Multiple sequence alignment - TraesCS3A01G437900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G437900 chr3A 100.000 2705 0 0 1 2705 681395051 681397755 0.000000e+00 4996.0
1 TraesCS3A01G437900 chr3A 86.649 764 97 3 979 1741 681318779 681318020 0.000000e+00 841.0
2 TraesCS3A01G437900 chr3A 86.283 729 93 6 992 1716 681328800 681329525 0.000000e+00 785.0
3 TraesCS3A01G437900 chr3B 90.405 1480 98 21 621 2078 720262699 720264156 0.000000e+00 1906.0
4 TraesCS3A01G437900 chr3B 94.364 621 18 7 3 622 663177641 663177037 0.000000e+00 937.0
5 TraesCS3A01G437900 chr3B 87.291 779 89 7 979 1751 720183255 720182481 0.000000e+00 881.0
6 TraesCS3A01G437900 chr3B 86.597 761 97 3 982 1741 720178238 720177482 0.000000e+00 835.0
7 TraesCS3A01G437900 chr3D 96.101 795 21 5 959 1752 544439568 544440353 0.000000e+00 1288.0
8 TraesCS3A01G437900 chr3D 86.649 764 97 3 979 1741 544339953 544339194 0.000000e+00 841.0
9 TraesCS3A01G437900 chr3D 86.686 706 89 3 979 1683 544277979 544277278 0.000000e+00 778.0
10 TraesCS3A01G437900 chr3D 84.135 769 109 10 980 1741 544346966 544346204 0.000000e+00 732.0
11 TraesCS3A01G437900 chr3D 87.884 619 57 15 3 616 286899946 286900551 0.000000e+00 712.0
12 TraesCS3A01G437900 chr3D 88.974 390 32 8 1799 2178 544441930 544442318 3.150000e-129 472.0
13 TraesCS3A01G437900 chr3D 90.291 309 14 7 621 916 544439255 544439560 9.080000e-105 390.0
14 TraesCS3A01G437900 chr3D 84.974 193 28 1 2233 2425 544442341 544442532 7.640000e-46 195.0
15 TraesCS3A01G437900 chr3D 95.455 44 1 1 691 733 544353021 544353064 4.830000e-08 69.4
16 TraesCS3A01G437900 chr2A 97.254 619 17 0 1 619 322827049 322826431 0.000000e+00 1050.0
17 TraesCS3A01G437900 chr5B 94.472 615 18 1 3 617 473119544 473120142 0.000000e+00 933.0
18 TraesCS3A01G437900 chr2D 94.146 615 19 7 3 617 104907054 104906457 0.000000e+00 920.0
19 TraesCS3A01G437900 chr2D 94.003 617 20 3 3 619 89210470 89211069 0.000000e+00 918.0
20 TraesCS3A01G437900 chr1D 92.468 624 20 7 3 617 474236503 474235898 0.000000e+00 867.0
21 TraesCS3A01G437900 chr1D 90.969 454 17 3 174 619 282721362 282721799 8.340000e-165 590.0
22 TraesCS3A01G437900 chr5D 88.084 621 49 14 3 616 507219355 507218753 0.000000e+00 713.0
23 TraesCS3A01G437900 chr1B 87.680 625 23 17 3 618 368677972 368677393 0.000000e+00 678.0
24 TraesCS3A01G437900 chr1B 80.702 114 16 6 2162 2271 415231726 415231615 1.730000e-12 84.2
25 TraesCS3A01G437900 chr7B 86.570 618 58 17 5 615 387826914 387826315 0.000000e+00 658.0
26 TraesCS3A01G437900 chr5A 90.265 452 19 9 174 617 491697124 491697558 3.910000e-158 568.0
27 TraesCS3A01G437900 chr2B 79.775 89 18 0 2187 2275 768038088 768038000 6.250000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G437900 chr3A 681395051 681397755 2704 False 4996.00 4996 100.000 1 2705 1 chr3A.!!$F2 2704
1 TraesCS3A01G437900 chr3A 681318020 681318779 759 True 841.00 841 86.649 979 1741 1 chr3A.!!$R1 762
2 TraesCS3A01G437900 chr3A 681328800 681329525 725 False 785.00 785 86.283 992 1716 1 chr3A.!!$F1 724
3 TraesCS3A01G437900 chr3B 720262699 720264156 1457 False 1906.00 1906 90.405 621 2078 1 chr3B.!!$F1 1457
4 TraesCS3A01G437900 chr3B 663177037 663177641 604 True 937.00 937 94.364 3 622 1 chr3B.!!$R1 619
5 TraesCS3A01G437900 chr3B 720182481 720183255 774 True 881.00 881 87.291 979 1751 1 chr3B.!!$R3 772
6 TraesCS3A01G437900 chr3B 720177482 720178238 756 True 835.00 835 86.597 982 1741 1 chr3B.!!$R2 759
7 TraesCS3A01G437900 chr3D 544339194 544339953 759 True 841.00 841 86.649 979 1741 1 chr3D.!!$R2 762
8 TraesCS3A01G437900 chr3D 544277278 544277979 701 True 778.00 778 86.686 979 1683 1 chr3D.!!$R1 704
9 TraesCS3A01G437900 chr3D 544346204 544346966 762 True 732.00 732 84.135 980 1741 1 chr3D.!!$R3 761
10 TraesCS3A01G437900 chr3D 286899946 286900551 605 False 712.00 712 87.884 3 616 1 chr3D.!!$F1 613
11 TraesCS3A01G437900 chr3D 544439255 544442532 3277 False 586.25 1288 90.085 621 2425 4 chr3D.!!$F3 1804
12 TraesCS3A01G437900 chr2A 322826431 322827049 618 True 1050.00 1050 97.254 1 619 1 chr2A.!!$R1 618
13 TraesCS3A01G437900 chr5B 473119544 473120142 598 False 933.00 933 94.472 3 617 1 chr5B.!!$F1 614
14 TraesCS3A01G437900 chr2D 104906457 104907054 597 True 920.00 920 94.146 3 617 1 chr2D.!!$R1 614
15 TraesCS3A01G437900 chr2D 89210470 89211069 599 False 918.00 918 94.003 3 619 1 chr2D.!!$F1 616
16 TraesCS3A01G437900 chr1D 474235898 474236503 605 True 867.00 867 92.468 3 617 1 chr1D.!!$R1 614
17 TraesCS3A01G437900 chr5D 507218753 507219355 602 True 713.00 713 88.084 3 616 1 chr5D.!!$R1 613
18 TraesCS3A01G437900 chr1B 368677393 368677972 579 True 678.00 678 87.680 3 618 1 chr1B.!!$R1 615
19 TraesCS3A01G437900 chr7B 387826315 387826914 599 True 658.00 658 86.570 5 615 1 chr7B.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1009 0.249868 TTCAGTTCAGAGCACCGTGG 60.25 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2496 4114 0.033894 ACTCGAGGAGGAGGAAGGAC 60.034 60.0 18.41 0.0 38.39 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 3.782656 TTCTCCCTGTAGGTTTTGGTC 57.217 47.619 0.00 0.00 36.75 4.02
162 163 4.097892 TGGGCTTGTTCTTTGTTTCTTCTC 59.902 41.667 0.00 0.00 0.00 2.87
378 416 4.365723 AGCAAAAGACAACAGCAATTCAG 58.634 39.130 0.00 0.00 0.00 3.02
400 438 6.041409 TCAGAGTTTCAGATTCAGAGTGTTCT 59.959 38.462 0.00 0.00 0.00 3.01
462 500 2.038863 TGGTGTAGTGGTCATTCCCT 57.961 50.000 0.00 0.00 34.77 4.20
481 519 3.395941 CCCTCTTTGCCTCATATAGGGTT 59.604 47.826 0.00 0.00 46.65 4.11
675 716 5.503194 GCGCTTTATTGGCAAAGAAAACAAA 60.503 36.000 3.01 0.00 37.66 2.83
677 718 6.628461 CGCTTTATTGGCAAAGAAAACAAAAG 59.372 34.615 3.01 5.83 37.66 2.27
765 813 1.853319 CCGACACTTGCAACGAGTC 59.147 57.895 8.58 11.08 0.00 3.36
822 881 1.588404 CGACGCACATAATCACAGACC 59.412 52.381 0.00 0.00 0.00 3.85
874 933 2.293170 GGTCAGCCTAATTTCTGCCTC 58.707 52.381 0.00 0.00 0.00 4.70
905 964 4.094090 ACAAGAAGGACGACGAAGATAC 57.906 45.455 0.00 0.00 0.00 2.24
906 965 3.757493 ACAAGAAGGACGACGAAGATACT 59.243 43.478 0.00 0.00 0.00 2.12
907 966 4.142643 ACAAGAAGGACGACGAAGATACTC 60.143 45.833 0.00 0.00 0.00 2.59
908 967 2.608546 AGAAGGACGACGAAGATACTCG 59.391 50.000 0.00 0.00 44.50 4.18
923 982 7.909121 CGAAGATACTCGTATTATCATACCCAC 59.091 40.741 0.00 0.00 32.79 4.61
924 983 8.880991 AAGATACTCGTATTATCATACCCACT 57.119 34.615 0.00 0.00 32.79 4.00
926 985 8.740906 AGATACTCGTATTATCATACCCACTTG 58.259 37.037 0.00 0.00 32.79 3.16
940 999 3.068590 ACCCACTTGCAAATTCAGTTCAG 59.931 43.478 0.00 0.00 0.00 3.02
946 1005 2.294233 TGCAAATTCAGTTCAGAGCACC 59.706 45.455 0.00 0.00 0.00 5.01
948 1007 2.549754 CAAATTCAGTTCAGAGCACCGT 59.450 45.455 0.00 0.00 0.00 4.83
949 1008 1.800805 ATTCAGTTCAGAGCACCGTG 58.199 50.000 0.00 0.00 0.00 4.94
950 1009 0.249868 TTCAGTTCAGAGCACCGTGG 60.250 55.000 0.00 0.00 0.00 4.94
951 1010 1.069765 CAGTTCAGAGCACCGTGGT 59.930 57.895 2.07 2.07 0.00 4.16
952 1011 0.946221 CAGTTCAGAGCACCGTGGTC 60.946 60.000 20.73 20.73 44.62 4.02
953 1012 1.668151 GTTCAGAGCACCGTGGTCC 60.668 63.158 23.75 7.82 45.34 4.46
954 1013 1.837051 TTCAGAGCACCGTGGTCCT 60.837 57.895 23.75 10.94 45.34 3.85
955 1014 1.816863 TTCAGAGCACCGTGGTCCTC 61.817 60.000 23.75 10.98 45.34 3.71
956 1015 2.118513 AGAGCACCGTGGTCCTCT 59.881 61.111 23.75 6.67 45.34 3.69
957 1016 2.262915 GAGCACCGTGGTCCTCTG 59.737 66.667 18.17 0.00 38.84 3.35
1155 1220 3.003173 CTCCTCGCCTCCAACCCA 61.003 66.667 0.00 0.00 0.00 4.51
1322 1387 2.276493 CGCCTACGTCGACGACAG 60.276 66.667 41.52 32.67 43.02 3.51
1642 1707 2.892425 CGTCGCCCATCAAGAGCC 60.892 66.667 0.00 0.00 0.00 4.70
1663 1728 2.283388 TGGACTACGCCGGGAAGT 60.283 61.111 2.18 0.00 0.00 3.01
1718 1794 3.761752 GCCAACTAATTTAAGTGGCTGGA 59.238 43.478 17.12 0.00 39.02 3.86
1719 1795 4.219725 GCCAACTAATTTAAGTGGCTGGAA 59.780 41.667 17.12 0.00 39.02 3.53
1720 1796 5.622233 GCCAACTAATTTAAGTGGCTGGAAG 60.622 44.000 17.12 0.00 39.02 3.46
1721 1797 5.476945 CCAACTAATTTAAGTGGCTGGAAGT 59.523 40.000 0.00 0.00 35.30 3.01
1722 1798 6.015434 CCAACTAATTTAAGTGGCTGGAAGTT 60.015 38.462 0.00 0.00 35.30 2.66
1745 1821 2.041366 GAGCTTCTTGATTCGGCCGC 62.041 60.000 23.51 7.40 0.00 6.53
1747 1823 1.450312 CTTCTTGATTCGGCCGCCT 60.450 57.895 23.51 10.11 0.00 5.52
1748 1824 1.432270 CTTCTTGATTCGGCCGCCTC 61.432 60.000 23.51 19.51 0.00 4.70
1749 1825 3.264897 CTTGATTCGGCCGCCTCG 61.265 66.667 23.51 3.85 0.00 4.63
1757 1857 2.202756 GGCCGCCTCGAACTAGTG 60.203 66.667 0.71 0.00 0.00 2.74
1766 1866 4.733887 CGCCTCGAACTAGTGTAAACATAG 59.266 45.833 0.00 0.00 0.00 2.23
1809 3416 6.701400 ACAAACAGAGTTCACAATAAAATGGC 59.299 34.615 0.00 0.00 0.00 4.40
1815 3422 6.875195 AGAGTTCACAATAAAATGGCCATTTG 59.125 34.615 37.84 29.11 40.57 2.32
2002 3613 5.240623 ACAAGTTCAAGCGATTTGGAATACA 59.759 36.000 0.00 0.00 37.39 2.29
2025 3638 2.344950 CAACTTCTGAGCTAGCAGTGG 58.655 52.381 18.83 4.76 33.01 4.00
2028 3641 2.634940 ACTTCTGAGCTAGCAGTGGAAA 59.365 45.455 18.83 2.52 31.41 3.13
2029 3642 2.751166 TCTGAGCTAGCAGTGGAAAC 57.249 50.000 18.83 0.00 37.20 2.78
2069 3683 4.698304 TGGTTAACCGTTGATGAGAAATCC 59.302 41.667 19.65 0.00 39.43 3.01
2070 3684 4.201783 GGTTAACCGTTGATGAGAAATCCG 60.202 45.833 9.34 0.00 0.00 4.18
2085 3699 1.213296 ATCCGACAAACTAGGCCCAT 58.787 50.000 0.00 0.00 0.00 4.00
2132 3748 6.894828 TCACTAAATTTTGACTTAAGCCGAC 58.105 36.000 6.63 0.00 0.00 4.79
2134 3750 5.766174 ACTAAATTTTGACTTAAGCCGACCA 59.234 36.000 6.63 0.00 0.00 4.02
2157 3775 4.340076 CTCAGCTAGCATGCTCCG 57.660 61.111 26.57 17.64 41.98 4.63
2158 3776 1.440893 CTCAGCTAGCATGCTCCGT 59.559 57.895 26.57 6.63 41.98 4.69
2160 3778 1.039785 TCAGCTAGCATGCTCCGTCT 61.040 55.000 26.57 13.79 41.98 4.18
2161 3779 0.875040 CAGCTAGCATGCTCCGTCTG 60.875 60.000 26.57 20.91 41.98 3.51
2162 3780 1.142748 GCTAGCATGCTCCGTCTGT 59.857 57.895 26.57 0.00 0.00 3.41
2167 3785 1.215382 CATGCTCCGTCTGTCCGAA 59.785 57.895 0.00 0.00 0.00 4.30
2178 3796 2.344741 GTCTGTCCGAATTACTTGTCGC 59.655 50.000 0.00 0.00 35.93 5.19
2179 3797 2.029739 TCTGTCCGAATTACTTGTCGCA 60.030 45.455 0.00 0.00 35.93 5.10
2180 3798 2.063266 TGTCCGAATTACTTGTCGCAC 58.937 47.619 0.00 0.00 35.93 5.34
2181 3799 2.063266 GTCCGAATTACTTGTCGCACA 58.937 47.619 0.00 0.00 35.93 4.57
2182 3800 2.477375 GTCCGAATTACTTGTCGCACAA 59.523 45.455 2.49 2.49 36.54 3.33
2183 3801 3.059461 GTCCGAATTACTTGTCGCACAAA 60.059 43.478 3.84 0.00 37.69 2.83
2184 3802 3.749088 TCCGAATTACTTGTCGCACAAAT 59.251 39.130 3.84 0.00 37.69 2.32
2185 3803 4.930405 TCCGAATTACTTGTCGCACAAATA 59.070 37.500 3.84 0.00 37.69 1.40
2186 3804 5.062934 TCCGAATTACTTGTCGCACAAATAG 59.937 40.000 3.84 0.00 37.69 1.73
2189 3807 6.624917 CGAATTACTTGTCGCACAAATAGATG 59.375 38.462 3.84 0.00 37.69 2.90
2190 3808 6.985188 ATTACTTGTCGCACAAATAGATGT 57.015 33.333 3.84 1.02 37.69 3.06
2241 3859 5.563751 CGTTCATTATTATTCATTTCCGCGG 59.436 40.000 22.12 22.12 0.00 6.46
2245 3863 2.842208 TTATTCATTTCCGCGGCAAG 57.158 45.000 23.51 10.39 0.00 4.01
2252 3870 1.524848 TTTCCGCGGCAAGTAATTCA 58.475 45.000 23.51 0.00 0.00 2.57
2259 3877 2.343101 CGGCAAGTAATTCAGGACGAA 58.657 47.619 0.00 0.00 38.22 3.85
2261 3879 2.678336 GGCAAGTAATTCAGGACGAAGG 59.322 50.000 0.00 0.00 36.95 3.46
2262 3880 2.678336 GCAAGTAATTCAGGACGAAGGG 59.322 50.000 0.00 0.00 36.95 3.95
2263 3881 3.270877 CAAGTAATTCAGGACGAAGGGG 58.729 50.000 0.00 0.00 36.95 4.79
2264 3882 1.838077 AGTAATTCAGGACGAAGGGGG 59.162 52.381 0.00 0.00 36.95 5.40
2276 3894 4.385532 GGACGAAGGGGGTATTATTTTCCA 60.386 45.833 0.00 0.00 0.00 3.53
2279 3897 4.765339 CGAAGGGGGTATTATTTTCCATCC 59.235 45.833 0.00 0.00 0.00 3.51
2280 3898 4.382386 AGGGGGTATTATTTTCCATCCG 57.618 45.455 0.00 0.00 0.00 4.18
2281 3899 3.725267 AGGGGGTATTATTTTCCATCCGT 59.275 43.478 0.00 0.00 0.00 4.69
2285 3903 6.301486 GGGGTATTATTTTCCATCCGTACTT 58.699 40.000 0.00 0.00 0.00 2.24
2286 3904 6.206048 GGGGTATTATTTTCCATCCGTACTTG 59.794 42.308 0.00 0.00 0.00 3.16
2294 3912 2.093658 TCCATCCGTACTTGCCTCTTTC 60.094 50.000 0.00 0.00 0.00 2.62
2302 3920 2.526432 ACTTGCCTCTTTCCGTCTCTA 58.474 47.619 0.00 0.00 0.00 2.43
2303 3921 2.897969 ACTTGCCTCTTTCCGTCTCTAA 59.102 45.455 0.00 0.00 0.00 2.10
2309 3927 4.443621 CCTCTTTCCGTCTCTAAATTCCC 58.556 47.826 0.00 0.00 0.00 3.97
2316 3934 5.213519 TCCGTCTCTAAATTCCCCTTGATA 58.786 41.667 0.00 0.00 0.00 2.15
2331 3949 4.129380 CCTTGATATGATCGAGCCAACAA 58.871 43.478 0.00 0.00 39.10 2.83
2344 3962 2.724520 CAACAAAGAGGTGGCAGCT 58.275 52.632 20.74 20.74 0.00 4.24
2359 3977 3.009033 TGGCAGCTATAGTTGGTGACTTT 59.991 43.478 17.14 0.00 41.13 2.66
2363 3981 4.327357 CAGCTATAGTTGGTGACTTTGTCG 59.673 45.833 8.63 0.00 39.86 4.35
2365 3983 1.873698 TAGTTGGTGACTTTGTCGGC 58.126 50.000 0.00 0.00 39.86 5.54
2370 3988 0.949105 GGTGACTTTGTCGGCGATGT 60.949 55.000 14.79 10.15 34.95 3.06
2373 3991 0.163788 GACTTTGTCGGCGATGTGTG 59.836 55.000 14.79 5.61 0.00 3.82
2377 3995 2.595124 TTGTCGGCGATGTGTGATAT 57.405 45.000 14.79 0.00 0.00 1.63
2396 4014 2.446994 AGTGGTGGTGTCGGGGAA 60.447 61.111 0.00 0.00 0.00 3.97
2425 4043 1.308746 TCTCCCATCCCCCTTTCCC 60.309 63.158 0.00 0.00 0.00 3.97
2426 4044 2.287661 TCCCATCCCCCTTTCCCC 60.288 66.667 0.00 0.00 0.00 4.81
2427 4045 3.438812 CCCATCCCCCTTTCCCCC 61.439 72.222 0.00 0.00 0.00 5.40
2428 4046 2.620137 CCATCCCCCTTTCCCCCA 60.620 66.667 0.00 0.00 0.00 4.96
2429 4047 2.252898 CCATCCCCCTTTCCCCCAA 61.253 63.158 0.00 0.00 0.00 4.12
2430 4048 1.602675 CCATCCCCCTTTCCCCCAAT 61.603 60.000 0.00 0.00 0.00 3.16
2431 4049 1.240527 CATCCCCCTTTCCCCCAATA 58.759 55.000 0.00 0.00 0.00 1.90
2432 4050 1.578215 CATCCCCCTTTCCCCCAATAA 59.422 52.381 0.00 0.00 0.00 1.40
2433 4051 1.788197 TCCCCCTTTCCCCCAATAAA 58.212 50.000 0.00 0.00 0.00 1.40
2434 4052 2.090864 TCCCCCTTTCCCCCAATAAAA 58.909 47.619 0.00 0.00 0.00 1.52
2435 4053 2.459102 TCCCCCTTTCCCCCAATAAAAA 59.541 45.455 0.00 0.00 0.00 1.94
2459 4077 7.967890 AATTAAGCCATTTTCTTTGTCAAGG 57.032 32.000 0.00 0.00 0.00 3.61
2460 4078 4.341366 AAGCCATTTTCTTTGTCAAGGG 57.659 40.909 0.00 0.00 0.00 3.95
2461 4079 3.575805 AGCCATTTTCTTTGTCAAGGGA 58.424 40.909 0.00 0.00 0.00 4.20
2462 4080 3.966665 AGCCATTTTCTTTGTCAAGGGAA 59.033 39.130 0.00 0.00 0.00 3.97
2463 4081 4.594491 AGCCATTTTCTTTGTCAAGGGAAT 59.406 37.500 0.00 0.00 0.00 3.01
2464 4082 4.931601 GCCATTTTCTTTGTCAAGGGAATC 59.068 41.667 0.00 0.00 0.00 2.52
2465 4083 5.163513 CCATTTTCTTTGTCAAGGGAATCG 58.836 41.667 0.00 0.00 0.00 3.34
2466 4084 5.278957 CCATTTTCTTTGTCAAGGGAATCGT 60.279 40.000 0.00 0.00 0.00 3.73
2467 4085 5.432885 TTTTCTTTGTCAAGGGAATCGTC 57.567 39.130 0.00 0.00 0.00 4.20
2468 4086 3.053831 TCTTTGTCAAGGGAATCGTCC 57.946 47.619 0.00 0.00 44.10 4.79
2478 4096 2.205307 GGAATCGTCCCTCTGTAACG 57.795 55.000 0.00 0.00 38.08 3.18
2479 4097 1.475682 GGAATCGTCCCTCTGTAACGT 59.524 52.381 0.00 0.00 38.08 3.99
2480 4098 2.527100 GAATCGTCCCTCTGTAACGTG 58.473 52.381 0.00 0.00 37.64 4.49
2481 4099 0.172803 ATCGTCCCTCTGTAACGTGC 59.827 55.000 0.00 0.00 37.64 5.34
2482 4100 1.174078 TCGTCCCTCTGTAACGTGCA 61.174 55.000 0.00 0.00 37.64 4.57
2483 4101 0.108804 CGTCCCTCTGTAACGTGCAT 60.109 55.000 0.00 0.00 0.00 3.96
2484 4102 1.641577 GTCCCTCTGTAACGTGCATC 58.358 55.000 0.00 0.00 0.00 3.91
2485 4103 0.172578 TCCCTCTGTAACGTGCATCG 59.827 55.000 7.07 7.07 46.00 3.84
2495 4113 4.388499 GTGCATCGTCACCCCGGT 62.388 66.667 0.00 0.00 0.00 5.28
2496 4114 4.386951 TGCATCGTCACCCCGGTG 62.387 66.667 7.60 7.60 46.64 4.94
2497 4115 4.388499 GCATCGTCACCCCGGTGT 62.388 66.667 13.47 0.00 45.55 4.16
2498 4116 2.125673 CATCGTCACCCCGGTGTC 60.126 66.667 13.47 7.36 45.55 3.67
2499 4117 3.387947 ATCGTCACCCCGGTGTCC 61.388 66.667 13.47 5.23 45.55 4.02
2500 4118 3.899545 ATCGTCACCCCGGTGTCCT 62.900 63.158 13.47 0.00 45.55 3.85
2501 4119 3.622826 CGTCACCCCGGTGTCCTT 61.623 66.667 13.47 0.00 45.55 3.36
2502 4120 2.346365 GTCACCCCGGTGTCCTTC 59.654 66.667 13.47 0.00 45.55 3.46
2503 4121 2.926242 TCACCCCGGTGTCCTTCC 60.926 66.667 13.47 0.00 45.55 3.46
2504 4122 2.928396 CACCCCGGTGTCCTTCCT 60.928 66.667 5.66 0.00 40.91 3.36
2505 4123 2.606826 ACCCCGGTGTCCTTCCTC 60.607 66.667 0.00 0.00 0.00 3.71
2506 4124 3.400054 CCCCGGTGTCCTTCCTCC 61.400 72.222 0.00 0.00 0.00 4.30
2507 4125 2.284699 CCCGGTGTCCTTCCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
2508 4126 2.359967 CCCGGTGTCCTTCCTCCTC 61.360 68.421 0.00 0.00 0.00 3.71
2509 4127 2.359967 CCGGTGTCCTTCCTCCTCC 61.360 68.421 0.00 0.00 0.00 4.30
2510 4128 1.305381 CGGTGTCCTTCCTCCTCCT 60.305 63.158 0.00 0.00 0.00 3.69
2511 4129 1.324005 CGGTGTCCTTCCTCCTCCTC 61.324 65.000 0.00 0.00 0.00 3.71
2512 4130 1.324005 GGTGTCCTTCCTCCTCCTCG 61.324 65.000 0.00 0.00 0.00 4.63
2513 4131 0.323542 GTGTCCTTCCTCCTCCTCGA 60.324 60.000 0.00 0.00 0.00 4.04
2514 4132 0.033991 TGTCCTTCCTCCTCCTCGAG 60.034 60.000 5.13 5.13 0.00 4.04
2515 4133 0.033894 GTCCTTCCTCCTCCTCGAGT 60.034 60.000 12.31 0.00 0.00 4.18
2516 4134 0.033991 TCCTTCCTCCTCCTCGAGTG 60.034 60.000 12.31 3.02 0.00 3.51
2517 4135 1.040339 CCTTCCTCCTCCTCGAGTGG 61.040 65.000 12.31 13.07 0.00 4.00
2518 4136 0.033991 CTTCCTCCTCCTCGAGTGGA 60.034 60.000 19.17 19.17 36.68 4.02
2523 4141 2.888863 CTCCTCGAGTGGAGTGCC 59.111 66.667 12.31 0.00 46.33 5.01
2524 4142 1.979155 CTCCTCGAGTGGAGTGCCA 60.979 63.158 12.31 0.00 46.33 4.92
2532 4150 2.603473 TGGAGTGCCACCGCTACT 60.603 61.111 0.00 0.00 39.92 2.57
2533 4151 2.125512 GGAGTGCCACCGCTACTG 60.126 66.667 0.00 0.00 35.36 2.74
2534 4152 2.125512 GAGTGCCACCGCTACTGG 60.126 66.667 0.00 0.00 35.36 4.00
2535 4153 2.923035 AGTGCCACCGCTACTGGT 60.923 61.111 0.00 0.00 45.21 4.00
2536 4154 2.434359 GTGCCACCGCTACTGGTC 60.434 66.667 0.00 0.00 41.38 4.02
2537 4155 3.702048 TGCCACCGCTACTGGTCC 61.702 66.667 0.00 0.00 41.38 4.46
2538 4156 4.468689 GCCACCGCTACTGGTCCC 62.469 72.222 0.00 0.00 41.38 4.46
2539 4157 3.782443 CCACCGCTACTGGTCCCC 61.782 72.222 0.00 0.00 41.38 4.81
2540 4158 3.782443 CACCGCTACTGGTCCCCC 61.782 72.222 0.00 0.00 41.38 5.40
2556 4174 4.038804 CCCCTCCTCCTCCCCCAA 62.039 72.222 0.00 0.00 0.00 4.12
2557 4175 2.378522 CCCTCCTCCTCCCCCAAT 59.621 66.667 0.00 0.00 0.00 3.16
2558 4176 1.772156 CCCTCCTCCTCCCCCAATC 60.772 68.421 0.00 0.00 0.00 2.67
2559 4177 2.143419 CCTCCTCCTCCCCCAATCG 61.143 68.421 0.00 0.00 0.00 3.34
2560 4178 2.040884 TCCTCCTCCCCCAATCGG 60.041 66.667 0.00 0.00 0.00 4.18
2561 4179 2.366972 CCTCCTCCCCCAATCGGT 60.367 66.667 0.00 0.00 0.00 4.69
2562 4180 2.001269 CCTCCTCCCCCAATCGGTT 61.001 63.158 0.00 0.00 0.00 4.44
2563 4181 1.527370 CTCCTCCCCCAATCGGTTC 59.473 63.158 0.00 0.00 0.00 3.62
2564 4182 2.189521 CCTCCCCCAATCGGTTCG 59.810 66.667 0.00 0.00 0.00 3.95
2565 4183 2.363975 CCTCCCCCAATCGGTTCGA 61.364 63.158 0.00 0.00 41.13 3.71
2566 4184 1.600107 CTCCCCCAATCGGTTCGAA 59.400 57.895 0.00 0.00 39.99 3.71
2567 4185 0.035820 CTCCCCCAATCGGTTCGAAA 60.036 55.000 0.00 0.00 39.99 3.46
2568 4186 0.035820 TCCCCCAATCGGTTCGAAAG 60.036 55.000 0.00 0.00 39.99 2.62
2569 4187 1.029947 CCCCCAATCGGTTCGAAAGG 61.030 60.000 0.00 0.00 39.99 3.11
2570 4188 1.029947 CCCCAATCGGTTCGAAAGGG 61.030 60.000 17.69 17.69 46.37 3.95
2571 4189 1.654023 CCCAATCGGTTCGAAAGGGC 61.654 60.000 14.31 0.00 43.25 5.19
2572 4190 0.676782 CCAATCGGTTCGAAAGGGCT 60.677 55.000 0.00 0.00 39.99 5.19
2573 4191 1.406341 CCAATCGGTTCGAAAGGGCTA 60.406 52.381 0.00 0.00 39.99 3.93
2574 4192 2.561569 CAATCGGTTCGAAAGGGCTAT 58.438 47.619 0.00 0.00 39.99 2.97
2575 4193 3.493699 CCAATCGGTTCGAAAGGGCTATA 60.494 47.826 0.00 0.00 39.99 1.31
2576 4194 2.877043 TCGGTTCGAAAGGGCTATAC 57.123 50.000 0.00 0.00 31.06 1.47
2577 4195 1.410153 TCGGTTCGAAAGGGCTATACC 59.590 52.381 0.00 0.00 31.06 2.73
2578 4196 1.137479 CGGTTCGAAAGGGCTATACCA 59.863 52.381 0.00 0.00 42.05 3.25
2579 4197 2.224209 CGGTTCGAAAGGGCTATACCAT 60.224 50.000 0.00 0.00 42.05 3.55
2580 4198 3.743269 CGGTTCGAAAGGGCTATACCATT 60.743 47.826 0.00 0.00 46.80 3.16
2581 4199 3.564225 GGTTCGAAAGGGCTATACCATTG 59.436 47.826 0.00 0.00 43.08 2.82
2582 4200 4.448210 GTTCGAAAGGGCTATACCATTGA 58.552 43.478 0.00 0.00 43.08 2.57
2583 4201 4.974645 TCGAAAGGGCTATACCATTGAT 57.025 40.909 0.00 0.00 43.08 2.57
2584 4202 5.304686 TCGAAAGGGCTATACCATTGATT 57.695 39.130 0.00 0.00 43.08 2.57
2585 4203 5.305585 TCGAAAGGGCTATACCATTGATTC 58.694 41.667 0.00 0.00 43.08 2.52
2586 4204 5.063204 CGAAAGGGCTATACCATTGATTCA 58.937 41.667 0.00 0.00 43.08 2.57
2587 4205 5.530915 CGAAAGGGCTATACCATTGATTCAA 59.469 40.000 0.75 0.75 43.08 2.69
2588 4206 6.207417 CGAAAGGGCTATACCATTGATTCAAT 59.793 38.462 6.06 6.06 43.08 2.57
2589 4207 7.390440 CGAAAGGGCTATACCATTGATTCAATA 59.610 37.037 11.44 0.00 43.08 1.90
2590 4208 8.409358 AAAGGGCTATACCATTGATTCAATAC 57.591 34.615 11.44 0.00 43.08 1.89
2591 4209 7.090319 AGGGCTATACCATTGATTCAATACA 57.910 36.000 11.44 1.18 42.05 2.29
2592 4210 6.942576 AGGGCTATACCATTGATTCAATACAC 59.057 38.462 11.44 0.00 42.05 2.90
2593 4211 6.942576 GGGCTATACCATTGATTCAATACACT 59.057 38.462 11.44 1.34 42.05 3.55
2594 4212 7.094634 GGGCTATACCATTGATTCAATACACTG 60.095 40.741 11.44 1.22 42.05 3.66
2595 4213 7.445402 GGCTATACCATTGATTCAATACACTGT 59.555 37.037 11.44 7.09 38.86 3.55
2596 4214 8.840321 GCTATACCATTGATTCAATACACTGTT 58.160 33.333 11.44 0.00 32.35 3.16
2600 4218 8.635765 ACCATTGATTCAATACACTGTTTAGT 57.364 30.769 11.44 0.00 33.08 2.24
2601 4219 8.514594 ACCATTGATTCAATACACTGTTTAGTG 58.485 33.333 11.44 5.93 44.49 2.74
2614 4232 6.313744 ACTGTTTAGTGTGCCATAAGTTTC 57.686 37.500 0.00 0.00 35.34 2.78
2615 4233 5.825679 ACTGTTTAGTGTGCCATAAGTTTCA 59.174 36.000 0.00 0.00 35.34 2.69
2616 4234 6.320164 ACTGTTTAGTGTGCCATAAGTTTCAA 59.680 34.615 0.00 0.00 35.34 2.69
2617 4235 7.101652 TGTTTAGTGTGCCATAAGTTTCAAA 57.898 32.000 0.00 0.00 0.00 2.69
2618 4236 7.548097 TGTTTAGTGTGCCATAAGTTTCAAAA 58.452 30.769 0.00 0.00 0.00 2.44
2619 4237 8.200792 TGTTTAGTGTGCCATAAGTTTCAAAAT 58.799 29.630 0.00 0.00 0.00 1.82
2620 4238 9.685828 GTTTAGTGTGCCATAAGTTTCAAAATA 57.314 29.630 0.00 0.00 0.00 1.40
2623 4241 8.587952 AGTGTGCCATAAGTTTCAAAATAAAC 57.412 30.769 0.00 0.00 39.22 2.01
2624 4242 7.655732 AGTGTGCCATAAGTTTCAAAATAAACC 59.344 33.333 0.00 0.00 39.66 3.27
2625 4243 7.655732 GTGTGCCATAAGTTTCAAAATAAACCT 59.344 33.333 0.00 0.00 39.66 3.50
2626 4244 8.207545 TGTGCCATAAGTTTCAAAATAAACCTT 58.792 29.630 0.00 0.00 39.66 3.50
2627 4245 9.051679 GTGCCATAAGTTTCAAAATAAACCTTT 57.948 29.630 0.00 0.00 39.66 3.11
2628 4246 9.620259 TGCCATAAGTTTCAAAATAAACCTTTT 57.380 25.926 0.00 0.00 39.66 2.27
2629 4247 9.877137 GCCATAAGTTTCAAAATAAACCTTTTG 57.123 29.630 3.49 3.49 44.02 2.44
2646 4264 6.091123 CCTTTTGGTTCGACTCTTATTACG 57.909 41.667 0.00 0.00 34.07 3.18
2647 4265 5.636543 CCTTTTGGTTCGACTCTTATTACGT 59.363 40.000 0.00 0.00 34.07 3.57
2648 4266 6.808212 CCTTTTGGTTCGACTCTTATTACGTA 59.192 38.462 0.00 0.00 34.07 3.57
2649 4267 7.329226 CCTTTTGGTTCGACTCTTATTACGTAA 59.671 37.037 11.02 11.02 34.07 3.18
2650 4268 8.761575 TTTTGGTTCGACTCTTATTACGTAAT 57.238 30.769 23.36 23.36 0.00 1.89
2651 4269 9.853555 TTTTGGTTCGACTCTTATTACGTAATA 57.146 29.630 21.32 21.32 0.00 0.98
2665 4283 6.916401 TTACGTAATATTTCTATGCCGACG 57.084 37.500 3.29 0.00 0.00 5.12
2666 4284 3.671928 ACGTAATATTTCTATGCCGACGC 59.328 43.478 0.00 0.00 0.00 5.19
2687 4305 2.733956 AGTGCAAAACTGGGACAAAGA 58.266 42.857 0.00 0.00 38.70 2.52
2688 4306 3.096092 AGTGCAAAACTGGGACAAAGAA 58.904 40.909 0.00 0.00 38.70 2.52
2689 4307 3.513515 AGTGCAAAACTGGGACAAAGAAA 59.486 39.130 0.00 0.00 38.70 2.52
2690 4308 4.020662 AGTGCAAAACTGGGACAAAGAAAA 60.021 37.500 0.00 0.00 38.70 2.29
2691 4309 4.092821 GTGCAAAACTGGGACAAAGAAAAC 59.907 41.667 0.00 0.00 38.70 2.43
2692 4310 4.249661 GCAAAACTGGGACAAAGAAAACA 58.750 39.130 0.00 0.00 38.70 2.83
2693 4311 4.092821 GCAAAACTGGGACAAAGAAAACAC 59.907 41.667 0.00 0.00 38.70 3.32
2694 4312 5.233988 CAAAACTGGGACAAAGAAAACACA 58.766 37.500 0.00 0.00 38.70 3.72
2695 4313 4.450082 AACTGGGACAAAGAAAACACAC 57.550 40.909 0.00 0.00 38.70 3.82
2696 4314 3.426615 ACTGGGACAAAGAAAACACACA 58.573 40.909 0.00 0.00 38.70 3.72
2697 4315 3.829601 ACTGGGACAAAGAAAACACACAA 59.170 39.130 0.00 0.00 38.70 3.33
2698 4316 4.466015 ACTGGGACAAAGAAAACACACAAT 59.534 37.500 0.00 0.00 38.70 2.71
2699 4317 4.753233 TGGGACAAAGAAAACACACAATG 58.247 39.130 0.00 0.00 31.92 2.82
2700 4318 4.221703 TGGGACAAAGAAAACACACAATGT 59.778 37.500 0.00 0.00 38.59 2.71
2701 4319 5.419155 TGGGACAAAGAAAACACACAATGTA 59.581 36.000 0.00 0.00 36.03 2.29
2702 4320 5.746721 GGGACAAAGAAAACACACAATGTAC 59.253 40.000 0.00 0.00 42.31 2.90
2703 4321 6.405397 GGGACAAAGAAAACACACAATGTACT 60.405 38.462 0.00 0.00 42.31 2.73
2704 4322 6.691388 GGACAAAGAAAACACACAATGTACTC 59.309 38.462 0.00 0.00 42.31 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.261492 CAGTGAACTGTATGAATTCTAAAGCT 57.739 34.615 7.05 0.00 39.09 3.74
104 105 9.383519 TCTATAACTGAGATAAAAACTTGCCAG 57.616 33.333 0.00 0.00 0.00 4.85
162 163 0.101040 CAGAGAGAAGGCAGAGCTCG 59.899 60.000 8.37 4.60 33.98 5.03
378 416 6.481644 ACAAGAACACTCTGAATCTGAAACTC 59.518 38.462 0.00 0.00 30.03 3.01
400 438 2.806745 GCACAGGAACACTCTAGCACAA 60.807 50.000 0.00 0.00 0.00 3.33
462 500 6.731467 AGAAAAACCCTATATGAGGCAAAGA 58.269 36.000 0.00 0.00 45.17 2.52
481 519 9.646427 GTATCTAGAAAAGAGAGCTGAAGAAAA 57.354 33.333 0.00 0.00 37.74 2.29
619 660 6.929049 TGTTCAGAGTGATTACGAAGATGTTT 59.071 34.615 0.00 0.00 0.00 2.83
675 716 4.630894 TCAGTGTTTGACGAATTTGCTT 57.369 36.364 0.00 0.00 0.00 3.91
677 718 3.180387 GCTTCAGTGTTTGACGAATTTGC 59.820 43.478 0.00 0.00 34.94 3.68
749 797 1.853319 CCGACTCGTTGCAAGTGTC 59.147 57.895 0.00 7.81 0.00 3.67
799 847 0.390472 TGTGATTATGTGCGTCGCCA 60.390 50.000 15.88 12.61 0.00 5.69
874 933 8.624701 TCGTCGTCCTTCTTGTTAATTTATAG 57.375 34.615 0.00 0.00 0.00 1.31
905 964 5.538118 TGCAAGTGGGTATGATAATACGAG 58.462 41.667 0.00 0.00 0.00 4.18
906 965 5.538849 TGCAAGTGGGTATGATAATACGA 57.461 39.130 0.00 0.00 0.00 3.43
907 966 6.612247 TTTGCAAGTGGGTATGATAATACG 57.388 37.500 0.00 0.00 0.00 3.06
908 967 8.629158 TGAATTTGCAAGTGGGTATGATAATAC 58.371 33.333 0.00 0.00 0.00 1.89
915 974 4.789012 ACTGAATTTGCAAGTGGGTATG 57.211 40.909 0.00 0.00 0.00 2.39
918 977 3.030291 TGAACTGAATTTGCAAGTGGGT 58.970 40.909 0.00 0.00 0.00 4.51
919 978 3.318839 TCTGAACTGAATTTGCAAGTGGG 59.681 43.478 0.00 0.00 0.00 4.61
920 979 4.543692 CTCTGAACTGAATTTGCAAGTGG 58.456 43.478 0.00 0.00 0.00 4.00
923 982 3.979495 GTGCTCTGAACTGAATTTGCAAG 59.021 43.478 0.00 0.00 0.00 4.01
924 983 3.243501 GGTGCTCTGAACTGAATTTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
926 985 2.666619 CGGTGCTCTGAACTGAATTTGC 60.667 50.000 0.00 0.00 0.00 3.68
946 1005 1.066143 ACTATTTGCCAGAGGACCACG 60.066 52.381 0.00 0.00 0.00 4.94
948 1007 3.806949 AAACTATTTGCCAGAGGACCA 57.193 42.857 0.00 0.00 0.00 4.02
949 1008 5.007724 CGATTAAACTATTTGCCAGAGGACC 59.992 44.000 0.00 0.00 0.00 4.46
950 1009 5.504173 GCGATTAAACTATTTGCCAGAGGAC 60.504 44.000 0.00 0.00 0.00 3.85
951 1010 4.574828 GCGATTAAACTATTTGCCAGAGGA 59.425 41.667 0.00 0.00 0.00 3.71
952 1011 4.552767 CGCGATTAAACTATTTGCCAGAGG 60.553 45.833 0.00 0.00 0.00 3.69
953 1012 4.270084 TCGCGATTAAACTATTTGCCAGAG 59.730 41.667 3.71 0.00 0.00 3.35
954 1013 4.185394 TCGCGATTAAACTATTTGCCAGA 58.815 39.130 3.71 0.00 0.00 3.86
955 1014 4.270084 TCTCGCGATTAAACTATTTGCCAG 59.730 41.667 10.36 0.00 0.00 4.85
956 1015 4.185394 TCTCGCGATTAAACTATTTGCCA 58.815 39.130 10.36 0.00 0.00 4.92
957 1016 4.318831 CCTCTCGCGATTAAACTATTTGCC 60.319 45.833 10.36 0.00 0.00 4.52
1155 1220 2.032681 GGGACCTTCTTGCGCACT 59.967 61.111 11.12 0.00 0.00 4.40
1322 1387 0.671163 TAACATCGCGGTGACCAACC 60.671 55.000 28.98 0.00 46.60 3.77
1635 1700 2.853731 CGTAGTCCACTAGGCTCTTG 57.146 55.000 0.00 0.00 33.74 3.02
1642 1707 1.033746 TTCCCGGCGTAGTCCACTAG 61.034 60.000 6.01 0.00 0.00 2.57
1663 1728 3.089874 AGCCCAGATAGCCCGCAA 61.090 61.111 0.00 0.00 0.00 4.85
1701 1769 6.817765 TCAACTTCCAGCCACTTAAATTAG 57.182 37.500 0.00 0.00 0.00 1.73
1718 1794 4.453819 CCGAATCAAGAAGCTCTTCAACTT 59.546 41.667 11.69 0.83 41.84 2.66
1719 1795 3.999663 CCGAATCAAGAAGCTCTTCAACT 59.000 43.478 11.69 0.00 41.84 3.16
1720 1796 3.425492 GCCGAATCAAGAAGCTCTTCAAC 60.425 47.826 11.69 0.00 41.84 3.18
1721 1797 2.744202 GCCGAATCAAGAAGCTCTTCAA 59.256 45.455 11.69 0.00 41.84 2.69
1722 1798 2.350522 GCCGAATCAAGAAGCTCTTCA 58.649 47.619 11.69 0.00 41.84 3.02
1745 1821 6.205101 ACCTATGTTTACACTAGTTCGAGG 57.795 41.667 0.00 0.00 0.00 4.63
1747 1823 8.743085 ATCTACCTATGTTTACACTAGTTCGA 57.257 34.615 0.00 0.00 0.00 3.71
1748 1824 9.798994 AAATCTACCTATGTTTACACTAGTTCG 57.201 33.333 0.00 0.00 0.00 3.95
1792 1892 6.532826 ACAAATGGCCATTTTATTGTGAACT 58.467 32.000 35.89 12.56 38.84 3.01
1809 3416 6.482973 AGCCACAACTTTATCAAAACAAATGG 59.517 34.615 0.00 0.00 0.00 3.16
1815 3422 4.681483 GCTCAGCCACAACTTTATCAAAAC 59.319 41.667 0.00 0.00 0.00 2.43
1960 3571 7.339721 TGAACTTGTGGGTTTATGTTACTTTCA 59.660 33.333 0.00 0.00 0.00 2.69
2002 3613 0.318441 TGCTAGCTCAGAAGTTGCGT 59.682 50.000 17.23 0.00 0.00 5.24
2056 3670 5.874810 CCTAGTTTGTCGGATTTCTCATCAA 59.125 40.000 0.00 0.00 0.00 2.57
2069 3683 2.277084 GTACATGGGCCTAGTTTGTCG 58.723 52.381 4.53 0.00 0.00 4.35
2070 3684 2.026636 TGGTACATGGGCCTAGTTTGTC 60.027 50.000 4.53 0.00 0.00 3.18
2116 3732 4.138290 TCAATGGTCGGCTTAAGTCAAAA 58.862 39.130 8.01 0.00 0.00 2.44
2121 3737 1.279271 AGCTCAATGGTCGGCTTAAGT 59.721 47.619 4.02 0.00 0.00 2.24
2150 3766 0.537188 AATTCGGACAGACGGAGCAT 59.463 50.000 0.00 0.00 0.00 3.79
2151 3767 1.135199 GTAATTCGGACAGACGGAGCA 60.135 52.381 0.00 0.00 0.00 4.26
2157 3775 2.344741 GCGACAAGTAATTCGGACAGAC 59.655 50.000 0.00 0.00 35.73 3.51
2158 3776 2.029739 TGCGACAAGTAATTCGGACAGA 60.030 45.455 0.00 0.00 35.73 3.41
2160 3778 2.442212 TGCGACAAGTAATTCGGACA 57.558 45.000 0.00 0.00 35.73 4.02
2161 3779 2.782198 GTGCGACAAGTAATTCGGAC 57.218 50.000 0.00 0.00 46.87 4.79
2162 3780 2.442212 TGTGCGACAAGTAATTCGGA 57.558 45.000 0.00 0.00 35.73 4.55
2167 3785 6.775088 CACATCTATTTGTGCGACAAGTAAT 58.225 36.000 0.00 0.00 39.53 1.89
2213 3831 9.262472 GCGGAAATGAATAATAATGAACGTATC 57.738 33.333 0.00 0.00 0.00 2.24
2214 3832 7.955324 CGCGGAAATGAATAATAATGAACGTAT 59.045 33.333 0.00 0.00 0.00 3.06
2215 3833 7.285069 CGCGGAAATGAATAATAATGAACGTA 58.715 34.615 0.00 0.00 0.00 3.57
2216 3834 6.133392 CGCGGAAATGAATAATAATGAACGT 58.867 36.000 0.00 0.00 0.00 3.99
2217 3835 5.563751 CCGCGGAAATGAATAATAATGAACG 59.436 40.000 24.07 0.00 0.00 3.95
2218 3836 5.342259 GCCGCGGAAATGAATAATAATGAAC 59.658 40.000 33.48 0.00 0.00 3.18
2219 3837 5.009110 TGCCGCGGAAATGAATAATAATGAA 59.991 36.000 33.48 0.00 0.00 2.57
2220 3838 4.517075 TGCCGCGGAAATGAATAATAATGA 59.483 37.500 33.48 0.00 0.00 2.57
2221 3839 4.793071 TGCCGCGGAAATGAATAATAATG 58.207 39.130 33.48 0.00 0.00 1.90
2222 3840 5.009610 ACTTGCCGCGGAAATGAATAATAAT 59.990 36.000 33.48 0.00 0.00 1.28
2223 3841 4.336993 ACTTGCCGCGGAAATGAATAATAA 59.663 37.500 33.48 0.00 0.00 1.40
2224 3842 3.880490 ACTTGCCGCGGAAATGAATAATA 59.120 39.130 33.48 0.00 0.00 0.98
2225 3843 2.687935 ACTTGCCGCGGAAATGAATAAT 59.312 40.909 33.48 1.00 0.00 1.28
2226 3844 2.088423 ACTTGCCGCGGAAATGAATAA 58.912 42.857 33.48 0.00 0.00 1.40
2227 3845 1.745232 ACTTGCCGCGGAAATGAATA 58.255 45.000 33.48 0.00 0.00 1.75
2228 3846 1.745232 TACTTGCCGCGGAAATGAAT 58.255 45.000 33.48 13.25 0.00 2.57
2229 3847 1.524848 TTACTTGCCGCGGAAATGAA 58.475 45.000 33.48 18.80 0.00 2.57
2230 3848 1.745232 ATTACTTGCCGCGGAAATGA 58.255 45.000 33.48 13.11 0.00 2.57
2231 3849 2.159448 TGAATTACTTGCCGCGGAAATG 60.159 45.455 33.48 20.69 0.00 2.32
2236 3854 0.742990 TCCTGAATTACTTGCCGCGG 60.743 55.000 24.05 24.05 0.00 6.46
2237 3855 0.373716 GTCCTGAATTACTTGCCGCG 59.626 55.000 0.00 0.00 0.00 6.46
2241 3859 2.678336 CCCTTCGTCCTGAATTACTTGC 59.322 50.000 0.00 0.00 35.63 4.01
2245 3863 1.558294 ACCCCCTTCGTCCTGAATTAC 59.442 52.381 0.00 0.00 35.63 1.89
2252 3870 4.141321 GGAAAATAATACCCCCTTCGTCCT 60.141 45.833 0.00 0.00 0.00 3.85
2259 3877 3.725267 ACGGATGGAAAATAATACCCCCT 59.275 43.478 0.00 0.00 0.00 4.79
2261 3879 5.872963 AGTACGGATGGAAAATAATACCCC 58.127 41.667 0.00 0.00 0.00 4.95
2262 3880 6.293790 GCAAGTACGGATGGAAAATAATACCC 60.294 42.308 0.00 0.00 0.00 3.69
2263 3881 6.293790 GGCAAGTACGGATGGAAAATAATACC 60.294 42.308 0.00 0.00 0.00 2.73
2264 3882 6.485648 AGGCAAGTACGGATGGAAAATAATAC 59.514 38.462 0.00 0.00 0.00 1.89
2276 3894 1.134788 CGGAAAGAGGCAAGTACGGAT 60.135 52.381 0.00 0.00 0.00 4.18
2279 3897 1.067776 AGACGGAAAGAGGCAAGTACG 60.068 52.381 0.00 0.00 0.00 3.67
2280 3898 2.231721 AGAGACGGAAAGAGGCAAGTAC 59.768 50.000 0.00 0.00 0.00 2.73
2281 3899 2.526432 AGAGACGGAAAGAGGCAAGTA 58.474 47.619 0.00 0.00 0.00 2.24
2285 3903 4.504858 GAATTTAGAGACGGAAAGAGGCA 58.495 43.478 0.00 0.00 0.00 4.75
2286 3904 3.872182 GGAATTTAGAGACGGAAAGAGGC 59.128 47.826 0.00 0.00 0.00 4.70
2294 3912 3.906720 TCAAGGGGAATTTAGAGACGG 57.093 47.619 0.00 0.00 0.00 4.79
2302 3920 5.006386 GCTCGATCATATCAAGGGGAATTT 58.994 41.667 0.00 0.00 0.00 1.82
2303 3921 4.566488 GGCTCGATCATATCAAGGGGAATT 60.566 45.833 0.00 0.00 0.00 2.17
2309 3927 3.732212 TGTTGGCTCGATCATATCAAGG 58.268 45.455 0.00 0.00 0.00 3.61
2316 3934 2.026822 ACCTCTTTGTTGGCTCGATCAT 60.027 45.455 0.00 0.00 0.00 2.45
2331 3949 2.171448 CCAACTATAGCTGCCACCTCTT 59.829 50.000 0.00 0.00 0.00 2.85
2344 3962 3.592059 GCCGACAAAGTCACCAACTATA 58.408 45.455 0.00 0.00 37.17 1.31
2359 3977 1.407258 TCATATCACACATCGCCGACA 59.593 47.619 0.00 0.00 0.00 4.35
2363 3981 2.138320 CCACTCATATCACACATCGCC 58.862 52.381 0.00 0.00 0.00 5.54
2365 3983 3.126073 CCACCACTCATATCACACATCG 58.874 50.000 0.00 0.00 0.00 3.84
2370 3988 2.094234 CGACACCACCACTCATATCACA 60.094 50.000 0.00 0.00 0.00 3.58
2373 3991 1.202533 CCCGACACCACCACTCATATC 60.203 57.143 0.00 0.00 0.00 1.63
2377 3995 3.238497 CCCCGACACCACCACTCA 61.238 66.667 0.00 0.00 0.00 3.41
2433 4051 8.839343 CCTTGACAAAGAAAATGGCTTAATTTT 58.161 29.630 5.40 5.40 41.34 1.82
2434 4052 7.445096 CCCTTGACAAAGAAAATGGCTTAATTT 59.555 33.333 0.00 0.00 35.19 1.82
2435 4053 6.936335 CCCTTGACAAAGAAAATGGCTTAATT 59.064 34.615 0.00 0.00 35.19 1.40
2436 4054 6.269769 TCCCTTGACAAAGAAAATGGCTTAAT 59.730 34.615 0.00 0.00 35.19 1.40
2437 4055 5.600484 TCCCTTGACAAAGAAAATGGCTTAA 59.400 36.000 0.00 0.00 35.19 1.85
2438 4056 5.144100 TCCCTTGACAAAGAAAATGGCTTA 58.856 37.500 0.00 0.00 35.19 3.09
2439 4057 3.966665 TCCCTTGACAAAGAAAATGGCTT 59.033 39.130 0.00 0.00 35.19 4.35
2440 4058 3.575805 TCCCTTGACAAAGAAAATGGCT 58.424 40.909 0.00 0.00 35.19 4.75
2441 4059 4.335400 TTCCCTTGACAAAGAAAATGGC 57.665 40.909 0.00 0.00 35.19 4.40
2442 4060 5.163513 CGATTCCCTTGACAAAGAAAATGG 58.836 41.667 4.84 0.00 35.19 3.16
2443 4061 5.772521 ACGATTCCCTTGACAAAGAAAATG 58.227 37.500 4.84 2.01 35.19 2.32
2444 4062 5.048013 GGACGATTCCCTTGACAAAGAAAAT 60.048 40.000 4.84 0.00 35.57 1.82
2445 4063 4.277423 GGACGATTCCCTTGACAAAGAAAA 59.723 41.667 4.84 0.00 35.57 2.29
2446 4064 3.818773 GGACGATTCCCTTGACAAAGAAA 59.181 43.478 4.84 0.00 35.57 2.52
2447 4065 3.408634 GGACGATTCCCTTGACAAAGAA 58.591 45.455 0.00 3.50 35.57 2.52
2448 4066 3.053831 GGACGATTCCCTTGACAAAGA 57.946 47.619 0.00 0.00 35.57 2.52
2459 4077 1.475682 ACGTTACAGAGGGACGATTCC 59.524 52.381 1.90 0.00 41.95 3.01
2460 4078 2.527100 CACGTTACAGAGGGACGATTC 58.473 52.381 1.90 0.00 39.85 2.52
2461 4079 1.403780 GCACGTTACAGAGGGACGATT 60.404 52.381 1.90 0.00 39.85 3.34
2462 4080 0.172803 GCACGTTACAGAGGGACGAT 59.827 55.000 1.90 0.00 39.85 3.73
2463 4081 1.174078 TGCACGTTACAGAGGGACGA 61.174 55.000 1.90 0.00 39.85 4.20
2464 4082 0.108804 ATGCACGTTACAGAGGGACG 60.109 55.000 0.00 0.00 42.13 4.79
2465 4083 1.641577 GATGCACGTTACAGAGGGAC 58.358 55.000 0.00 0.00 0.00 4.46
2466 4084 0.172578 CGATGCACGTTACAGAGGGA 59.827 55.000 0.00 0.00 37.22 4.20
2467 4085 2.665777 CGATGCACGTTACAGAGGG 58.334 57.895 0.00 0.00 37.22 4.30
2478 4096 4.388499 ACCGGGGTGACGATGCAC 62.388 66.667 6.32 0.00 38.05 4.57
2488 4106 2.606826 GAGGAAGGACACCGGGGT 60.607 66.667 10.56 10.56 0.00 4.95
2489 4107 3.400054 GGAGGAAGGACACCGGGG 61.400 72.222 0.00 0.00 0.00 5.73
2490 4108 2.284699 AGGAGGAAGGACACCGGG 60.285 66.667 6.32 0.00 0.00 5.73
2491 4109 2.359967 GGAGGAGGAAGGACACCGG 61.360 68.421 0.00 0.00 0.00 5.28
2492 4110 1.305381 AGGAGGAGGAAGGACACCG 60.305 63.158 0.00 0.00 0.00 4.94
2493 4111 1.324005 CGAGGAGGAGGAAGGACACC 61.324 65.000 0.00 0.00 0.00 4.16
2494 4112 0.323542 TCGAGGAGGAGGAAGGACAC 60.324 60.000 0.00 0.00 0.00 3.67
2495 4113 0.033991 CTCGAGGAGGAGGAAGGACA 60.034 60.000 3.91 0.00 0.00 4.02
2496 4114 0.033894 ACTCGAGGAGGAGGAAGGAC 60.034 60.000 18.41 0.00 38.39 3.85
2497 4115 0.033991 CACTCGAGGAGGAGGAAGGA 60.034 60.000 18.41 0.00 38.39 3.36
2498 4116 1.040339 CCACTCGAGGAGGAGGAAGG 61.040 65.000 18.41 0.53 38.39 3.46
2499 4117 0.033991 TCCACTCGAGGAGGAGGAAG 60.034 60.000 20.91 0.03 35.90 3.46
2500 4118 2.084596 TCCACTCGAGGAGGAGGAA 58.915 57.895 20.91 3.57 35.90 3.36
2501 4119 3.836617 TCCACTCGAGGAGGAGGA 58.163 61.111 20.91 14.42 38.39 3.71
2507 4125 2.117423 TGGCACTCCACTCGAGGA 59.883 61.111 18.41 5.20 43.57 3.71
2515 4133 2.603473 AGTAGCGGTGGCACTCCA 60.603 61.111 18.45 0.00 43.09 3.86
2516 4134 2.125512 CAGTAGCGGTGGCACTCC 60.126 66.667 18.45 8.70 43.41 3.85
2517 4135 2.125512 CCAGTAGCGGTGGCACTC 60.126 66.667 18.45 9.81 43.41 3.51
2518 4136 2.923035 ACCAGTAGCGGTGGCACT 60.923 61.111 18.45 0.00 43.41 4.40
2519 4137 2.434359 GACCAGTAGCGGTGGCAC 60.434 66.667 9.70 9.70 40.22 5.01
2520 4138 3.702048 GGACCAGTAGCGGTGGCA 61.702 66.667 0.00 0.00 40.22 4.92
2521 4139 4.468689 GGGACCAGTAGCGGTGGC 62.469 72.222 0.00 0.00 40.22 5.01
2539 4157 3.369161 ATTGGGGGAGGAGGAGGGG 62.369 68.421 0.00 0.00 0.00 4.79
2540 4158 1.772156 GATTGGGGGAGGAGGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
2541 4159 2.143419 CGATTGGGGGAGGAGGAGG 61.143 68.421 0.00 0.00 0.00 4.30
2542 4160 2.143419 CCGATTGGGGGAGGAGGAG 61.143 68.421 0.00 0.00 0.00 3.69
2543 4161 2.040884 CCGATTGGGGGAGGAGGA 60.041 66.667 0.00 0.00 0.00 3.71
2544 4162 1.984288 GAACCGATTGGGGGAGGAGG 61.984 65.000 3.39 0.00 41.60 4.30
2545 4163 1.527370 GAACCGATTGGGGGAGGAG 59.473 63.158 3.39 0.00 41.60 3.69
2546 4164 2.363975 CGAACCGATTGGGGGAGGA 61.364 63.158 3.39 0.00 41.60 3.71
2547 4165 1.906105 TTCGAACCGATTGGGGGAGG 61.906 60.000 3.39 0.00 41.60 4.30
2548 4166 0.035820 TTTCGAACCGATTGGGGGAG 60.036 55.000 3.39 0.00 41.60 4.30
2549 4167 0.035820 CTTTCGAACCGATTGGGGGA 60.036 55.000 3.39 0.00 41.60 4.81
2550 4168 1.029947 CCTTTCGAACCGATTGGGGG 61.030 60.000 3.39 0.00 41.60 5.40
2551 4169 1.029947 CCCTTTCGAACCGATTGGGG 61.030 60.000 3.39 11.10 41.50 4.96
2552 4170 1.654023 GCCCTTTCGAACCGATTGGG 61.654 60.000 17.03 17.03 44.97 4.12
2553 4171 0.676782 AGCCCTTTCGAACCGATTGG 60.677 55.000 0.00 0.00 42.84 3.16
2554 4172 2.018542 TAGCCCTTTCGAACCGATTG 57.981 50.000 0.00 0.00 35.23 2.67
2555 4173 3.493873 GGTATAGCCCTTTCGAACCGATT 60.494 47.826 0.00 0.00 35.23 3.34
2556 4174 2.036862 GGTATAGCCCTTTCGAACCGAT 59.963 50.000 0.00 0.00 35.23 4.18
2557 4175 1.410153 GGTATAGCCCTTTCGAACCGA 59.590 52.381 0.00 0.00 0.00 4.69
2558 4176 1.137479 TGGTATAGCCCTTTCGAACCG 59.863 52.381 0.00 0.00 36.04 4.44
2559 4177 2.994186 TGGTATAGCCCTTTCGAACC 57.006 50.000 0.00 0.00 36.04 3.62
2560 4178 4.448210 TCAATGGTATAGCCCTTTCGAAC 58.552 43.478 0.00 0.00 36.04 3.95
2561 4179 4.764050 TCAATGGTATAGCCCTTTCGAA 57.236 40.909 0.00 0.00 36.04 3.71
2562 4180 4.974645 ATCAATGGTATAGCCCTTTCGA 57.025 40.909 0.00 0.00 36.04 3.71
2563 4181 5.063204 TGAATCAATGGTATAGCCCTTTCG 58.937 41.667 0.00 0.00 36.04 3.46
2564 4182 6.959639 TTGAATCAATGGTATAGCCCTTTC 57.040 37.500 0.00 0.00 36.04 2.62
2565 4183 8.004215 TGTATTGAATCAATGGTATAGCCCTTT 58.996 33.333 17.93 0.00 35.54 3.11
2566 4184 7.448469 GTGTATTGAATCAATGGTATAGCCCTT 59.552 37.037 17.93 0.00 35.54 3.95
2567 4185 6.942576 GTGTATTGAATCAATGGTATAGCCCT 59.057 38.462 17.93 0.00 35.54 5.19
2568 4186 6.942576 AGTGTATTGAATCAATGGTATAGCCC 59.057 38.462 17.93 0.00 35.54 5.19
2569 4187 7.445402 ACAGTGTATTGAATCAATGGTATAGCC 59.555 37.037 17.93 0.00 35.54 3.93
2570 4188 8.383318 ACAGTGTATTGAATCAATGGTATAGC 57.617 34.615 17.93 0.00 35.54 2.97
2574 4192 9.733556 ACTAAACAGTGTATTGAATCAATGGTA 57.266 29.630 17.93 2.18 35.54 3.25
2575 4193 8.514594 CACTAAACAGTGTATTGAATCAATGGT 58.485 33.333 17.93 0.00 35.54 3.55
2576 4194 8.900511 CACTAAACAGTGTATTGAATCAATGG 57.099 34.615 17.93 5.55 35.54 3.16
2597 4215 9.685828 GTTTATTTTGAAACTTATGGCACACTA 57.314 29.630 0.00 0.00 37.48 2.74
2598 4216 7.655732 GGTTTATTTTGAAACTTATGGCACACT 59.344 33.333 0.00 0.00 39.31 3.55
2599 4217 7.655732 AGGTTTATTTTGAAACTTATGGCACAC 59.344 33.333 0.00 0.00 39.31 3.82
2600 4218 7.731054 AGGTTTATTTTGAAACTTATGGCACA 58.269 30.769 0.00 0.00 40.17 4.57
2601 4219 8.601845 AAGGTTTATTTTGAAACTTATGGCAC 57.398 30.769 0.00 0.00 38.97 5.01
2602 4220 9.620259 AAAAGGTTTATTTTGAAACTTATGGCA 57.380 25.926 0.00 0.00 38.97 4.92
2614 4232 7.200455 AGAGTCGAACCAAAAGGTTTATTTTG 58.800 34.615 0.92 5.21 45.55 2.44
2615 4233 7.342769 AGAGTCGAACCAAAAGGTTTATTTT 57.657 32.000 0.92 0.00 32.65 1.82
2616 4234 6.954487 AGAGTCGAACCAAAAGGTTTATTT 57.046 33.333 0.92 0.00 31.71 1.40
2617 4235 6.954487 AAGAGTCGAACCAAAAGGTTTATT 57.046 33.333 0.92 0.00 31.71 1.40
2618 4236 8.631480 AATAAGAGTCGAACCAAAAGGTTTAT 57.369 30.769 0.92 0.00 31.71 1.40
2619 4237 8.992073 GTAATAAGAGTCGAACCAAAAGGTTTA 58.008 33.333 0.92 0.00 31.71 2.01
2620 4238 6.954487 AATAAGAGTCGAACCAAAAGGTTT 57.046 33.333 0.92 0.00 31.71 3.27
2621 4239 6.146673 CGTAATAAGAGTCGAACCAAAAGGTT 59.853 38.462 0.00 0.00 34.52 3.50
2622 4240 5.636543 CGTAATAAGAGTCGAACCAAAAGGT 59.363 40.000 0.00 0.00 0.00 3.50
2623 4241 5.636543 ACGTAATAAGAGTCGAACCAAAAGG 59.363 40.000 0.00 0.00 0.00 3.11
2624 4242 6.701432 ACGTAATAAGAGTCGAACCAAAAG 57.299 37.500 0.00 0.00 0.00 2.27
2625 4243 8.761575 ATTACGTAATAAGAGTCGAACCAAAA 57.238 30.769 19.05 0.00 0.00 2.44
2639 4257 9.064804 CGTCGGCATAGAAATATTACGTAATAA 57.935 33.333 27.00 13.90 32.45 1.40
2640 4258 7.218773 GCGTCGGCATAGAAATATTACGTAATA 59.781 37.037 25.84 25.84 39.62 0.98
2641 4259 6.034256 GCGTCGGCATAGAAATATTACGTAAT 59.966 38.462 23.36 23.36 39.62 1.89
2642 4260 5.343058 GCGTCGGCATAGAAATATTACGTAA 59.657 40.000 11.02 11.02 39.62 3.18
2643 4261 4.853196 GCGTCGGCATAGAAATATTACGTA 59.147 41.667 0.00 0.00 39.62 3.57
2644 4262 3.671928 GCGTCGGCATAGAAATATTACGT 59.328 43.478 0.00 0.00 39.62 3.57
2645 4263 3.671459 TGCGTCGGCATAGAAATATTACG 59.329 43.478 0.00 0.00 46.21 3.18
2659 4277 2.725815 GTTTTGCACTGCGTCGGC 60.726 61.111 0.00 0.00 40.52 5.54
2660 4278 1.369209 CAGTTTTGCACTGCGTCGG 60.369 57.895 0.00 0.00 46.70 4.79
2661 4279 4.194312 CAGTTTTGCACTGCGTCG 57.806 55.556 0.00 0.00 46.70 5.12
2667 4285 2.733956 TCTTTGTCCCAGTTTTGCACT 58.266 42.857 0.00 0.00 35.35 4.40
2668 4286 3.518634 TTCTTTGTCCCAGTTTTGCAC 57.481 42.857 0.00 0.00 0.00 4.57
2669 4287 4.249661 GTTTTCTTTGTCCCAGTTTTGCA 58.750 39.130 0.00 0.00 0.00 4.08
2670 4288 4.092821 GTGTTTTCTTTGTCCCAGTTTTGC 59.907 41.667 0.00 0.00 0.00 3.68
2671 4289 5.120053 GTGTGTTTTCTTTGTCCCAGTTTTG 59.880 40.000 0.00 0.00 0.00 2.44
2672 4290 5.221541 TGTGTGTTTTCTTTGTCCCAGTTTT 60.222 36.000 0.00 0.00 0.00 2.43
2673 4291 4.282195 TGTGTGTTTTCTTTGTCCCAGTTT 59.718 37.500 0.00 0.00 0.00 2.66
2674 4292 3.829601 TGTGTGTTTTCTTTGTCCCAGTT 59.170 39.130 0.00 0.00 0.00 3.16
2675 4293 3.426615 TGTGTGTTTTCTTTGTCCCAGT 58.573 40.909 0.00 0.00 0.00 4.00
2676 4294 4.448537 TTGTGTGTTTTCTTTGTCCCAG 57.551 40.909 0.00 0.00 0.00 4.45
2677 4295 4.221703 ACATTGTGTGTTTTCTTTGTCCCA 59.778 37.500 0.00 0.00 38.01 4.37
2678 4296 4.754322 ACATTGTGTGTTTTCTTTGTCCC 58.246 39.130 0.00 0.00 38.01 4.46
2679 4297 6.560711 AGTACATTGTGTGTTTTCTTTGTCC 58.439 36.000 0.00 0.00 42.29 4.02
2680 4298 7.665080 GAGTACATTGTGTGTTTTCTTTGTC 57.335 36.000 0.00 0.00 42.29 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.