCC 59.579 66.667 0.00 0.00 0.00 4.81
37 38 2.429767 CGCAGCAGATCTCTCCCCA 61.430 63.158 0.00 0.00 0.00 4.96
39 40 1.336632 GCAGCAGATCTCTCCCCACT 61.337 60.000 0.00 0.00 0.00 4.00
40 41 1.202330 CAGCAGATCTCTCCCCACTT 58.798 55.000 0.00 0.00 0.00 3.16
42 43 0.463474 GCAGATCTCTCCCCACTTGC 60.463 60.000 0.00 0.00 0.00 4.01
43 44 1.202330 CAGATCTCTCCCCACTTGCT 58.798 55.000 0.00 0.00 0.00 3.91
44 45 1.138661 CAGATCTCTCCCCACTTGCTC 59.861 57.143 0.00 0.00 0.00 4.26
45 46 0.103937 GATCTCTCCCCACTTGCTCG 59.896 60.000 0.00 0.00 0.00 5.03
46 47 0.324738 ATCTCTCCCCACTTGCTCGA 60.325 55.000 0.00 0.00 0.00 4.04
48 49 0.108424 CTCTCCCCACTTGCTCGAAG 60.108 60.000 0.00 0.00 37.73 3.79
50 51 2.177594 CTCCCCACTTGCTCGAAGCT 62.178 60.000 8.07 0.00 42.97 3.74
51 52 1.302832 CCCCACTTGCTCGAAGCTT 60.303 57.895 0.00 0.00 42.97 3.74
53 54 0.321122 CCCACTTGCTCGAAGCTTCT 60.321 55.000 23.50 0.37 42.97 2.85
55 56 0.712775 CACTTGCTCGAAGCTTCTCG 59.287 55.000 23.50 13.05 42.97 4.04
56 57 0.315568 ACTTGCTCGAAGCTTCTCGT 59.684 50.000 23.50 8.68 42.97 4.18
57 58 0.988439 CTTGCTCGAAGCTTCTCGTC 59.012 55.000 23.50 10.61 42.97 4.20
59 60 1.244697 TGCTCGAAGCTTCTCGTCCT 61.245 55.000 23.50 0.00 42.97 3.85
61 62 1.091537 CTCGAAGCTTCTCGTCCTCT 58.908 55.000 23.50 0.00 39.84 3.69
62 63 1.063469 CTCGAAGCTTCTCGTCCTCTC 59.937 57.143 23.50 0.00 39.84 3.20
63 64 0.099791 CGAAGCTTCTCGTCCTCTCC 59.900 60.000 23.50 0.00 34.08 3.71
64 65 0.458260 GAAGCTTCTCGTCCTCTCCC 59.542 60.000 19.44 0.00 0.00 4.30
65 66 0.040499 AAGCTTCTCGTCCTCTCCCT 59.960 55.000 0.00 0.00 0.00 4.20
66 67 0.395173 AGCTTCTCGTCCTCTCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
68 69 0.753848 CTTCTCGTCCTCTCCCTCCC 60.754 65.000 0.00 0.00 0.00 4.30
69 70 1.215679 TTCTCGTCCTCTCCCTCCCT 61.216 60.000 0.00 0.00 0.00 4.20
70 71 1.152839 CTCGTCCTCTCCCTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
71 72 1.619975 TCGTCCTCTCCCTCCCTCT 60.620 63.158 0.00 0.00 0.00 3.69
73 74 1.641552 CGTCCTCTCCCTCCCTCTCT 61.642 65.000 0.00 0.00 0.00 3.10
74 75 0.185175 GTCCTCTCCCTCCCTCTCTC 59.815 65.000 0.00 0.00 0.00 3.20
75 76 0.047176 TCCTCTCCCTCCCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
76 77 0.478507 CCTCTCCCTCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
77 78 1.221635 CTCTCCCTCCCTCTCTCTCA 58.778 60.000 0.00 0.00 0.00 3.27
78 79 0.923358 TCTCCCTCCCTCTCTCTCAC 59.077 60.000 0.00 0.00 0.00 3.51
79 80 0.628522 CTCCCTCCCTCTCTCTCACA 59.371 60.000 0.00 0.00 0.00 3.58
80 81 0.333312 TCCCTCCCTCTCTCTCACAC 59.667 60.000 0.00 0.00 0.00 3.82
83 84 0.322997 CTCCCTCTCTCTCACACCGT 60.323 60.000 0.00 0.00 0.00 4.83
84 85 0.322636 TCCCTCTCTCTCACACCGTC 60.323 60.000 0.00 0.00 0.00 4.79
85 86 1.316706 CCCTCTCTCTCACACCGTCC 61.317 65.000 0.00 0.00 0.00 4.79
87 88 0.956410 CTCTCTCTCACACCGTCCGT 60.956 60.000 0.00 0.00 0.00 4.69
89 90 1.228033 TCTCTCACACCGTCCGTGA 60.228 57.895 0.00 0.00 46.20 4.35
90 91 0.608308 TCTCTCACACCGTCCGTGAT 60.608 55.000 0.00 0.00 46.20 3.06
91 92 0.456824 CTCTCACACCGTCCGTGATG 60.457 60.000 0.00 0.00 46.20 3.07
98 99 2.509336 CGTCCGTGATGGTGCCTC 60.509 66.667 0.00 0.00 39.52 4.70
99 100 2.509336 GTCCGTGATGGTGCCTCG 60.509 66.667 0.00 0.00 39.52 4.63
103 104 4.760047 GTGATGGTGCCTCGCCGT 62.760 66.667 0.00 0.00 36.72 5.68
104 105 3.071837 TGATGGTGCCTCGCCGTA 61.072 61.111 0.00 0.00 36.72 4.02
105 106 2.421739 GATGGTGCCTCGCCGTAT 59.578 61.111 0.00 0.00 36.72 3.06
106 107 1.664965 GATGGTGCCTCGCCGTATC 60.665 63.158 0.00 0.00 36.72 2.24
107 108 3.165160 ATGGTGCCTCGCCGTATCC 62.165 63.158 0.00 0.00 36.72 2.59
108 109 3.845259 GGTGCCTCGCCGTATCCA 61.845 66.667 0.00 0.00 0.00 3.41
109 110 2.585247 GTGCCTCGCCGTATCCAC 60.585 66.667 0.00 0.00 0.00 4.02
121 122 2.662700 CGTATCCACGCTCCATCTAAC 58.337 52.381 0.00 0.00 42.05 2.34
124 125 2.145397 TCCACGCTCCATCTAACTCT 57.855 50.000 0.00 0.00 0.00 3.24
125 126 1.751351 TCCACGCTCCATCTAACTCTG 59.249 52.381 0.00 0.00 0.00 3.35
126 127 1.565305 CACGCTCCATCTAACTCTGC 58.435 55.000 0.00 0.00 0.00 4.26
128 129 0.461548 CGCTCCATCTAACTCTGCCA 59.538 55.000 0.00 0.00 0.00 4.92
129 130 1.069823 CGCTCCATCTAACTCTGCCAT 59.930 52.381 0.00 0.00 0.00 4.40
130 131 2.765122 GCTCCATCTAACTCTGCCATC 58.235 52.381 0.00 0.00 0.00 3.51
131 132 2.549778 GCTCCATCTAACTCTGCCATCC 60.550 54.545 0.00 0.00 0.00 3.51
132 133 2.702478 CTCCATCTAACTCTGCCATCCA 59.298 50.000 0.00 0.00 0.00 3.41
133 134 3.114606 TCCATCTAACTCTGCCATCCAA 58.885 45.455 0.00 0.00 0.00 3.53
134 135 3.523157 TCCATCTAACTCTGCCATCCAAA 59.477 43.478 0.00 0.00 0.00 3.28
135 136 3.629398 CCATCTAACTCTGCCATCCAAAC 59.371 47.826 0.00 0.00 0.00 2.93
136 137 4.264253 CATCTAACTCTGCCATCCAAACA 58.736 43.478 0.00 0.00 0.00 2.83
137 138 3.674997 TCTAACTCTGCCATCCAAACAC 58.325 45.455 0.00 0.00 0.00 3.32
140 141 1.271597 ACTCTGCCATCCAAACACCTC 60.272 52.381 0.00 0.00 0.00 3.85
141 142 1.004044 CTCTGCCATCCAAACACCTCT 59.996 52.381 0.00 0.00 0.00 3.69
143 144 2.642311 TCTGCCATCCAAACACCTCTTA 59.358 45.455 0.00 0.00 0.00 2.10
144 145 3.012518 CTGCCATCCAAACACCTCTTAG 58.987 50.000 0.00 0.00 0.00 2.18
145 146 2.290896 TGCCATCCAAACACCTCTTAGG 60.291 50.000 0.00 0.00 42.49 2.69
146 147 2.369394 CCATCCAAACACCTCTTAGGC 58.631 52.381 0.00 0.00 39.63 3.93
147 148 2.025887 CCATCCAAACACCTCTTAGGCT 60.026 50.000 0.00 0.00 39.63 4.58
150 151 1.351017 CCAAACACCTCTTAGGCTGGA 59.649 52.381 0.00 0.00 39.63 3.86
151 152 2.616510 CCAAACACCTCTTAGGCTGGAG 60.617 54.545 0.00 4.78 39.63 3.86
152 153 2.031495 AACACCTCTTAGGCTGGAGT 57.969 50.000 14.91 2.96 39.63 3.85
153 154 2.031495 ACACCTCTTAGGCTGGAGTT 57.969 50.000 14.91 2.16 39.63 3.01
155 156 3.100671 ACACCTCTTAGGCTGGAGTTAG 58.899 50.000 14.91 8.78 39.63 2.34
156 157 3.100671 CACCTCTTAGGCTGGAGTTAGT 58.899 50.000 14.91 6.35 39.63 2.24
157 158 3.515901 CACCTCTTAGGCTGGAGTTAGTT 59.484 47.826 14.91 0.00 39.63 2.24
158 159 3.770388 ACCTCTTAGGCTGGAGTTAGTTC 59.230 47.826 14.91 0.00 39.63 3.01
159 160 3.769844 CCTCTTAGGCTGGAGTTAGTTCA 59.230 47.826 14.91 0.00 0.00 3.18
160 161 4.142049 CCTCTTAGGCTGGAGTTAGTTCAG 60.142 50.000 14.91 0.00 0.00 3.02
161 162 3.769844 TCTTAGGCTGGAGTTAGTTCAGG 59.230 47.826 0.00 0.00 0.00 3.86
162 163 1.280457 AGGCTGGAGTTAGTTCAGGG 58.720 55.000 0.00 0.00 0.00 4.45
163 164 0.984995 GGCTGGAGTTAGTTCAGGGT 59.015 55.000 0.00 0.00 0.00 4.34
164 165 1.351350 GGCTGGAGTTAGTTCAGGGTT 59.649 52.381 0.00 0.00 0.00 4.11
165 166 2.570302 GGCTGGAGTTAGTTCAGGGTTA 59.430 50.000 0.00 0.00 0.00 2.85
166 167 3.369576 GGCTGGAGTTAGTTCAGGGTTAG 60.370 52.174 0.00 0.00 0.00 2.34
167 168 3.514309 GCTGGAGTTAGTTCAGGGTTAGA 59.486 47.826 0.00 0.00 0.00 2.10
169 170 5.338463 GCTGGAGTTAGTTCAGGGTTAGAAT 60.338 44.000 0.00 0.00 0.00 2.40
170 171 6.295719 TGGAGTTAGTTCAGGGTTAGAATC 57.704 41.667 0.00 0.00 0.00 2.52
171 172 6.023603 TGGAGTTAGTTCAGGGTTAGAATCT 58.976 40.000 0.00 0.00 0.00 2.40
172 173 7.186972 TGGAGTTAGTTCAGGGTTAGAATCTA 58.813 38.462 0.00 0.00 0.00 1.98
173 174 7.676893 TGGAGTTAGTTCAGGGTTAGAATCTAA 59.323 37.037 0.00 0.00 0.00 2.10
174 175 7.980662 GGAGTTAGTTCAGGGTTAGAATCTAAC 59.019 40.741 21.48 21.48 38.34 2.34
175 176 8.667592 AGTTAGTTCAGGGTTAGAATCTAACT 57.332 34.615 26.42 13.45 40.32 2.24
177 178 8.751242 GTTAGTTCAGGGTTAGAATCTAACTCT 58.249 37.037 25.42 25.42 38.68 3.24
178 179 9.986157 TTAGTTCAGGGTTAGAATCTAACTCTA 57.014 33.333 28.99 16.07 36.19 2.43
179 180 8.896722 AGTTCAGGGTTAGAATCTAACTCTAA 57.103 34.615 28.99 17.07 36.19 2.10
187 188 8.929827 GTTAGAATCTAACTCTAACCTCCAAC 57.070 38.462 22.10 0.00 44.97 3.77
189 190 7.176589 AGAATCTAACTCTAACCTCCAACTG 57.823 40.000 0.00 0.00 0.00 3.16
190 191 6.954684 AGAATCTAACTCTAACCTCCAACTGA 59.045 38.462 0.00 0.00 0.00 3.41
191 192 6.783708 ATCTAACTCTAACCTCCAACTGAG 57.216 41.667 0.00 0.00 41.07 3.35
192 193 5.642165 TCTAACTCTAACCTCCAACTGAGT 58.358 41.667 0.00 0.00 39.65 3.41
193 194 6.075984 TCTAACTCTAACCTCCAACTGAGTT 58.924 40.000 10.35 10.35 43.96 3.01
194 195 7.236529 TCTAACTCTAACCTCCAACTGAGTTA 58.763 38.462 0.00 11.29 42.41 2.24
195 196 5.986501 ACTCTAACCTCCAACTGAGTTAG 57.013 43.478 0.00 0.00 39.65 2.34
197 198 6.202516 CTCTAACCTCCAACTGAGTTAGAG 57.797 45.833 18.89 18.89 44.29 2.43
198 199 5.642165 TCTAACCTCCAACTGAGTTAGAGT 58.358 41.667 17.25 4.94 37.99 3.24
199 200 6.787170 TCTAACCTCCAACTGAGTTAGAGTA 58.213 40.000 17.25 5.73 37.99 2.59
200 201 7.411808 TCTAACCTCCAACTGAGTTAGAGTAT 58.588 38.462 17.25 9.48 37.99 2.12
201 202 6.532988 AACCTCCAACTGAGTTAGAGTATC 57.467 41.667 17.25 0.00 39.65 2.24
202 203 4.957327 ACCTCCAACTGAGTTAGAGTATCC 59.043 45.833 17.25 0.00 39.65 2.59
203 204 4.956700 CCTCCAACTGAGTTAGAGTATCCA 59.043 45.833 17.25 0.00 39.65 3.41
204 205 5.422331 CCTCCAACTGAGTTAGAGTATCCAA 59.578 44.000 17.25 0.00 39.65 3.53
206 207 6.698380 TCCAACTGAGTTAGAGTATCCAAAC 58.302 40.000 0.00 0.00 33.66 2.93
207 208 6.269077 TCCAACTGAGTTAGAGTATCCAAACA 59.731 38.462 0.00 0.00 34.84 2.83
208 209 6.591834 CCAACTGAGTTAGAGTATCCAAACAG 59.408 42.308 0.00 0.00 34.84 3.16
209 210 6.287589 ACTGAGTTAGAGTATCCAAACAGG 57.712 41.667 0.00 0.00 34.84 4.00
211 212 4.081087 TGAGTTAGAGTATCCAAACAGGGC 60.081 45.833 0.00 0.00 34.84 5.19
212 213 3.200165 AGTTAGAGTATCCAAACAGGGCC 59.800 47.826 0.00 0.00 34.84 5.80
213 214 0.541863 AGAGTATCCAAACAGGGCCG 59.458 55.000 0.00 0.00 38.24 6.13
215 216 0.696501 AGTATCCAAACAGGGCCGTT 59.303 50.000 0.00 7.75 38.24 4.44
216 217 0.808755 GTATCCAAACAGGGCCGTTG 59.191 55.000 13.13 11.42 38.24 4.10
406 603 3.003763 GACGTCAGGCCTCCCCTT 61.004 66.667 11.55 0.00 43.06 3.95
419 616 1.916181 CTCCCCTTTGTCTACCATGGT 59.084 52.381 23.55 23.55 0.00 3.55
560 849 1.745489 GCCCCAAGCACCTAACTCG 60.745 63.158 0.00 0.00 42.97 4.18
778 2488 4.395854 TGCCACAACAATATGTCAGATGAC 59.604 41.667 6.01 6.01 44.97 3.06
801 2522 0.909610 CTCCCTGTGAGGCCAAGGTA 60.910 60.000 5.01 0.00 37.45 3.08
885 2618 1.012486 GTGGACCAAAGCTACGGACG 61.012 60.000 8.29 0.00 0.00 4.79
925 2658 2.226200 CGATGACAAGTTTGCCATCACA 59.774 45.455 17.40 0.00 44.93 3.58
938 2671 3.199289 TGCCATCACATGAGATCTTGAGT 59.801 43.478 0.00 0.00 0.00 3.41
966 2726 2.436646 GGTCTGTGATGGGCCACG 60.437 66.667 9.28 0.00 39.80 4.94
986 2746 2.228822 CGCAGCAGTAAAAACTGGGATT 59.771 45.455 7.57 0.00 44.55 3.01
992 2752 6.200854 CAGCAGTAAAAACTGGGATTTTTGTC 59.799 38.462 7.57 1.40 40.94 3.18
1012 2772 1.864711 CGAACCATATGCCAAGGTACG 59.135 52.381 0.00 0.00 34.63 3.67
1070 2846 3.251043 GAAGAAGCCGAGCGCGAG 61.251 66.667 12.10 2.33 44.76 5.03
1092 2868 2.099141 TGCCGTTTCTTGAGATGAGG 57.901 50.000 0.00 0.00 0.00 3.86
1122 2898 4.400961 GCGAGCACTTGGCCTCCT 62.401 66.667 3.32 0.00 46.50 3.69
1134 2910 3.398318 TGGCCTCCTGTAAGAGTATCA 57.602 47.619 3.32 0.00 37.82 2.15
1160 2936 1.153005 CAGAGGAGCATGAAGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
1175 2966 1.302511 GGGCGTGCAAGAGGAGAAA 60.303 57.895 2.99 0.00 0.00 2.52
1181 2972 0.762418 TGCAAGAGGAGAAACCCGAA 59.238 50.000 0.00 0.00 40.05 4.30
1194 2988 6.295719 AGAAACCCGAACAATATGTAGAGT 57.704 37.500 0.00 0.00 0.00 3.24
1218 3012 1.068127 GGCATGGATGAATGAGTTGGC 59.932 52.381 0.00 0.00 0.00 4.52
1219 3013 2.029623 GCATGGATGAATGAGTTGGCT 58.970 47.619 0.00 0.00 0.00 4.75
1236 3030 3.995636 TGGCTAAGAGAGGAAGTATGGT 58.004 45.455 0.00 0.00 0.00 3.55
1259 3053 0.955428 TTGAAGCACGCTGGATGGAC 60.955 55.000 0.00 0.00 0.00 4.02
1286 3085 3.317711 GCTCTGCTCTGCTCTTCTATACA 59.682 47.826 0.00 0.00 0.00 2.29
1287 3086 4.022068 GCTCTGCTCTGCTCTTCTATACAT 60.022 45.833 0.00 0.00 0.00 2.29
1320 6830 9.620259 AAGAAGAGGATTAGAATGGACAATTAC 57.380 33.333 0.00 0.00 0.00 1.89
1371 6881 2.370718 AGCTGACTGACAGGGAAGG 58.629 57.895 7.51 0.00 45.82 3.46
1401 6916 7.056635 TGGGATCTAGAAAATTCAGATTGGTC 58.943 38.462 0.00 0.00 30.60 4.02
1422 6937 6.056428 GTCGTTAAGACCTGTGTTTTGATT 57.944 37.500 0.00 0.00 43.95 2.57
1424 6939 6.970613 GTCGTTAAGACCTGTGTTTTGATTTT 59.029 34.615 0.00 0.00 43.95 1.82
1426 6941 6.140108 CGTTAAGACCTGTGTTTTGATTTTCG 59.860 38.462 0.00 0.00 0.00 3.46
1427 6942 4.568152 AGACCTGTGTTTTGATTTTCGG 57.432 40.909 0.00 0.00 0.00 4.30
1428 6943 3.951680 AGACCTGTGTTTTGATTTTCGGT 59.048 39.130 0.00 0.00 0.00 4.69
1429 6944 4.401202 AGACCTGTGTTTTGATTTTCGGTT 59.599 37.500 0.00 0.00 0.00 4.44
1431 6946 5.106442 ACCTGTGTTTTGATTTTCGGTTTC 58.894 37.500 0.00 0.00 0.00 2.78
1432 6947 5.105752 CCTGTGTTTTGATTTTCGGTTTCA 58.894 37.500 0.00 0.00 0.00 2.69
1433 6948 5.231991 CCTGTGTTTTGATTTTCGGTTTCAG 59.768 40.000 0.00 0.00 0.00 3.02
1434 6949 4.564769 TGTGTTTTGATTTTCGGTTTCAGC 59.435 37.500 0.00 0.00 0.00 4.26
1435 6950 4.803613 GTGTTTTGATTTTCGGTTTCAGCT 59.196 37.500 0.00 0.00 0.00 4.24
1437 6952 5.872070 TGTTTTGATTTTCGGTTTCAGCTTT 59.128 32.000 0.00 0.00 0.00 3.51
1438 6953 6.370166 TGTTTTGATTTTCGGTTTCAGCTTTT 59.630 30.769 0.00 0.00 0.00 2.27
1439 6954 6.976636 TTTGATTTTCGGTTTCAGCTTTTT 57.023 29.167 0.00 0.00 0.00 1.94
1455 6970 3.826637 TTTTTCGCCCTAGACCGAG 57.173 52.632 0.00 0.00 34.68 4.63
1456 6971 1.259609 TTTTTCGCCCTAGACCGAGA 58.740 50.000 0.00 0.00 34.68 4.04
1457 6972 1.481871 TTTTCGCCCTAGACCGAGAT 58.518 50.000 0.00 0.00 34.68 2.75
1458 6973 0.744874 TTTCGCCCTAGACCGAGATG 59.255 55.000 0.00 0.00 34.68 2.90
1459 6974 1.107538 TTCGCCCTAGACCGAGATGG 61.108 60.000 0.00 0.00 46.41 3.51
1460 6975 2.737830 GCCCTAGACCGAGATGGC 59.262 66.667 0.00 0.00 43.94 4.40
1462 6977 2.565645 CCCTAGACCGAGATGGCCG 61.566 68.421 0.00 0.00 43.94 6.13
1463 6978 1.528542 CCTAGACCGAGATGGCCGA 60.529 63.158 0.00 0.00 43.94 5.54
1464 6979 1.107538 CCTAGACCGAGATGGCCGAA 61.108 60.000 0.00 0.00 43.94 4.30
1466 6981 1.341531 CTAGACCGAGATGGCCGAATT 59.658 52.381 0.00 0.00 43.94 2.17
1467 6982 0.541863 AGACCGAGATGGCCGAATTT 59.458 50.000 0.00 0.00 43.94 1.82
1468 6983 0.938008 GACCGAGATGGCCGAATTTC 59.062 55.000 0.00 0.00 43.94 2.17
1469 6984 0.810031 ACCGAGATGGCCGAATTTCG 60.810 55.000 11.81 11.81 43.94 3.46
1487 7002 9.885743 CGAATTTCGGTCATATTCAAAAATTTC 57.114 29.630 10.95 0.00 36.00 2.17
1488 7003 9.885743 GAATTTCGGTCATATTCAAAAATTTCG 57.114 29.630 0.00 0.00 0.00 3.46
1490 7005 5.336744 TCGGTCATATTCAAAAATTTCGGC 58.663 37.500 0.00 0.00 0.00 5.54
1492 7007 5.229887 CGGTCATATTCAAAAATTTCGGCTG 59.770 40.000 0.00 0.00 0.00 4.85
1536 7051 9.255304 GACTGCAATTTAACTTAAATTTGACCA 57.745 29.630 14.37 9.71 43.71 4.02
1562 7077 8.770850 AATTTTGTCAAATTTGAGCAATTTCG 57.229 26.923 21.05 0.00 42.28 3.46
1563 7078 5.903764 TTGTCAAATTTGAGCAATTTCGG 57.096 34.783 21.05 0.00 42.28 4.30
1565 7080 4.981674 TGTCAAATTTGAGCAATTTCGGTC 59.018 37.500 21.05 5.70 42.28 4.79
1567 7082 6.016693 TGTCAAATTTGAGCAATTTCGGTCTA 60.017 34.615 21.05 0.00 42.28 2.59
1568 7083 6.861055 GTCAAATTTGAGCAATTTCGGTCTAA 59.139 34.615 21.05 0.00 42.28 2.10
1569 7084 7.381139 GTCAAATTTGAGCAATTTCGGTCTAAA 59.619 33.333 21.05 0.00 42.28 1.85
1570 7085 8.087750 TCAAATTTGAGCAATTTCGGTCTAAAT 58.912 29.630 16.91 0.00 42.28 1.40
1571 7086 9.352784 CAAATTTGAGCAATTTCGGTCTAAATA 57.647 29.630 13.08 0.00 42.28 1.40
1575 7090 8.958119 TTGAGCAATTTCGGTCTAAATATACT 57.042 30.769 0.00 0.00 34.46 2.12
1576 7091 8.958119 TGAGCAATTTCGGTCTAAATATACTT 57.042 30.769 0.00 0.00 34.46 2.24
1577 7092 9.391006 TGAGCAATTTCGGTCTAAATATACTTT 57.609 29.630 0.00 0.00 34.46 2.66
1580 7095 9.155053 GCAATTTCGGTCTAAATATACTTTTCG 57.845 33.333 0.00 0.00 0.00 3.46
1581 7096 9.155053 CAATTTCGGTCTAAATATACTTTTCGC 57.845 33.333 0.00 0.00 0.00 4.70
1582 7097 6.833342 TTCGGTCTAAATATACTTTTCGCC 57.167 37.500 0.00 0.00 0.00 5.54
1583 7098 5.291971 TCGGTCTAAATATACTTTTCGCCC 58.708 41.667 0.00 0.00 0.00 6.13
1584 7099 4.450080 CGGTCTAAATATACTTTTCGCCCC 59.550 45.833 0.00 0.00 0.00 5.80
1585 7100 5.370679 GGTCTAAATATACTTTTCGCCCCA 58.629 41.667 0.00 0.00 0.00 4.96
1586 7101 5.469084 GGTCTAAATATACTTTTCGCCCCAG 59.531 44.000 0.00 0.00 0.00 4.45
1587 7102 5.469084 GTCTAAATATACTTTTCGCCCCAGG 59.531 44.000 0.00 0.00 0.00 4.45
1588 7103 2.271944 ATATACTTTTCGCCCCAGGC 57.728 50.000 0.00 0.00 46.75 4.85
1606 7121 1.934463 CCGAGATGGCCGAAATTCG 59.066 57.895 8.62 8.62 40.07 3.34
1616 7131 3.526825 CGAAATTCGGCCGAAATCC 57.473 52.632 41.31 29.08 37.69 3.01
1617 7132 0.730265 CGAAATTCGGCCGAAATCCA 59.270 50.000 41.31 22.04 37.69 3.41
1618 7133 1.333619 CGAAATTCGGCCGAAATCCAT 59.666 47.619 41.31 24.03 37.69 3.41
1620 7135 3.733684 CGAAATTCGGCCGAAATCCATTT 60.734 43.478 41.31 33.64 37.69 2.32
1621 7136 3.885724 AATTCGGCCGAAATCCATTTT 57.114 38.095 41.31 26.70 37.69 1.82
1622 7137 3.885724 ATTCGGCCGAAATCCATTTTT 57.114 38.095 41.31 20.98 37.69 1.94
1642 7157 3.438297 TTTCGGCCGAAAATCAAAACA 57.562 38.095 42.69 22.90 40.63 2.83
1643 7158 2.409152 TCGGCCGAAAATCAAAACAC 57.591 45.000 28.99 0.00 0.00 3.32
1644 7159 1.676529 TCGGCCGAAAATCAAAACACA 59.323 42.857 28.99 0.00 0.00 3.72
1645 7160 2.050691 CGGCCGAAAATCAAAACACAG 58.949 47.619 24.07 0.00 0.00 3.66
1693 7208 2.104792 ACTTGAGCTGCCAGTTGAACTA 59.895 45.455 0.00 0.00 0.00 2.24
1737 7253 9.443323 CATGGTATCTCCCTCTAGATATATACG 57.557 40.741 0.00 0.00 39.89 3.06
1738 7254 7.975608 TGGTATCTCCCTCTAGATATATACGG 58.024 42.308 0.00 0.00 39.89 4.02
1818 7528 6.512342 GGTATACTACCTAGCACACTATGG 57.488 45.833 2.25 0.00 45.52 2.74
1819 7529 6.008960 GGTATACTACCTAGCACACTATGGT 58.991 44.000 2.25 0.00 45.52 3.55
1820 7530 6.150809 GGTATACTACCTAGCACACTATGGTC 59.849 46.154 2.25 0.00 45.52 4.02
1821 7531 4.252570 ACTACCTAGCACACTATGGTCT 57.747 45.455 0.00 0.00 40.36 3.85
1822 7532 5.384145 ACTACCTAGCACACTATGGTCTA 57.616 43.478 0.00 0.00 40.36 2.59
1863 7573 3.290948 AGCTTGGTAAAGTCAACCACA 57.709 42.857 0.00 0.00 46.56 4.17
1905 7615 2.912956 AGGGACATTTTGGTGAGCTCTA 59.087 45.455 16.19 0.00 0.00 2.43
1927 7637 8.179509 TCTATCTTAGGAAGTGCTAACCATAC 57.820 38.462 0.00 0.00 0.00 2.39
1931 7641 7.124052 TCTTAGGAAGTGCTAACCATACTACT 58.876 38.462 0.00 0.00 0.00 2.57
1932 7642 5.855740 AGGAAGTGCTAACCATACTACTC 57.144 43.478 0.00 0.00 0.00 2.59
1933 7643 4.650131 AGGAAGTGCTAACCATACTACTCC 59.350 45.833 0.00 0.00 0.00 3.85
1938 7648 2.557490 GCTAACCATACTACTCCCTCCG 59.443 54.545 0.00 0.00 0.00 4.63
1940 7650 2.842645 ACCATACTACTCCCTCCGTT 57.157 50.000 0.00 0.00 0.00 4.44
1942 7652 1.962100 CCATACTACTCCCTCCGTTCC 59.038 57.143 0.00 0.00 0.00 3.62
1944 7654 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
1945 7655 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1946 7656 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1948 7658 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1949 7659 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1950 7660 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1951 7661 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1952 7662 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1953 7663 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1954 7664 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1955 7665 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1956 7666 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1958 7668 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1960 7670 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1961 7671 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1962 7672 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1964 7674 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
1965 7675 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
1966 7676 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
1967 7677 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
1968 7678 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
1969 7679 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
1971 7681 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
1972 7682 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
1974 7684 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
1977 7687 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
1979 7689 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1980 7690 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2008 7718 7.544804 ACATCTAGATACATCCATACTTGCA 57.455 36.000 4.54 0.00 0.00 4.08
2009 7719 7.966812 ACATCTAGATACATCCATACTTGCAA 58.033 34.615 4.54 0.00 0.00 4.08
2010 7720 7.875041 ACATCTAGATACATCCATACTTGCAAC 59.125 37.037 4.54 0.00 0.00 4.17
2011 7721 7.360113 TCTAGATACATCCATACTTGCAACA 57.640 36.000 0.00 0.00 0.00 3.33
2012 7722 7.791029 TCTAGATACATCCATACTTGCAACAA 58.209 34.615 0.00 0.00 0.00 2.83
2013 7723 6.932356 AGATACATCCATACTTGCAACAAG 57.068 37.500 5.80 5.80 0.00 3.16
2016 7726 8.046708 AGATACATCCATACTTGCAACAAGTAA 58.953 33.333 20.49 8.15 36.45 2.24
2019 7729 7.538575 ACATCCATACTTGCAACAAGTAATTC 58.461 34.615 20.49 0.00 36.45 2.17
2022 7732 5.123186 CCATACTTGCAACAAGTAATTCGGA 59.877 40.000 20.49 2.49 36.45 4.55
2025 7735 5.333492 TACTTGCAACAAGTAATTCGGAACG 60.333 40.000 15.81 0.00 40.66 3.95
2050 7760 6.208840 AGGGAGTATTTAAGAACCCAACAA 57.791 37.500 0.00 0.00 39.73 2.83
2077 7787 1.335810 CAATGGCCTGAACGATCATGG 59.664 52.381 3.32 1.58 34.37 3.66
2079 7789 0.107703 TGGCCTGAACGATCATGGAC 60.108 55.000 3.32 11.11 34.37 4.02
2130 7840 8.041323 AGAGTGTACCATTTACCTCACTTATTG 58.959 37.037 0.00 0.00 36.49 1.90
2166 7876 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2171 7881 3.339713 ACTCCCTCCGTCCCAATAATA 57.660 47.619 0.00 0.00 0.00 0.98
2177 7887 5.482878 TCCCTCCGTCCCAATAATATAAGAC 59.517 44.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.131196 GAGATCTGCTGCGGCGAGA 62.131 63.158 12.98 16.44 42.25 4.04
14 15 2.657944 GAGATCTGCTGCGGCGAG 60.658 66.667 12.98 11.53 42.25 5.03
15 16 3.131196 GAGAGATCTGCTGCGGCGA 62.131 63.158 12.98 13.48 42.25 5.54
16 17 2.657944 GAGAGATCTGCTGCGGCG 60.658 66.667 13.96 0.51 42.25 6.46
18 19 2.420890 GGGAGAGATCTGCTGCGG 59.579 66.667 0.00 0.95 34.50 5.69
20 21 1.145819 GTGGGGAGAGATCTGCTGC 59.854 63.158 0.00 2.47 34.50 5.25
21 22 1.134461 CAAGTGGGGAGAGATCTGCTG 60.134 57.143 0.00 0.00 34.50 4.41
22 23 1.202330 CAAGTGGGGAGAGATCTGCT 58.798 55.000 0.00 0.00 34.50 4.24
23 24 0.463474 GCAAGTGGGGAGAGATCTGC 60.463 60.000 0.00 0.00 0.00 4.26
24 25 1.138661 GAGCAAGTGGGGAGAGATCTG 59.861 57.143 0.00 0.00 0.00 2.90
25 26 1.494960 GAGCAAGTGGGGAGAGATCT 58.505 55.000 0.00 0.00 0.00 2.75
27 28 0.324738 TCGAGCAAGTGGGGAGAGAT 60.325 55.000 0.00 0.00 0.00 2.75
28 29 0.541998 TTCGAGCAAGTGGGGAGAGA 60.542 55.000 0.00 0.00 0.00 3.10
30 31 1.975327 CTTCGAGCAAGTGGGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
31 32 1.743252 GCTTCGAGCAAGTGGGGAG 60.743 63.158 2.53 0.00 41.89 4.30
32 33 1.768684 AAGCTTCGAGCAAGTGGGGA 61.769 55.000 0.00 0.00 45.56 4.81
33 34 1.301677 GAAGCTTCGAGCAAGTGGGG 61.302 60.000 11.40 0.00 45.56 4.96
34 35 0.321122 AGAAGCTTCGAGCAAGTGGG 60.321 55.000 20.43 0.00 45.56 4.61
35 36 1.074752 GAGAAGCTTCGAGCAAGTGG 58.925 55.000 20.43 0.00 45.56 4.00
36 37 0.712775 CGAGAAGCTTCGAGCAAGTG 59.287 55.000 20.43 2.44 45.56 3.16
37 38 0.315568 ACGAGAAGCTTCGAGCAAGT 59.684 50.000 20.43 12.03 45.56 3.16
39 40 0.388649 GGACGAGAAGCTTCGAGCAA 60.389 55.000 20.43 0.00 45.56 3.91
40 41 1.213013 GGACGAGAAGCTTCGAGCA 59.787 57.895 20.43 0.00 45.56 4.26
42 43 1.063469 GAGAGGACGAGAAGCTTCGAG 59.937 57.143 20.43 19.25 43.03 4.04
43 44 1.088306 GAGAGGACGAGAAGCTTCGA 58.912 55.000 20.43 0.00 43.03 3.71
44 45 0.099791 GGAGAGGACGAGAAGCTTCG 59.900 60.000 20.43 13.41 45.70 3.79
45 46 0.458260 GGGAGAGGACGAGAAGCTTC 59.542 60.000 19.11 19.11 0.00 3.86
46 47 0.040499 AGGGAGAGGACGAGAAGCTT 59.960 55.000 0.00 0.00 0.00 3.74
48 49 1.388837 GGAGGGAGAGGACGAGAAGC 61.389 65.000 0.00 0.00 0.00 3.86
50 51 1.215679 AGGGAGGGAGAGGACGAGAA 61.216 60.000 0.00 0.00 0.00 2.87
51 52 1.619975 AGGGAGGGAGAGGACGAGA 60.620 63.158 0.00 0.00 0.00 4.04
53 54 1.619975 AGAGGGAGGGAGAGGACGA 60.620 63.158 0.00 0.00 0.00 4.20
55 56 0.185175 GAGAGAGGGAGGGAGAGGAC 59.815 65.000 0.00 0.00 0.00 3.85
56 57 0.047176 AGAGAGAGGGAGGGAGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
57 58 0.478507 GAGAGAGAGGGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
59 60 0.923358 GTGAGAGAGAGGGAGGGAGA 59.077 60.000 0.00 0.00 0.00 3.71
61 62 0.333312 GTGTGAGAGAGAGGGAGGGA 59.667 60.000 0.00 0.00 0.00 4.20
62 63 0.686112 GGTGTGAGAGAGAGGGAGGG 60.686 65.000 0.00 0.00 0.00 4.30
63 64 1.034838 CGGTGTGAGAGAGAGGGAGG 61.035 65.000 0.00 0.00 0.00 4.30
64 65 0.322997 ACGGTGTGAGAGAGAGGGAG 60.323 60.000 0.00 0.00 0.00 4.30
65 66 0.322636 GACGGTGTGAGAGAGAGGGA 60.323 60.000 0.00 0.00 0.00 4.20
66 67 1.316706 GGACGGTGTGAGAGAGAGGG 61.317 65.000 0.00 0.00 0.00 4.30
68 69 0.956410 ACGGACGGTGTGAGAGAGAG 60.956 60.000 0.00 0.00 0.00 3.20
69 70 1.072678 ACGGACGGTGTGAGAGAGA 59.927 57.895 0.00 0.00 0.00 3.10
70 71 1.210413 CACGGACGGTGTGAGAGAG 59.790 63.158 5.04 0.00 41.89 3.20
71 72 3.351450 CACGGACGGTGTGAGAGA 58.649 61.111 5.04 0.00 41.89 3.10
77 78 3.876589 GCACCATCACGGACGGTGT 62.877 63.158 16.74 0.00 46.10 4.16
78 79 3.118454 GCACCATCACGGACGGTG 61.118 66.667 12.85 12.85 46.96 4.94
79 80 4.388499 GGCACCATCACGGACGGT 62.388 66.667 0.00 0.00 38.63 4.83
80 81 4.082523 AGGCACCATCACGGACGG 62.083 66.667 0.00 0.00 38.63 4.79
83 84 4.451150 GCGAGGCACCATCACGGA 62.451 66.667 0.00 0.00 38.63 4.69
87 88 2.363711 GATACGGCGAGGCACCATCA 62.364 60.000 16.62 0.00 0.00 3.07
88 89 1.664965 GATACGGCGAGGCACCATC 60.665 63.158 16.62 0.58 0.00 3.51
89 90 2.421739 GATACGGCGAGGCACCAT 59.578 61.111 16.62 0.00 0.00 3.55
90 91 3.845259 GGATACGGCGAGGCACCA 61.845 66.667 16.62 0.00 0.00 4.17
91 92 3.845259 TGGATACGGCGAGGCACC 61.845 66.667 16.62 9.98 42.51 5.01
93 94 4.201679 CGTGGATACGGCGAGGCA 62.202 66.667 16.62 0.00 46.23 4.75
103 104 3.570125 CAGAGTTAGATGGAGCGTGGATA 59.430 47.826 0.00 0.00 0.00 2.59
104 105 2.363680 CAGAGTTAGATGGAGCGTGGAT 59.636 50.000 0.00 0.00 0.00 3.41
105 106 1.751351 CAGAGTTAGATGGAGCGTGGA 59.249 52.381 0.00 0.00 0.00 4.02
106 107 1.804372 GCAGAGTTAGATGGAGCGTGG 60.804 57.143 0.00 0.00 0.00 4.94
107 108 1.565305 GCAGAGTTAGATGGAGCGTG 58.435 55.000 0.00 0.00 0.00 5.34
108 109 0.461961 GGCAGAGTTAGATGGAGCGT 59.538 55.000 0.00 0.00 0.00 5.07
109 110 0.461548 TGGCAGAGTTAGATGGAGCG 59.538 55.000 0.00 0.00 0.00 5.03
111 112 2.702478 TGGATGGCAGAGTTAGATGGAG 59.298 50.000 0.00 0.00 0.00 3.86
112 113 2.763039 TGGATGGCAGAGTTAGATGGA 58.237 47.619 0.00 0.00 0.00 3.41
115 116 4.265073 GTGTTTGGATGGCAGAGTTAGAT 58.735 43.478 0.00 0.00 0.00 1.98
116 117 3.559171 GGTGTTTGGATGGCAGAGTTAGA 60.559 47.826 0.00 0.00 0.00 2.10
117 118 2.749621 GGTGTTTGGATGGCAGAGTTAG 59.250 50.000 0.00 0.00 0.00 2.34
119 120 1.145738 AGGTGTTTGGATGGCAGAGTT 59.854 47.619 0.00 0.00 0.00 3.01
120 121 0.773644 AGGTGTTTGGATGGCAGAGT 59.226 50.000 0.00 0.00 0.00 3.24
121 122 1.004044 AGAGGTGTTTGGATGGCAGAG 59.996 52.381 0.00 0.00 0.00 3.35
124 125 2.290896 CCTAAGAGGTGTTTGGATGGCA 60.291 50.000 0.00 0.00 0.00 4.92
125 126 2.369394 CCTAAGAGGTGTTTGGATGGC 58.631 52.381 0.00 0.00 0.00 4.40
126 127 2.025887 AGCCTAAGAGGTGTTTGGATGG 60.026 50.000 0.00 0.00 37.80 3.51
128 129 2.025887 CCAGCCTAAGAGGTGTTTGGAT 60.026 50.000 0.00 0.00 37.80 3.41
129 130 1.351017 CCAGCCTAAGAGGTGTTTGGA 59.649 52.381 0.00 0.00 37.80 3.53
130 131 1.351017 TCCAGCCTAAGAGGTGTTTGG 59.649 52.381 0.00 0.00 37.80 3.28
131 132 2.039084 ACTCCAGCCTAAGAGGTGTTTG 59.961 50.000 0.00 0.00 37.80 2.93
132 133 2.339769 ACTCCAGCCTAAGAGGTGTTT 58.660 47.619 0.00 0.00 37.80 2.83
133 134 2.031495 ACTCCAGCCTAAGAGGTGTT 57.969 50.000 0.00 0.00 37.80 3.32
134 135 2.031495 AACTCCAGCCTAAGAGGTGT 57.969 50.000 0.00 0.00 37.80 4.16
135 136 3.100671 ACTAACTCCAGCCTAAGAGGTG 58.899 50.000 0.00 0.00 37.80 4.00
136 137 3.476485 ACTAACTCCAGCCTAAGAGGT 57.524 47.619 0.00 0.00 37.80 3.85
137 138 3.769844 TGAACTAACTCCAGCCTAAGAGG 59.230 47.826 0.00 0.00 38.80 3.69
140 141 3.118592 CCCTGAACTAACTCCAGCCTAAG 60.119 52.174 0.00 0.00 0.00 2.18
141 142 2.838202 CCCTGAACTAACTCCAGCCTAA 59.162 50.000 0.00 0.00 0.00 2.69
143 144 1.280457 CCCTGAACTAACTCCAGCCT 58.720 55.000 0.00 0.00 0.00 4.58
144 145 0.984995 ACCCTGAACTAACTCCAGCC 59.015 55.000 0.00 0.00 0.00 4.85
145 146 2.861147 AACCCTGAACTAACTCCAGC 57.139 50.000 0.00 0.00 0.00 4.85
146 147 5.740290 TTCTAACCCTGAACTAACTCCAG 57.260 43.478 0.00 0.00 0.00 3.86
147 148 6.023603 AGATTCTAACCCTGAACTAACTCCA 58.976 40.000 0.00 0.00 0.00 3.86
150 151 8.667592 AGTTAGATTCTAACCCTGAACTAACT 57.332 34.615 25.81 0.00 39.65 2.24
151 152 8.751242 AGAGTTAGATTCTAACCCTGAACTAAC 58.249 37.037 25.81 0.00 37.72 2.34
152 153 8.896722 AGAGTTAGATTCTAACCCTGAACTAA 57.103 34.615 25.81 0.00 0.00 2.24
153 154 9.986157 TTAGAGTTAGATTCTAACCCTGAACTA 57.014 33.333 25.81 17.71 33.43 2.24
155 156 8.929827 GTTAGAGTTAGATTCTAACCCTGAAC 57.070 38.462 25.81 20.67 45.71 3.18
163 164 8.750298 CAGTTGGAGGTTAGAGTTAGATTCTAA 58.250 37.037 1.90 1.90 35.39 2.10
164 165 8.114102 TCAGTTGGAGGTTAGAGTTAGATTCTA 58.886 37.037 0.00 0.00 0.00 2.10
165 166 6.954684 TCAGTTGGAGGTTAGAGTTAGATTCT 59.045 38.462 0.00 0.00 0.00 2.40
166 167 7.171630 TCAGTTGGAGGTTAGAGTTAGATTC 57.828 40.000 0.00 0.00 0.00 2.52
167 168 7.176589 CTCAGTTGGAGGTTAGAGTTAGATT 57.823 40.000 0.00 0.00 40.13 2.40
169 170 6.075984 AACTCAGTTGGAGGTTAGAGTTAGA 58.924 40.000 0.00 0.00 42.28 2.10
170 171 6.347859 AACTCAGTTGGAGGTTAGAGTTAG 57.652 41.667 0.00 0.00 42.28 2.34
171 172 7.236529 TCTAACTCAGTTGGAGGTTAGAGTTA 58.763 38.462 0.00 11.06 42.28 2.24
172 173 6.075984 TCTAACTCAGTTGGAGGTTAGAGTT 58.924 40.000 0.00 10.06 42.28 3.01
173 174 5.642165 TCTAACTCAGTTGGAGGTTAGAGT 58.358 41.667 0.00 0.00 42.28 3.24
174 175 6.202516 CTCTAACTCAGTTGGAGGTTAGAG 57.797 45.833 20.59 19.93 42.28 2.43
182 183 6.269077 TGTTTGGATACTCTAACTCAGTTGGA 59.731 38.462 3.26 3.26 32.45 3.53
185 186 6.295916 CCCTGTTTGGATACTCTAACTCAGTT 60.296 42.308 0.00 0.00 38.35 3.16
187 188 5.665459 CCCTGTTTGGATACTCTAACTCAG 58.335 45.833 0.00 0.00 38.35 3.35
189 190 4.443621 GCCCTGTTTGGATACTCTAACTC 58.556 47.826 0.00 0.00 38.35 3.01
190 191 3.200165 GGCCCTGTTTGGATACTCTAACT 59.800 47.826 0.00 0.00 38.35 2.24
191 192 3.542648 GGCCCTGTTTGGATACTCTAAC 58.457 50.000 0.00 0.00 38.35 2.34
192 193 2.169769 CGGCCCTGTTTGGATACTCTAA 59.830 50.000 0.00 0.00 38.35 2.10
193 194 1.760613 CGGCCCTGTTTGGATACTCTA 59.239 52.381 0.00 0.00 38.35 2.43
194 195 0.541863 CGGCCCTGTTTGGATACTCT 59.458 55.000 0.00 0.00 38.35 3.24
195 196 0.252197 ACGGCCCTGTTTGGATACTC 59.748 55.000 0.00 0.00 38.35 2.59
197 198 0.808755 CAACGGCCCTGTTTGGATAC 59.191 55.000 0.00 0.00 38.35 2.24
198 199 0.402504 ACAACGGCCCTGTTTGGATA 59.597 50.000 0.00 0.00 38.35 2.59
199 200 0.469144 AACAACGGCCCTGTTTGGAT 60.469 50.000 11.28 0.00 38.35 3.41
200 201 1.076632 AACAACGGCCCTGTTTGGA 60.077 52.632 11.28 0.00 38.35 3.53
201 202 1.067250 CAACAACGGCCCTGTTTGG 59.933 57.895 13.86 2.58 34.80 3.28
202 203 1.025812 TACAACAACGGCCCTGTTTG 58.974 50.000 13.86 11.93 34.80 2.93
203 204 1.611491 CATACAACAACGGCCCTGTTT 59.389 47.619 13.86 9.17 34.80 2.83
204 205 1.243902 CATACAACAACGGCCCTGTT 58.756 50.000 11.28 11.28 37.49 3.16
206 207 0.802494 GACATACAACAACGGCCCTG 59.198 55.000 0.00 0.00 0.00 4.45
207 208 0.322187 GGACATACAACAACGGCCCT 60.322 55.000 0.00 0.00 0.00 5.19
208 209 0.606944 TGGACATACAACAACGGCCC 60.607 55.000 0.00 0.00 0.00 5.80
209 210 0.519961 GTGGACATACAACAACGGCC 59.480 55.000 0.00 0.00 0.00 6.13
211 212 1.804151 CAGGTGGACATACAACAACGG 59.196 52.381 0.00 0.00 0.00 4.44
212 213 1.196808 GCAGGTGGACATACAACAACG 59.803 52.381 0.00 0.00 0.00 4.10
213 214 1.539827 GGCAGGTGGACATACAACAAC 59.460 52.381 0.00 0.00 0.00 3.32
215 216 0.037590 GGGCAGGTGGACATACAACA 59.962 55.000 0.00 0.00 0.00 3.33
216 217 0.328258 AGGGCAGGTGGACATACAAC 59.672 55.000 0.00 0.00 0.00 3.32
263 451 1.901650 CTTTGACTTCGGCCGTGCTC 61.902 60.000 27.15 17.27 0.00 4.26
299 487 2.324860 GGTTGCCATTTGTAAAGACGC 58.675 47.619 0.00 0.00 0.00 5.19
345 535 2.765250 AATGACGAAGAGGCACGCGT 62.765 55.000 5.58 5.58 43.31 6.01
406 603 1.548719 CTCGTGGACCATGGTAGACAA 59.451 52.381 19.80 1.45 0.00 3.18
419 616 4.649705 TCCTTGGGGCCTCGTGGA 62.650 66.667 11.91 11.91 34.57 4.02
432 629 1.384191 GGTTGGCAGGGATGTCCTT 59.616 57.895 0.00 0.00 45.47 3.36
728 1288 5.107760 GCTTTGACTACACAACAAATGCATG 60.108 40.000 0.00 0.00 33.97 4.06
785 2495 0.181350 GGATACCTTGGCCTCACAGG 59.819 60.000 3.32 6.81 38.80 4.00
820 2541 6.869206 ACCAACATACATAGGACTAGTGTT 57.131 37.500 0.00 0.00 0.00 3.32
865 2598 0.672711 GTCCGTAGCTTTGGTCCACC 60.673 60.000 0.00 0.00 0.00 4.61
876 2609 3.701604 CTGGCACTCCGTCCGTAGC 62.702 68.421 0.00 0.00 34.14 3.58
885 2618 0.811281 GTAAACCATGCTGGCACTCC 59.189 55.000 0.00 0.00 42.67 3.85
925 2658 5.338708 CCCCTAACACAACTCAAGATCTCAT 60.339 44.000 0.00 0.00 0.00 2.90
938 2671 1.809133 TCACAGACCCCCTAACACAA 58.191 50.000 0.00 0.00 0.00 3.33
966 2726 3.942130 AATCCCAGTTTTTACTGCTGC 57.058 42.857 0.00 0.00 36.46 5.25
986 2746 3.192422 CCTTGGCATATGGTTCGACAAAA 59.808 43.478 4.56 0.00 0.00 2.44
992 2752 1.864711 CGTACCTTGGCATATGGTTCG 59.135 52.381 15.04 15.04 39.63 3.95
1012 2772 3.050275 GTCCCACAACGCCAGCTC 61.050 66.667 0.00 0.00 0.00 4.09
1070 2846 1.806542 TCATCTCAAGAAACGGCAAGC 59.193 47.619 0.00 0.00 0.00 4.01
1122 2898 4.220602 TCTGCAGCAAGTGATACTCTTACA 59.779 41.667 9.47 0.00 0.00 2.41
1134 2910 3.154787 TGCTCCTCTGCAGCAAGT 58.845 55.556 9.47 0.00 44.02 3.16
1160 2936 1.291877 CGGGTTTCTCCTCTTGCACG 61.292 60.000 0.00 0.00 36.25 5.34
1175 2966 4.028131 TCCACTCTACATATTGTTCGGGT 58.972 43.478 0.00 0.00 0.00 5.28
1181 2972 4.202398 CCATGCCTCCACTCTACATATTGT 60.202 45.833 0.00 0.00 0.00 2.71
1194 2988 1.848388 ACTCATTCATCCATGCCTCCA 59.152 47.619 0.00 0.00 0.00 3.86
1218 3012 5.941555 ACCAACCATACTTCCTCTCTTAG 57.058 43.478 0.00 0.00 0.00 2.18
1219 3013 5.783360 TCAACCAACCATACTTCCTCTCTTA 59.217 40.000 0.00 0.00 0.00 2.10
1236 3030 0.537143 ATCCAGCGTGCTTCAACCAA 60.537 50.000 0.00 0.00 0.00 3.67
1286 3085 7.039363 CCATTCTAATCCTCTTCTTCCGTCTAT 60.039 40.741 0.00 0.00 0.00 1.98
1287 3086 6.265649 CCATTCTAATCCTCTTCTTCCGTCTA 59.734 42.308 0.00 0.00 0.00 2.59
1371 6881 5.882557 TCTGAATTTTCTAGATCCCAAGTGC 59.117 40.000 0.00 0.00 0.00 4.40
1401 6916 6.140108 CGAAAATCAAAACACAGGTCTTAACG 59.860 38.462 0.00 0.00 0.00 3.18
1410 6925 5.276348 GCTGAAACCGAAAATCAAAACACAG 60.276 40.000 0.00 0.00 0.00 3.66
1411 6926 4.564769 GCTGAAACCGAAAATCAAAACACA 59.435 37.500 0.00 0.00 0.00 3.72
1412 6927 4.803613 AGCTGAAACCGAAAATCAAAACAC 59.196 37.500 0.00 0.00 0.00 3.32
1413 6928 5.004922 AGCTGAAACCGAAAATCAAAACA 57.995 34.783 0.00 0.00 0.00 2.83
1414 6929 5.966636 AAGCTGAAACCGAAAATCAAAAC 57.033 34.783 0.00 0.00 0.00 2.43
1416 6931 6.976636 AAAAAGCTGAAACCGAAAATCAAA 57.023 29.167 0.00 0.00 0.00 2.69
1437 6952 1.259609 TCTCGGTCTAGGGCGAAAAA 58.740 50.000 0.00 0.00 0.00 1.94
1438 6953 1.136305 CATCTCGGTCTAGGGCGAAAA 59.864 52.381 0.00 0.00 0.00 2.29
1439 6954 0.744874 CATCTCGGTCTAGGGCGAAA 59.255 55.000 0.00 0.00 0.00 3.46
1440 6955 1.107538 CCATCTCGGTCTAGGGCGAA 61.108 60.000 0.00 0.00 0.00 4.70
1441 6956 1.528542 CCATCTCGGTCTAGGGCGA 60.529 63.158 0.00 0.00 0.00 5.54
1442 6957 3.043419 CCATCTCGGTCTAGGGCG 58.957 66.667 0.00 0.00 0.00 6.13
1443 6958 2.737830 GCCATCTCGGTCTAGGGC 59.262 66.667 0.00 0.00 36.97 5.19
1444 6959 2.565645 CGGCCATCTCGGTCTAGGG 61.566 68.421 2.24 0.00 37.17 3.53
1445 6960 1.107538 TTCGGCCATCTCGGTCTAGG 61.108 60.000 2.24 0.00 37.17 3.02
1446 6961 0.962489 ATTCGGCCATCTCGGTCTAG 59.038 55.000 2.24 0.00 37.17 2.43
1447 6962 1.410004 AATTCGGCCATCTCGGTCTA 58.590 50.000 2.24 0.00 37.17 2.59
1448 6963 0.541863 AAATTCGGCCATCTCGGTCT 59.458 50.000 2.24 0.00 37.17 3.85
1449 6964 0.938008 GAAATTCGGCCATCTCGGTC 59.062 55.000 2.24 0.00 36.97 4.79
1450 6965 0.810031 CGAAATTCGGCCATCTCGGT 60.810 55.000 7.61 0.00 36.00 4.69
1451 6966 1.934463 CGAAATTCGGCCATCTCGG 59.066 57.895 7.61 0.00 36.00 4.63
1462 6977 9.885743 CGAAATTTTTGAATATGACCGAAATTC 57.114 29.630 0.00 0.00 0.00 2.17
1463 6978 8.868916 CCGAAATTTTTGAATATGACCGAAATT 58.131 29.630 0.00 0.00 0.00 1.82
1464 6979 7.010091 GCCGAAATTTTTGAATATGACCGAAAT 59.990 33.333 0.00 0.00 0.00 2.17
1466 6981 5.802956 GCCGAAATTTTTGAATATGACCGAA 59.197 36.000 0.00 0.00 0.00 4.30
1467 6982 5.124776 AGCCGAAATTTTTGAATATGACCGA 59.875 36.000 0.00 0.00 0.00 4.69
1468 6983 5.229887 CAGCCGAAATTTTTGAATATGACCG 59.770 40.000 0.00 0.00 0.00 4.79
1469 6984 6.329496 TCAGCCGAAATTTTTGAATATGACC 58.671 36.000 0.00 0.00 0.00 4.02
1470 6985 7.810766 TTCAGCCGAAATTTTTGAATATGAC 57.189 32.000 0.00 0.00 0.00 3.06
1509 7024 9.255304 GGTCAAATTTAAGTTAAATTGCAGTCA 57.745 29.630 26.56 10.30 44.98 3.41
1510 7025 9.255304 TGGTCAAATTTAAGTTAAATTGCAGTC 57.745 29.630 26.56 18.24 44.98 3.51
1511 7026 9.606631 TTGGTCAAATTTAAGTTAAATTGCAGT 57.393 25.926 26.56 13.38 44.98 4.40
1538 7053 7.012232 ACCGAAATTGCTCAAATTTGACAAAAT 59.988 29.630 25.77 20.47 46.29 1.82
1543 7058 5.222631 AGACCGAAATTGCTCAAATTTGAC 58.777 37.500 16.91 13.69 46.29 3.18
1554 7069 9.155053 CGAAAAGTATATTTAGACCGAAATTGC 57.845 33.333 0.00 0.00 31.51 3.56
1555 7070 9.155053 GCGAAAAGTATATTTAGACCGAAATTG 57.845 33.333 0.00 0.00 31.51 2.32
1557 7072 7.041576 GGGCGAAAAGTATATTTAGACCGAAAT 60.042 37.037 0.00 0.00 34.10 2.17
1558 7073 6.258507 GGGCGAAAAGTATATTTAGACCGAAA 59.741 38.462 0.00 0.00 34.10 3.46
1559 7074 5.754890 GGGCGAAAAGTATATTTAGACCGAA 59.245 40.000 0.00 0.00 34.10 4.30
1560 7075 5.291971 GGGCGAAAAGTATATTTAGACCGA 58.708 41.667 0.00 0.00 34.10 4.69
1561 7076 4.450080 GGGGCGAAAAGTATATTTAGACCG 59.550 45.833 0.00 0.00 42.25 4.79
1562 7077 5.370679 TGGGGCGAAAAGTATATTTAGACC 58.629 41.667 0.00 0.00 41.04 3.85
1563 7078 5.469084 CCTGGGGCGAAAAGTATATTTAGAC 59.531 44.000 0.00 0.00 0.00 2.59
1565 7080 4.215613 GCCTGGGGCGAAAAGTATATTTAG 59.784 45.833 0.00 0.00 39.62 1.85
1567 7082 2.956333 GCCTGGGGCGAAAAGTATATTT 59.044 45.455 0.00 0.00 39.62 1.40
1568 7083 2.583143 GCCTGGGGCGAAAAGTATATT 58.417 47.619 0.00 0.00 39.62 1.28
1569 7084 2.271944 GCCTGGGGCGAAAAGTATAT 57.728 50.000 0.00 0.00 39.62 0.86
1570 7085 3.792712 GCCTGGGGCGAAAAGTATA 57.207 52.632 0.00 0.00 39.62 1.47
1571 7086 4.657952 GCCTGGGGCGAAAAGTAT 57.342 55.556 0.00 0.00 39.62 2.12
1588 7103 1.934463 CGAATTTCGGCCATCTCGG 59.066 57.895 10.95 0.00 36.00 4.63
1598 7113 0.730265 TGGATTTCGGCCGAATTTCG 59.270 50.000 38.89 11.81 40.07 3.46
1599 7114 3.436700 AATGGATTTCGGCCGAATTTC 57.563 42.857 38.89 33.33 33.79 2.17
1600 7115 3.885724 AAATGGATTTCGGCCGAATTT 57.114 38.095 38.89 30.43 33.79 1.82
1602 7117 3.885724 AAAAATGGATTTCGGCCGAAT 57.114 38.095 38.89 27.72 33.79 3.34
1622 7137 3.117046 GTGTTTTGATTTTCGGCCGAAA 58.883 40.909 41.63 41.63 41.69 3.46
1623 7138 2.099263 TGTGTTTTGATTTTCGGCCGAA 59.901 40.909 35.81 35.81 0.00 4.30
1625 7140 2.050691 CTGTGTTTTGATTTTCGGCCG 58.949 47.619 22.12 22.12 0.00 6.13
1626 7141 2.223947 ACCTGTGTTTTGATTTTCGGCC 60.224 45.455 0.00 0.00 0.00 6.13
1627 7142 3.092334 ACCTGTGTTTTGATTTTCGGC 57.908 42.857 0.00 0.00 0.00 5.54
1628 7143 6.416750 GTCTTAACCTGTGTTTTGATTTTCGG 59.583 38.462 0.00 0.00 35.87 4.30
1629 7144 6.970043 TGTCTTAACCTGTGTTTTGATTTTCG 59.030 34.615 0.00 0.00 35.87 3.46
1630 7145 7.043391 GCTGTCTTAACCTGTGTTTTGATTTTC 60.043 37.037 0.00 0.00 35.87 2.29
1631 7146 6.756542 GCTGTCTTAACCTGTGTTTTGATTTT 59.243 34.615 0.00 0.00 35.87 1.82
1632 7147 6.127479 TGCTGTCTTAACCTGTGTTTTGATTT 60.127 34.615 0.00 0.00 35.87 2.17
1633 7148 5.359576 TGCTGTCTTAACCTGTGTTTTGATT 59.640 36.000 0.00 0.00 35.87 2.57
1634 7149 4.887071 TGCTGTCTTAACCTGTGTTTTGAT 59.113 37.500 0.00 0.00 35.87 2.57
1636 7151 4.096382 AGTGCTGTCTTAACCTGTGTTTTG 59.904 41.667 0.00 0.00 35.87 2.44
1637 7152 4.096382 CAGTGCTGTCTTAACCTGTGTTTT 59.904 41.667 0.00 0.00 35.87 2.43
1638 7153 3.627577 CAGTGCTGTCTTAACCTGTGTTT 59.372 43.478 0.00 0.00 35.87 2.83
1639 7154 3.206150 CAGTGCTGTCTTAACCTGTGTT 58.794 45.455 0.00 0.00 38.52 3.32
1640 7155 2.838736 CAGTGCTGTCTTAACCTGTGT 58.161 47.619 0.00 0.00 0.00 3.72
1641 7156 1.532868 GCAGTGCTGTCTTAACCTGTG 59.467 52.381 8.18 0.00 0.00 3.66
1642 7157 1.140852 TGCAGTGCTGTCTTAACCTGT 59.859 47.619 17.60 0.00 0.00 4.00
1643 7158 1.882912 TGCAGTGCTGTCTTAACCTG 58.117 50.000 17.60 0.00 0.00 4.00
1644 7159 2.304180 AGATGCAGTGCTGTCTTAACCT 59.696 45.455 17.60 0.00 0.00 3.50
1645 7160 2.417933 CAGATGCAGTGCTGTCTTAACC 59.582 50.000 17.60 0.00 0.00 2.85
1693 7208 1.651737 TGTGGGTGTACAGCTACCAT 58.348 50.000 30.73 0.00 39.16 3.55
1816 7526 6.884472 TTTAAAGTCCTCATCCATAGACCA 57.116 37.500 0.00 0.00 0.00 4.02
1817 7527 7.509546 TCATTTAAAGTCCTCATCCATAGACC 58.490 38.462 0.00 0.00 0.00 3.85
1818 7528 8.964476 TTCATTTAAAGTCCTCATCCATAGAC 57.036 34.615 0.00 0.00 0.00 2.59
1819 7529 7.716998 GCTTCATTTAAAGTCCTCATCCATAGA 59.283 37.037 0.00 0.00 0.00 1.98
1820 7530 7.718753 AGCTTCATTTAAAGTCCTCATCCATAG 59.281 37.037 0.00 0.00 0.00 2.23
1821 7531 7.577303 AGCTTCATTTAAAGTCCTCATCCATA 58.423 34.615 0.00 0.00 0.00 2.74
1822 7532 6.430007 AGCTTCATTTAAAGTCCTCATCCAT 58.570 36.000 0.00 0.00 0.00 3.41
1863 7573 3.868619 TGTAAACTTGGTGGTAGCCTT 57.131 42.857 0.00 0.00 0.00 4.35
1905 7615 7.785506 AGTAGTATGGTTAGCACTTCCTAAGAT 59.214 37.037 0.00 0.00 0.00 2.40
1927 7637 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1931 7641 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1932 7642 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1933 7643 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1938 7648 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
1940 7650 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
1942 7652 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1944 7654 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1945 7655 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1946 7656 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1948 7658 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1949 7659 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1950 7660 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1951 7661 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1952 7662 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
1953 7663 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
1954 7664 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
1955 7665 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
1982 7692 9.259832 TGCAAGTATGGATGTATCTAGATGTAT 57.740 33.333 15.79 9.11 0.00 2.29
1985 7695 7.874528 TGTTGCAAGTATGGATGTATCTAGATG 59.125 37.037 15.79 0.00 0.00 2.90
1986 7696 7.966812 TGTTGCAAGTATGGATGTATCTAGAT 58.033 34.615 10.73 10.73 0.00 1.98
1987 7697 7.360113 TGTTGCAAGTATGGATGTATCTAGA 57.640 36.000 0.00 0.00 0.00 2.43
1988 7698 7.712639 ACTTGTTGCAAGTATGGATGTATCTAG 59.287 37.037 12.20 0.00 0.00 2.43
1990 7700 6.418101 ACTTGTTGCAAGTATGGATGTATCT 58.582 36.000 12.20 0.00 0.00 1.98
1991 7701 6.683974 ACTTGTTGCAAGTATGGATGTATC 57.316 37.500 12.20 0.00 0.00 2.24
1992 7702 8.752005 ATTACTTGTTGCAAGTATGGATGTAT 57.248 30.769 18.60 7.92 33.27 2.29
1993 7703 8.574251 AATTACTTGTTGCAAGTATGGATGTA 57.426 30.769 18.60 6.28 33.27 2.29
1994 7704 7.466746 AATTACTTGTTGCAAGTATGGATGT 57.533 32.000 18.60 0.00 33.27 3.06
1995 7705 6.688385 CGAATTACTTGTTGCAAGTATGGATG 59.312 38.462 18.60 7.89 33.27 3.51
1996 7706 6.183360 CCGAATTACTTGTTGCAAGTATGGAT 60.183 38.462 18.60 9.59 33.27 3.41
1998 7708 5.123186 TCCGAATTACTTGTTGCAAGTATGG 59.877 40.000 18.60 16.96 33.27 2.74
1999 7709 6.176975 TCCGAATTACTTGTTGCAAGTATG 57.823 37.500 18.60 11.03 33.27 2.39
2000 7710 6.608610 GTTCCGAATTACTTGTTGCAAGTAT 58.391 36.000 18.60 8.23 33.27 2.12
2001 7711 5.333492 CGTTCCGAATTACTTGTTGCAAGTA 60.333 40.000 15.26 15.26 0.00 2.24
2002 7712 4.553938 CGTTCCGAATTACTTGTTGCAAGT 60.554 41.667 17.05 17.05 0.00 3.16
2003 7713 3.906008 CGTTCCGAATTACTTGTTGCAAG 59.094 43.478 0.00 7.27 0.00 4.01
2004 7714 3.304123 CCGTTCCGAATTACTTGTTGCAA 60.304 43.478 0.00 0.00 0.00 4.08
2005 7715 2.224549 CCGTTCCGAATTACTTGTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
2006 7716 2.481185 TCCGTTCCGAATTACTTGTTGC 59.519 45.455 0.00 0.00 0.00 4.17
2007 7717 3.124636 CCTCCGTTCCGAATTACTTGTTG 59.875 47.826 0.00 0.00 0.00 3.33
2008 7718 3.332034 CCTCCGTTCCGAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
2009 7719 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2010 7720 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2011 7721 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2012 7722 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2013 7723 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2016 7726 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
2019 7729 3.382546 TCTTAAATACTCCCTCCGTTCCG 59.617 47.826 0.00 0.00 0.00 4.30
2022 7732 4.080695 GGGTTCTTAAATACTCCCTCCGTT 60.081 45.833 0.00 0.00 32.89 4.44
2025 7735 5.191426 GTTGGGTTCTTAAATACTCCCTCC 58.809 45.833 0.00 0.00 36.23 4.30
2040 7750 4.252878 CCATTGCCTTAATTGTTGGGTTC 58.747 43.478 0.00 0.00 0.00 3.62
2130 7840 7.932491 GGGAGTAGTATTCAAAGATAACCCTTC 59.068 40.741 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.