Multiple sequence alignment - TraesCS3A01G437700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G437700 chr3A 100.000 3462 0 0 1 3462 681344859 681341398 0.000000e+00 6394.0
1 TraesCS3A01G437700 chr3A 84.416 77 12 0 302 378 7209848 7209924 3.710000e-10 76.8
2 TraesCS3A01G437700 chr3D 93.341 2538 116 32 379 2883 544361920 544359403 0.000000e+00 3701.0
3 TraesCS3A01G437700 chr3D 86.254 582 45 12 2869 3446 544359251 544358701 1.780000e-167 599.0
4 TraesCS3A01G437700 chr3B 91.964 2464 111 54 387 2801 720220051 720217626 0.000000e+00 3373.0
5 TraesCS3A01G437700 chr3B 86.386 617 57 21 1204 1805 799812532 799811928 0.000000e+00 649.0
6 TraesCS3A01G437700 chr3B 82.274 299 41 9 3167 3462 720216972 720216683 7.420000e-62 248.0
7 TraesCS3A01G437700 chr3B 89.535 86 9 0 2992 3077 720217421 720217336 3.650000e-20 110.0
8 TraesCS3A01G437700 chr5A 78.947 1083 130 58 752 1802 702225952 702226968 0.000000e+00 647.0
9 TraesCS3A01G437700 chr5A 91.404 349 30 0 1457 1805 702522348 702522000 2.420000e-131 479.0
10 TraesCS3A01G437700 chr5A 76.534 831 138 42 1882 2699 702227611 702228397 5.380000e-108 401.0
11 TraesCS3A01G437700 chr5A 88.770 187 21 0 1206 1392 702522638 702522452 2.690000e-56 230.0
12 TraesCS3A01G437700 chr5A 86.842 76 10 0 302 377 491240676 491240751 6.160000e-13 86.1
13 TraesCS3A01G437700 chr5A 85.135 74 11 0 304 377 482130609 482130536 3.710000e-10 76.8
14 TraesCS3A01G437700 chr5A 83.117 77 12 1 302 377 443298680 443298604 6.200000e-08 69.4
15 TraesCS3A01G437700 chr4D 85.646 627 58 20 1204 1813 506287231 506286620 6.310000e-177 630.0
16 TraesCS3A01G437700 chr4D 90.202 347 32 2 1457 1802 506051367 506051712 5.270000e-123 451.0
17 TraesCS3A01G437700 chr4D 82.716 405 67 2 1882 2286 506052068 506052469 1.180000e-94 357.0
18 TraesCS3A01G437700 chr4D 89.950 199 20 0 1194 1392 506051047 506051245 1.230000e-64 257.0
19 TraesCS3A01G437700 chr4B 92.286 350 27 0 1456 1805 662421008 662420659 6.670000e-137 497.0
20 TraesCS3A01G437700 chr4B 91.667 348 27 2 1456 1802 661304512 661304858 6.720000e-132 481.0
21 TraesCS3A01G437700 chr4B 82.598 408 61 8 1890 2293 661305257 661305658 5.500000e-93 351.0
22 TraesCS3A01G437700 chr4B 90.659 182 17 0 1206 1387 661304243 661304424 3.450000e-60 243.0
23 TraesCS3A01G437700 chr4B 90.110 182 18 0 1206 1387 662421277 662421096 1.610000e-58 237.0
24 TraesCS3A01G437700 chr7D 78.000 150 29 1 3145 3290 591409925 591409776 1.320000e-14 91.6
25 TraesCS3A01G437700 chr1D 86.111 72 10 0 302 373 74927547 74927476 1.030000e-10 78.7
26 TraesCS3A01G437700 chr1D 100.000 30 0 0 3029 3058 191372636 191372607 4.830000e-04 56.5
27 TraesCS3A01G437700 chr5B 90.909 55 5 0 302 356 553272210 553272264 1.330000e-09 75.0
28 TraesCS3A01G437700 chr1B 90.909 55 5 0 302 356 29402603 29402549 1.330000e-09 75.0
29 TraesCS3A01G437700 chr1B 100.000 30 0 0 3029 3058 264761708 264761679 4.830000e-04 56.5
30 TraesCS3A01G437700 chr7A 81.690 71 13 0 302 372 8409180 8409110 3.730000e-05 60.2
31 TraesCS3A01G437700 chr7A 81.690 71 13 0 302 372 8415988 8415918 3.730000e-05 60.2
32 TraesCS3A01G437700 chr2D 92.308 39 3 0 2870 2908 119943808 119943770 4.830000e-04 56.5
33 TraesCS3A01G437700 chr2B 92.308 39 3 0 2870 2908 172670204 172670166 4.830000e-04 56.5
34 TraesCS3A01G437700 chr2A 92.308 39 3 0 2870 2908 123128806 123128768 4.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G437700 chr3A 681341398 681344859 3461 True 6394.000000 6394 100.000000 1 3462 1 chr3A.!!$R1 3461
1 TraesCS3A01G437700 chr3D 544358701 544361920 3219 True 2150.000000 3701 89.797500 379 3446 2 chr3D.!!$R1 3067
2 TraesCS3A01G437700 chr3B 720216683 720220051 3368 True 1243.666667 3373 87.924333 387 3462 3 chr3B.!!$R2 3075
3 TraesCS3A01G437700 chr3B 799811928 799812532 604 True 649.000000 649 86.386000 1204 1805 1 chr3B.!!$R1 601
4 TraesCS3A01G437700 chr5A 702225952 702228397 2445 False 524.000000 647 77.740500 752 2699 2 chr5A.!!$F2 1947
5 TraesCS3A01G437700 chr5A 702522000 702522638 638 True 354.500000 479 90.087000 1206 1805 2 chr5A.!!$R3 599
6 TraesCS3A01G437700 chr4D 506286620 506287231 611 True 630.000000 630 85.646000 1204 1813 1 chr4D.!!$R1 609
7 TraesCS3A01G437700 chr4D 506051047 506052469 1422 False 355.000000 451 87.622667 1194 2286 3 chr4D.!!$F1 1092
8 TraesCS3A01G437700 chr4B 662420659 662421277 618 True 367.000000 497 91.198000 1206 1805 2 chr4B.!!$R1 599
9 TraesCS3A01G437700 chr4B 661304243 661305658 1415 False 358.333333 481 88.308000 1206 2293 3 chr4B.!!$F1 1087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.035056 AGAAGGAATGTTCGGGCTGG 60.035 55.0 0.00 0.00 0.00 4.85 F
292 293 0.251634 CTGGCTCCTGAAGAACTCCC 59.748 60.0 0.00 0.00 0.00 4.30 F
298 299 0.389948 CCTGAAGAACTCCCGAACGG 60.390 60.0 6.25 6.25 0.00 4.44 F
684 685 0.616371 CGTACCCATTCCCACTTGGA 59.384 55.0 0.00 0.00 43.18 3.53 F
2295 2989 0.530870 GCGTGGAGGTAAGCCAGATC 60.531 60.0 0.00 0.00 35.77 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 1497 0.038310 TTCCTCTCCTCGTCTGCAGA 59.962 55.0 13.74 13.74 0.00 4.26 R
1821 1916 0.108804 CGAATATGGACGGGATCGGG 60.109 60.0 0.00 0.00 41.39 5.14 R
1872 2536 0.390860 CCCGGTCCTGATCAGTGATC 59.609 60.0 23.75 23.75 39.31 2.92 R
2370 3065 1.229428 ACCGAATGCACAGTTCAGTG 58.771 50.0 0.00 0.00 42.37 3.66 R
3098 4067 0.034574 TAGCAATGCCACACCGGATT 60.035 50.0 9.46 0.00 36.56 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.103934 CAGCTTCTCGAGGGAGCG 59.896 66.667 25.49 19.37 40.26 5.03
18 19 2.044848 AGCTTCTCGAGGGAGCGA 60.045 61.111 25.49 1.47 40.26 4.93
33 34 3.211288 CGAGGAGCATTCGACCCT 58.789 61.111 0.00 0.00 40.36 4.34
34 35 1.227089 CGAGGAGCATTCGACCCTG 60.227 63.158 0.00 0.00 40.36 4.45
35 36 1.901085 GAGGAGCATTCGACCCTGT 59.099 57.895 0.00 0.00 0.00 4.00
36 37 0.460987 GAGGAGCATTCGACCCTGTG 60.461 60.000 0.00 0.00 0.00 3.66
37 38 2.109126 GGAGCATTCGACCCTGTGC 61.109 63.158 0.00 0.00 37.84 4.57
38 39 2.045926 AGCATTCGACCCTGTGCC 60.046 61.111 0.00 0.00 38.31 5.01
39 40 2.045926 GCATTCGACCCTGTGCCT 60.046 61.111 0.00 0.00 0.00 4.75
40 41 2.401766 GCATTCGACCCTGTGCCTG 61.402 63.158 0.00 0.00 0.00 4.85
41 42 2.045926 ATTCGACCCTGTGCCTGC 60.046 61.111 0.00 0.00 0.00 4.85
42 43 2.894257 ATTCGACCCTGTGCCTGCA 61.894 57.895 0.00 0.00 0.00 4.41
43 44 2.410322 ATTCGACCCTGTGCCTGCAA 62.410 55.000 0.00 0.00 0.00 4.08
44 45 3.052082 CGACCCTGTGCCTGCAAG 61.052 66.667 0.00 0.00 0.00 4.01
45 46 3.368571 GACCCTGTGCCTGCAAGC 61.369 66.667 0.00 0.00 0.00 4.01
46 47 3.857309 GACCCTGTGCCTGCAAGCT 62.857 63.158 9.08 0.00 0.00 3.74
47 48 3.060615 CCCTGTGCCTGCAAGCTC 61.061 66.667 9.08 5.58 0.00 4.09
48 49 3.429141 CCTGTGCCTGCAAGCTCG 61.429 66.667 9.08 2.08 0.00 5.03
49 50 4.099170 CTGTGCCTGCAAGCTCGC 62.099 66.667 9.08 0.00 0.00 5.03
50 51 4.631247 TGTGCCTGCAAGCTCGCT 62.631 61.111 9.08 0.00 0.00 4.93
51 52 4.099170 GTGCCTGCAAGCTCGCTG 62.099 66.667 9.08 0.00 0.00 5.18
52 53 4.631247 TGCCTGCAAGCTCGCTGT 62.631 61.111 9.08 0.00 0.00 4.40
53 54 4.099170 GCCTGCAAGCTCGCTGTG 62.099 66.667 0.00 0.00 0.00 3.66
54 55 4.099170 CCTGCAAGCTCGCTGTGC 62.099 66.667 0.00 14.71 38.78 4.57
55 56 3.048475 CTGCAAGCTCGCTGTGCT 61.048 61.111 19.18 1.72 43.32 4.40
56 57 3.310253 CTGCAAGCTCGCTGTGCTG 62.310 63.158 19.18 16.38 41.03 4.41
57 58 4.099170 GCAAGCTCGCTGTGCTGG 62.099 66.667 14.46 4.76 41.03 4.85
58 59 3.429141 CAAGCTCGCTGTGCTGGG 61.429 66.667 6.02 0.23 41.03 4.45
59 60 4.711949 AAGCTCGCTGTGCTGGGG 62.712 66.667 6.02 0.00 41.03 4.96
88 89 3.790152 GCTGGGCCATAAGAAAAGAAG 57.210 47.619 6.72 0.00 0.00 2.85
89 90 3.356290 GCTGGGCCATAAGAAAAGAAGA 58.644 45.455 6.72 0.00 0.00 2.87
90 91 3.763897 GCTGGGCCATAAGAAAAGAAGAA 59.236 43.478 6.72 0.00 0.00 2.52
91 92 4.220602 GCTGGGCCATAAGAAAAGAAGAAA 59.779 41.667 6.72 0.00 0.00 2.52
92 93 5.279456 GCTGGGCCATAAGAAAAGAAGAAAA 60.279 40.000 6.72 0.00 0.00 2.29
93 94 6.096673 TGGGCCATAAGAAAAGAAGAAAAC 57.903 37.500 0.00 0.00 0.00 2.43
94 95 5.161358 GGGCCATAAGAAAAGAAGAAAACG 58.839 41.667 4.39 0.00 0.00 3.60
95 96 5.278808 GGGCCATAAGAAAAGAAGAAAACGT 60.279 40.000 4.39 0.00 0.00 3.99
96 97 6.213677 GGCCATAAGAAAAGAAGAAAACGTT 58.786 36.000 0.00 0.00 0.00 3.99
97 98 6.700081 GGCCATAAGAAAAGAAGAAAACGTTT 59.300 34.615 7.96 7.96 0.00 3.60
98 99 7.096189 GGCCATAAGAAAAGAAGAAAACGTTTC 60.096 37.037 15.01 8.08 36.52 2.78
99 100 7.357287 GCCATAAGAAAAGAAGAAAACGTTTCG 60.357 37.037 15.01 0.00 39.39 3.46
100 101 7.853929 CCATAAGAAAAGAAGAAAACGTTTCGA 59.146 33.333 15.01 0.00 39.39 3.71
101 102 9.382244 CATAAGAAAAGAAGAAAACGTTTCGAT 57.618 29.630 15.01 2.99 39.39 3.59
103 104 8.989160 AAGAAAAGAAGAAAACGTTTCGATAG 57.011 30.769 15.01 0.00 39.39 2.08
104 105 7.573627 AGAAAAGAAGAAAACGTTTCGATAGG 58.426 34.615 15.01 0.00 39.39 2.57
105 106 6.856135 AAAGAAGAAAACGTTTCGATAGGT 57.144 33.333 15.01 0.00 0.00 3.08
106 107 7.951530 AAAGAAGAAAACGTTTCGATAGGTA 57.048 32.000 15.01 0.00 0.00 3.08
107 108 6.941218 AGAAGAAAACGTTTCGATAGGTAC 57.059 37.500 15.01 0.24 0.00 3.34
108 109 6.685657 AGAAGAAAACGTTTCGATAGGTACT 58.314 36.000 15.01 0.00 46.37 2.73
109 110 7.150640 AGAAGAAAACGTTTCGATAGGTACTT 58.849 34.615 15.01 8.52 41.75 2.24
110 111 6.941218 AGAAAACGTTTCGATAGGTACTTC 57.059 37.500 15.01 3.49 41.75 3.01
111 112 5.570589 AGAAAACGTTTCGATAGGTACTTCG 59.429 40.000 15.01 6.96 41.75 3.79
112 113 3.411415 ACGTTTCGATAGGTACTTCGG 57.589 47.619 11.52 1.82 41.75 4.30
113 114 2.098117 ACGTTTCGATAGGTACTTCGGG 59.902 50.000 11.52 4.54 41.75 5.14
114 115 2.542411 CGTTTCGATAGGTACTTCGGGG 60.542 54.545 11.52 0.00 41.75 5.73
115 116 2.428530 GTTTCGATAGGTACTTCGGGGT 59.571 50.000 11.52 0.00 41.75 4.95
116 117 1.683943 TCGATAGGTACTTCGGGGTG 58.316 55.000 11.52 0.00 41.75 4.61
117 118 0.672342 CGATAGGTACTTCGGGGTGG 59.328 60.000 0.00 0.00 41.75 4.61
118 119 1.785647 GATAGGTACTTCGGGGTGGT 58.214 55.000 0.00 0.00 41.75 4.16
119 120 2.749466 CGATAGGTACTTCGGGGTGGTA 60.749 54.545 0.00 0.00 41.75 3.25
120 121 2.143876 TAGGTACTTCGGGGTGGTAC 57.856 55.000 0.00 0.00 41.75 3.34
121 122 0.114954 AGGTACTTCGGGGTGGTACA 59.885 55.000 0.00 0.00 37.95 2.90
122 123 1.197812 GGTACTTCGGGGTGGTACAT 58.802 55.000 0.00 0.00 44.52 2.29
123 124 1.134610 GGTACTTCGGGGTGGTACATG 60.135 57.143 0.00 0.00 44.52 3.21
124 125 1.134610 GTACTTCGGGGTGGTACATGG 60.135 57.143 0.00 0.00 44.52 3.66
125 126 0.545787 ACTTCGGGGTGGTACATGGA 60.546 55.000 0.00 0.00 44.52 3.41
126 127 0.837272 CTTCGGGGTGGTACATGGAT 59.163 55.000 0.00 0.00 44.52 3.41
127 128 0.544223 TTCGGGGTGGTACATGGATG 59.456 55.000 0.00 0.00 44.52 3.51
128 129 0.619255 TCGGGGTGGTACATGGATGT 60.619 55.000 0.00 0.00 44.52 3.06
129 130 1.124780 CGGGGTGGTACATGGATGTA 58.875 55.000 0.00 0.00 44.52 2.29
130 131 1.487142 CGGGGTGGTACATGGATGTAA 59.513 52.381 0.00 0.00 44.11 2.41
131 132 2.092861 CGGGGTGGTACATGGATGTAAA 60.093 50.000 0.00 0.00 44.11 2.01
132 133 3.434453 CGGGGTGGTACATGGATGTAAAT 60.434 47.826 0.00 0.00 44.11 1.40
133 134 4.542697 GGGGTGGTACATGGATGTAAATT 58.457 43.478 0.00 0.00 44.11 1.82
134 135 4.959839 GGGGTGGTACATGGATGTAAATTT 59.040 41.667 0.00 0.00 44.11 1.82
135 136 5.068591 GGGGTGGTACATGGATGTAAATTTC 59.931 44.000 0.00 0.00 44.11 2.17
136 137 5.654650 GGGTGGTACATGGATGTAAATTTCA 59.345 40.000 0.00 0.00 44.11 2.69
137 138 6.153680 GGGTGGTACATGGATGTAAATTTCAA 59.846 38.462 0.00 0.00 44.11 2.69
138 139 7.033185 GGTGGTACATGGATGTAAATTTCAAC 58.967 38.462 0.00 0.00 44.11 3.18
139 140 7.309499 GGTGGTACATGGATGTAAATTTCAACA 60.309 37.037 0.00 0.00 44.11 3.33
140 141 8.085296 GTGGTACATGGATGTAAATTTCAACAA 58.915 33.333 0.00 0.00 44.11 2.83
141 142 8.085296 TGGTACATGGATGTAAATTTCAACAAC 58.915 33.333 0.00 0.00 44.11 3.32
142 143 8.303876 GGTACATGGATGTAAATTTCAACAACT 58.696 33.333 0.00 0.00 44.11 3.16
143 144 9.341899 GTACATGGATGTAAATTTCAACAACTC 57.658 33.333 0.00 0.00 44.11 3.01
144 145 7.378181 ACATGGATGTAAATTTCAACAACTCC 58.622 34.615 0.00 0.69 39.68 3.85
145 146 7.233348 ACATGGATGTAAATTTCAACAACTCCT 59.767 33.333 12.05 0.93 39.68 3.69
146 147 8.739039 CATGGATGTAAATTTCAACAACTCCTA 58.261 33.333 12.05 3.66 29.76 2.94
147 148 8.106247 TGGATGTAAATTTCAACAACTCCTAC 57.894 34.615 12.05 0.00 29.76 3.18
148 149 7.942341 TGGATGTAAATTTCAACAACTCCTACT 59.058 33.333 12.05 0.00 29.76 2.57
149 150 8.793592 GGATGTAAATTTCAACAACTCCTACTT 58.206 33.333 0.00 0.00 0.00 2.24
150 151 9.827411 GATGTAAATTTCAACAACTCCTACTTC 57.173 33.333 0.00 0.00 0.00 3.01
151 152 8.974060 TGTAAATTTCAACAACTCCTACTTCT 57.026 30.769 0.00 0.00 0.00 2.85
152 153 8.836413 TGTAAATTTCAACAACTCCTACTTCTG 58.164 33.333 0.00 0.00 0.00 3.02
153 154 6.884280 AATTTCAACAACTCCTACTTCTGG 57.116 37.500 0.00 0.00 0.00 3.86
154 155 5.367945 TTTCAACAACTCCTACTTCTGGT 57.632 39.130 0.00 0.00 0.00 4.00
155 156 5.367945 TTCAACAACTCCTACTTCTGGTT 57.632 39.130 0.00 0.00 0.00 3.67
156 157 5.367945 TCAACAACTCCTACTTCTGGTTT 57.632 39.130 0.00 0.00 0.00 3.27
157 158 5.751586 TCAACAACTCCTACTTCTGGTTTT 58.248 37.500 0.00 0.00 0.00 2.43
158 159 6.891388 TCAACAACTCCTACTTCTGGTTTTA 58.109 36.000 0.00 0.00 0.00 1.52
159 160 6.990349 TCAACAACTCCTACTTCTGGTTTTAG 59.010 38.462 0.00 0.00 0.00 1.85
160 161 5.306394 ACAACTCCTACTTCTGGTTTTAGC 58.694 41.667 0.00 0.00 0.00 3.09
161 162 4.189639 ACTCCTACTTCTGGTTTTAGCG 57.810 45.455 0.00 0.00 0.00 4.26
162 163 3.830755 ACTCCTACTTCTGGTTTTAGCGA 59.169 43.478 0.00 0.00 0.00 4.93
163 164 4.282703 ACTCCTACTTCTGGTTTTAGCGAA 59.717 41.667 0.00 0.00 0.00 4.70
164 165 4.817517 TCCTACTTCTGGTTTTAGCGAAG 58.182 43.478 0.00 0.00 38.95 3.79
177 178 2.187946 CGAAGCTGGGATTCCGCT 59.812 61.111 3.80 3.80 41.93 5.52
178 179 2.176273 CGAAGCTGGGATTCCGCTG 61.176 63.158 9.72 0.98 40.72 5.18
179 180 2.439156 AAGCTGGGATTCCGCTGC 60.439 61.111 9.72 9.52 45.85 5.25
181 182 2.899339 GCTGGGATTCCGCTGCTC 60.899 66.667 12.59 0.00 43.47 4.26
182 183 2.203126 CTGGGATTCCGCTGCTCC 60.203 66.667 0.00 0.00 35.24 4.70
183 184 2.688666 TGGGATTCCGCTGCTCCT 60.689 61.111 5.74 0.00 35.24 3.69
184 185 2.110006 GGGATTCCGCTGCTCCTC 59.890 66.667 5.74 0.00 0.00 3.71
185 186 2.735772 GGGATTCCGCTGCTCCTCA 61.736 63.158 5.74 0.00 0.00 3.86
186 187 1.221840 GGATTCCGCTGCTCCTCAA 59.778 57.895 0.00 0.00 0.00 3.02
187 188 0.392998 GGATTCCGCTGCTCCTCAAA 60.393 55.000 0.00 0.00 0.00 2.69
188 189 1.453155 GATTCCGCTGCTCCTCAAAA 58.547 50.000 0.00 0.00 0.00 2.44
189 190 2.019984 GATTCCGCTGCTCCTCAAAAT 58.980 47.619 0.00 0.00 0.00 1.82
190 191 1.909700 TTCCGCTGCTCCTCAAAATT 58.090 45.000 0.00 0.00 0.00 1.82
191 192 1.167851 TCCGCTGCTCCTCAAAATTG 58.832 50.000 0.00 0.00 0.00 2.32
192 193 0.457337 CCGCTGCTCCTCAAAATTGC 60.457 55.000 0.00 0.00 0.00 3.56
193 194 0.241749 CGCTGCTCCTCAAAATTGCA 59.758 50.000 0.00 0.00 0.00 4.08
194 195 1.706443 GCTGCTCCTCAAAATTGCAC 58.294 50.000 0.00 0.00 0.00 4.57
195 196 1.973138 CTGCTCCTCAAAATTGCACG 58.027 50.000 0.00 0.00 0.00 5.34
196 197 0.039256 TGCTCCTCAAAATTGCACGC 60.039 50.000 0.00 0.00 0.00 5.34
197 198 0.039256 GCTCCTCAAAATTGCACGCA 60.039 50.000 0.00 0.00 0.00 5.24
198 199 1.973138 CTCCTCAAAATTGCACGCAG 58.027 50.000 0.00 0.00 0.00 5.18
199 200 0.039256 TCCTCAAAATTGCACGCAGC 60.039 50.000 0.00 0.00 45.96 5.25
203 204 0.636733 CAAAATTGCACGCAGCGATC 59.363 50.000 24.65 12.85 46.85 3.69
204 205 0.794229 AAAATTGCACGCAGCGATCG 60.794 50.000 24.65 11.69 46.85 3.69
205 206 1.911293 AAATTGCACGCAGCGATCGT 61.911 50.000 24.65 0.00 46.85 3.73
206 207 1.911293 AATTGCACGCAGCGATCGTT 61.911 50.000 24.65 8.05 46.85 3.85
207 208 1.911293 ATTGCACGCAGCGATCGTTT 61.911 50.000 24.65 2.45 44.20 3.60
208 209 2.173382 GCACGCAGCGATCGTTTT 59.827 55.556 24.65 0.00 38.19 2.43
209 210 1.859135 GCACGCAGCGATCGTTTTC 60.859 57.895 24.65 4.01 38.19 2.29
210 211 1.781555 CACGCAGCGATCGTTTTCT 59.218 52.632 24.65 1.67 38.19 2.52
211 212 0.246912 CACGCAGCGATCGTTTTCTC 60.247 55.000 24.65 0.00 38.19 2.87
212 213 1.345176 CGCAGCGATCGTTTTCTCC 59.655 57.895 17.81 0.00 0.00 3.71
213 214 1.345176 GCAGCGATCGTTTTCTCCG 59.655 57.895 17.81 0.00 0.00 4.63
214 215 1.352156 GCAGCGATCGTTTTCTCCGT 61.352 55.000 17.81 0.00 0.00 4.69
215 216 0.366871 CAGCGATCGTTTTCTCCGTG 59.633 55.000 17.81 0.00 0.00 4.94
216 217 0.242825 AGCGATCGTTTTCTCCGTGA 59.757 50.000 17.81 0.00 0.00 4.35
217 218 1.065358 GCGATCGTTTTCTCCGTGAA 58.935 50.000 17.81 0.00 0.00 3.18
218 219 1.059264 GCGATCGTTTTCTCCGTGAAG 59.941 52.381 17.81 0.00 35.89 3.02
219 220 1.059264 CGATCGTTTTCTCCGTGAAGC 59.941 52.381 7.03 0.00 35.89 3.86
220 221 1.393883 GATCGTTTTCTCCGTGAAGCC 59.606 52.381 0.00 0.00 35.89 4.35
221 222 0.601841 TCGTTTTCTCCGTGAAGCCC 60.602 55.000 0.00 0.00 35.89 5.19
222 223 1.866925 GTTTTCTCCGTGAAGCCCG 59.133 57.895 0.00 0.00 35.89 6.13
223 224 1.964373 TTTTCTCCGTGAAGCCCGC 60.964 57.895 0.00 0.00 35.89 6.13
224 225 2.391724 TTTTCTCCGTGAAGCCCGCT 62.392 55.000 0.00 0.00 35.89 5.52
225 226 2.391724 TTTCTCCGTGAAGCCCGCTT 62.392 55.000 0.54 0.54 39.23 4.68
233 234 2.506065 GAAGCCCGCTTCTAGGAGA 58.494 57.895 19.77 0.00 46.38 3.71
234 235 0.824759 GAAGCCCGCTTCTAGGAGAA 59.175 55.000 19.77 0.00 46.38 2.87
245 246 4.688021 CTTCTAGGAGAAGGAATGTTCGG 58.312 47.826 8.14 0.00 46.03 4.30
246 247 3.031736 TCTAGGAGAAGGAATGTTCGGG 58.968 50.000 0.00 0.00 0.00 5.14
247 248 0.253327 AGGAGAAGGAATGTTCGGGC 59.747 55.000 0.00 0.00 0.00 6.13
248 249 0.253327 GGAGAAGGAATGTTCGGGCT 59.747 55.000 0.00 0.00 0.00 5.19
249 250 1.373570 GAGAAGGAATGTTCGGGCTG 58.626 55.000 0.00 0.00 0.00 4.85
250 251 0.035056 AGAAGGAATGTTCGGGCTGG 60.035 55.000 0.00 0.00 0.00 4.85
251 252 1.657751 GAAGGAATGTTCGGGCTGGC 61.658 60.000 0.00 0.00 0.00 4.85
252 253 2.044946 GGAATGTTCGGGCTGGCT 60.045 61.111 0.00 0.00 0.00 4.75
253 254 1.678970 GGAATGTTCGGGCTGGCTT 60.679 57.895 0.00 0.00 0.00 4.35
254 255 1.657751 GGAATGTTCGGGCTGGCTTC 61.658 60.000 0.00 0.00 0.00 3.86
255 256 0.960364 GAATGTTCGGGCTGGCTTCA 60.960 55.000 0.00 0.00 0.00 3.02
256 257 0.323725 AATGTTCGGGCTGGCTTCAT 60.324 50.000 0.00 0.00 0.00 2.57
257 258 1.033746 ATGTTCGGGCTGGCTTCATG 61.034 55.000 0.00 0.00 0.00 3.07
258 259 2.751436 TTCGGGCTGGCTTCATGC 60.751 61.111 0.00 0.00 41.94 4.06
259 260 3.565961 TTCGGGCTGGCTTCATGCA 62.566 57.895 0.00 0.00 45.15 3.96
260 261 3.515286 CGGGCTGGCTTCATGCAG 61.515 66.667 0.00 0.00 45.15 4.41
261 262 3.834799 GGGCTGGCTTCATGCAGC 61.835 66.667 9.02 9.02 45.15 5.25
262 263 2.754658 GGCTGGCTTCATGCAGCT 60.755 61.111 16.95 0.00 45.15 4.24
263 264 2.490217 GCTGGCTTCATGCAGCTG 59.510 61.111 16.95 10.11 45.15 4.24
264 265 2.341101 GCTGGCTTCATGCAGCTGT 61.341 57.895 16.95 0.00 45.15 4.40
265 266 1.874345 GCTGGCTTCATGCAGCTGTT 61.874 55.000 16.95 0.00 45.15 3.16
266 267 0.601558 CTGGCTTCATGCAGCTGTTT 59.398 50.000 16.95 0.00 45.15 2.83
267 268 1.814394 CTGGCTTCATGCAGCTGTTTA 59.186 47.619 16.95 2.57 45.15 2.01
268 269 1.814394 TGGCTTCATGCAGCTGTTTAG 59.186 47.619 16.95 7.26 45.15 1.85
269 270 1.133790 GGCTTCATGCAGCTGTTTAGG 59.866 52.381 16.95 4.38 45.15 2.69
270 271 2.086869 GCTTCATGCAGCTGTTTAGGA 58.913 47.619 16.64 6.79 42.31 2.94
271 272 2.489329 GCTTCATGCAGCTGTTTAGGAA 59.511 45.455 16.64 13.74 42.31 3.36
272 273 3.427233 GCTTCATGCAGCTGTTTAGGAAG 60.427 47.826 24.48 24.48 42.31 3.46
273 274 2.086869 TCATGCAGCTGTTTAGGAAGC 58.913 47.619 16.64 0.00 39.82 3.86
278 279 3.256281 GCTGTTTAGGAAGCTGGCT 57.744 52.632 0.00 0.00 36.47 4.75
279 280 1.090728 GCTGTTTAGGAAGCTGGCTC 58.909 55.000 0.00 0.00 36.47 4.70
280 281 1.743996 CTGTTTAGGAAGCTGGCTCC 58.256 55.000 0.00 0.00 0.00 4.70
281 282 1.280421 CTGTTTAGGAAGCTGGCTCCT 59.720 52.381 10.30 10.30 37.64 3.69
282 283 1.003580 TGTTTAGGAAGCTGGCTCCTG 59.996 52.381 14.63 0.00 35.24 3.86
283 284 1.279271 GTTTAGGAAGCTGGCTCCTGA 59.721 52.381 14.63 4.64 35.24 3.86
284 285 1.656587 TTAGGAAGCTGGCTCCTGAA 58.343 50.000 14.63 3.96 35.24 3.02
285 286 1.198713 TAGGAAGCTGGCTCCTGAAG 58.801 55.000 14.63 0.00 35.24 3.02
286 287 0.546267 AGGAAGCTGGCTCCTGAAGA 60.546 55.000 4.57 0.00 31.75 2.87
287 288 0.326264 GGAAGCTGGCTCCTGAAGAA 59.674 55.000 0.00 0.00 0.00 2.52
288 289 1.447945 GAAGCTGGCTCCTGAAGAAC 58.552 55.000 0.00 0.00 0.00 3.01
289 290 1.003003 GAAGCTGGCTCCTGAAGAACT 59.997 52.381 0.00 0.00 0.00 3.01
290 291 0.612744 AGCTGGCTCCTGAAGAACTC 59.387 55.000 0.00 0.00 0.00 3.01
291 292 0.392327 GCTGGCTCCTGAAGAACTCC 60.392 60.000 0.00 0.00 0.00 3.85
292 293 0.251634 CTGGCTCCTGAAGAACTCCC 59.748 60.000 0.00 0.00 0.00 4.30
293 294 1.219393 GGCTCCTGAAGAACTCCCG 59.781 63.158 0.00 0.00 0.00 5.14
294 295 1.258445 GGCTCCTGAAGAACTCCCGA 61.258 60.000 0.00 0.00 0.00 5.14
295 296 0.608640 GCTCCTGAAGAACTCCCGAA 59.391 55.000 0.00 0.00 0.00 4.30
296 297 1.673329 GCTCCTGAAGAACTCCCGAAC 60.673 57.143 0.00 0.00 0.00 3.95
297 298 0.601558 TCCTGAAGAACTCCCGAACG 59.398 55.000 0.00 0.00 0.00 3.95
298 299 0.389948 CCTGAAGAACTCCCGAACGG 60.390 60.000 6.25 6.25 0.00 4.44
311 312 3.405823 CCGAACGGGCCCTAAATATAA 57.594 47.619 22.43 0.00 0.00 0.98
312 313 3.332034 CCGAACGGGCCCTAAATATAAG 58.668 50.000 22.43 2.61 0.00 1.73
313 314 2.740447 CGAACGGGCCCTAAATATAAGC 59.260 50.000 22.43 0.00 0.00 3.09
314 315 2.873094 ACGGGCCCTAAATATAAGCC 57.127 50.000 22.43 0.00 43.09 4.35
315 316 2.345560 ACGGGCCCTAAATATAAGCCT 58.654 47.619 22.43 0.00 43.36 4.58
316 317 2.714793 ACGGGCCCTAAATATAAGCCTT 59.285 45.455 22.43 0.00 43.36 4.35
317 318 3.139584 ACGGGCCCTAAATATAAGCCTTT 59.860 43.478 22.43 0.00 43.36 3.11
318 319 4.149598 CGGGCCCTAAATATAAGCCTTTT 58.850 43.478 22.43 0.00 43.36 2.27
319 320 4.587262 CGGGCCCTAAATATAAGCCTTTTT 59.413 41.667 22.43 0.00 43.36 1.94
320 321 5.771165 CGGGCCCTAAATATAAGCCTTTTTA 59.229 40.000 22.43 0.00 43.36 1.52
321 322 6.072119 CGGGCCCTAAATATAAGCCTTTTTAG 60.072 42.308 22.43 1.71 43.36 1.85
322 323 7.008332 GGGCCCTAAATATAAGCCTTTTTAGA 58.992 38.462 17.04 0.00 43.36 2.10
323 324 7.176865 GGGCCCTAAATATAAGCCTTTTTAGAG 59.823 40.741 17.04 0.00 43.36 2.43
324 325 7.942894 GGCCCTAAATATAAGCCTTTTTAGAGA 59.057 37.037 8.15 0.00 40.57 3.10
325 326 9.521841 GCCCTAAATATAAGCCTTTTTAGAGAT 57.478 33.333 8.15 0.00 34.90 2.75
395 396 9.360093 TCTAGAATGAGATCTCGAAAAAGTTTC 57.640 33.333 17.76 9.74 0.00 2.78
396 397 7.969536 AGAATGAGATCTCGAAAAAGTTTCA 57.030 32.000 17.76 0.00 0.00 2.69
410 411 6.442513 AAAAGTTTCAAACCAGAGTCAGAG 57.557 37.500 0.00 0.00 0.00 3.35
411 412 4.762289 AGTTTCAAACCAGAGTCAGAGT 57.238 40.909 0.00 0.00 0.00 3.24
414 415 3.475566 TCAAACCAGAGTCAGAGTTGG 57.524 47.619 0.00 0.00 36.76 3.77
417 418 1.428869 ACCAGAGTCAGAGTTGGCTT 58.571 50.000 0.00 0.00 39.97 4.35
418 419 2.609747 ACCAGAGTCAGAGTTGGCTTA 58.390 47.619 0.00 0.00 39.97 3.09
433 434 6.358118 GTTGGCTTAACTTTTCCAAAAAGG 57.642 37.500 14.67 0.00 39.93 3.11
435 436 6.056090 TGGCTTAACTTTTCCAAAAAGGTT 57.944 33.333 14.67 8.64 44.19 3.50
436 437 5.877564 TGGCTTAACTTTTCCAAAAAGGTTG 59.122 36.000 14.67 7.48 42.57 3.77
510 511 6.594937 GGAATCATTTGCCTAATTCTTTTGCA 59.405 34.615 0.00 0.00 0.00 4.08
526 527 1.299850 GCACCAAAACCGCCTTCAC 60.300 57.895 0.00 0.00 0.00 3.18
561 562 2.028112 TGTCCATTCCTGCACTAGTGAC 60.028 50.000 27.08 17.20 0.00 3.67
675 676 6.761714 AGAAACATAGAATCACGTACCCATTC 59.238 38.462 0.00 0.00 0.00 2.67
684 685 0.616371 CGTACCCATTCCCACTTGGA 59.384 55.000 0.00 0.00 43.18 3.53
867 871 1.378531 GGCGTTGGTATCATCAGCAA 58.621 50.000 0.00 0.00 33.73 3.91
1383 1407 0.969149 ACTGCGTTCTCATCCTCACA 59.031 50.000 0.00 0.00 0.00 3.58
1394 1418 3.921677 TCATCCTCACAGGTTCGTAAAC 58.078 45.455 0.00 0.00 36.53 2.01
1395 1419 3.322541 TCATCCTCACAGGTTCGTAAACA 59.677 43.478 0.00 0.00 37.10 2.83
1396 1420 3.102052 TCCTCACAGGTTCGTAAACAC 57.898 47.619 0.00 0.00 37.10 3.32
1424 1467 9.883142 AACAAATCCAACATCTTTTCTTGTTTA 57.117 25.926 0.00 0.00 33.93 2.01
1806 1897 2.497675 TGTCCAAGCAGTCAGTATCTCC 59.502 50.000 0.00 0.00 0.00 3.71
1807 1898 2.763448 GTCCAAGCAGTCAGTATCTCCT 59.237 50.000 0.00 0.00 0.00 3.69
1821 1916 9.368674 GTCAGTATCTCCTTAACTTTCTTAACC 57.631 37.037 0.00 0.00 0.00 2.85
1830 1925 1.208776 ACTTTCTTAACCCCGATCCCG 59.791 52.381 0.00 0.00 0.00 5.14
1853 1950 2.750712 CCATATTCGCATGCATCCATCA 59.249 45.455 19.57 0.00 0.00 3.07
1867 2530 6.466812 TGCATCCATCACCTACTTACATATG 58.533 40.000 0.00 0.00 0.00 1.78
1870 2533 7.445121 CATCCATCACCTACTTACATATGTGT 58.555 38.462 18.81 10.99 42.39 3.72
1871 2534 7.432148 TCCATCACCTACTTACATATGTGTT 57.568 36.000 18.81 4.91 39.77 3.32
1872 2536 7.272244 TCCATCACCTACTTACATATGTGTTG 58.728 38.462 18.81 9.29 39.77 3.33
1873 2537 7.125053 TCCATCACCTACTTACATATGTGTTGA 59.875 37.037 18.81 9.52 39.77 3.18
1874 2538 7.933577 CCATCACCTACTTACATATGTGTTGAT 59.066 37.037 18.81 11.17 39.77 2.57
1875 2539 8.982685 CATCACCTACTTACATATGTGTTGATC 58.017 37.037 18.81 0.00 39.77 2.92
1876 2540 8.073467 TCACCTACTTACATATGTGTTGATCA 57.927 34.615 18.81 0.00 39.77 2.92
1877 2541 7.979537 TCACCTACTTACATATGTGTTGATCAC 59.020 37.037 18.81 0.00 46.31 3.06
2059 2753 8.034804 TCATTCATTCATGTCTCTTTCGTTCTA 58.965 33.333 0.00 0.00 0.00 2.10
2139 2833 0.671472 TGACGCACAGCTTCATCAGG 60.671 55.000 0.00 0.00 32.04 3.86
2289 2983 4.452733 AGCGGCGTGGAGGTAAGC 62.453 66.667 9.37 0.00 0.00 3.09
2295 2989 0.530870 GCGTGGAGGTAAGCCAGATC 60.531 60.000 0.00 0.00 35.77 2.75
2342 3037 3.633235 CATCCTAGCTAGCGTAACTGTG 58.367 50.000 15.74 0.00 0.00 3.66
2350 3045 2.406616 GCGTAACTGTGGCCCATGG 61.407 63.158 4.14 4.14 0.00 3.66
2370 3065 3.253230 GGCACCATTTTTGCTCACATAC 58.747 45.455 0.00 0.00 40.07 2.39
2431 3128 2.933056 GCTGTCCTCTGCCTACAAGTTC 60.933 54.545 0.00 0.00 33.40 3.01
2471 3168 0.806102 CTGCATGTAGAACCCGACCG 60.806 60.000 4.57 0.00 0.00 4.79
2472 3169 1.217244 GCATGTAGAACCCGACCGT 59.783 57.895 0.00 0.00 0.00 4.83
2474 3171 1.800286 GCATGTAGAACCCGACCGTAC 60.800 57.143 0.00 0.00 0.00 3.67
2518 3216 1.674651 AGGCTACTGCAGTCGACGA 60.675 57.895 25.56 4.02 41.91 4.20
2519 3217 1.211969 GGCTACTGCAGTCGACGAA 59.788 57.895 25.56 3.16 41.91 3.85
2520 3218 0.179134 GGCTACTGCAGTCGACGAAT 60.179 55.000 25.56 0.00 41.91 3.34
2521 3219 1.630148 GCTACTGCAGTCGACGAATT 58.370 50.000 25.56 0.00 39.41 2.17
2522 3220 2.479049 GGCTACTGCAGTCGACGAATTA 60.479 50.000 25.56 0.59 41.91 1.40
2600 3314 4.371786 TGATGCTTGCTACTAGTATGTGC 58.628 43.478 2.33 4.39 0.00 4.57
2612 3326 4.755629 ACTAGTATGTGCGACGATGTATCT 59.244 41.667 0.00 0.00 0.00 1.98
2664 3379 4.458397 AGCACTGCATAGCTCATACAAAT 58.542 39.130 7.17 0.00 36.00 2.32
2695 3415 2.557490 GACCTCGTTCTCCACTGTACTT 59.443 50.000 0.00 0.00 0.00 2.24
2758 3483 9.131791 TCCCCTTAAATAAATCAAGTTCTATGC 57.868 33.333 0.00 0.00 0.00 3.14
2786 3511 7.033791 GCCGTTTGATCTCCGAAAGATATATA 58.966 38.462 0.00 0.00 45.06 0.86
2787 3512 7.707035 GCCGTTTGATCTCCGAAAGATATATAT 59.293 37.037 0.00 0.00 45.06 0.86
2788 3513 9.025020 CCGTTTGATCTCCGAAAGATATATATG 57.975 37.037 0.00 0.00 45.06 1.78
2790 3515 8.821894 GTTTGATCTCCGAAAGATATATATGGC 58.178 37.037 0.00 0.00 45.06 4.40
2791 3516 6.739112 TGATCTCCGAAAGATATATATGGCG 58.261 40.000 0.00 0.00 45.06 5.69
2793 3518 6.132791 TCTCCGAAAGATATATATGGCGTC 57.867 41.667 0.00 0.00 0.00 5.19
2794 3519 5.886474 TCTCCGAAAGATATATATGGCGTCT 59.114 40.000 0.00 0.00 0.00 4.18
2802 3527 8.988064 AAGATATATATGGCGTCTAAACTGTG 57.012 34.615 0.00 0.00 0.00 3.66
2812 3537 5.448632 GGCGTCTAAACTGTGGAAATTATGG 60.449 44.000 0.00 0.00 0.00 2.74
2834 3559 2.289444 ACATGTTCGGTTCGAGAATGGT 60.289 45.455 14.28 1.05 37.14 3.55
2837 3562 3.992643 TGTTCGGTTCGAGAATGGTAAA 58.007 40.909 0.00 0.00 37.14 2.01
2838 3563 3.742369 TGTTCGGTTCGAGAATGGTAAAC 59.258 43.478 0.00 0.00 37.14 2.01
2839 3564 2.598589 TCGGTTCGAGAATGGTAAACG 58.401 47.619 0.00 0.00 33.47 3.60
2866 3591 0.387239 GAACTGGCATTGTGAACGGC 60.387 55.000 0.00 0.00 0.00 5.68
2901 3792 6.744112 TCATAAACATGTTTGGTTCAACTCC 58.256 36.000 29.72 0.00 33.83 3.85
2910 3801 0.310854 GGTTCAACTCCAAACGGCAG 59.689 55.000 0.00 0.00 0.00 4.85
3058 4027 4.571176 GGTGTCATCTCGAATAAAAGTCCC 59.429 45.833 0.00 0.00 0.00 4.46
3073 4042 3.081409 CCCCCGACTCCAATCCGT 61.081 66.667 0.00 0.00 0.00 4.69
3077 4046 1.530323 CCCGACTCCAATCCGTTTTT 58.470 50.000 0.00 0.00 0.00 1.94
3101 4070 3.896648 TTTTTGCGAGTGACTCCAATC 57.103 42.857 14.30 1.07 34.33 2.67
3102 4071 1.808411 TTTGCGAGTGACTCCAATCC 58.192 50.000 14.30 0.00 34.16 3.01
3115 4084 1.153784 CAATCCGGTGTGGCATTGC 60.154 57.895 0.00 0.00 37.80 3.56
3116 4085 1.304381 AATCCGGTGTGGCATTGCT 60.304 52.632 8.82 0.00 37.80 3.91
3117 4086 0.034574 AATCCGGTGTGGCATTGCTA 60.035 50.000 8.82 0.00 37.80 3.49
3118 4087 0.034574 ATCCGGTGTGGCATTGCTAA 60.035 50.000 8.82 0.00 37.80 3.09
3119 4088 0.676466 TCCGGTGTGGCATTGCTAAG 60.676 55.000 8.82 0.00 37.80 2.18
3120 4089 1.656818 CCGGTGTGGCATTGCTAAGG 61.657 60.000 8.82 1.07 0.00 2.69
3121 4090 0.676466 CGGTGTGGCATTGCTAAGGA 60.676 55.000 8.82 0.00 0.00 3.36
3122 4091 1.098050 GGTGTGGCATTGCTAAGGAG 58.902 55.000 8.82 0.00 0.00 3.69
3132 4101 2.302019 GCTAAGGAGCCCCTGAGTT 58.698 57.895 0.00 0.00 42.29 3.01
3165 4424 3.926821 TTTCTTGAATAACGGGTTGGC 57.073 42.857 0.00 0.00 0.00 4.52
3205 4464 0.035739 GTGGTTCCATGTACACCGGT 59.964 55.000 0.00 0.00 32.71 5.28
3208 4467 0.035739 GTTCCATGTACACCGGTGGT 59.964 55.000 36.47 23.92 35.62 4.16
3266 4525 3.525059 TTTGCAAGCAAAGTCGTCG 57.475 47.368 15.59 0.00 40.51 5.12
3278 4537 0.608582 AGTCGTCGGCTTGGTCTAGT 60.609 55.000 0.00 0.00 0.00 2.57
3289 4548 4.991687 GGCTTGGTCTAGTGATATTAGTGC 59.008 45.833 0.00 0.00 0.00 4.40
3292 4551 5.434352 TGGTCTAGTGATATTAGTGCGTC 57.566 43.478 0.00 0.00 0.00 5.19
3295 4554 4.912766 GTCTAGTGATATTAGTGCGTCTGC 59.087 45.833 0.00 0.00 43.20 4.26
3308 4567 1.366679 CGTCTGCCTGTCTAGTACGA 58.633 55.000 0.00 0.00 0.00 3.43
3343 4602 2.541346 CTGATATGCTTGACGCGATTGT 59.459 45.455 15.93 0.00 43.27 2.71
3352 4611 0.572590 GACGCGATTGTCAATCTCCG 59.427 55.000 15.93 22.91 38.75 4.63
3360 4619 3.861276 TTGTCAATCTCCGTCGTACAT 57.139 42.857 0.00 0.00 0.00 2.29
3406 4667 9.887406 GATTCAACGAGGTTTATTTTTCTACAA 57.113 29.630 0.00 0.00 0.00 2.41
3425 4686 4.270008 ACAAGTCTTTGCAGGTACTTTGT 58.730 39.130 6.85 3.66 37.85 2.83
3446 4707 5.518812 TGTTGGTTGAATTTCTCGATGTTG 58.481 37.500 0.00 0.00 0.00 3.33
3447 4708 5.067153 TGTTGGTTGAATTTCTCGATGTTGT 59.933 36.000 0.00 0.00 0.00 3.32
3449 4710 5.757886 TGGTTGAATTTCTCGATGTTGTTC 58.242 37.500 0.00 0.00 0.00 3.18
3450 4711 5.298026 TGGTTGAATTTCTCGATGTTGTTCA 59.702 36.000 0.00 0.00 0.00 3.18
3453 4714 7.382218 GGTTGAATTTCTCGATGTTGTTCATTT 59.618 33.333 0.00 0.00 36.83 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.103934 CGCTCCCTCGAGAAGCTG 59.896 66.667 26.68 19.54 38.52 4.24
1 2 2.044848 TCGCTCCCTCGAGAAGCT 60.045 61.111 26.68 0.00 38.52 3.74
7 8 3.723097 ATGCTCCTCGCTCCCTCGA 62.723 63.158 0.00 0.00 40.11 4.04
8 9 2.691674 GAATGCTCCTCGCTCCCTCG 62.692 65.000 0.00 0.00 40.11 4.63
9 10 1.068921 GAATGCTCCTCGCTCCCTC 59.931 63.158 0.00 0.00 40.11 4.30
10 11 2.790791 CGAATGCTCCTCGCTCCCT 61.791 63.158 0.00 0.00 40.11 4.20
11 12 2.279784 CGAATGCTCCTCGCTCCC 60.280 66.667 0.00 0.00 40.11 4.30
12 13 1.590259 GTCGAATGCTCCTCGCTCC 60.590 63.158 0.00 0.00 40.11 4.70
13 14 1.590259 GGTCGAATGCTCCTCGCTC 60.590 63.158 0.00 0.00 40.11 5.03
14 15 2.496817 GGTCGAATGCTCCTCGCT 59.503 61.111 0.00 0.00 40.11 4.93
15 16 2.586357 GGGTCGAATGCTCCTCGC 60.586 66.667 0.00 0.00 36.25 5.03
16 17 1.227089 CAGGGTCGAATGCTCCTCG 60.227 63.158 0.00 0.00 37.66 4.63
17 18 0.460987 CACAGGGTCGAATGCTCCTC 60.461 60.000 0.00 0.00 0.00 3.71
18 19 1.599047 CACAGGGTCGAATGCTCCT 59.401 57.895 0.00 0.00 0.00 3.69
19 20 2.109126 GCACAGGGTCGAATGCTCC 61.109 63.158 0.00 0.00 35.16 4.70
20 21 2.109126 GGCACAGGGTCGAATGCTC 61.109 63.158 0.00 0.00 38.18 4.26
21 22 2.045926 GGCACAGGGTCGAATGCT 60.046 61.111 0.00 0.00 38.18 3.79
22 23 2.045926 AGGCACAGGGTCGAATGC 60.046 61.111 0.00 0.00 37.35 3.56
23 24 2.401766 GCAGGCACAGGGTCGAATG 61.402 63.158 0.00 0.00 0.00 2.67
24 25 2.045926 GCAGGCACAGGGTCGAAT 60.046 61.111 0.00 0.00 0.00 3.34
25 26 3.113514 TTGCAGGCACAGGGTCGAA 62.114 57.895 0.00 0.00 0.00 3.71
26 27 3.535629 CTTGCAGGCACAGGGTCGA 62.536 63.158 0.00 0.00 0.00 4.20
27 28 3.052082 CTTGCAGGCACAGGGTCG 61.052 66.667 0.00 0.00 0.00 4.79
28 29 3.368571 GCTTGCAGGCACAGGGTC 61.369 66.667 16.98 0.00 0.00 4.46
29 30 3.857309 GAGCTTGCAGGCACAGGGT 62.857 63.158 23.85 0.00 34.17 4.34
30 31 3.060615 GAGCTTGCAGGCACAGGG 61.061 66.667 23.85 0.00 34.17 4.45
31 32 3.429141 CGAGCTTGCAGGCACAGG 61.429 66.667 23.85 4.85 34.17 4.00
32 33 4.099170 GCGAGCTTGCAGGCACAG 62.099 66.667 23.85 13.94 34.15 3.66
33 34 4.631247 AGCGAGCTTGCAGGCACA 62.631 61.111 27.59 0.00 37.31 4.57
34 35 4.099170 CAGCGAGCTTGCAGGCAC 62.099 66.667 27.59 16.02 37.31 5.01
35 36 4.631247 ACAGCGAGCTTGCAGGCA 62.631 61.111 27.59 0.00 37.31 4.75
36 37 4.099170 CACAGCGAGCTTGCAGGC 62.099 66.667 27.59 13.82 37.31 4.85
37 38 4.099170 GCACAGCGAGCTTGCAGG 62.099 66.667 27.59 20.33 36.22 4.85
38 39 3.048475 AGCACAGCGAGCTTGCAG 61.048 61.111 27.59 21.95 39.87 4.41
39 40 3.351416 CAGCACAGCGAGCTTGCA 61.351 61.111 27.59 0.00 41.14 4.08
40 41 4.099170 CCAGCACAGCGAGCTTGC 62.099 66.667 18.89 18.89 41.14 4.01
41 42 3.429141 CCCAGCACAGCGAGCTTG 61.429 66.667 0.00 0.00 41.14 4.01
42 43 4.711949 CCCCAGCACAGCGAGCTT 62.712 66.667 0.00 0.00 41.14 3.74
68 69 3.356290 TCTTCTTTTCTTATGGCCCAGC 58.644 45.455 0.00 0.00 0.00 4.85
69 70 5.982890 TTTCTTCTTTTCTTATGGCCCAG 57.017 39.130 0.00 0.00 0.00 4.45
70 71 5.278758 CGTTTTCTTCTTTTCTTATGGCCCA 60.279 40.000 0.00 0.00 0.00 5.36
71 72 5.161358 CGTTTTCTTCTTTTCTTATGGCCC 58.839 41.667 0.00 0.00 0.00 5.80
72 73 5.769367 ACGTTTTCTTCTTTTCTTATGGCC 58.231 37.500 0.00 0.00 0.00 5.36
73 74 7.357287 CGAAACGTTTTCTTCTTTTCTTATGGC 60.357 37.037 15.89 0.00 0.00 4.40
74 75 7.853929 TCGAAACGTTTTCTTCTTTTCTTATGG 59.146 33.333 15.89 0.00 0.00 2.74
75 76 8.762149 TCGAAACGTTTTCTTCTTTTCTTATG 57.238 30.769 15.89 0.00 0.00 1.90
78 79 8.068380 CCTATCGAAACGTTTTCTTCTTTTCTT 58.932 33.333 15.89 0.00 0.00 2.52
79 80 7.226128 ACCTATCGAAACGTTTTCTTCTTTTCT 59.774 33.333 15.89 0.00 0.00 2.52
80 81 7.350467 ACCTATCGAAACGTTTTCTTCTTTTC 58.650 34.615 15.89 0.00 0.00 2.29
81 82 7.255491 ACCTATCGAAACGTTTTCTTCTTTT 57.745 32.000 15.89 0.00 0.00 2.27
82 83 6.856135 ACCTATCGAAACGTTTTCTTCTTT 57.144 33.333 15.89 0.00 0.00 2.52
83 84 7.150640 AGTACCTATCGAAACGTTTTCTTCTT 58.849 34.615 15.89 0.50 0.00 2.52
84 85 6.685657 AGTACCTATCGAAACGTTTTCTTCT 58.314 36.000 15.89 1.81 0.00 2.85
85 86 6.941218 AGTACCTATCGAAACGTTTTCTTC 57.059 37.500 15.89 0.91 0.00 2.87
86 87 6.088616 CGAAGTACCTATCGAAACGTTTTCTT 59.911 38.462 15.89 5.47 41.43 2.52
87 88 5.570589 CGAAGTACCTATCGAAACGTTTTCT 59.429 40.000 15.89 5.65 41.43 2.52
88 89 5.220098 CCGAAGTACCTATCGAAACGTTTTC 60.220 44.000 15.89 7.60 41.43 2.29
89 90 4.622740 CCGAAGTACCTATCGAAACGTTTT 59.377 41.667 15.89 1.63 41.43 2.43
90 91 4.168760 CCGAAGTACCTATCGAAACGTTT 58.831 43.478 14.57 14.57 41.43 3.60
91 92 3.428045 CCCGAAGTACCTATCGAAACGTT 60.428 47.826 13.11 0.00 41.43 3.99
92 93 2.098117 CCCGAAGTACCTATCGAAACGT 59.902 50.000 13.11 0.00 41.43 3.99
93 94 2.542411 CCCCGAAGTACCTATCGAAACG 60.542 54.545 13.11 0.00 41.43 3.60
94 95 2.428530 ACCCCGAAGTACCTATCGAAAC 59.571 50.000 13.11 0.00 41.43 2.78
95 96 2.428171 CACCCCGAAGTACCTATCGAAA 59.572 50.000 13.11 0.00 41.43 3.46
96 97 2.026641 CACCCCGAAGTACCTATCGAA 58.973 52.381 13.11 0.00 41.43 3.71
97 98 1.683943 CACCCCGAAGTACCTATCGA 58.316 55.000 13.11 0.00 41.43 3.59
98 99 0.672342 CCACCCCGAAGTACCTATCG 59.328 60.000 6.39 6.39 38.74 2.92
99 100 1.785647 ACCACCCCGAAGTACCTATC 58.214 55.000 0.00 0.00 0.00 2.08
100 101 2.024080 TGTACCACCCCGAAGTACCTAT 60.024 50.000 0.00 0.00 36.38 2.57
101 102 1.357420 TGTACCACCCCGAAGTACCTA 59.643 52.381 0.00 0.00 36.38 3.08
102 103 0.114954 TGTACCACCCCGAAGTACCT 59.885 55.000 0.00 0.00 36.38 3.08
103 104 1.134610 CATGTACCACCCCGAAGTACC 60.135 57.143 0.00 0.00 36.38 3.34
104 105 1.134610 CCATGTACCACCCCGAAGTAC 60.135 57.143 0.00 0.00 37.47 2.73
105 106 1.196911 CCATGTACCACCCCGAAGTA 58.803 55.000 0.00 0.00 0.00 2.24
106 107 0.545787 TCCATGTACCACCCCGAAGT 60.546 55.000 0.00 0.00 0.00 3.01
107 108 0.837272 ATCCATGTACCACCCCGAAG 59.163 55.000 0.00 0.00 0.00 3.79
108 109 0.544223 CATCCATGTACCACCCCGAA 59.456 55.000 0.00 0.00 0.00 4.30
109 110 0.619255 ACATCCATGTACCACCCCGA 60.619 55.000 0.00 0.00 39.68 5.14
110 111 1.124780 TACATCCATGTACCACCCCG 58.875 55.000 0.00 0.00 41.97 5.73
111 112 3.655615 TTTACATCCATGTACCACCCC 57.344 47.619 0.00 0.00 42.48 4.95
112 113 5.654650 TGAAATTTACATCCATGTACCACCC 59.345 40.000 0.00 0.00 42.48 4.61
113 114 6.767524 TGAAATTTACATCCATGTACCACC 57.232 37.500 0.00 0.00 42.48 4.61
114 115 7.598278 TGTTGAAATTTACATCCATGTACCAC 58.402 34.615 0.00 0.00 42.48 4.16
115 116 7.767250 TGTTGAAATTTACATCCATGTACCA 57.233 32.000 0.00 0.00 42.48 3.25
116 117 8.303876 AGTTGTTGAAATTTACATCCATGTACC 58.696 33.333 0.00 0.00 42.48 3.34
117 118 9.341899 GAGTTGTTGAAATTTACATCCATGTAC 57.658 33.333 0.00 0.00 42.48 2.90
118 119 8.519526 GGAGTTGTTGAAATTTACATCCATGTA 58.480 33.333 8.12 0.00 41.97 2.29
119 120 7.233348 AGGAGTTGTTGAAATTTACATCCATGT 59.767 33.333 12.89 0.00 44.48 3.21
120 121 7.605449 AGGAGTTGTTGAAATTTACATCCATG 58.395 34.615 12.89 0.00 29.68 3.66
121 122 7.781324 AGGAGTTGTTGAAATTTACATCCAT 57.219 32.000 12.89 1.28 29.68 3.41
122 123 7.942341 AGTAGGAGTTGTTGAAATTTACATCCA 59.058 33.333 12.89 0.00 29.68 3.41
123 124 8.336801 AGTAGGAGTTGTTGAAATTTACATCC 57.663 34.615 5.92 5.92 0.00 3.51
124 125 9.827411 GAAGTAGGAGTTGTTGAAATTTACATC 57.173 33.333 0.00 0.00 0.00 3.06
125 126 9.574516 AGAAGTAGGAGTTGTTGAAATTTACAT 57.425 29.630 0.00 0.00 0.00 2.29
126 127 8.836413 CAGAAGTAGGAGTTGTTGAAATTTACA 58.164 33.333 0.00 0.00 0.00 2.41
127 128 8.290325 CCAGAAGTAGGAGTTGTTGAAATTTAC 58.710 37.037 0.00 0.00 0.00 2.01
128 129 7.996644 ACCAGAAGTAGGAGTTGTTGAAATTTA 59.003 33.333 0.00 0.00 0.00 1.40
129 130 6.833933 ACCAGAAGTAGGAGTTGTTGAAATTT 59.166 34.615 0.00 0.00 0.00 1.82
130 131 6.365520 ACCAGAAGTAGGAGTTGTTGAAATT 58.634 36.000 0.00 0.00 0.00 1.82
131 132 5.941788 ACCAGAAGTAGGAGTTGTTGAAAT 58.058 37.500 0.00 0.00 0.00 2.17
132 133 5.367945 ACCAGAAGTAGGAGTTGTTGAAA 57.632 39.130 0.00 0.00 0.00 2.69
133 134 5.367945 AACCAGAAGTAGGAGTTGTTGAA 57.632 39.130 0.00 0.00 0.00 2.69
134 135 5.367945 AAACCAGAAGTAGGAGTTGTTGA 57.632 39.130 0.00 0.00 0.00 3.18
135 136 6.293462 GCTAAAACCAGAAGTAGGAGTTGTTG 60.293 42.308 0.00 0.00 0.00 3.33
136 137 5.763698 GCTAAAACCAGAAGTAGGAGTTGTT 59.236 40.000 0.00 0.00 0.00 2.83
137 138 5.306394 GCTAAAACCAGAAGTAGGAGTTGT 58.694 41.667 0.00 0.00 0.00 3.32
138 139 4.389077 CGCTAAAACCAGAAGTAGGAGTTG 59.611 45.833 0.00 0.00 0.00 3.16
139 140 4.282703 TCGCTAAAACCAGAAGTAGGAGTT 59.717 41.667 0.00 0.00 0.00 3.01
140 141 3.830755 TCGCTAAAACCAGAAGTAGGAGT 59.169 43.478 0.00 0.00 0.00 3.85
141 142 4.451629 TCGCTAAAACCAGAAGTAGGAG 57.548 45.455 0.00 0.00 0.00 3.69
142 143 4.817517 CTTCGCTAAAACCAGAAGTAGGA 58.182 43.478 0.00 0.00 36.34 2.94
143 144 3.371285 GCTTCGCTAAAACCAGAAGTAGG 59.629 47.826 6.03 0.00 41.36 3.18
144 145 4.092091 CAGCTTCGCTAAAACCAGAAGTAG 59.908 45.833 6.03 0.00 41.36 2.57
145 146 3.994392 CAGCTTCGCTAAAACCAGAAGTA 59.006 43.478 6.03 0.00 41.36 2.24
146 147 2.808543 CAGCTTCGCTAAAACCAGAAGT 59.191 45.455 6.03 0.00 41.36 3.01
147 148 2.160417 CCAGCTTCGCTAAAACCAGAAG 59.840 50.000 0.00 0.21 41.99 2.85
148 149 2.151202 CCAGCTTCGCTAAAACCAGAA 58.849 47.619 0.00 0.00 36.40 3.02
149 150 1.610624 CCCAGCTTCGCTAAAACCAGA 60.611 52.381 0.00 0.00 36.40 3.86
150 151 0.804989 CCCAGCTTCGCTAAAACCAG 59.195 55.000 0.00 0.00 36.40 4.00
151 152 0.398696 TCCCAGCTTCGCTAAAACCA 59.601 50.000 0.00 0.00 36.40 3.67
152 153 1.751437 ATCCCAGCTTCGCTAAAACC 58.249 50.000 0.00 0.00 36.40 3.27
153 154 2.097629 GGAATCCCAGCTTCGCTAAAAC 59.902 50.000 0.00 0.00 36.40 2.43
154 155 2.365582 GGAATCCCAGCTTCGCTAAAA 58.634 47.619 0.00 0.00 36.40 1.52
155 156 1.742411 CGGAATCCCAGCTTCGCTAAA 60.742 52.381 0.00 0.00 36.40 1.85
156 157 0.179084 CGGAATCCCAGCTTCGCTAA 60.179 55.000 0.00 0.00 36.40 3.09
157 158 1.441729 CGGAATCCCAGCTTCGCTA 59.558 57.895 0.00 0.00 36.40 4.26
158 159 2.187946 CGGAATCCCAGCTTCGCT 59.812 61.111 0.00 0.00 40.77 4.93
159 160 3.577313 GCGGAATCCCAGCTTCGC 61.577 66.667 0.00 0.00 0.00 4.70
160 161 2.176273 CAGCGGAATCCCAGCTTCG 61.176 63.158 0.00 0.00 39.22 3.79
161 162 2.476320 GCAGCGGAATCCCAGCTTC 61.476 63.158 0.00 0.00 39.22 3.86
162 163 2.439156 GCAGCGGAATCCCAGCTT 60.439 61.111 0.00 0.00 39.22 3.74
163 164 3.397613 GAGCAGCGGAATCCCAGCT 62.398 63.158 7.37 7.37 40.92 4.24
164 165 2.899339 GAGCAGCGGAATCCCAGC 60.899 66.667 0.00 0.00 33.97 4.85
165 166 2.203126 GGAGCAGCGGAATCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
166 167 2.688666 AGGAGCAGCGGAATCCCA 60.689 61.111 5.18 0.00 33.30 4.37
167 168 2.110006 GAGGAGCAGCGGAATCCC 59.890 66.667 5.18 0.00 33.30 3.85
168 169 0.392998 TTTGAGGAGCAGCGGAATCC 60.393 55.000 1.08 1.08 0.00 3.01
169 170 1.453155 TTTTGAGGAGCAGCGGAATC 58.547 50.000 0.00 0.00 0.00 2.52
170 171 2.134789 ATTTTGAGGAGCAGCGGAAT 57.865 45.000 0.00 0.00 0.00 3.01
171 172 1.541147 CAATTTTGAGGAGCAGCGGAA 59.459 47.619 0.00 0.00 0.00 4.30
172 173 1.167851 CAATTTTGAGGAGCAGCGGA 58.832 50.000 0.00 0.00 0.00 5.54
173 174 0.457337 GCAATTTTGAGGAGCAGCGG 60.457 55.000 0.00 0.00 0.00 5.52
174 175 0.241749 TGCAATTTTGAGGAGCAGCG 59.758 50.000 0.00 0.00 0.00 5.18
175 176 1.706443 GTGCAATTTTGAGGAGCAGC 58.294 50.000 0.00 0.00 35.66 5.25
176 177 1.973138 CGTGCAATTTTGAGGAGCAG 58.027 50.000 0.00 0.00 35.66 4.24
177 178 0.039256 GCGTGCAATTTTGAGGAGCA 60.039 50.000 0.00 0.00 0.00 4.26
178 179 0.039256 TGCGTGCAATTTTGAGGAGC 60.039 50.000 0.00 0.00 0.00 4.70
179 180 1.973138 CTGCGTGCAATTTTGAGGAG 58.027 50.000 0.00 0.00 0.00 3.69
180 181 0.039256 GCTGCGTGCAATTTTGAGGA 60.039 50.000 0.00 0.00 42.31 3.71
181 182 1.339235 CGCTGCGTGCAATTTTGAGG 61.339 55.000 14.93 0.00 43.06 3.86
182 183 0.385849 TCGCTGCGTGCAATTTTGAG 60.386 50.000 22.48 0.00 43.06 3.02
183 184 0.240678 ATCGCTGCGTGCAATTTTGA 59.759 45.000 22.48 0.00 43.06 2.69
184 185 0.636733 GATCGCTGCGTGCAATTTTG 59.363 50.000 22.48 0.00 43.06 2.44
185 186 0.794229 CGATCGCTGCGTGCAATTTT 60.794 50.000 22.48 0.00 43.06 1.82
186 187 1.226101 CGATCGCTGCGTGCAATTT 60.226 52.632 22.48 0.00 43.06 1.82
187 188 1.911293 AACGATCGCTGCGTGCAATT 61.911 50.000 22.48 8.50 41.75 2.32
188 189 1.911293 AAACGATCGCTGCGTGCAAT 61.911 50.000 22.48 7.86 41.75 3.56
189 190 2.111932 AAAACGATCGCTGCGTGCAA 62.112 50.000 22.48 2.28 41.75 4.08
190 191 2.493088 GAAAACGATCGCTGCGTGCA 62.493 55.000 22.48 2.70 41.75 4.57
191 192 1.859135 GAAAACGATCGCTGCGTGC 60.859 57.895 22.48 13.65 41.75 5.34
192 193 0.246912 GAGAAAACGATCGCTGCGTG 60.247 55.000 22.48 15.00 41.75 5.34
193 194 1.352156 GGAGAAAACGATCGCTGCGT 61.352 55.000 22.48 9.40 44.94 5.24
194 195 1.345176 GGAGAAAACGATCGCTGCG 59.655 57.895 17.25 17.25 0.00 5.18
195 196 1.345176 CGGAGAAAACGATCGCTGC 59.655 57.895 16.60 8.44 0.00 5.25
196 197 0.366871 CACGGAGAAAACGATCGCTG 59.633 55.000 16.60 5.20 34.93 5.18
197 198 0.242825 TCACGGAGAAAACGATCGCT 59.757 50.000 16.60 3.50 34.93 4.93
198 199 1.059264 CTTCACGGAGAAAACGATCGC 59.941 52.381 16.60 0.00 35.40 4.58
199 200 1.059264 GCTTCACGGAGAAAACGATCG 59.941 52.381 14.88 14.88 35.40 3.69
200 201 1.393883 GGCTTCACGGAGAAAACGATC 59.606 52.381 0.00 0.00 35.40 3.69
201 202 1.439679 GGCTTCACGGAGAAAACGAT 58.560 50.000 0.00 0.00 35.40 3.73
202 203 0.601841 GGGCTTCACGGAGAAAACGA 60.602 55.000 0.00 0.00 35.40 3.85
203 204 1.866925 GGGCTTCACGGAGAAAACG 59.133 57.895 0.00 0.00 35.40 3.60
204 205 1.866925 CGGGCTTCACGGAGAAAAC 59.133 57.895 0.00 0.00 35.40 2.43
205 206 1.964373 GCGGGCTTCACGGAGAAAA 60.964 57.895 0.00 0.00 35.40 2.29
206 207 2.358247 GCGGGCTTCACGGAGAAA 60.358 61.111 0.00 0.00 35.40 2.52
207 208 2.879233 AAGCGGGCTTCACGGAGAA 61.879 57.895 0.00 0.00 34.41 2.87
208 209 3.311110 AAGCGGGCTTCACGGAGA 61.311 61.111 0.00 0.00 0.00 3.71
215 216 1.202475 CTTCTCCTAGAAGCGGGCTTC 60.202 57.143 22.48 22.48 44.35 3.86
216 217 0.827368 CTTCTCCTAGAAGCGGGCTT 59.173 55.000 5.45 5.45 44.35 4.35
217 218 2.510664 CTTCTCCTAGAAGCGGGCT 58.489 57.895 3.87 0.00 44.35 5.19
224 225 3.451178 CCCGAACATTCCTTCTCCTAGAA 59.549 47.826 0.00 0.00 32.50 2.10
225 226 3.031736 CCCGAACATTCCTTCTCCTAGA 58.968 50.000 0.00 0.00 0.00 2.43
226 227 2.483889 GCCCGAACATTCCTTCTCCTAG 60.484 54.545 0.00 0.00 0.00 3.02
227 228 1.485066 GCCCGAACATTCCTTCTCCTA 59.515 52.381 0.00 0.00 0.00 2.94
228 229 0.253327 GCCCGAACATTCCTTCTCCT 59.747 55.000 0.00 0.00 0.00 3.69
229 230 0.253327 AGCCCGAACATTCCTTCTCC 59.747 55.000 0.00 0.00 0.00 3.71
230 231 1.373570 CAGCCCGAACATTCCTTCTC 58.626 55.000 0.00 0.00 0.00 2.87
231 232 0.035056 CCAGCCCGAACATTCCTTCT 60.035 55.000 0.00 0.00 0.00 2.85
232 233 1.657751 GCCAGCCCGAACATTCCTTC 61.658 60.000 0.00 0.00 0.00 3.46
233 234 1.678970 GCCAGCCCGAACATTCCTT 60.679 57.895 0.00 0.00 0.00 3.36
234 235 2.044946 GCCAGCCCGAACATTCCT 60.045 61.111 0.00 0.00 0.00 3.36
235 236 1.657751 GAAGCCAGCCCGAACATTCC 61.658 60.000 0.00 0.00 0.00 3.01
236 237 0.960364 TGAAGCCAGCCCGAACATTC 60.960 55.000 0.00 0.00 0.00 2.67
237 238 0.323725 ATGAAGCCAGCCCGAACATT 60.324 50.000 0.00 0.00 0.00 2.71
238 239 1.033746 CATGAAGCCAGCCCGAACAT 61.034 55.000 0.00 0.00 0.00 2.71
239 240 1.675310 CATGAAGCCAGCCCGAACA 60.675 57.895 0.00 0.00 0.00 3.18
240 241 3.056313 GCATGAAGCCAGCCCGAAC 62.056 63.158 0.00 0.00 37.23 3.95
241 242 2.751436 GCATGAAGCCAGCCCGAA 60.751 61.111 0.00 0.00 37.23 4.30
242 243 3.982316 CTGCATGAAGCCAGCCCGA 62.982 63.158 0.00 0.00 44.83 5.14
243 244 3.515286 CTGCATGAAGCCAGCCCG 61.515 66.667 0.00 0.00 44.83 6.13
244 245 3.834799 GCTGCATGAAGCCAGCCC 61.835 66.667 15.54 0.00 44.83 5.19
245 246 2.754658 AGCTGCATGAAGCCAGCC 60.755 61.111 22.72 3.67 44.68 4.85
246 247 1.874345 AACAGCTGCATGAAGCCAGC 61.874 55.000 22.72 17.44 44.68 4.85
247 248 0.601558 AAACAGCTGCATGAAGCCAG 59.398 50.000 22.72 17.28 44.68 4.85
248 249 1.814394 CTAAACAGCTGCATGAAGCCA 59.186 47.619 22.72 1.91 44.68 4.75
249 250 1.133790 CCTAAACAGCTGCATGAAGCC 59.866 52.381 22.72 4.50 44.68 4.35
250 251 2.086869 TCCTAAACAGCTGCATGAAGC 58.913 47.619 18.84 18.84 43.88 3.86
251 252 3.427233 GCTTCCTAAACAGCTGCATGAAG 60.427 47.826 15.27 18.10 32.87 3.02
252 253 2.489329 GCTTCCTAAACAGCTGCATGAA 59.511 45.455 15.27 8.88 32.87 2.57
253 254 2.086869 GCTTCCTAAACAGCTGCATGA 58.913 47.619 15.27 0.44 32.87 3.07
254 255 2.089980 AGCTTCCTAAACAGCTGCATG 58.910 47.619 15.27 1.43 44.98 4.06
255 256 2.503895 AGCTTCCTAAACAGCTGCAT 57.496 45.000 15.27 5.23 44.98 3.96
260 261 1.090728 GAGCCAGCTTCCTAAACAGC 58.909 55.000 0.00 0.00 36.16 4.40
261 262 1.280421 AGGAGCCAGCTTCCTAAACAG 59.720 52.381 3.47 0.00 31.06 3.16
262 263 1.003580 CAGGAGCCAGCTTCCTAAACA 59.996 52.381 5.10 0.00 31.73 2.83
263 264 1.279271 TCAGGAGCCAGCTTCCTAAAC 59.721 52.381 5.10 0.00 31.73 2.01
264 265 1.656587 TCAGGAGCCAGCTTCCTAAA 58.343 50.000 5.10 0.00 31.73 1.85
265 266 1.556911 CTTCAGGAGCCAGCTTCCTAA 59.443 52.381 5.10 0.00 31.73 2.69
266 267 1.198713 CTTCAGGAGCCAGCTTCCTA 58.801 55.000 5.10 0.00 31.73 2.94
267 268 0.546267 TCTTCAGGAGCCAGCTTCCT 60.546 55.000 0.00 0.00 0.00 3.36
268 269 0.326264 TTCTTCAGGAGCCAGCTTCC 59.674 55.000 0.00 0.00 0.00 3.46
269 270 1.003003 AGTTCTTCAGGAGCCAGCTTC 59.997 52.381 0.00 0.00 0.00 3.86
270 271 1.003003 GAGTTCTTCAGGAGCCAGCTT 59.997 52.381 0.00 0.00 0.00 3.74
271 272 0.612744 GAGTTCTTCAGGAGCCAGCT 59.387 55.000 0.00 0.00 0.00 4.24
272 273 0.392327 GGAGTTCTTCAGGAGCCAGC 60.392 60.000 0.00 0.00 0.00 4.85
273 274 0.251634 GGGAGTTCTTCAGGAGCCAG 59.748 60.000 0.00 0.00 0.00 4.85
274 275 1.544825 CGGGAGTTCTTCAGGAGCCA 61.545 60.000 0.00 0.00 0.00 4.75
275 276 1.219393 CGGGAGTTCTTCAGGAGCC 59.781 63.158 0.00 0.00 0.00 4.70
276 277 0.608640 TTCGGGAGTTCTTCAGGAGC 59.391 55.000 0.00 0.00 0.00 4.70
277 278 1.402984 CGTTCGGGAGTTCTTCAGGAG 60.403 57.143 0.00 0.00 0.00 3.69
278 279 0.601558 CGTTCGGGAGTTCTTCAGGA 59.398 55.000 0.00 0.00 0.00 3.86
279 280 0.389948 CCGTTCGGGAGTTCTTCAGG 60.390 60.000 3.04 0.00 38.47 3.86
280 281 3.123674 CCGTTCGGGAGTTCTTCAG 57.876 57.895 3.04 0.00 38.47 3.02
291 292 3.332034 CTTATATTTAGGGCCCGTTCGG 58.668 50.000 18.44 4.08 0.00 4.30
292 293 2.740447 GCTTATATTTAGGGCCCGTTCG 59.260 50.000 18.44 0.15 0.00 3.95
293 294 3.079578 GGCTTATATTTAGGGCCCGTTC 58.920 50.000 18.44 0.00 37.12 3.95
294 295 2.714793 AGGCTTATATTTAGGGCCCGTT 59.285 45.455 18.44 1.33 43.36 4.44
295 296 2.345560 AGGCTTATATTTAGGGCCCGT 58.654 47.619 18.44 7.64 43.36 5.28
296 297 3.434940 AAGGCTTATATTTAGGGCCCG 57.565 47.619 18.44 0.00 43.36 6.13
297 298 7.008332 TCTAAAAAGGCTTATATTTAGGGCCC 58.992 38.462 16.46 16.46 43.36 5.80
298 299 7.942894 TCTCTAAAAAGGCTTATATTTAGGGCC 59.057 37.037 21.19 0.00 42.74 5.80
299 300 8.919777 TCTCTAAAAAGGCTTATATTTAGGGC 57.080 34.615 21.19 0.00 36.32 5.19
367 368 9.883142 AACTTTTTCGAGATCTCATTCTAGATT 57.117 29.630 22.31 4.91 36.33 2.40
368 369 9.883142 AAACTTTTTCGAGATCTCATTCTAGAT 57.117 29.630 22.31 5.94 38.95 1.98
369 370 9.360093 GAAACTTTTTCGAGATCTCATTCTAGA 57.640 33.333 22.31 7.52 0.00 2.43
370 371 9.144747 TGAAACTTTTTCGAGATCTCATTCTAG 57.855 33.333 22.31 14.55 0.00 2.43
371 372 9.489084 TTGAAACTTTTTCGAGATCTCATTCTA 57.511 29.630 22.31 3.91 0.00 2.10
372 373 7.969536 TGAAACTTTTTCGAGATCTCATTCT 57.030 32.000 22.31 0.00 0.00 2.40
373 374 8.896826 GTTTGAAACTTTTTCGAGATCTCATTC 58.103 33.333 22.31 12.05 0.00 2.67
374 375 7.862873 GGTTTGAAACTTTTTCGAGATCTCATT 59.137 33.333 22.31 4.10 0.00 2.57
375 376 7.013274 TGGTTTGAAACTTTTTCGAGATCTCAT 59.987 33.333 22.31 0.00 0.00 2.90
376 377 6.317642 TGGTTTGAAACTTTTTCGAGATCTCA 59.682 34.615 22.31 7.11 0.00 3.27
377 378 6.725246 TGGTTTGAAACTTTTTCGAGATCTC 58.275 36.000 13.05 13.05 0.00 2.75
378 379 6.542370 TCTGGTTTGAAACTTTTTCGAGATCT 59.458 34.615 8.09 0.00 0.00 2.75
379 380 6.725246 TCTGGTTTGAAACTTTTTCGAGATC 58.275 36.000 8.09 0.00 0.00 2.75
380 381 6.318900 ACTCTGGTTTGAAACTTTTTCGAGAT 59.681 34.615 8.09 0.00 0.00 2.75
381 382 5.646360 ACTCTGGTTTGAAACTTTTTCGAGA 59.354 36.000 8.09 0.00 0.00 4.04
382 383 5.880341 ACTCTGGTTTGAAACTTTTTCGAG 58.120 37.500 8.09 7.39 0.00 4.04
383 384 5.413213 TGACTCTGGTTTGAAACTTTTTCGA 59.587 36.000 8.09 0.00 0.00 3.71
384 385 5.636837 TGACTCTGGTTTGAAACTTTTTCG 58.363 37.500 8.09 0.00 0.00 3.46
385 386 6.852664 TCTGACTCTGGTTTGAAACTTTTTC 58.147 36.000 8.09 0.17 0.00 2.29
395 396 1.876156 GCCAACTCTGACTCTGGTTTG 59.124 52.381 0.00 0.00 0.00 2.93
396 397 1.771255 AGCCAACTCTGACTCTGGTTT 59.229 47.619 0.00 0.00 0.00 3.27
410 411 5.878116 ACCTTTTTGGAAAAGTTAAGCCAAC 59.122 36.000 11.05 0.00 39.90 3.77
411 412 6.056090 ACCTTTTTGGAAAAGTTAAGCCAA 57.944 33.333 11.05 0.00 38.54 4.52
414 415 7.603963 TTCAACCTTTTTGGAAAAGTTAAGC 57.396 32.000 11.05 0.00 39.71 3.09
417 418 8.151596 AGTGTTTCAACCTTTTTGGAAAAGTTA 58.848 29.630 11.05 0.00 39.71 2.24
418 419 6.995686 AGTGTTTCAACCTTTTTGGAAAAGTT 59.004 30.769 11.05 4.62 39.71 2.66
431 432 2.293399 GCCGAATTCAGTGTTTCAACCT 59.707 45.455 6.22 0.00 0.00 3.50
433 434 2.034053 TGGCCGAATTCAGTGTTTCAAC 59.966 45.455 6.22 0.00 0.00 3.18
435 436 1.606668 GTGGCCGAATTCAGTGTTTCA 59.393 47.619 6.22 0.00 0.00 2.69
436 437 1.068541 GGTGGCCGAATTCAGTGTTTC 60.069 52.381 6.22 0.00 0.00 2.78
510 511 2.190841 CCGTGAAGGCGGTTTTGGT 61.191 57.895 0.00 0.00 46.11 3.67
526 527 2.105128 GACATCAGAGGCGTCCCG 59.895 66.667 2.06 0.00 35.76 5.14
573 574 5.813080 AGATAAAATGGTTCCAACGCTAC 57.187 39.130 0.00 0.00 0.00 3.58
675 676 0.250553 TACGCCAAACTCCAAGTGGG 60.251 55.000 0.00 0.00 35.41 4.61
684 685 6.110033 TGATGTTGTGTATATACGCCAAACT 58.890 36.000 20.85 10.74 35.92 2.66
838 840 3.432933 TGATACCAACGCCGAAAGTTTAC 59.567 43.478 0.00 0.00 0.00 2.01
867 871 4.014406 TGAATGATTGATGAAGCTGTGCT 58.986 39.130 0.00 0.00 42.56 4.40
916 921 3.145551 GCAATGCCTCAGCCCCTG 61.146 66.667 0.00 0.00 38.69 4.45
1155 1179 3.097921 GCCGTAACCCTGGCCGTAT 62.098 63.158 0.00 0.00 45.73 3.06
1371 1395 1.924731 ACGAACCTGTGAGGATGAGA 58.075 50.000 0.00 0.00 37.67 3.27
1394 1418 6.208644 AGAAAAGATGTTGGATTTGTTCGTG 58.791 36.000 0.00 0.00 0.00 4.35
1395 1419 6.391227 AGAAAAGATGTTGGATTTGTTCGT 57.609 33.333 0.00 0.00 0.00 3.85
1396 1420 6.697019 ACAAGAAAAGATGTTGGATTTGTTCG 59.303 34.615 0.00 0.00 36.64 3.95
1439 1482 6.764560 TCGTCTGCAGAGTATACACTATACAA 59.235 38.462 18.89 0.00 42.68 2.41
1440 1483 6.285990 TCGTCTGCAGAGTATACACTATACA 58.714 40.000 18.89 3.19 42.68 2.29
1445 1488 2.946329 CCTCGTCTGCAGAGTATACACT 59.054 50.000 18.89 0.64 37.87 3.55
1446 1489 2.943690 TCCTCGTCTGCAGAGTATACAC 59.056 50.000 18.89 2.69 34.08 2.90
1451 1494 1.407575 CCTCTCCTCGTCTGCAGAGTA 60.408 57.143 18.89 7.24 34.08 2.59
1454 1497 0.038310 TTCCTCTCCTCGTCTGCAGA 59.962 55.000 13.74 13.74 0.00 4.26
1462 1553 2.885861 CACGGGTTCCTCTCCTCG 59.114 66.667 0.00 0.00 0.00 4.63
1806 1897 4.880120 GGGATCGGGGTTAAGAAAGTTAAG 59.120 45.833 0.00 0.00 0.00 1.85
1807 1898 4.623647 CGGGATCGGGGTTAAGAAAGTTAA 60.624 45.833 0.00 0.00 0.00 2.01
1821 1916 0.108804 CGAATATGGACGGGATCGGG 60.109 60.000 0.00 0.00 41.39 5.14
1830 1925 2.153645 TGGATGCATGCGAATATGGAC 58.846 47.619 14.09 0.00 31.02 4.02
1867 2530 3.265791 GGTCCTGATCAGTGATCAACAC 58.734 50.000 30.50 26.87 46.51 3.32
1870 2533 1.482182 CCGGTCCTGATCAGTGATCAA 59.518 52.381 30.50 17.98 46.51 2.57
1871 2534 1.114627 CCGGTCCTGATCAGTGATCA 58.885 55.000 29.39 29.39 45.35 2.92
1872 2536 0.390860 CCCGGTCCTGATCAGTGATC 59.609 60.000 23.75 23.75 39.31 2.92
1873 2537 1.690219 GCCCGGTCCTGATCAGTGAT 61.690 60.000 21.11 4.98 0.00 3.06
1874 2538 2.359169 GCCCGGTCCTGATCAGTGA 61.359 63.158 21.11 14.61 0.00 3.41
1875 2539 2.187946 GCCCGGTCCTGATCAGTG 59.812 66.667 21.11 12.59 0.00 3.66
1876 2540 3.461773 CGCCCGGTCCTGATCAGT 61.462 66.667 21.11 0.00 0.00 3.41
1877 2541 4.899239 GCGCCCGGTCCTGATCAG 62.899 72.222 16.24 16.24 0.00 2.90
1969 2653 3.599792 CTTTCCGTTGCTGCTGCCG 62.600 63.158 13.47 9.95 38.71 5.69
2059 2753 3.857038 ACCGGTGGCAGACGTGTT 61.857 61.111 6.12 0.00 0.00 3.32
2289 2983 2.836981 ACACTTGAGGGAGAAGATCTGG 59.163 50.000 0.00 0.00 0.00 3.86
2295 2989 3.594134 CTGCTAACACTTGAGGGAGAAG 58.406 50.000 0.00 0.00 0.00 2.85
2323 3018 2.022195 CCACAGTTACGCTAGCTAGGA 58.978 52.381 22.10 0.00 0.00 2.94
2350 3045 3.674753 GTGTATGTGAGCAAAAATGGTGC 59.325 43.478 0.00 0.00 42.55 5.01
2370 3065 1.229428 ACCGAATGCACAGTTCAGTG 58.771 50.000 0.00 0.00 42.37 3.66
2471 3168 4.404654 ACGTCGAACCGCGGGTAC 62.405 66.667 31.76 18.73 41.33 3.34
2472 3169 4.101790 GACGTCGAACCGCGGGTA 62.102 66.667 31.76 5.59 41.33 3.69
2518 3216 8.443160 CGATGCATGATTCGGTAGTAATTAATT 58.557 33.333 2.46 5.89 0.00 1.40
2519 3217 7.817478 TCGATGCATGATTCGGTAGTAATTAAT 59.183 33.333 2.46 0.00 36.08 1.40
2520 3218 7.115805 GTCGATGCATGATTCGGTAGTAATTAA 59.884 37.037 2.46 0.00 36.08 1.40
2521 3219 6.584942 GTCGATGCATGATTCGGTAGTAATTA 59.415 38.462 2.46 0.00 36.08 1.40
2522 3220 5.405571 GTCGATGCATGATTCGGTAGTAATT 59.594 40.000 2.46 0.00 36.08 1.40
2600 3314 2.031595 CAGGTGAGGAGATACATCGTCG 60.032 54.545 0.00 0.00 36.99 5.12
2695 3415 3.266636 CGGCCATGTTACAGTGATGTAA 58.733 45.455 2.24 0.00 32.49 2.41
2758 3483 1.368641 TTCGGAGATCAAACGGCATG 58.631 50.000 0.00 0.00 35.04 4.06
2786 3511 2.851263 TTCCACAGTTTAGACGCCAT 57.149 45.000 0.00 0.00 0.00 4.40
2787 3512 2.623878 TTTCCACAGTTTAGACGCCA 57.376 45.000 0.00 0.00 0.00 5.69
2788 3513 5.448632 CCATAATTTCCACAGTTTAGACGCC 60.449 44.000 0.00 0.00 0.00 5.68
2790 3515 6.370442 TGTCCATAATTTCCACAGTTTAGACG 59.630 38.462 0.00 0.00 0.00 4.18
2791 3516 7.681939 TGTCCATAATTTCCACAGTTTAGAC 57.318 36.000 0.00 0.00 0.00 2.59
2793 3518 8.055279 ACATGTCCATAATTTCCACAGTTTAG 57.945 34.615 0.00 0.00 0.00 1.85
2794 3519 8.415950 AACATGTCCATAATTTCCACAGTTTA 57.584 30.769 0.00 0.00 0.00 2.01
2802 3527 5.576447 AACCGAACATGTCCATAATTTCC 57.424 39.130 0.00 0.00 0.00 3.13
2812 3537 2.348666 CCATTCTCGAACCGAACATGTC 59.651 50.000 0.00 0.00 34.74 3.06
2834 3559 1.335496 GCCAGTTCACCTTTGCGTTTA 59.665 47.619 0.00 0.00 0.00 2.01
2837 3562 0.823356 ATGCCAGTTCACCTTTGCGT 60.823 50.000 0.00 0.00 0.00 5.24
2838 3563 0.314935 AATGCCAGTTCACCTTTGCG 59.685 50.000 0.00 0.00 0.00 4.85
2839 3564 1.069049 ACAATGCCAGTTCACCTTTGC 59.931 47.619 0.00 0.00 0.00 3.68
2866 3591 7.799447 CCAAACATGTTTATGATTTTGCTTGTG 59.201 33.333 22.87 6.19 37.73 3.33
2868 3593 7.863666 ACCAAACATGTTTATGATTTTGCTTG 58.136 30.769 22.87 7.23 37.73 4.01
2901 3792 1.973281 AGCCATCCACTGCCGTTTG 60.973 57.895 0.00 0.00 0.00 2.93
2910 3801 2.694628 TGATATTTTGGCAGCCATCCAC 59.305 45.455 17.09 5.97 31.53 4.02
2972 3863 4.698583 ACTAGTAGTACACAAAGGCTCG 57.301 45.455 0.00 0.00 0.00 5.03
3002 3971 1.280421 GGAGAACCATCAGCTTGACCT 59.720 52.381 0.00 0.00 35.97 3.85
3010 3979 3.251479 TCATTGTCGGAGAACCATCAG 57.749 47.619 0.00 0.00 39.69 2.90
3014 3983 1.628340 ACCATCATTGTCGGAGAACCA 59.372 47.619 0.00 0.00 39.69 3.67
3058 4027 1.530323 AAAAACGGATTGGAGTCGGG 58.470 50.000 0.00 0.00 0.00 5.14
3081 4050 2.552315 GGATTGGAGTCACTCGCAAAAA 59.448 45.455 11.36 0.00 29.64 1.94
3082 4051 2.151202 GGATTGGAGTCACTCGCAAAA 58.849 47.619 11.36 0.00 29.64 2.44
3083 4052 1.808411 GGATTGGAGTCACTCGCAAA 58.192 50.000 11.36 1.65 29.64 3.68
3084 4053 0.389817 CGGATTGGAGTCACTCGCAA 60.390 55.000 10.14 10.14 0.00 4.85
3086 4055 1.519455 CCGGATTGGAGTCACTCGC 60.519 63.158 0.00 0.00 42.00 5.03
3087 4056 0.458543 CACCGGATTGGAGTCACTCG 60.459 60.000 9.46 0.00 42.00 4.18
3088 4057 0.608640 ACACCGGATTGGAGTCACTC 59.391 55.000 9.46 0.00 36.81 3.51
3089 4058 0.321671 CACACCGGATTGGAGTCACT 59.678 55.000 9.46 0.00 39.83 3.41
3090 4059 0.673644 CCACACCGGATTGGAGTCAC 60.674 60.000 18.13 0.00 39.83 3.67
3091 4060 1.676968 CCACACCGGATTGGAGTCA 59.323 57.895 18.13 0.00 39.83 3.41
3092 4061 1.745489 GCCACACCGGATTGGAGTC 60.745 63.158 24.78 7.99 39.83 3.36
3093 4062 1.852157 ATGCCACACCGGATTGGAGT 61.852 55.000 24.78 12.18 42.93 3.85
3094 4063 0.680921 AATGCCACACCGGATTGGAG 60.681 55.000 24.78 5.04 42.00 3.86
3095 4064 0.964860 CAATGCCACACCGGATTGGA 60.965 55.000 24.78 13.04 42.00 3.53
3096 4065 1.512230 CAATGCCACACCGGATTGG 59.488 57.895 9.46 15.46 46.41 3.16
3097 4066 1.153784 GCAATGCCACACCGGATTG 60.154 57.895 9.46 7.78 36.31 2.67
3098 4067 0.034574 TAGCAATGCCACACCGGATT 60.035 50.000 9.46 0.00 36.56 3.01
3099 4068 0.034574 TTAGCAATGCCACACCGGAT 60.035 50.000 9.46 0.00 36.56 4.18
3100 4069 0.676466 CTTAGCAATGCCACACCGGA 60.676 55.000 9.46 0.00 36.56 5.14
3101 4070 1.656818 CCTTAGCAATGCCACACCGG 61.657 60.000 0.00 0.00 38.11 5.28
3102 4071 0.676466 TCCTTAGCAATGCCACACCG 60.676 55.000 0.00 0.00 0.00 4.94
3115 4084 1.872773 AGAACTCAGGGGCTCCTTAG 58.127 55.000 12.58 12.58 42.67 2.18
3116 4085 1.909302 CAAGAACTCAGGGGCTCCTTA 59.091 52.381 0.00 0.00 42.67 2.69
3117 4086 0.695347 CAAGAACTCAGGGGCTCCTT 59.305 55.000 0.00 0.00 42.67 3.36
3118 4087 0.474660 ACAAGAACTCAGGGGCTCCT 60.475 55.000 0.00 0.00 46.26 3.69
3119 4088 0.035915 GACAAGAACTCAGGGGCTCC 60.036 60.000 0.00 0.00 0.00 4.70
3120 4089 0.035915 GGACAAGAACTCAGGGGCTC 60.036 60.000 0.00 0.00 0.00 4.70
3121 4090 1.492993 GGGACAAGAACTCAGGGGCT 61.493 60.000 0.00 0.00 0.00 5.19
3122 4091 1.002011 GGGACAAGAACTCAGGGGC 60.002 63.158 0.00 0.00 0.00 5.80
3123 4092 1.685820 GGGGACAAGAACTCAGGGG 59.314 63.158 0.00 0.00 0.00 4.79
3124 4093 1.685820 GGGGGACAAGAACTCAGGG 59.314 63.158 0.00 0.00 0.00 4.45
3143 4112 4.022329 AGCCAACCCGTTATTCAAGAAAAG 60.022 41.667 0.00 0.00 0.00 2.27
3145 4114 3.492337 AGCCAACCCGTTATTCAAGAAA 58.508 40.909 0.00 0.00 0.00 2.52
3151 4120 3.805207 ACAGATAGCCAACCCGTTATTC 58.195 45.455 0.00 0.00 0.00 1.75
3165 4424 2.662700 GCCGACGGACAATACAGATAG 58.337 52.381 20.50 0.00 0.00 2.08
3266 4525 4.991687 GCACTAATATCACTAGACCAAGCC 59.008 45.833 0.00 0.00 0.00 4.35
3278 4537 2.430694 ACAGGCAGACGCACTAATATCA 59.569 45.455 0.00 0.00 41.24 2.15
3289 4548 1.328069 CTCGTACTAGACAGGCAGACG 59.672 57.143 0.00 0.00 0.00 4.18
3292 4551 0.382515 GCCTCGTACTAGACAGGCAG 59.617 60.000 16.25 0.00 44.91 4.85
3295 4554 0.656785 GTCGCCTCGTACTAGACAGG 59.343 60.000 0.00 0.00 32.47 4.00
3343 4602 2.097036 ACCATGTACGACGGAGATTGA 58.903 47.619 0.00 0.00 0.00 2.57
3352 4611 5.629849 GCAATAGTAGATCACCATGTACGAC 59.370 44.000 0.00 0.00 34.56 4.34
3360 4619 3.028130 TCACCGCAATAGTAGATCACCA 58.972 45.455 0.00 0.00 0.00 4.17
3395 4654 6.715347 ACCTGCAAAGACTTGTAGAAAAAT 57.285 33.333 4.75 0.00 45.30 1.82
3399 4658 5.546621 AGTACCTGCAAAGACTTGTAGAA 57.453 39.130 4.75 0.00 45.30 2.10
3406 4667 3.632145 CCAACAAAGTACCTGCAAAGACT 59.368 43.478 0.00 0.00 0.00 3.24
3425 4686 5.766150 ACAACATCGAGAAATTCAACCAA 57.234 34.783 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.