Multiple sequence alignment - TraesCS3A01G437400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G437400 chr3A 100.000 2702 0 0 1 2702 681319757 681317056 0.000000e+00 4990.0
1 TraesCS3A01G437400 chr3A 84.375 928 116 15 824 1737 681328636 681329548 0.000000e+00 883.0
2 TraesCS3A01G437400 chr3A 86.649 764 97 3 979 1738 681396029 681396791 0.000000e+00 841.0
3 TraesCS3A01G437400 chr3D 90.603 2256 133 34 96 2294 544340848 544338615 0.000000e+00 2918.0
4 TraesCS3A01G437400 chr3D 85.249 1383 147 22 315 1683 544278614 544277275 0.000000e+00 1371.0
5 TraesCS3A01G437400 chr3D 84.168 998 125 25 824 1797 544347133 544346145 0.000000e+00 937.0
6 TraesCS3A01G437400 chr3D 87.788 737 87 1 979 1712 544439588 544440324 0.000000e+00 859.0
7 TraesCS3A01G437400 chr3D 93.174 293 19 1 2310 2601 544312438 544312146 1.920000e-116 429.0
8 TraesCS3A01G437400 chr3D 93.269 104 7 0 2599 2702 571973196 571973299 1.300000e-33 154.0
9 TraesCS3A01G437400 chr3D 90.909 110 10 0 2593 2702 582940715 582940824 6.030000e-32 148.0
10 TraesCS3A01G437400 chr3D 95.588 68 3 0 1838 1905 544277217 544277150 2.840000e-20 110.0
11 TraesCS3A01G437400 chr3D 96.774 31 1 0 2355 2385 544276512 544276482 5.000000e-03 52.8
12 TraesCS3A01G437400 chr3B 88.598 1912 159 32 24 1905 720179195 720177313 0.000000e+00 2268.0
13 TraesCS3A01G437400 chr3B 86.117 958 109 19 826 1766 720183414 720182464 0.000000e+00 1011.0
14 TraesCS3A01G437400 chr3B 87.110 737 92 1 979 1712 720263052 720263788 0.000000e+00 832.0
15 TraesCS3A01G437400 chr3B 100.000 36 0 0 3 38 720180645 720180610 1.740000e-07 67.6
16 TraesCS3A01G437400 chr1B 78.832 274 55 2 316 589 423211563 423211833 5.940000e-42 182.0
17 TraesCS3A01G437400 chr1B 75.417 240 51 7 350 586 600981509 600981275 2.840000e-20 110.0
18 TraesCS3A01G437400 chr5B 77.419 279 60 3 317 593 650178717 650178440 2.150000e-36 163.0
19 TraesCS3A01G437400 chr7D 92.035 113 7 1 2590 2702 104280897 104281007 1.000000e-34 158.0
20 TraesCS3A01G437400 chr7D 76.793 237 53 2 326 561 178011404 178011169 6.070000e-27 132.0
21 TraesCS3A01G437400 chrUn 93.269 104 7 0 2599 2702 359198258 359198361 1.300000e-33 154.0
22 TraesCS3A01G437400 chrUn 93.269 104 7 0 2599 2702 386736835 386736732 1.300000e-33 154.0
23 TraesCS3A01G437400 chr4A 94.898 98 5 0 2605 2702 63433002 63432905 1.300000e-33 154.0
24 TraesCS3A01G437400 chr5D 93.204 103 7 0 2600 2702 333334188 333334290 4.660000e-33 152.0
25 TraesCS3A01G437400 chr5D 94.059 101 5 1 2602 2702 543723527 543723626 4.660000e-33 152.0
26 TraesCS3A01G437400 chr6A 90.265 113 9 2 2592 2702 606568196 606568084 2.170000e-31 147.0
27 TraesCS3A01G437400 chr6A 76.344 279 60 5 316 592 213589654 213589380 7.800000e-31 145.0
28 TraesCS3A01G437400 chr1A 76.667 270 59 2 315 580 5827589 5827320 2.170000e-31 147.0
29 TraesCS3A01G437400 chr1A 78.212 179 37 2 315 493 573071369 573071545 2.200000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G437400 chr3A 681317056 681319757 2701 True 4990.000000 4990 100.000000 1 2702 1 chr3A.!!$R1 2701
1 TraesCS3A01G437400 chr3A 681328636 681329548 912 False 883.000000 883 84.375000 824 1737 1 chr3A.!!$F1 913
2 TraesCS3A01G437400 chr3A 681396029 681396791 762 False 841.000000 841 86.649000 979 1738 1 chr3A.!!$F2 759
3 TraesCS3A01G437400 chr3D 544338615 544340848 2233 True 2918.000000 2918 90.603000 96 2294 1 chr3D.!!$R2 2198
4 TraesCS3A01G437400 chr3D 544346145 544347133 988 True 937.000000 937 84.168000 824 1797 1 chr3D.!!$R3 973
5 TraesCS3A01G437400 chr3D 544439588 544440324 736 False 859.000000 859 87.788000 979 1712 1 chr3D.!!$F1 733
6 TraesCS3A01G437400 chr3D 544276482 544278614 2132 True 511.266667 1371 92.537000 315 2385 3 chr3D.!!$R4 2070
7 TraesCS3A01G437400 chr3B 720177313 720183414 6101 True 1115.533333 2268 91.571667 3 1905 3 chr3B.!!$R1 1902
8 TraesCS3A01G437400 chr3B 720263052 720263788 736 False 832.000000 832 87.110000 979 1712 1 chr3B.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 4420 0.183492 ACATCCATGCGCTTATGGGT 59.817 50.0 22.57 15.53 46.16 4.51 F
467 4677 0.249155 AGGCGTTTCGAAGTTGACGA 60.249 50.0 20.84 0.00 37.69 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 5688 1.228245 TTTCCCACCAGAGCACTGC 60.228 57.895 5.52 0.0 42.25 4.40 R
2436 6966 1.661463 ACAAGGAGGGAGAATGCTCA 58.339 50.000 2.29 0.0 43.14 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 2806 4.710324 TCCGACACCAAACTTTTATGAGT 58.290 39.130 0.00 0.00 0.00 3.41
39 2807 5.127491 TCCGACACCAAACTTTTATGAGTT 58.873 37.500 0.00 0.00 41.44 3.01
62 4259 5.981088 TGCAAATAGTGACCAACATCATT 57.019 34.783 0.00 0.00 0.00 2.57
66 4263 8.530311 TGCAAATAGTGACCAACATCATTATTT 58.470 29.630 9.27 9.27 45.22 1.40
118 4315 7.385778 ACTAGAGTTTCTTAGAGTGTAGCAG 57.614 40.000 0.00 0.00 0.00 4.24
129 4327 1.208052 AGTGTAGCAGTGTAGCCATGG 59.792 52.381 7.63 7.63 34.23 3.66
136 4334 2.292267 CAGTGTAGCCATGGATTGTCC 58.708 52.381 18.40 0.00 36.96 4.02
168 4375 3.819564 AAAAAGTTGGAACTGGAAGCC 57.180 42.857 0.00 0.00 39.66 4.35
169 4376 1.704641 AAAGTTGGAACTGGAAGCCC 58.295 50.000 0.00 0.00 39.66 5.19
212 4420 0.183492 ACATCCATGCGCTTATGGGT 59.817 50.000 22.57 15.53 46.16 4.51
222 4430 2.300437 GCGCTTATGGGTCCTATCTTCT 59.700 50.000 0.00 0.00 0.00 2.85
223 4431 3.510360 GCGCTTATGGGTCCTATCTTCTA 59.490 47.826 0.00 0.00 0.00 2.10
225 4433 5.337652 GCGCTTATGGGTCCTATCTTCTATT 60.338 44.000 0.00 0.00 0.00 1.73
226 4434 6.702329 CGCTTATGGGTCCTATCTTCTATTT 58.298 40.000 0.00 0.00 0.00 1.40
227 4435 7.162082 CGCTTATGGGTCCTATCTTCTATTTT 58.838 38.462 0.00 0.00 0.00 1.82
228 4436 7.661847 CGCTTATGGGTCCTATCTTCTATTTTT 59.338 37.037 0.00 0.00 0.00 1.94
229 4437 9.004717 GCTTATGGGTCCTATCTTCTATTTTTC 57.995 37.037 0.00 0.00 0.00 2.29
230 4438 9.209175 CTTATGGGTCCTATCTTCTATTTTTCG 57.791 37.037 0.00 0.00 0.00 3.46
231 4439 5.365619 TGGGTCCTATCTTCTATTTTTCGC 58.634 41.667 0.00 0.00 0.00 4.70
232 4440 4.755629 GGGTCCTATCTTCTATTTTTCGCC 59.244 45.833 0.00 0.00 0.00 5.54
233 4441 5.365619 GGTCCTATCTTCTATTTTTCGCCA 58.634 41.667 0.00 0.00 0.00 5.69
234 4442 5.820947 GGTCCTATCTTCTATTTTTCGCCAA 59.179 40.000 0.00 0.00 0.00 4.52
235 4443 6.317893 GGTCCTATCTTCTATTTTTCGCCAAA 59.682 38.462 0.00 0.00 0.00 3.28
236 4444 7.148137 GGTCCTATCTTCTATTTTTCGCCAAAA 60.148 37.037 0.00 0.00 38.76 2.44
237 4445 8.241367 GTCCTATCTTCTATTTTTCGCCAAAAA 58.759 33.333 4.41 4.41 43.92 1.94
268 4476 7.692908 TCACTTTCTATTTTTCGCCAAAAAG 57.307 32.000 7.97 0.00 43.22 2.27
286 4494 6.438763 CAAAAAGAGGTTTCGCTTTCTACAT 58.561 36.000 0.00 0.00 41.09 2.29
289 4497 4.642429 AGAGGTTTCGCTTTCTACATGTT 58.358 39.130 2.30 0.00 0.00 2.71
300 4508 8.280497 TCGCTTTCTACATGTTAGTTTTCTTTC 58.720 33.333 2.30 0.00 0.00 2.62
310 4518 9.374960 CATGTTAGTTTTCTTTCTCTTTCTTCG 57.625 33.333 0.00 0.00 0.00 3.79
328 4536 2.907634 TCGAGGCAGTACAAACACAAA 58.092 42.857 0.00 0.00 0.00 2.83
362 4572 5.052693 ACACGTATACACTCACCCCTATA 57.947 43.478 3.32 0.00 0.00 1.31
364 4574 5.300286 ACACGTATACACTCACCCCTATAAC 59.700 44.000 3.32 0.00 0.00 1.89
373 4583 5.479375 CACTCACCCCTATAACCGTATACAT 59.521 44.000 3.32 0.00 0.00 2.29
387 4597 4.262463 CCGTATACATGCACATCCTACCTT 60.262 45.833 3.32 0.00 0.00 3.50
405 4615 3.260884 ACCTTTATGAGCACCTTCGAGAA 59.739 43.478 0.00 0.00 0.00 2.87
413 4623 2.300437 AGCACCTTCGAGAAACTAAGCT 59.700 45.455 0.00 0.00 0.00 3.74
454 4664 7.709613 AGATTTTATGAAGTTATCGTAGGCGTT 59.290 33.333 0.00 0.00 39.49 4.84
458 4668 3.119884 TGAAGTTATCGTAGGCGTTTCGA 60.120 43.478 8.34 8.34 39.49 3.71
467 4677 0.249155 AGGCGTTTCGAAGTTGACGA 60.249 50.000 20.84 0.00 37.69 4.20
485 4695 3.984508 CGAAAGCGTCTCCTCCTATTA 57.015 47.619 0.00 0.00 0.00 0.98
493 4703 2.029623 TCTCCTCCTATTAAACGCGCT 58.970 47.619 5.73 0.00 0.00 5.92
520 4730 7.038659 CACCGCAAATCCTTAAATAAATCCAA 58.961 34.615 0.00 0.00 0.00 3.53
579 4792 9.483489 TGAAATAAGAATACCACTGTACTCCTA 57.517 33.333 0.00 0.00 0.00 2.94
597 4810 5.416952 ACTCCTAAACATCCAAGCATTTCAG 59.583 40.000 0.00 0.00 0.00 3.02
655 4868 0.669625 GGGTCAGTGGACGTAGCAAC 60.670 60.000 0.00 0.00 45.28 4.17
703 4917 3.673594 CGGCACAAAGATCGTCTCTAACT 60.674 47.826 0.00 0.00 32.41 2.24
704 4918 4.246458 GGCACAAAGATCGTCTCTAACTT 58.754 43.478 0.00 0.00 32.41 2.66
732 4946 0.528466 CACATGTGACGCCGAGCTAT 60.528 55.000 21.64 0.00 0.00 2.97
733 4947 1.029681 ACATGTGACGCCGAGCTATA 58.970 50.000 0.00 0.00 0.00 1.31
878 5102 5.984233 TTGCGCTATATAAACAACCAGAG 57.016 39.130 9.73 0.00 0.00 3.35
880 5104 3.807622 GCGCTATATAAACAACCAGAGCA 59.192 43.478 0.00 0.00 0.00 4.26
900 5125 7.435488 CAGAGCAAAGCTATATACGTACACTTT 59.565 37.037 0.00 1.11 39.88 2.66
924 5172 6.521162 TCAAACTGAGTTAAGAGCACATACA 58.479 36.000 0.00 0.00 0.00 2.29
942 5190 3.131709 ACATACACAGCAGAGCAAACT 57.868 42.857 0.00 0.00 0.00 2.66
950 5204 1.873591 AGCAGAGCAAACTGTTTACGG 59.126 47.619 5.31 3.41 39.73 4.02
1008 5265 2.311688 GATCCAAGACGATGGCCGGT 62.312 60.000 1.90 0.00 43.93 5.28
1275 5535 4.936081 CTCCCCGCGGACCCCTAT 62.936 72.222 30.73 0.00 33.32 2.57
1309 5569 4.858680 GCTTCTGGGCCGCCTACC 62.859 72.222 9.86 0.00 0.00 3.18
1317 5577 3.593794 GCCGCCTACCTCGACGAT 61.594 66.667 0.00 0.00 0.00 3.73
1605 5865 0.323542 AGAGGTTCGTGGAGACGGAT 60.324 55.000 0.00 0.00 46.11 4.18
1800 6069 1.300620 CAGTGTCGTCGCTTTCCCA 60.301 57.895 0.00 0.00 31.46 4.37
1916 6260 3.631227 CCAGTAGTACGGTAGGAGGAAAG 59.369 52.174 0.00 0.00 0.00 2.62
1955 6430 9.520515 AGTCTTGATATTTTTGTATGTCCAAGT 57.479 29.630 0.00 0.00 0.00 3.16
1990 6465 6.509418 AAGTGCAAGTTTAGTTCAGTGAAA 57.491 33.333 7.25 0.00 0.00 2.69
2099 6602 7.636359 GTCAAGTTACTGCGATATTGAACAATC 59.364 37.037 3.23 0.00 32.50 2.67
2294 6798 2.979676 CGTGTGCAGCACATGGGT 60.980 61.111 32.38 0.00 46.32 4.51
2295 6799 2.646719 GTGTGCAGCACATGGGTG 59.353 61.111 30.53 2.88 46.32 4.61
2296 6800 2.195411 TGTGCAGCACATGGGTGT 59.805 55.556 24.84 0.00 46.95 4.16
2305 6809 3.322514 ACATGGGTGTGCAGTGTAC 57.677 52.632 4.15 4.15 37.14 2.90
2306 6810 0.764890 ACATGGGTGTGCAGTGTACT 59.235 50.000 12.78 0.00 37.14 2.73
2307 6811 1.974957 ACATGGGTGTGCAGTGTACTA 59.025 47.619 12.78 0.00 37.14 1.82
2308 6812 2.370519 ACATGGGTGTGCAGTGTACTAA 59.629 45.455 12.78 0.00 37.14 2.24
2318 6822 8.985805 GGTGTGCAGTGTACTAATAATAATACC 58.014 37.037 12.78 3.98 0.00 2.73
2348 6852 1.990563 GCAATCTCATTTGCTGTGCAC 59.009 47.619 10.75 10.75 46.66 4.57
2350 6854 3.644823 CAATCTCATTTGCTGTGCACAA 58.355 40.909 21.98 6.15 38.71 3.33
2352 6856 2.300433 TCTCATTTGCTGTGCACAACT 58.700 42.857 21.98 0.00 38.71 3.16
2386 6916 9.995003 TTTATGGCCAATAATATGTTTCATTCC 57.005 29.630 10.96 0.00 30.74 3.01
2387 6917 7.615039 ATGGCCAATAATATGTTTCATTCCA 57.385 32.000 10.96 0.00 0.00 3.53
2388 6918 6.815089 TGGCCAATAATATGTTTCATTCCAC 58.185 36.000 0.61 0.00 0.00 4.02
2389 6919 6.183360 TGGCCAATAATATGTTTCATTCCACC 60.183 38.462 0.61 0.00 0.00 4.61
2390 6920 6.183360 GGCCAATAATATGTTTCATTCCACCA 60.183 38.462 0.00 0.00 0.00 4.17
2391 6921 7.271511 GCCAATAATATGTTTCATTCCACCAA 58.728 34.615 0.00 0.00 0.00 3.67
2392 6922 7.439056 GCCAATAATATGTTTCATTCCACCAAG 59.561 37.037 0.00 0.00 0.00 3.61
2393 6923 8.694540 CCAATAATATGTTTCATTCCACCAAGA 58.305 33.333 0.00 0.00 0.00 3.02
2397 6927 4.764679 TGTTTCATTCCACCAAGAATCG 57.235 40.909 0.00 0.00 34.19 3.34
2398 6928 4.141287 TGTTTCATTCCACCAAGAATCGT 58.859 39.130 0.00 0.00 34.19 3.73
2399 6929 4.023279 TGTTTCATTCCACCAAGAATCGTG 60.023 41.667 0.00 0.00 34.19 4.35
2400 6930 3.694043 TCATTCCACCAAGAATCGTGA 57.306 42.857 0.00 0.00 34.19 4.35
2401 6931 3.334691 TCATTCCACCAAGAATCGTGAC 58.665 45.455 0.00 0.00 34.19 3.67
2402 6932 2.920724 TTCCACCAAGAATCGTGACA 57.079 45.000 0.00 0.00 31.36 3.58
2403 6933 2.455674 TCCACCAAGAATCGTGACAG 57.544 50.000 0.00 0.00 31.36 3.51
2404 6934 1.691976 TCCACCAAGAATCGTGACAGT 59.308 47.619 0.00 0.00 31.36 3.55
2405 6935 2.104111 TCCACCAAGAATCGTGACAGTT 59.896 45.455 0.00 0.00 31.36 3.16
2406 6936 3.322541 TCCACCAAGAATCGTGACAGTTA 59.677 43.478 0.00 0.00 31.36 2.24
2407 6937 3.432252 CCACCAAGAATCGTGACAGTTAC 59.568 47.826 0.00 0.00 31.36 2.50
2408 6938 4.055360 CACCAAGAATCGTGACAGTTACA 58.945 43.478 0.00 0.00 31.36 2.41
2409 6939 4.509970 CACCAAGAATCGTGACAGTTACAA 59.490 41.667 0.00 0.00 31.36 2.41
2410 6940 5.007234 CACCAAGAATCGTGACAGTTACAAA 59.993 40.000 0.00 0.00 31.36 2.83
2411 6941 5.236478 ACCAAGAATCGTGACAGTTACAAAG 59.764 40.000 0.00 0.00 0.00 2.77
2412 6942 5.465390 CCAAGAATCGTGACAGTTACAAAGA 59.535 40.000 0.00 0.00 0.00 2.52
2413 6943 6.018262 CCAAGAATCGTGACAGTTACAAAGAA 60.018 38.462 0.00 0.00 0.00 2.52
2414 6944 6.771188 AGAATCGTGACAGTTACAAAGAAG 57.229 37.500 0.00 0.00 0.00 2.85
2415 6945 4.992381 ATCGTGACAGTTACAAAGAAGC 57.008 40.909 0.00 0.00 0.00 3.86
2416 6946 3.787785 TCGTGACAGTTACAAAGAAGCA 58.212 40.909 0.00 0.00 0.00 3.91
2417 6947 4.377021 TCGTGACAGTTACAAAGAAGCAT 58.623 39.130 0.00 0.00 0.00 3.79
2418 6948 4.814234 TCGTGACAGTTACAAAGAAGCATT 59.186 37.500 0.00 0.00 0.00 3.56
2419 6949 5.295787 TCGTGACAGTTACAAAGAAGCATTT 59.704 36.000 0.00 0.00 0.00 2.32
2420 6950 5.971202 CGTGACAGTTACAAAGAAGCATTTT 59.029 36.000 0.00 0.00 0.00 1.82
2421 6951 7.011576 TCGTGACAGTTACAAAGAAGCATTTTA 59.988 33.333 0.00 0.00 0.00 1.52
2422 6952 7.642194 CGTGACAGTTACAAAGAAGCATTTTAA 59.358 33.333 0.00 0.00 0.00 1.52
2423 6953 9.463443 GTGACAGTTACAAAGAAGCATTTTAAT 57.537 29.630 0.00 0.00 0.00 1.40
2424 6954 9.677567 TGACAGTTACAAAGAAGCATTTTAATC 57.322 29.630 0.00 0.00 0.00 1.75
2425 6955 9.129209 GACAGTTACAAAGAAGCATTTTAATCC 57.871 33.333 0.00 0.00 0.00 3.01
2426 6956 8.637986 ACAGTTACAAAGAAGCATTTTAATCCA 58.362 29.630 0.00 0.00 0.00 3.41
2427 6957 9.132521 CAGTTACAAAGAAGCATTTTAATCCAG 57.867 33.333 0.00 0.00 0.00 3.86
2428 6958 8.306761 AGTTACAAAGAAGCATTTTAATCCAGG 58.693 33.333 0.00 0.00 0.00 4.45
2429 6959 6.670695 ACAAAGAAGCATTTTAATCCAGGT 57.329 33.333 0.00 0.00 0.00 4.00
2430 6960 7.066307 ACAAAGAAGCATTTTAATCCAGGTT 57.934 32.000 0.00 0.00 0.00 3.50
2431 6961 7.154656 ACAAAGAAGCATTTTAATCCAGGTTC 58.845 34.615 0.00 0.00 37.07 3.62
2432 6962 6.916360 AAGAAGCATTTTAATCCAGGTTCA 57.084 33.333 0.00 0.00 38.70 3.18
2433 6963 6.916360 AGAAGCATTTTAATCCAGGTTCAA 57.084 33.333 0.00 0.00 38.70 2.69
2434 6964 7.486407 AGAAGCATTTTAATCCAGGTTCAAT 57.514 32.000 0.00 0.00 38.70 2.57
2435 6965 7.910584 AGAAGCATTTTAATCCAGGTTCAATT 58.089 30.769 0.00 0.00 38.70 2.32
2436 6966 8.377799 AGAAGCATTTTAATCCAGGTTCAATTT 58.622 29.630 0.00 0.00 38.70 1.82
2437 6967 7.910441 AGCATTTTAATCCAGGTTCAATTTG 57.090 32.000 0.00 0.00 0.00 2.32
2438 6968 7.678837 AGCATTTTAATCCAGGTTCAATTTGA 58.321 30.769 0.00 0.00 0.00 2.69
2439 6969 7.820872 AGCATTTTAATCCAGGTTCAATTTGAG 59.179 33.333 0.00 0.00 0.00 3.02
2440 6970 7.413328 GCATTTTAATCCAGGTTCAATTTGAGC 60.413 37.037 4.79 4.79 0.00 4.26
2441 6971 6.662865 TTTAATCCAGGTTCAATTTGAGCA 57.337 33.333 14.14 0.00 28.47 4.26
2442 6972 6.855763 TTAATCCAGGTTCAATTTGAGCAT 57.144 33.333 14.14 5.18 28.47 3.79
2443 6973 5.750352 AATCCAGGTTCAATTTGAGCATT 57.250 34.783 14.14 3.84 28.47 3.56
2444 6974 4.789012 TCCAGGTTCAATTTGAGCATTC 57.211 40.909 14.14 0.00 28.47 2.67
2445 6975 4.410099 TCCAGGTTCAATTTGAGCATTCT 58.590 39.130 14.14 1.13 28.47 2.40
2446 6976 4.460382 TCCAGGTTCAATTTGAGCATTCTC 59.540 41.667 14.14 0.00 39.78 2.87
2447 6977 4.381292 CCAGGTTCAATTTGAGCATTCTCC 60.381 45.833 14.14 4.15 38.58 3.71
2448 6978 3.766051 AGGTTCAATTTGAGCATTCTCCC 59.234 43.478 14.14 0.00 38.58 4.30
2449 6979 3.766051 GGTTCAATTTGAGCATTCTCCCT 59.234 43.478 14.14 0.00 38.58 4.20
2450 6980 4.142293 GGTTCAATTTGAGCATTCTCCCTC 60.142 45.833 14.14 0.00 38.58 4.30
2451 6981 3.624777 TCAATTTGAGCATTCTCCCTCC 58.375 45.455 0.00 0.00 38.58 4.30
2452 6982 3.267812 TCAATTTGAGCATTCTCCCTCCT 59.732 43.478 0.00 0.00 38.58 3.69
2453 6983 4.021916 CAATTTGAGCATTCTCCCTCCTT 58.978 43.478 0.00 0.00 38.58 3.36
2454 6984 2.795231 TTGAGCATTCTCCCTCCTTG 57.205 50.000 0.00 0.00 38.58 3.61
2455 6985 1.661463 TGAGCATTCTCCCTCCTTGT 58.339 50.000 0.00 0.00 38.58 3.16
2456 6986 1.988107 TGAGCATTCTCCCTCCTTGTT 59.012 47.619 0.00 0.00 38.58 2.83
2457 6987 3.181329 TGAGCATTCTCCCTCCTTGTTA 58.819 45.455 0.00 0.00 38.58 2.41
2458 6988 3.587061 TGAGCATTCTCCCTCCTTGTTAA 59.413 43.478 0.00 0.00 38.58 2.01
2459 6989 3.942115 GAGCATTCTCCCTCCTTGTTAAC 59.058 47.826 0.00 0.00 33.19 2.01
2460 6990 3.589288 AGCATTCTCCCTCCTTGTTAACT 59.411 43.478 7.22 0.00 0.00 2.24
2461 6991 4.043435 AGCATTCTCCCTCCTTGTTAACTT 59.957 41.667 7.22 0.00 0.00 2.66
2462 6992 4.396478 GCATTCTCCCTCCTTGTTAACTTC 59.604 45.833 7.22 0.00 0.00 3.01
2463 6993 5.560724 CATTCTCCCTCCTTGTTAACTTCA 58.439 41.667 7.22 0.00 0.00 3.02
2464 6994 4.891992 TCTCCCTCCTTGTTAACTTCAG 57.108 45.455 7.22 0.49 0.00 3.02
2465 6995 3.008049 TCTCCCTCCTTGTTAACTTCAGC 59.992 47.826 7.22 0.00 0.00 4.26
2466 6996 2.979678 TCCCTCCTTGTTAACTTCAGCT 59.020 45.455 7.22 0.00 0.00 4.24
2467 6997 3.394606 TCCCTCCTTGTTAACTTCAGCTT 59.605 43.478 7.22 0.00 0.00 3.74
2468 6998 4.141251 TCCCTCCTTGTTAACTTCAGCTTT 60.141 41.667 7.22 0.00 0.00 3.51
2469 6999 4.022849 CCCTCCTTGTTAACTTCAGCTTTG 60.023 45.833 7.22 0.00 0.00 2.77
2470 7000 4.821805 CCTCCTTGTTAACTTCAGCTTTGA 59.178 41.667 7.22 0.00 0.00 2.69
2471 7001 5.278022 CCTCCTTGTTAACTTCAGCTTTGAC 60.278 44.000 7.22 0.00 0.00 3.18
2472 7002 5.189928 TCCTTGTTAACTTCAGCTTTGACA 58.810 37.500 7.22 0.00 0.00 3.58
2473 7003 5.065988 TCCTTGTTAACTTCAGCTTTGACAC 59.934 40.000 7.22 0.00 0.00 3.67
2474 7004 4.893424 TGTTAACTTCAGCTTTGACACC 57.107 40.909 7.22 0.00 0.00 4.16
2475 7005 4.265893 TGTTAACTTCAGCTTTGACACCA 58.734 39.130 7.22 0.00 0.00 4.17
2476 7006 4.702612 TGTTAACTTCAGCTTTGACACCAA 59.297 37.500 7.22 0.00 0.00 3.67
2477 7007 5.163663 TGTTAACTTCAGCTTTGACACCAAG 60.164 40.000 7.22 0.00 33.23 3.61
2478 7008 3.004752 ACTTCAGCTTTGACACCAAGT 57.995 42.857 0.00 0.00 33.23 3.16
2491 7021 5.803020 GACACCAAGTCATCCAAGATAAC 57.197 43.478 0.00 0.00 46.77 1.89
2492 7022 5.491982 GACACCAAGTCATCCAAGATAACT 58.508 41.667 0.00 0.00 46.77 2.24
2493 7023 5.491982 ACACCAAGTCATCCAAGATAACTC 58.508 41.667 0.00 0.00 0.00 3.01
2494 7024 5.249393 ACACCAAGTCATCCAAGATAACTCT 59.751 40.000 0.00 0.00 0.00 3.24
2495 7025 5.583854 CACCAAGTCATCCAAGATAACTCTG 59.416 44.000 0.00 0.00 0.00 3.35
2496 7026 5.485353 ACCAAGTCATCCAAGATAACTCTGA 59.515 40.000 0.00 0.00 0.00 3.27
2497 7027 6.013379 ACCAAGTCATCCAAGATAACTCTGAA 60.013 38.462 0.00 0.00 0.00 3.02
2498 7028 6.314896 CCAAGTCATCCAAGATAACTCTGAAC 59.685 42.308 0.00 0.00 0.00 3.18
2499 7029 6.865834 AGTCATCCAAGATAACTCTGAACT 57.134 37.500 0.00 0.00 0.00 3.01
2500 7030 7.962995 AGTCATCCAAGATAACTCTGAACTA 57.037 36.000 0.00 0.00 0.00 2.24
2501 7031 8.367660 AGTCATCCAAGATAACTCTGAACTAA 57.632 34.615 0.00 0.00 0.00 2.24
2502 7032 8.816894 AGTCATCCAAGATAACTCTGAACTAAA 58.183 33.333 0.00 0.00 0.00 1.85
2503 7033 8.874816 GTCATCCAAGATAACTCTGAACTAAAC 58.125 37.037 0.00 0.00 0.00 2.01
2504 7034 8.816894 TCATCCAAGATAACTCTGAACTAAACT 58.183 33.333 0.00 0.00 0.00 2.66
2505 7035 8.877779 CATCCAAGATAACTCTGAACTAAACTG 58.122 37.037 0.00 0.00 0.00 3.16
2506 7036 8.190326 TCCAAGATAACTCTGAACTAAACTGA 57.810 34.615 0.00 0.00 0.00 3.41
2507 7037 8.816894 TCCAAGATAACTCTGAACTAAACTGAT 58.183 33.333 0.00 0.00 0.00 2.90
2508 7038 8.877779 CCAAGATAACTCTGAACTAAACTGATG 58.122 37.037 0.00 0.00 0.00 3.07
2509 7039 9.645059 CAAGATAACTCTGAACTAAACTGATGA 57.355 33.333 0.00 0.00 0.00 2.92
2511 7041 9.646427 AGATAACTCTGAACTAAACTGATGAAC 57.354 33.333 0.00 0.00 0.00 3.18
2512 7042 9.424319 GATAACTCTGAACTAAACTGATGAACA 57.576 33.333 0.00 0.00 0.00 3.18
2513 7043 9.778741 ATAACTCTGAACTAAACTGATGAACAA 57.221 29.630 0.00 0.00 0.00 2.83
2514 7044 8.682936 AACTCTGAACTAAACTGATGAACAAT 57.317 30.769 0.00 0.00 0.00 2.71
2515 7045 8.316640 ACTCTGAACTAAACTGATGAACAATC 57.683 34.615 0.00 0.00 35.67 2.67
2516 7046 8.153550 ACTCTGAACTAAACTGATGAACAATCT 58.846 33.333 0.00 0.00 36.15 2.40
2517 7047 8.539770 TCTGAACTAAACTGATGAACAATCTC 57.460 34.615 0.00 0.00 36.15 2.75
2518 7048 8.150296 TCTGAACTAAACTGATGAACAATCTCA 58.850 33.333 0.00 0.00 36.15 3.27
2519 7049 8.853077 TGAACTAAACTGATGAACAATCTCAT 57.147 30.769 0.00 0.00 38.79 2.90
2520 7050 9.288576 TGAACTAAACTGATGAACAATCTCATT 57.711 29.630 0.00 0.00 36.15 2.57
2526 7056 8.641498 AACTGATGAACAATCTCATTTTAGGT 57.359 30.769 0.00 0.00 36.15 3.08
2527 7057 8.048534 ACTGATGAACAATCTCATTTTAGGTG 57.951 34.615 0.00 0.00 36.15 4.00
2528 7058 6.855836 TGATGAACAATCTCATTTTAGGTGC 58.144 36.000 0.00 0.00 36.15 5.01
2529 7059 6.433716 TGATGAACAATCTCATTTTAGGTGCA 59.566 34.615 0.00 0.00 36.15 4.57
2530 7060 6.839124 TGAACAATCTCATTTTAGGTGCAT 57.161 33.333 0.00 0.00 0.00 3.96
2531 7061 6.855836 TGAACAATCTCATTTTAGGTGCATC 58.144 36.000 0.00 0.00 0.00 3.91
2532 7062 6.433716 TGAACAATCTCATTTTAGGTGCATCA 59.566 34.615 0.00 0.00 0.00 3.07
2533 7063 6.446781 ACAATCTCATTTTAGGTGCATCAG 57.553 37.500 0.00 0.00 0.00 2.90
2534 7064 6.182627 ACAATCTCATTTTAGGTGCATCAGA 58.817 36.000 0.00 0.00 0.00 3.27
2535 7065 6.832384 ACAATCTCATTTTAGGTGCATCAGAT 59.168 34.615 0.00 0.00 0.00 2.90
2536 7066 7.341256 ACAATCTCATTTTAGGTGCATCAGATT 59.659 33.333 0.00 0.00 0.00 2.40
2537 7067 7.893124 ATCTCATTTTAGGTGCATCAGATTT 57.107 32.000 0.00 0.00 0.00 2.17
2538 7068 8.985315 ATCTCATTTTAGGTGCATCAGATTTA 57.015 30.769 0.00 0.00 0.00 1.40
2539 7069 8.442632 TCTCATTTTAGGTGCATCAGATTTAG 57.557 34.615 0.00 0.00 0.00 1.85
2540 7070 7.012704 TCTCATTTTAGGTGCATCAGATTTAGC 59.987 37.037 0.00 0.00 0.00 3.09
2541 7071 6.830324 TCATTTTAGGTGCATCAGATTTAGCT 59.170 34.615 0.00 0.00 0.00 3.32
2542 7072 6.441093 TTTTAGGTGCATCAGATTTAGCTG 57.559 37.500 0.00 0.00 37.24 4.24
2543 7073 2.928334 AGGTGCATCAGATTTAGCTGG 58.072 47.619 0.00 0.00 36.55 4.85
2544 7074 1.336125 GGTGCATCAGATTTAGCTGGC 59.664 52.381 0.00 0.00 36.55 4.85
2545 7075 2.019249 GTGCATCAGATTTAGCTGGCA 58.981 47.619 0.00 0.00 36.55 4.92
2546 7076 2.033049 GTGCATCAGATTTAGCTGGCAG 59.967 50.000 10.94 10.94 35.00 4.85
2547 7077 2.092807 TGCATCAGATTTAGCTGGCAGA 60.093 45.455 20.86 0.00 36.55 4.26
2548 7078 3.147629 GCATCAGATTTAGCTGGCAGAT 58.852 45.455 20.86 16.07 36.55 2.90
2549 7079 3.568853 GCATCAGATTTAGCTGGCAGATT 59.431 43.478 20.86 7.99 36.55 2.40
2550 7080 4.556898 GCATCAGATTTAGCTGGCAGATTG 60.557 45.833 20.86 6.89 36.55 2.67
2551 7081 3.548770 TCAGATTTAGCTGGCAGATTGG 58.451 45.455 20.86 0.00 36.55 3.16
2552 7082 3.054139 TCAGATTTAGCTGGCAGATTGGT 60.054 43.478 20.86 0.34 36.55 3.67
2553 7083 3.314635 CAGATTTAGCTGGCAGATTGGTC 59.685 47.826 20.86 10.50 32.26 4.02
2554 7084 2.877097 TTTAGCTGGCAGATTGGTCA 57.123 45.000 20.86 0.00 0.00 4.02
2555 7085 3.370840 TTTAGCTGGCAGATTGGTCAT 57.629 42.857 20.86 0.00 0.00 3.06
2556 7086 2.336945 TAGCTGGCAGATTGGTCATG 57.663 50.000 20.86 0.00 0.00 3.07
2557 7087 0.395311 AGCTGGCAGATTGGTCATGG 60.395 55.000 20.86 0.00 0.00 3.66
2558 7088 1.389609 GCTGGCAGATTGGTCATGGG 61.390 60.000 20.86 0.00 0.00 4.00
2559 7089 0.754217 CTGGCAGATTGGTCATGGGG 60.754 60.000 9.42 0.00 0.00 4.96
2560 7090 2.129785 GGCAGATTGGTCATGGGGC 61.130 63.158 0.00 0.00 0.00 5.80
2561 7091 1.380246 GCAGATTGGTCATGGGGCA 60.380 57.895 0.00 0.00 0.00 5.36
2562 7092 0.757935 GCAGATTGGTCATGGGGCAT 60.758 55.000 0.00 0.00 0.00 4.40
2563 7093 1.325355 CAGATTGGTCATGGGGCATC 58.675 55.000 0.00 0.00 0.00 3.91
2564 7094 0.179009 AGATTGGTCATGGGGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
2565 7095 0.466189 GATTGGTCATGGGGCATCGT 60.466 55.000 0.00 0.00 0.00 3.73
2566 7096 0.752743 ATTGGTCATGGGGCATCGTG 60.753 55.000 0.00 0.00 0.00 4.35
2567 7097 2.135903 TTGGTCATGGGGCATCGTGT 62.136 55.000 0.00 0.00 0.00 4.49
2568 7098 1.268283 TGGTCATGGGGCATCGTGTA 61.268 55.000 0.00 0.00 0.00 2.90
2569 7099 0.814010 GGTCATGGGGCATCGTGTAC 60.814 60.000 0.00 0.00 0.00 2.90
2570 7100 0.178068 GTCATGGGGCATCGTGTACT 59.822 55.000 0.00 0.00 0.00 2.73
2571 7101 0.908910 TCATGGGGCATCGTGTACTT 59.091 50.000 0.00 0.00 0.00 2.24
2572 7102 1.134521 TCATGGGGCATCGTGTACTTC 60.135 52.381 0.00 0.00 0.00 3.01
2573 7103 0.908910 ATGGGGCATCGTGTACTTCA 59.091 50.000 0.00 0.00 0.00 3.02
2574 7104 0.908910 TGGGGCATCGTGTACTTCAT 59.091 50.000 0.00 0.00 0.00 2.57
2575 7105 1.299541 GGGGCATCGTGTACTTCATG 58.700 55.000 0.00 0.00 34.61 3.07
2576 7106 1.406887 GGGGCATCGTGTACTTCATGT 60.407 52.381 0.00 0.00 34.87 3.21
2577 7107 1.933853 GGGCATCGTGTACTTCATGTC 59.066 52.381 0.00 0.00 34.87 3.06
2578 7108 1.933853 GGCATCGTGTACTTCATGTCC 59.066 52.381 0.00 0.00 34.87 4.02
2579 7109 2.418746 GGCATCGTGTACTTCATGTCCT 60.419 50.000 0.00 0.00 34.87 3.85
2580 7110 3.262420 GCATCGTGTACTTCATGTCCTT 58.738 45.455 0.00 0.00 34.87 3.36
2581 7111 3.307242 GCATCGTGTACTTCATGTCCTTC 59.693 47.826 0.00 0.00 34.87 3.46
2582 7112 3.587797 TCGTGTACTTCATGTCCTTCC 57.412 47.619 0.00 0.00 34.87 3.46
2583 7113 3.162666 TCGTGTACTTCATGTCCTTCCT 58.837 45.455 0.00 0.00 34.87 3.36
2584 7114 3.576982 TCGTGTACTTCATGTCCTTCCTT 59.423 43.478 0.00 0.00 34.87 3.36
2585 7115 4.768448 TCGTGTACTTCATGTCCTTCCTTA 59.232 41.667 0.00 0.00 34.87 2.69
2586 7116 4.863131 CGTGTACTTCATGTCCTTCCTTAC 59.137 45.833 0.00 0.00 0.00 2.34
2587 7117 5.566032 CGTGTACTTCATGTCCTTCCTTACA 60.566 44.000 0.00 0.00 0.00 2.41
2588 7118 5.638234 GTGTACTTCATGTCCTTCCTTACAC 59.362 44.000 0.00 0.00 0.00 2.90
2589 7119 5.542635 TGTACTTCATGTCCTTCCTTACACT 59.457 40.000 0.00 0.00 0.00 3.55
2590 7120 5.568620 ACTTCATGTCCTTCCTTACACTT 57.431 39.130 0.00 0.00 0.00 3.16
2591 7121 5.308825 ACTTCATGTCCTTCCTTACACTTG 58.691 41.667 0.00 0.00 0.00 3.16
2592 7122 5.071788 ACTTCATGTCCTTCCTTACACTTGA 59.928 40.000 0.00 0.00 0.00 3.02
2593 7123 5.762179 TCATGTCCTTCCTTACACTTGAT 57.238 39.130 0.00 0.00 0.00 2.57
2594 7124 5.491070 TCATGTCCTTCCTTACACTTGATG 58.509 41.667 0.00 0.00 0.00 3.07
2595 7125 4.974645 TGTCCTTCCTTACACTTGATGT 57.025 40.909 0.00 0.00 46.06 3.06
2596 7126 4.894784 TGTCCTTCCTTACACTTGATGTC 58.105 43.478 0.00 0.00 42.09 3.06
2597 7127 4.346709 TGTCCTTCCTTACACTTGATGTCA 59.653 41.667 0.00 0.00 42.09 3.58
2598 7128 4.932200 GTCCTTCCTTACACTTGATGTCAG 59.068 45.833 0.00 0.00 42.09 3.51
2599 7129 4.593206 TCCTTCCTTACACTTGATGTCAGT 59.407 41.667 0.00 0.00 42.09 3.41
2600 7130 5.778241 TCCTTCCTTACACTTGATGTCAGTA 59.222 40.000 0.00 0.00 42.09 2.74
2601 7131 5.869888 CCTTCCTTACACTTGATGTCAGTAC 59.130 44.000 0.00 0.00 42.09 2.73
2602 7132 6.413783 TTCCTTACACTTGATGTCAGTACA 57.586 37.500 0.00 0.00 42.09 2.90
2604 7134 7.004555 TCCTTACACTTGATGTCAGTACATT 57.995 36.000 0.00 0.00 46.49 2.71
2605 7135 8.129496 TCCTTACACTTGATGTCAGTACATTA 57.871 34.615 0.00 0.00 46.49 1.90
2606 7136 8.251026 TCCTTACACTTGATGTCAGTACATTAG 58.749 37.037 0.00 0.00 46.49 1.73
2607 7137 8.035394 CCTTACACTTGATGTCAGTACATTAGT 58.965 37.037 0.00 0.00 46.49 2.24
2610 7140 8.349568 ACACTTGATGTCAGTACATTAGTAGA 57.650 34.615 0.00 0.00 46.49 2.59
2611 7141 8.803235 ACACTTGATGTCAGTACATTAGTAGAA 58.197 33.333 0.00 0.00 46.49 2.10
2612 7142 9.639601 CACTTGATGTCAGTACATTAGTAGAAA 57.360 33.333 0.00 0.00 46.49 2.52
2631 7161 1.419381 AAAAAGCCATTTGTCCCGGT 58.581 45.000 0.00 0.00 0.00 5.28
2632 7162 1.419381 AAAAGCCATTTGTCCCGGTT 58.581 45.000 0.00 0.00 0.00 4.44
2633 7163 0.966179 AAAGCCATTTGTCCCGGTTC 59.034 50.000 0.00 0.00 0.00 3.62
2634 7164 1.241315 AAGCCATTTGTCCCGGTTCG 61.241 55.000 0.00 0.00 0.00 3.95
2635 7165 1.969589 GCCATTTGTCCCGGTTCGT 60.970 57.895 0.00 0.00 0.00 3.85
2636 7166 0.674269 GCCATTTGTCCCGGTTCGTA 60.674 55.000 0.00 0.00 0.00 3.43
2637 7167 1.810959 CCATTTGTCCCGGTTCGTAA 58.189 50.000 0.00 0.00 0.00 3.18
2638 7168 1.735571 CCATTTGTCCCGGTTCGTAAG 59.264 52.381 0.00 0.00 0.00 2.34
2639 7169 1.735571 CATTTGTCCCGGTTCGTAAGG 59.264 52.381 0.00 0.00 38.47 2.69
2640 7170 0.603439 TTTGTCCCGGTTCGTAAGGC 60.603 55.000 0.00 0.00 38.47 4.35
2641 7171 2.125391 GTCCCGGTTCGTAAGGCC 60.125 66.667 0.00 0.00 38.47 5.19
2642 7172 3.393106 TCCCGGTTCGTAAGGCCC 61.393 66.667 0.00 0.00 38.47 5.80
2643 7173 3.708544 CCCGGTTCGTAAGGCCCA 61.709 66.667 0.00 0.00 38.47 5.36
2644 7174 2.587889 CCGGTTCGTAAGGCCCAT 59.412 61.111 0.00 0.00 38.47 4.00
2645 7175 1.078001 CCGGTTCGTAAGGCCCATT 60.078 57.895 0.00 0.00 38.47 3.16
2646 7176 0.678684 CCGGTTCGTAAGGCCCATTT 60.679 55.000 0.00 0.00 38.47 2.32
2647 7177 0.450184 CGGTTCGTAAGGCCCATTTG 59.550 55.000 0.00 0.00 38.47 2.32
2648 7178 1.541379 GGTTCGTAAGGCCCATTTGT 58.459 50.000 0.00 0.00 38.47 2.83
2649 7179 1.471287 GGTTCGTAAGGCCCATTTGTC 59.529 52.381 0.00 0.00 38.47 3.18
2650 7180 1.471287 GTTCGTAAGGCCCATTTGTCC 59.529 52.381 0.00 0.00 38.47 4.02
2651 7181 0.034863 TCGTAAGGCCCATTTGTCCC 60.035 55.000 0.00 0.00 38.47 4.46
2652 7182 1.373590 CGTAAGGCCCATTTGTCCCG 61.374 60.000 0.00 0.00 0.00 5.14
2653 7183 1.035385 GTAAGGCCCATTTGTCCCGG 61.035 60.000 0.00 0.00 0.00 5.73
2654 7184 1.502527 TAAGGCCCATTTGTCCCGGT 61.503 55.000 0.00 0.00 0.00 5.28
2655 7185 2.283604 GGCCCATTTGTCCCGGTT 60.284 61.111 0.00 0.00 0.00 4.44
2656 7186 2.645192 GGCCCATTTGTCCCGGTTG 61.645 63.158 0.00 0.00 0.00 3.77
2657 7187 2.645192 GCCCATTTGTCCCGGTTGG 61.645 63.158 0.00 0.00 0.00 3.77
2676 7206 1.279496 GGTAACCGGGACTAAAGGGT 58.721 55.000 6.32 0.00 0.00 4.34
2677 7207 1.208052 GGTAACCGGGACTAAAGGGTC 59.792 57.143 6.32 0.00 35.66 4.46
2678 7208 1.134995 GTAACCGGGACTAAAGGGTCG 60.135 57.143 6.32 0.00 37.12 4.79
2679 7209 1.547472 AACCGGGACTAAAGGGTCGG 61.547 60.000 6.32 0.00 42.69 4.79
2680 7210 1.986210 CCGGGACTAAAGGGTCGGT 60.986 63.158 0.00 0.00 37.12 4.69
2681 7211 0.684153 CCGGGACTAAAGGGTCGGTA 60.684 60.000 0.00 0.00 37.12 4.02
2682 7212 0.457443 CGGGACTAAAGGGTCGGTAC 59.543 60.000 0.00 0.00 37.12 3.34
2683 7213 1.857965 GGGACTAAAGGGTCGGTACT 58.142 55.000 0.00 0.00 37.12 2.73
2684 7214 2.683742 CGGGACTAAAGGGTCGGTACTA 60.684 54.545 0.00 0.00 37.12 1.82
2685 7215 3.365472 GGGACTAAAGGGTCGGTACTAA 58.635 50.000 0.00 0.00 37.12 2.24
2686 7216 3.769300 GGGACTAAAGGGTCGGTACTAAA 59.231 47.826 0.00 0.00 37.12 1.85
2687 7217 4.222810 GGGACTAAAGGGTCGGTACTAAAA 59.777 45.833 0.00 0.00 37.12 1.52
2688 7218 5.104776 GGGACTAAAGGGTCGGTACTAAAAT 60.105 44.000 0.00 0.00 37.12 1.82
2689 7219 6.045318 GGACTAAAGGGTCGGTACTAAAATC 58.955 44.000 0.00 0.00 37.12 2.17
2690 7220 5.982356 ACTAAAGGGTCGGTACTAAAATCC 58.018 41.667 0.00 0.00 0.00 3.01
2691 7221 5.723405 ACTAAAGGGTCGGTACTAAAATCCT 59.277 40.000 0.00 0.00 0.00 3.24
2692 7222 6.897413 ACTAAAGGGTCGGTACTAAAATCCTA 59.103 38.462 0.00 0.00 0.00 2.94
2693 7223 5.604758 AAGGGTCGGTACTAAAATCCTAC 57.395 43.478 0.00 0.00 0.00 3.18
2694 7224 4.613437 AGGGTCGGTACTAAAATCCTACA 58.387 43.478 0.00 0.00 0.00 2.74
2695 7225 4.403752 AGGGTCGGTACTAAAATCCTACAC 59.596 45.833 0.00 0.00 0.00 2.90
2696 7226 4.442052 GGGTCGGTACTAAAATCCTACACC 60.442 50.000 0.00 0.00 0.00 4.16
2697 7227 4.403752 GGTCGGTACTAAAATCCTACACCT 59.596 45.833 0.00 0.00 0.00 4.00
2698 7228 5.105187 GGTCGGTACTAAAATCCTACACCTT 60.105 44.000 0.00 0.00 0.00 3.50
2699 7229 6.401394 GTCGGTACTAAAATCCTACACCTTT 58.599 40.000 0.00 0.00 0.00 3.11
2700 7230 7.363793 GGTCGGTACTAAAATCCTACACCTTTA 60.364 40.741 0.00 0.00 0.00 1.85
2701 7231 7.704047 GTCGGTACTAAAATCCTACACCTTTAG 59.296 40.741 0.00 0.00 37.38 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.974957 TCGGAGGATTGTTTGTCTCCA 59.025 47.619 8.65 0.00 44.37 3.86
2 3 2.737252 GTGTCGGAGGATTGTTTGTCTC 59.263 50.000 0.00 0.00 0.00 3.36
3 4 2.550208 GGTGTCGGAGGATTGTTTGTCT 60.550 50.000 0.00 0.00 0.00 3.41
4 5 1.804748 GGTGTCGGAGGATTGTTTGTC 59.195 52.381 0.00 0.00 0.00 3.18
5 6 1.142060 TGGTGTCGGAGGATTGTTTGT 59.858 47.619 0.00 0.00 0.00 2.83
6 7 1.890876 TGGTGTCGGAGGATTGTTTG 58.109 50.000 0.00 0.00 0.00 2.93
38 2806 5.781210 TGATGTTGGTCACTATTTGCAAA 57.219 34.783 15.44 15.44 0.00 3.68
39 2807 5.981088 ATGATGTTGGTCACTATTTGCAA 57.019 34.783 0.00 0.00 0.00 4.08
40 2808 5.981088 AATGATGTTGGTCACTATTTGCA 57.019 34.783 0.00 0.00 0.00 4.08
41 2809 8.931385 AAATAATGATGTTGGTCACTATTTGC 57.069 30.769 3.45 0.00 38.40 3.68
66 4263 7.504926 AGGTGATAGTGTTGGGATAAAAGTA 57.495 36.000 0.00 0.00 0.00 2.24
76 4273 6.037786 TCTAGTTGAAGGTGATAGTGTTGG 57.962 41.667 0.00 0.00 0.00 3.77
88 4285 7.662897 ACACTCTAAGAAACTCTAGTTGAAGG 58.337 38.462 0.00 0.00 38.44 3.46
118 4315 1.212935 AGGGACAATCCATGGCTACAC 59.787 52.381 6.96 0.00 38.64 2.90
149 4347 2.039418 GGGCTTCCAGTTCCAACTTTT 58.961 47.619 0.00 0.00 37.08 2.27
157 4364 3.491342 AGAGAAAAAGGGCTTCCAGTTC 58.509 45.455 0.00 0.00 0.00 3.01
160 4367 3.146104 TGAGAGAAAAAGGGCTTCCAG 57.854 47.619 0.00 0.00 0.00 3.86
162 4369 3.491342 ACTTGAGAGAAAAAGGGCTTCC 58.509 45.455 0.00 0.00 0.00 3.46
212 4420 7.931578 TTTTGGCGAAAAATAGAAGATAGGA 57.068 32.000 3.95 0.00 32.72 2.94
235 4443 8.600625 GCGAAAAATAGAAAGTGAAACCTTTTT 58.399 29.630 0.00 0.00 37.80 1.94
236 4444 7.223971 GGCGAAAAATAGAAAGTGAAACCTTTT 59.776 33.333 0.00 0.00 37.80 2.27
237 4445 6.700081 GGCGAAAAATAGAAAGTGAAACCTTT 59.300 34.615 0.00 0.00 37.80 3.11
268 4476 5.638234 ACTAACATGTAGAAAGCGAAACCTC 59.362 40.000 0.00 0.00 0.00 3.85
286 4494 8.712285 TCGAAGAAAGAGAAAGAAAACTAACA 57.288 30.769 0.00 0.00 0.00 2.41
289 4497 6.424207 GCCTCGAAGAAAGAGAAAGAAAACTA 59.576 38.462 0.00 0.00 37.93 2.24
300 4508 3.577649 TGTACTGCCTCGAAGAAAGAG 57.422 47.619 0.00 0.00 34.09 2.85
306 4514 2.479837 TGTGTTTGTACTGCCTCGAAG 58.520 47.619 0.00 0.00 0.00 3.79
309 4517 2.598907 CGTTTGTGTTTGTACTGCCTCG 60.599 50.000 0.00 0.00 0.00 4.63
310 4518 2.853281 GCGTTTGTGTTTGTACTGCCTC 60.853 50.000 0.00 0.00 0.00 4.70
328 4536 7.332678 TGAGTGTATACGTGTATATATGAGCGT 59.667 37.037 0.00 12.45 36.52 5.07
362 4572 3.838244 AGGATGTGCATGTATACGGTT 57.162 42.857 0.00 0.00 0.00 4.44
364 4574 3.258372 AGGTAGGATGTGCATGTATACGG 59.742 47.826 0.00 0.00 0.00 4.02
373 4583 3.199727 TGCTCATAAAGGTAGGATGTGCA 59.800 43.478 6.71 6.71 43.79 4.57
387 4597 4.537135 AGTTTCTCGAAGGTGCTCATAA 57.463 40.909 0.00 0.00 0.00 1.90
405 4615 7.739825 TCTTAAGATGATATGCCAGCTTAGTT 58.260 34.615 0.00 0.00 43.24 2.24
467 4677 4.430908 CGTTTAATAGGAGGAGACGCTTT 58.569 43.478 0.00 0.00 0.00 3.51
470 4680 2.125685 GCGTTTAATAGGAGGAGACGC 58.874 52.381 2.19 2.19 45.65 5.19
485 4695 2.400896 ATTTGCGGTGAAGCGCGTTT 62.401 50.000 20.32 8.29 40.67 3.60
493 4703 7.093727 TGGATTTATTTAAGGATTTGCGGTGAA 60.094 33.333 0.00 0.00 0.00 3.18
579 4792 2.927871 GCGCTGAAATGCTTGGATGTTT 60.928 45.455 0.00 0.00 0.00 2.83
597 4810 3.599792 AAGCACAACATCGCTGCGC 62.600 57.895 18.65 0.00 38.82 6.09
655 4868 1.649664 CCCTGCGAGTCATTCTTCTG 58.350 55.000 0.00 0.00 0.00 3.02
822 5036 0.805322 CTGCTGGAAGAGTAGCTGCG 60.805 60.000 0.00 0.00 40.52 5.18
878 5102 7.459394 TGAAAGTGTACGTATATAGCTTTGC 57.541 36.000 9.95 4.81 0.00 3.68
880 5104 9.649167 AGTTTGAAAGTGTACGTATATAGCTTT 57.351 29.630 0.00 2.38 0.00 3.51
900 5125 6.521162 TGTATGTGCTCTTAACTCAGTTTGA 58.479 36.000 0.00 0.00 0.00 2.69
924 5172 3.131709 ACAGTTTGCTCTGCTGTGTAT 57.868 42.857 0.00 0.00 41.33 2.29
942 5190 4.659480 GGTGCTCGACCGTAAACA 57.341 55.556 0.00 0.00 34.02 2.83
950 5204 1.508632 TTTGCTACTTGGTGCTCGAC 58.491 50.000 0.00 0.00 0.00 4.20
1008 5265 1.627329 AGCAGCTTCACATCTCCTTCA 59.373 47.619 0.00 0.00 0.00 3.02
1116 5376 1.301677 GGAGCTCGCCCTTGTTGAAG 61.302 60.000 7.83 0.00 0.00 3.02
1203 5463 3.583086 TCGACGATGGCGAGCGAT 61.583 61.111 14.70 0.00 40.56 4.58
1309 5569 1.536284 GGGGAACAGCTTATCGTCGAG 60.536 57.143 0.00 0.00 0.00 4.04
1355 5615 1.679305 GCTCTGTCCTCCTCCGTGA 60.679 63.158 0.00 0.00 0.00 4.35
1427 5687 1.993701 TTTCCCACCAGAGCACTGCA 61.994 55.000 5.52 0.00 42.25 4.41
1428 5688 1.228245 TTTCCCACCAGAGCACTGC 60.228 57.895 5.52 0.00 42.25 4.40
1800 6069 6.669125 TGAATGATGTCAAATCCAAAAGGT 57.331 33.333 0.00 0.00 0.00 3.50
1916 6260 4.946784 ATCAAGACTTAAACACGATGGC 57.053 40.909 0.00 0.00 0.00 4.40
1955 6430 9.555727 ACTAAACTTGCACTTTTTAGACATAGA 57.444 29.630 20.18 0.00 36.64 1.98
2099 6602 5.163663 GGGATATGATCGAAGAGACTAGCAG 60.164 48.000 0.00 0.00 43.63 4.24
2334 6838 3.243367 GGTTAGTTGTGCACAGCAAATGA 60.243 43.478 31.45 8.74 41.47 2.57
2335 6839 3.052036 GGTTAGTTGTGCACAGCAAATG 58.948 45.455 31.45 0.00 41.47 2.32
2344 6848 5.233988 GCCATAAATTTGGTTAGTTGTGCA 58.766 37.500 0.00 0.00 39.11 4.57
2348 6852 9.612066 ATTATTGGCCATAAATTTGGTTAGTTG 57.388 29.630 6.09 0.00 39.11 3.16
2382 6912 3.244561 ACTGTCACGATTCTTGGTGGAAT 60.245 43.478 0.00 0.00 38.47 3.01
2385 6915 2.169832 ACTGTCACGATTCTTGGTGG 57.830 50.000 0.00 0.00 32.87 4.61
2386 6916 4.055360 TGTAACTGTCACGATTCTTGGTG 58.945 43.478 0.00 0.00 33.26 4.17
2387 6917 4.330944 TGTAACTGTCACGATTCTTGGT 57.669 40.909 0.00 0.00 0.00 3.67
2388 6918 5.465390 TCTTTGTAACTGTCACGATTCTTGG 59.535 40.000 0.00 0.00 0.00 3.61
2389 6919 6.525121 TCTTTGTAACTGTCACGATTCTTG 57.475 37.500 0.00 0.00 0.00 3.02
2390 6920 6.292919 GCTTCTTTGTAACTGTCACGATTCTT 60.293 38.462 0.00 0.00 0.00 2.52
2391 6921 5.177696 GCTTCTTTGTAACTGTCACGATTCT 59.822 40.000 0.00 0.00 0.00 2.40
2392 6922 5.050363 TGCTTCTTTGTAACTGTCACGATTC 60.050 40.000 0.00 0.00 0.00 2.52
2393 6923 4.814234 TGCTTCTTTGTAACTGTCACGATT 59.186 37.500 0.00 0.00 0.00 3.34
2394 6924 4.377021 TGCTTCTTTGTAACTGTCACGAT 58.623 39.130 0.00 0.00 0.00 3.73
2395 6925 3.787785 TGCTTCTTTGTAACTGTCACGA 58.212 40.909 0.00 0.00 0.00 4.35
2396 6926 4.732285 ATGCTTCTTTGTAACTGTCACG 57.268 40.909 0.00 0.00 0.00 4.35
2397 6927 8.850454 TTAAAATGCTTCTTTGTAACTGTCAC 57.150 30.769 0.00 0.00 0.00 3.67
2398 6928 9.677567 GATTAAAATGCTTCTTTGTAACTGTCA 57.322 29.630 0.00 0.00 0.00 3.58
2399 6929 9.129209 GGATTAAAATGCTTCTTTGTAACTGTC 57.871 33.333 0.00 0.00 0.00 3.51
2400 6930 8.637986 TGGATTAAAATGCTTCTTTGTAACTGT 58.362 29.630 0.00 0.00 0.00 3.55
2401 6931 9.132521 CTGGATTAAAATGCTTCTTTGTAACTG 57.867 33.333 0.00 0.00 0.00 3.16
2402 6932 8.306761 CCTGGATTAAAATGCTTCTTTGTAACT 58.693 33.333 0.00 0.00 0.00 2.24
2403 6933 8.088365 ACCTGGATTAAAATGCTTCTTTGTAAC 58.912 33.333 0.00 0.00 0.00 2.50
2404 6934 8.189119 ACCTGGATTAAAATGCTTCTTTGTAA 57.811 30.769 0.00 0.00 0.00 2.41
2405 6935 7.775053 ACCTGGATTAAAATGCTTCTTTGTA 57.225 32.000 0.00 0.00 0.00 2.41
2406 6936 6.670695 ACCTGGATTAAAATGCTTCTTTGT 57.329 33.333 0.00 0.00 0.00 2.83
2407 6937 7.153985 TGAACCTGGATTAAAATGCTTCTTTG 58.846 34.615 0.00 0.00 0.00 2.77
2408 6938 7.301868 TGAACCTGGATTAAAATGCTTCTTT 57.698 32.000 0.00 0.00 0.00 2.52
2409 6939 6.916360 TGAACCTGGATTAAAATGCTTCTT 57.084 33.333 0.00 0.00 0.00 2.52
2410 6940 6.916360 TTGAACCTGGATTAAAATGCTTCT 57.084 33.333 0.00 0.00 0.00 2.85
2411 6941 8.445493 CAAATTGAACCTGGATTAAAATGCTTC 58.555 33.333 0.00 0.00 0.00 3.86
2412 6942 8.156165 TCAAATTGAACCTGGATTAAAATGCTT 58.844 29.630 0.00 0.00 0.00 3.91
2413 6943 7.678837 TCAAATTGAACCTGGATTAAAATGCT 58.321 30.769 0.00 0.00 0.00 3.79
2414 6944 7.413328 GCTCAAATTGAACCTGGATTAAAATGC 60.413 37.037 0.00 0.00 0.00 3.56
2415 6945 7.603404 TGCTCAAATTGAACCTGGATTAAAATG 59.397 33.333 0.00 0.00 0.00 2.32
2416 6946 7.678837 TGCTCAAATTGAACCTGGATTAAAAT 58.321 30.769 0.00 0.00 0.00 1.82
2417 6947 7.060383 TGCTCAAATTGAACCTGGATTAAAA 57.940 32.000 0.00 0.00 0.00 1.52
2418 6948 6.662865 TGCTCAAATTGAACCTGGATTAAA 57.337 33.333 0.00 0.00 0.00 1.52
2419 6949 6.855763 ATGCTCAAATTGAACCTGGATTAA 57.144 33.333 0.00 0.00 0.00 1.40
2420 6950 6.664816 AGAATGCTCAAATTGAACCTGGATTA 59.335 34.615 0.00 0.00 0.00 1.75
2421 6951 5.482878 AGAATGCTCAAATTGAACCTGGATT 59.517 36.000 0.00 0.00 0.00 3.01
2422 6952 5.021458 AGAATGCTCAAATTGAACCTGGAT 58.979 37.500 0.00 0.00 0.00 3.41
2423 6953 4.410099 AGAATGCTCAAATTGAACCTGGA 58.590 39.130 0.00 0.00 0.00 3.86
2424 6954 4.381292 GGAGAATGCTCAAATTGAACCTGG 60.381 45.833 2.29 0.00 43.14 4.45
2425 6955 4.381292 GGGAGAATGCTCAAATTGAACCTG 60.381 45.833 2.29 0.00 43.14 4.00
2426 6956 3.766051 GGGAGAATGCTCAAATTGAACCT 59.234 43.478 2.29 0.00 43.14 3.50
2427 6957 3.766051 AGGGAGAATGCTCAAATTGAACC 59.234 43.478 2.29 0.00 43.14 3.62
2428 6958 4.142293 GGAGGGAGAATGCTCAAATTGAAC 60.142 45.833 2.29 0.00 43.14 3.18
2429 6959 4.019174 GGAGGGAGAATGCTCAAATTGAA 58.981 43.478 2.29 0.00 43.14 2.69
2430 6960 3.267812 AGGAGGGAGAATGCTCAAATTGA 59.732 43.478 2.29 0.00 43.14 2.57
2431 6961 3.629087 AGGAGGGAGAATGCTCAAATTG 58.371 45.455 2.29 0.00 43.14 2.32
2432 6962 4.021916 CAAGGAGGGAGAATGCTCAAATT 58.978 43.478 2.29 0.00 43.14 1.82
2433 6963 3.011032 ACAAGGAGGGAGAATGCTCAAAT 59.989 43.478 2.29 0.00 43.14 2.32
2434 6964 2.376518 ACAAGGAGGGAGAATGCTCAAA 59.623 45.455 2.29 0.00 43.14 2.69
2435 6965 1.988107 ACAAGGAGGGAGAATGCTCAA 59.012 47.619 2.29 0.00 43.14 3.02
2436 6966 1.661463 ACAAGGAGGGAGAATGCTCA 58.339 50.000 2.29 0.00 43.14 4.26
2437 6967 2.797177 AACAAGGAGGGAGAATGCTC 57.203 50.000 0.00 0.00 40.54 4.26
2438 6968 3.589288 AGTTAACAAGGAGGGAGAATGCT 59.411 43.478 8.61 0.00 0.00 3.79
2439 6969 3.956744 AGTTAACAAGGAGGGAGAATGC 58.043 45.455 8.61 0.00 0.00 3.56
2440 6970 5.560724 TGAAGTTAACAAGGAGGGAGAATG 58.439 41.667 8.61 0.00 0.00 2.67
2441 6971 5.804771 GCTGAAGTTAACAAGGAGGGAGAAT 60.805 44.000 8.61 0.00 0.00 2.40
2442 6972 4.505039 GCTGAAGTTAACAAGGAGGGAGAA 60.505 45.833 8.61 0.00 0.00 2.87
2443 6973 3.008049 GCTGAAGTTAACAAGGAGGGAGA 59.992 47.826 8.61 0.00 0.00 3.71
2444 6974 3.008485 AGCTGAAGTTAACAAGGAGGGAG 59.992 47.826 8.61 0.00 0.00 4.30
2445 6975 2.979678 AGCTGAAGTTAACAAGGAGGGA 59.020 45.455 8.61 0.00 0.00 4.20
2446 6976 3.425162 AGCTGAAGTTAACAAGGAGGG 57.575 47.619 8.61 0.00 0.00 4.30
2447 6977 4.821805 TCAAAGCTGAAGTTAACAAGGAGG 59.178 41.667 8.61 0.00 0.00 4.30
2448 6978 5.296780 TGTCAAAGCTGAAGTTAACAAGGAG 59.703 40.000 8.61 0.00 31.88 3.69
2449 6979 5.065988 GTGTCAAAGCTGAAGTTAACAAGGA 59.934 40.000 8.61 0.00 31.88 3.36
2450 6980 5.273944 GTGTCAAAGCTGAAGTTAACAAGG 58.726 41.667 8.61 0.00 31.88 3.61
2451 6981 5.163663 TGGTGTCAAAGCTGAAGTTAACAAG 60.164 40.000 8.61 3.65 31.88 3.16
2452 6982 4.702612 TGGTGTCAAAGCTGAAGTTAACAA 59.297 37.500 8.61 0.00 31.88 2.83
2453 6983 4.265893 TGGTGTCAAAGCTGAAGTTAACA 58.734 39.130 8.61 0.00 31.88 2.41
2454 6984 4.893424 TGGTGTCAAAGCTGAAGTTAAC 57.107 40.909 0.00 0.00 31.88 2.01
2455 6985 4.947388 ACTTGGTGTCAAAGCTGAAGTTAA 59.053 37.500 0.00 0.00 31.88 2.01
2456 6986 4.523083 ACTTGGTGTCAAAGCTGAAGTTA 58.477 39.130 0.00 0.00 31.88 2.24
2457 6987 3.356290 ACTTGGTGTCAAAGCTGAAGTT 58.644 40.909 0.00 0.00 31.88 2.66
2458 6988 2.945668 GACTTGGTGTCAAAGCTGAAGT 59.054 45.455 0.00 0.00 44.73 3.01
2459 6989 3.615849 GACTTGGTGTCAAAGCTGAAG 57.384 47.619 0.00 0.00 44.73 3.02
2468 6998 8.890893 AGAGTTATCTTGGATGACTTGGTGTCA 61.891 40.741 6.45 0.86 45.98 3.58
2469 6999 5.491982 AGTTATCTTGGATGACTTGGTGTC 58.508 41.667 0.15 0.00 45.54 3.67
2470 7000 5.249393 AGAGTTATCTTGGATGACTTGGTGT 59.751 40.000 6.45 0.00 28.57 4.16
2471 7001 5.583854 CAGAGTTATCTTGGATGACTTGGTG 59.416 44.000 6.45 2.85 31.64 4.17
2472 7002 5.485353 TCAGAGTTATCTTGGATGACTTGGT 59.515 40.000 6.45 0.00 31.64 3.67
2473 7003 5.982356 TCAGAGTTATCTTGGATGACTTGG 58.018 41.667 6.45 3.47 31.64 3.61
2474 7004 7.102346 AGTTCAGAGTTATCTTGGATGACTTG 58.898 38.462 6.45 7.09 31.64 3.16
2475 7005 7.251321 AGTTCAGAGTTATCTTGGATGACTT 57.749 36.000 6.45 0.00 31.64 3.01
2476 7006 6.865834 AGTTCAGAGTTATCTTGGATGACT 57.134 37.500 4.95 4.95 31.64 3.41
2477 7007 8.874816 GTTTAGTTCAGAGTTATCTTGGATGAC 58.125 37.037 0.00 0.00 31.64 3.06
2478 7008 8.816894 AGTTTAGTTCAGAGTTATCTTGGATGA 58.183 33.333 0.00 0.00 31.64 2.92
2479 7009 8.877779 CAGTTTAGTTCAGAGTTATCTTGGATG 58.122 37.037 0.00 0.00 31.64 3.51
2480 7010 8.816894 TCAGTTTAGTTCAGAGTTATCTTGGAT 58.183 33.333 0.00 0.00 31.64 3.41
2481 7011 8.190326 TCAGTTTAGTTCAGAGTTATCTTGGA 57.810 34.615 0.00 0.00 31.64 3.53
2482 7012 8.877779 CATCAGTTTAGTTCAGAGTTATCTTGG 58.122 37.037 0.00 0.00 31.64 3.61
2483 7013 9.645059 TCATCAGTTTAGTTCAGAGTTATCTTG 57.355 33.333 0.00 0.00 31.64 3.02
2485 7015 9.646427 GTTCATCAGTTTAGTTCAGAGTTATCT 57.354 33.333 0.00 0.00 35.63 1.98
2486 7016 9.424319 TGTTCATCAGTTTAGTTCAGAGTTATC 57.576 33.333 0.00 0.00 0.00 1.75
2487 7017 9.778741 TTGTTCATCAGTTTAGTTCAGAGTTAT 57.221 29.630 0.00 0.00 0.00 1.89
2488 7018 9.778741 ATTGTTCATCAGTTTAGTTCAGAGTTA 57.221 29.630 0.00 0.00 0.00 2.24
2489 7019 8.682936 ATTGTTCATCAGTTTAGTTCAGAGTT 57.317 30.769 0.00 0.00 0.00 3.01
2490 7020 8.153550 AGATTGTTCATCAGTTTAGTTCAGAGT 58.846 33.333 0.00 0.00 33.75 3.24
2491 7021 8.545229 AGATTGTTCATCAGTTTAGTTCAGAG 57.455 34.615 0.00 0.00 33.75 3.35
2492 7022 8.150296 TGAGATTGTTCATCAGTTTAGTTCAGA 58.850 33.333 0.00 0.00 33.75 3.27
2493 7023 8.315391 TGAGATTGTTCATCAGTTTAGTTCAG 57.685 34.615 0.00 0.00 33.75 3.02
2494 7024 8.853077 ATGAGATTGTTCATCAGTTTAGTTCA 57.147 30.769 0.00 0.00 32.42 3.18
2500 7030 9.082313 ACCTAAAATGAGATTGTTCATCAGTTT 57.918 29.630 5.38 5.38 42.08 2.66
2501 7031 8.517878 CACCTAAAATGAGATTGTTCATCAGTT 58.482 33.333 0.00 0.00 36.81 3.16
2502 7032 7.362401 GCACCTAAAATGAGATTGTTCATCAGT 60.362 37.037 0.00 0.00 36.81 3.41
2503 7033 6.971184 GCACCTAAAATGAGATTGTTCATCAG 59.029 38.462 0.00 0.00 36.81 2.90
2504 7034 6.433716 TGCACCTAAAATGAGATTGTTCATCA 59.566 34.615 0.00 0.00 36.81 3.07
2505 7035 6.855836 TGCACCTAAAATGAGATTGTTCATC 58.144 36.000 0.00 0.00 36.81 2.92
2506 7036 6.839124 TGCACCTAAAATGAGATTGTTCAT 57.161 33.333 0.00 0.00 39.42 2.57
2507 7037 6.433716 TGATGCACCTAAAATGAGATTGTTCA 59.566 34.615 0.00 0.00 0.00 3.18
2508 7038 6.855836 TGATGCACCTAAAATGAGATTGTTC 58.144 36.000 0.00 0.00 0.00 3.18
2509 7039 6.660521 TCTGATGCACCTAAAATGAGATTGTT 59.339 34.615 0.00 0.00 0.00 2.83
2510 7040 6.182627 TCTGATGCACCTAAAATGAGATTGT 58.817 36.000 0.00 0.00 0.00 2.71
2511 7041 6.688637 TCTGATGCACCTAAAATGAGATTG 57.311 37.500 0.00 0.00 0.00 2.67
2512 7042 7.893124 AATCTGATGCACCTAAAATGAGATT 57.107 32.000 0.00 0.00 31.87 2.40
2513 7043 7.893124 AAATCTGATGCACCTAAAATGAGAT 57.107 32.000 0.00 0.00 0.00 2.75
2514 7044 7.012704 GCTAAATCTGATGCACCTAAAATGAGA 59.987 37.037 0.00 0.00 0.00 3.27
2515 7045 7.013083 AGCTAAATCTGATGCACCTAAAATGAG 59.987 37.037 0.00 0.00 0.00 2.90
2516 7046 6.830324 AGCTAAATCTGATGCACCTAAAATGA 59.170 34.615 0.00 0.00 0.00 2.57
2517 7047 6.916387 CAGCTAAATCTGATGCACCTAAAATG 59.084 38.462 0.00 0.00 36.19 2.32
2518 7048 6.040166 CCAGCTAAATCTGATGCACCTAAAAT 59.960 38.462 0.00 0.00 36.19 1.82
2519 7049 5.357878 CCAGCTAAATCTGATGCACCTAAAA 59.642 40.000 0.00 0.00 36.19 1.52
2520 7050 4.883585 CCAGCTAAATCTGATGCACCTAAA 59.116 41.667 0.00 0.00 36.19 1.85
2521 7051 4.454678 CCAGCTAAATCTGATGCACCTAA 58.545 43.478 0.00 0.00 36.19 2.69
2522 7052 3.745480 GCCAGCTAAATCTGATGCACCTA 60.745 47.826 0.00 0.00 36.19 3.08
2523 7053 2.928334 CCAGCTAAATCTGATGCACCT 58.072 47.619 0.00 0.00 36.19 4.00
2524 7054 1.336125 GCCAGCTAAATCTGATGCACC 59.664 52.381 0.00 0.00 36.19 5.01
2525 7055 2.019249 TGCCAGCTAAATCTGATGCAC 58.981 47.619 0.00 0.00 36.19 4.57
2526 7056 2.092807 TCTGCCAGCTAAATCTGATGCA 60.093 45.455 0.00 0.00 36.19 3.96
2527 7057 2.569059 TCTGCCAGCTAAATCTGATGC 58.431 47.619 0.00 0.00 36.19 3.91
2528 7058 4.023107 CCAATCTGCCAGCTAAATCTGATG 60.023 45.833 0.00 0.00 36.19 3.07
2529 7059 4.142790 CCAATCTGCCAGCTAAATCTGAT 58.857 43.478 0.00 0.00 36.19 2.90
2530 7060 3.054139 ACCAATCTGCCAGCTAAATCTGA 60.054 43.478 0.00 0.00 36.19 3.27
2531 7061 3.285484 ACCAATCTGCCAGCTAAATCTG 58.715 45.455 0.00 0.00 0.00 2.90
2532 7062 3.054139 TGACCAATCTGCCAGCTAAATCT 60.054 43.478 0.00 0.00 0.00 2.40
2533 7063 3.282021 TGACCAATCTGCCAGCTAAATC 58.718 45.455 0.00 0.00 0.00 2.17
2534 7064 3.370840 TGACCAATCTGCCAGCTAAAT 57.629 42.857 0.00 0.00 0.00 1.40
2535 7065 2.877097 TGACCAATCTGCCAGCTAAA 57.123 45.000 0.00 0.00 0.00 1.85
2536 7066 2.646930 CATGACCAATCTGCCAGCTAA 58.353 47.619 0.00 0.00 0.00 3.09
2537 7067 1.134007 CCATGACCAATCTGCCAGCTA 60.134 52.381 0.00 0.00 0.00 3.32
2538 7068 0.395311 CCATGACCAATCTGCCAGCT 60.395 55.000 0.00 0.00 0.00 4.24
2539 7069 1.389609 CCCATGACCAATCTGCCAGC 61.390 60.000 0.00 0.00 0.00 4.85
2540 7070 0.754217 CCCCATGACCAATCTGCCAG 60.754 60.000 0.00 0.00 0.00 4.85
2541 7071 1.307309 CCCCATGACCAATCTGCCA 59.693 57.895 0.00 0.00 0.00 4.92
2542 7072 2.129785 GCCCCATGACCAATCTGCC 61.130 63.158 0.00 0.00 0.00 4.85
2543 7073 0.757935 ATGCCCCATGACCAATCTGC 60.758 55.000 0.00 0.00 0.00 4.26
2544 7074 1.325355 GATGCCCCATGACCAATCTG 58.675 55.000 0.00 0.00 0.00 2.90
2545 7075 0.179009 CGATGCCCCATGACCAATCT 60.179 55.000 0.00 0.00 0.00 2.40
2546 7076 0.466189 ACGATGCCCCATGACCAATC 60.466 55.000 0.00 0.00 0.00 2.67
2547 7077 0.752743 CACGATGCCCCATGACCAAT 60.753 55.000 0.00 0.00 0.00 3.16
2548 7078 1.378382 CACGATGCCCCATGACCAA 60.378 57.895 0.00 0.00 0.00 3.67
2549 7079 1.268283 TACACGATGCCCCATGACCA 61.268 55.000 0.00 0.00 0.00 4.02
2550 7080 0.814010 GTACACGATGCCCCATGACC 60.814 60.000 0.00 0.00 0.00 4.02
2551 7081 0.178068 AGTACACGATGCCCCATGAC 59.822 55.000 0.00 0.00 0.00 3.06
2552 7082 0.908910 AAGTACACGATGCCCCATGA 59.091 50.000 0.00 0.00 0.00 3.07
2553 7083 1.299541 GAAGTACACGATGCCCCATG 58.700 55.000 0.00 0.00 0.00 3.66
2554 7084 0.908910 TGAAGTACACGATGCCCCAT 59.091 50.000 0.00 0.00 0.00 4.00
2555 7085 0.908910 ATGAAGTACACGATGCCCCA 59.091 50.000 0.00 0.00 0.00 4.96
2556 7086 1.299541 CATGAAGTACACGATGCCCC 58.700 55.000 0.00 0.00 0.00 5.80
2557 7087 1.933853 GACATGAAGTACACGATGCCC 59.066 52.381 0.00 0.00 0.00 5.36
2558 7088 1.933853 GGACATGAAGTACACGATGCC 59.066 52.381 0.00 0.00 0.00 4.40
2559 7089 2.893637 AGGACATGAAGTACACGATGC 58.106 47.619 0.00 0.00 31.45 3.91
2560 7090 3.865745 GGAAGGACATGAAGTACACGATG 59.134 47.826 0.00 0.00 31.45 3.84
2561 7091 3.769844 AGGAAGGACATGAAGTACACGAT 59.230 43.478 0.00 0.00 31.45 3.73
2562 7092 3.162666 AGGAAGGACATGAAGTACACGA 58.837 45.455 0.00 0.00 31.45 4.35
2563 7093 3.594603 AGGAAGGACATGAAGTACACG 57.405 47.619 0.00 0.00 31.45 4.49
2564 7094 5.638234 GTGTAAGGAAGGACATGAAGTACAC 59.362 44.000 0.00 3.09 34.08 2.90
2565 7095 5.542635 AGTGTAAGGAAGGACATGAAGTACA 59.457 40.000 0.00 0.00 31.45 2.90
2566 7096 6.038997 AGTGTAAGGAAGGACATGAAGTAC 57.961 41.667 0.00 0.00 0.00 2.73
2567 7097 6.269077 TCAAGTGTAAGGAAGGACATGAAGTA 59.731 38.462 0.00 0.00 0.00 2.24
2568 7098 5.071788 TCAAGTGTAAGGAAGGACATGAAGT 59.928 40.000 0.00 0.00 0.00 3.01
2569 7099 5.551233 TCAAGTGTAAGGAAGGACATGAAG 58.449 41.667 0.00 0.00 0.00 3.02
2570 7100 5.560722 TCAAGTGTAAGGAAGGACATGAA 57.439 39.130 0.00 0.00 0.00 2.57
2571 7101 5.013079 ACATCAAGTGTAAGGAAGGACATGA 59.987 40.000 0.00 0.00 39.91 3.07
2572 7102 5.248640 ACATCAAGTGTAAGGAAGGACATG 58.751 41.667 0.00 0.00 39.91 3.21
2573 7103 5.013079 TGACATCAAGTGTAAGGAAGGACAT 59.987 40.000 0.00 0.00 42.36 3.06
2574 7104 4.346709 TGACATCAAGTGTAAGGAAGGACA 59.653 41.667 0.00 0.00 42.36 4.02
2575 7105 4.894784 TGACATCAAGTGTAAGGAAGGAC 58.105 43.478 0.00 0.00 42.36 3.85
2576 7106 4.593206 ACTGACATCAAGTGTAAGGAAGGA 59.407 41.667 0.00 0.00 42.80 3.36
2577 7107 4.899502 ACTGACATCAAGTGTAAGGAAGG 58.100 43.478 0.00 0.00 42.80 3.46
2578 7108 6.455647 TGTACTGACATCAAGTGTAAGGAAG 58.544 40.000 0.00 0.00 42.80 3.46
2579 7109 6.413783 TGTACTGACATCAAGTGTAAGGAA 57.586 37.500 0.00 0.00 42.80 3.36
2580 7110 6.605471 ATGTACTGACATCAAGTGTAAGGA 57.395 37.500 0.00 0.00 43.01 3.36
2581 7111 8.035394 ACTAATGTACTGACATCAAGTGTAAGG 58.965 37.037 0.00 0.00 45.93 2.69
2582 7112 8.988064 ACTAATGTACTGACATCAAGTGTAAG 57.012 34.615 0.00 0.00 45.93 2.34
2584 7114 9.457436 TCTACTAATGTACTGACATCAAGTGTA 57.543 33.333 12.69 3.98 45.93 2.90
2585 7115 8.349568 TCTACTAATGTACTGACATCAAGTGT 57.650 34.615 12.69 0.00 45.93 3.55
2586 7116 9.639601 TTTCTACTAATGTACTGACATCAAGTG 57.360 33.333 12.69 6.52 45.93 3.16
2612 7142 1.419381 ACCGGGACAAATGGCTTTTT 58.581 45.000 6.32 0.00 0.00 1.94
2613 7143 1.343142 GAACCGGGACAAATGGCTTTT 59.657 47.619 6.32 0.00 0.00 2.27
2614 7144 0.966179 GAACCGGGACAAATGGCTTT 59.034 50.000 6.32 0.00 0.00 3.51
2615 7145 1.241315 CGAACCGGGACAAATGGCTT 61.241 55.000 6.32 0.00 0.00 4.35
2616 7146 1.674322 CGAACCGGGACAAATGGCT 60.674 57.895 6.32 0.00 0.00 4.75
2617 7147 0.674269 TACGAACCGGGACAAATGGC 60.674 55.000 6.32 0.00 0.00 4.40
2618 7148 1.735571 CTTACGAACCGGGACAAATGG 59.264 52.381 6.32 0.00 0.00 3.16
2619 7149 1.735571 CCTTACGAACCGGGACAAATG 59.264 52.381 6.32 0.00 0.00 2.32
2620 7150 1.947212 GCCTTACGAACCGGGACAAAT 60.947 52.381 6.32 0.00 0.00 2.32
2621 7151 0.603439 GCCTTACGAACCGGGACAAA 60.603 55.000 6.32 0.00 0.00 2.83
2622 7152 1.004679 GCCTTACGAACCGGGACAA 60.005 57.895 6.32 0.00 0.00 3.18
2623 7153 2.658422 GCCTTACGAACCGGGACA 59.342 61.111 6.32 0.00 0.00 4.02
2624 7154 2.125391 GGCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 0.00 4.46
2625 7155 3.393106 GGGCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 0.00 5.14
2626 7156 2.546114 AATGGGCCTTACGAACCGGG 62.546 60.000 6.32 0.00 0.00 5.73
2627 7157 0.678684 AAATGGGCCTTACGAACCGG 60.679 55.000 4.53 0.00 0.00 5.28
2628 7158 0.450184 CAAATGGGCCTTACGAACCG 59.550 55.000 4.53 0.00 0.00 4.44
2629 7159 1.471287 GACAAATGGGCCTTACGAACC 59.529 52.381 4.53 0.00 0.00 3.62
2630 7160 1.471287 GGACAAATGGGCCTTACGAAC 59.529 52.381 4.53 0.00 0.00 3.95
2631 7161 1.614850 GGGACAAATGGGCCTTACGAA 60.615 52.381 4.53 0.00 0.00 3.85
2632 7162 0.034863 GGGACAAATGGGCCTTACGA 60.035 55.000 4.53 0.00 0.00 3.43
2633 7163 1.373590 CGGGACAAATGGGCCTTACG 61.374 60.000 4.53 0.00 0.00 3.18
2634 7164 1.035385 CCGGGACAAATGGGCCTTAC 61.035 60.000 4.53 0.00 0.00 2.34
2635 7165 1.304952 CCGGGACAAATGGGCCTTA 59.695 57.895 4.53 0.00 0.00 2.69
2636 7166 2.037208 CCGGGACAAATGGGCCTT 59.963 61.111 4.53 0.00 0.00 4.35
2637 7167 2.852281 AACCGGGACAAATGGGCCT 61.852 57.895 6.32 0.00 0.00 5.19
2638 7168 2.283604 AACCGGGACAAATGGGCC 60.284 61.111 6.32 0.00 0.00 5.80
2639 7169 2.645192 CCAACCGGGACAAATGGGC 61.645 63.158 6.32 0.00 40.01 5.36
2640 7170 3.693411 CCAACCGGGACAAATGGG 58.307 61.111 6.32 0.00 40.01 4.00
2653 7183 2.616256 CCTTTAGTCCCGGTTACCCAAC 60.616 54.545 0.00 0.00 0.00 3.77
2654 7184 1.629861 CCTTTAGTCCCGGTTACCCAA 59.370 52.381 0.00 0.00 0.00 4.12
2655 7185 1.278537 CCTTTAGTCCCGGTTACCCA 58.721 55.000 0.00 0.00 0.00 4.51
2656 7186 0.543277 CCCTTTAGTCCCGGTTACCC 59.457 60.000 0.00 0.00 0.00 3.69
2657 7187 1.208052 GACCCTTTAGTCCCGGTTACC 59.792 57.143 0.00 0.00 0.00 2.85
2658 7188 1.134995 CGACCCTTTAGTCCCGGTTAC 60.135 57.143 0.00 0.00 32.91 2.50
2659 7189 1.185315 CGACCCTTTAGTCCCGGTTA 58.815 55.000 0.00 0.00 32.91 2.85
2660 7190 1.547472 CCGACCCTTTAGTCCCGGTT 61.547 60.000 0.00 0.00 32.91 4.44
2661 7191 1.986210 CCGACCCTTTAGTCCCGGT 60.986 63.158 0.00 0.00 32.91 5.28
2662 7192 0.684153 TACCGACCCTTTAGTCCCGG 60.684 60.000 0.00 0.00 42.30 5.73
2663 7193 0.457443 GTACCGACCCTTTAGTCCCG 59.543 60.000 0.00 0.00 32.91 5.14
2664 7194 1.857965 AGTACCGACCCTTTAGTCCC 58.142 55.000 0.00 0.00 32.91 4.46
2665 7195 5.405935 TTTTAGTACCGACCCTTTAGTCC 57.594 43.478 0.00 0.00 32.91 3.85
2666 7196 6.045318 GGATTTTAGTACCGACCCTTTAGTC 58.955 44.000 0.00 0.00 0.00 2.59
2667 7197 5.723405 AGGATTTTAGTACCGACCCTTTAGT 59.277 40.000 0.00 0.00 0.00 2.24
2668 7198 6.231258 AGGATTTTAGTACCGACCCTTTAG 57.769 41.667 0.00 0.00 0.00 1.85
2669 7199 6.667414 TGTAGGATTTTAGTACCGACCCTTTA 59.333 38.462 0.00 0.00 0.00 1.85
2670 7200 5.484998 TGTAGGATTTTAGTACCGACCCTTT 59.515 40.000 0.00 0.00 0.00 3.11
2671 7201 5.025453 TGTAGGATTTTAGTACCGACCCTT 58.975 41.667 0.00 0.00 0.00 3.95
2672 7202 4.403752 GTGTAGGATTTTAGTACCGACCCT 59.596 45.833 0.00 0.00 0.00 4.34
2673 7203 4.442052 GGTGTAGGATTTTAGTACCGACCC 60.442 50.000 0.00 0.00 0.00 4.46
2674 7204 4.403752 AGGTGTAGGATTTTAGTACCGACC 59.596 45.833 0.00 0.00 0.00 4.79
2675 7205 5.588958 AGGTGTAGGATTTTAGTACCGAC 57.411 43.478 0.00 0.00 0.00 4.79
2676 7206 6.610075 AAAGGTGTAGGATTTTAGTACCGA 57.390 37.500 0.00 0.00 0.00 4.69
2677 7207 7.998753 CTAAAGGTGTAGGATTTTAGTACCG 57.001 40.000 0.00 0.00 31.63 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.