Multiple sequence alignment - TraesCS3A01G436700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G436700 chr3A 100.000 3264 0 0 1 3264 680741420 680744683 0.000000e+00 6028.0
1 TraesCS3A01G436700 chr3D 92.106 2293 139 21 1 2258 543807772 543810057 0.000000e+00 3193.0
2 TraesCS3A01G436700 chr3B 91.476 2311 146 25 2 2281 719431192 719433482 0.000000e+00 3129.0
3 TraesCS3A01G436700 chr4D 87.015 593 62 8 2427 3006 6697050 6696460 0.000000e+00 654.0
4 TraesCS3A01G436700 chr4D 85.977 599 55 15 2421 3006 18771874 18772456 5.990000e-172 614.0
5 TraesCS3A01G436700 chr4D 85.356 519 60 9 2513 3017 1615951 1615435 1.040000e-144 523.0
6 TraesCS3A01G436700 chr1A 86.777 605 58 14 2427 3010 575204592 575203989 0.000000e+00 654.0
7 TraesCS3A01G436700 chr1A 85.797 521 59 8 2511 3017 12223771 12223252 3.710000e-149 538.0
8 TraesCS3A01G436700 chr5D 87.205 508 52 7 2511 3006 450524225 450524731 1.700000e-157 566.0
9 TraesCS3A01G436700 chr5D 79.070 172 33 2 1684 1855 488888465 488888297 7.400000e-22 115.0
10 TraesCS3A01G436700 chr5D 91.803 61 3 2 3040 3100 197421532 197421590 2.090000e-12 84.2
11 TraesCS3A01G436700 chr7D 86.759 506 53 7 2511 3004 634755688 634756191 4.760000e-153 551.0
12 TraesCS3A01G436700 chr6D 85.988 521 58 8 2511 3017 471619576 471619057 7.960000e-151 544.0
13 TraesCS3A01G436700 chr4A 85.797 521 58 10 2511 3017 521871966 521871448 3.710000e-149 538.0
14 TraesCS3A01G436700 chr2D 73.506 502 90 23 1686 2177 67576697 67577165 2.030000e-32 150.0
15 TraesCS3A01G436700 chr5A 80.233 172 31 2 1684 1855 609882189 609882021 3.420000e-25 126.0
16 TraesCS3A01G436700 chr5A 90.164 61 4 2 3040 3100 224692294 224692352 9.710000e-11 78.7
17 TraesCS3A01G436700 chr2A 77.876 226 31 15 1685 1901 66785776 66785561 4.420000e-24 122.0
18 TraesCS3A01G436700 chr5B 90.323 62 3 3 3040 3100 212789707 212789648 9.710000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G436700 chr3A 680741420 680744683 3263 False 6028 6028 100.000 1 3264 1 chr3A.!!$F1 3263
1 TraesCS3A01G436700 chr3D 543807772 543810057 2285 False 3193 3193 92.106 1 2258 1 chr3D.!!$F1 2257
2 TraesCS3A01G436700 chr3B 719431192 719433482 2290 False 3129 3129 91.476 2 2281 1 chr3B.!!$F1 2279
3 TraesCS3A01G436700 chr4D 6696460 6697050 590 True 654 654 87.015 2427 3006 1 chr4D.!!$R2 579
4 TraesCS3A01G436700 chr4D 18771874 18772456 582 False 614 614 85.977 2421 3006 1 chr4D.!!$F1 585
5 TraesCS3A01G436700 chr4D 1615435 1615951 516 True 523 523 85.356 2513 3017 1 chr4D.!!$R1 504
6 TraesCS3A01G436700 chr1A 575203989 575204592 603 True 654 654 86.777 2427 3010 1 chr1A.!!$R2 583
7 TraesCS3A01G436700 chr1A 12223252 12223771 519 True 538 538 85.797 2511 3017 1 chr1A.!!$R1 506
8 TraesCS3A01G436700 chr5D 450524225 450524731 506 False 566 566 87.205 2511 3006 1 chr5D.!!$F2 495
9 TraesCS3A01G436700 chr7D 634755688 634756191 503 False 551 551 86.759 2511 3004 1 chr7D.!!$F1 493
10 TraesCS3A01G436700 chr6D 471619057 471619576 519 True 544 544 85.988 2511 3017 1 chr6D.!!$R1 506
11 TraesCS3A01G436700 chr4A 521871448 521871966 518 True 538 538 85.797 2511 3017 1 chr4A.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 283 0.099259 TGGTAGCATTCGTCGTACCG 59.901 55.0 0.00 0.0 38.23 4.02 F
849 874 0.674581 TTCATGCTTGGTGCTCCTCG 60.675 55.0 6.34 0.0 43.37 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1343 0.178068 CTATCCACCCGGTCTGGTTG 59.822 60.0 13.75 0.0 36.12 3.77 R
2319 2371 0.033504 GACGAGCAAGGTGGTCTGAA 59.966 55.0 7.09 0.0 42.30 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 240 4.592192 CGCCGATCGCCACCTGAT 62.592 66.667 10.32 0.00 0.00 2.90
264 268 1.514657 GCGCGTACACGTCATGGTA 60.515 57.895 8.43 0.00 42.22 3.25
265 269 1.469126 GCGCGTACACGTCATGGTAG 61.469 60.000 8.43 0.00 42.22 3.18
276 280 2.540157 CGTCATGGTAGCATTCGTCGTA 60.540 50.000 4.25 0.00 0.00 3.43
277 281 2.787680 GTCATGGTAGCATTCGTCGTAC 59.212 50.000 4.25 0.00 0.00 3.67
278 282 2.124903 CATGGTAGCATTCGTCGTACC 58.875 52.381 4.25 2.80 36.27 3.34
279 283 0.099259 TGGTAGCATTCGTCGTACCG 59.901 55.000 0.00 0.00 38.23 4.02
291 307 1.142965 CGTACCGTGATGATGGGCA 59.857 57.895 0.00 0.00 31.60 5.36
312 328 3.124921 GTCGTGGTCCGGGCAATG 61.125 66.667 9.07 0.72 37.11 2.82
329 345 2.586258 ATGATCGAAGGTTGGAGACG 57.414 50.000 0.00 0.00 0.00 4.18
394 413 3.203412 CGGCCGTAGACGAGAGCT 61.203 66.667 19.50 0.00 43.02 4.09
442 461 1.585521 CCCGAGCGACATGACGTAC 60.586 63.158 18.25 11.51 35.59 3.67
752 777 1.449778 GCCGGGTAGAACAAGCCTC 60.450 63.158 2.18 0.00 34.76 4.70
753 778 1.980052 CCGGGTAGAACAAGCCTCA 59.020 57.895 0.00 0.00 34.76 3.86
769 794 2.961721 CACGGATCGATGCGGTGG 60.962 66.667 36.67 23.99 46.28 4.61
822 847 1.523515 CTCGACGAGTAGATCCACGAG 59.476 57.143 16.83 0.00 40.75 4.18
829 854 2.831366 TAGATCCACGAGTCGGCGC 61.831 63.158 18.30 0.00 33.86 6.53
842 867 2.180017 GGCGCTTCATGCTTGGTG 59.820 61.111 7.64 0.00 40.11 4.17
844 869 2.986306 GCGCTTCATGCTTGGTGCT 61.986 57.895 0.00 0.00 43.37 4.40
845 870 1.136147 CGCTTCATGCTTGGTGCTC 59.864 57.895 12.84 0.00 43.37 4.26
847 872 0.964358 GCTTCATGCTTGGTGCTCCT 60.964 55.000 6.34 0.00 43.37 3.69
848 873 1.093159 CTTCATGCTTGGTGCTCCTC 58.907 55.000 6.34 0.00 43.37 3.71
849 874 0.674581 TTCATGCTTGGTGCTCCTCG 60.675 55.000 6.34 0.00 43.37 4.63
850 875 2.437359 ATGCTTGGTGCTCCTCGC 60.437 61.111 6.34 8.88 43.37 5.03
865 892 3.849911 TCCTCGCACAAAAGAGTAGATG 58.150 45.455 0.00 0.00 32.88 2.90
927 954 2.443416 TCCCGATTTCTCAGTTCTCGA 58.557 47.619 0.00 0.00 0.00 4.04
936 963 7.359598 CGATTTCTCAGTTCTCGACAGATTTTT 60.360 37.037 0.00 0.00 0.00 1.94
964 992 7.064609 TGAGCGTTAACTTAATCTCCAAGAATG 59.935 37.037 3.71 0.00 0.00 2.67
980 1010 9.503427 CTCCAAGAATGTATAAAACCGATTTTC 57.497 33.333 0.00 0.00 38.91 2.29
1010 1040 6.992664 TGATTTTCTCCCCATTTTTCAAGA 57.007 33.333 0.00 0.00 0.00 3.02
1022 1053 6.018016 CCCATTTTTCAAGAAAATCGCTGTTT 60.018 34.615 8.62 0.00 39.69 2.83
1054 1085 7.206789 TGATTATCAGGGGTTCAGTTTATCA 57.793 36.000 0.00 0.00 0.00 2.15
1162 1203 3.446570 ACCGCCCGGACTTCTACG 61.447 66.667 14.44 0.00 38.96 3.51
1231 1272 4.731612 CAGCAGCGGCAGAGACGT 62.732 66.667 12.44 0.00 44.61 4.34
1314 1361 4.901511 AACCAGACCGGGTGGATA 57.098 55.556 27.25 0.00 41.32 2.59
1404 1451 1.781555 GTCGGACGTTGTCTGCATG 59.218 57.895 0.86 0.00 38.67 4.06
1471 1518 2.494918 GCGATGGCCTCTACGTGT 59.505 61.111 3.32 0.00 0.00 4.49
1623 1670 1.153901 CGCGACCACGGACAAGTAT 60.154 57.895 0.00 0.00 40.15 2.12
1644 1691 0.798776 CCACCAGATTCAAGCACGAC 59.201 55.000 0.00 0.00 0.00 4.34
1729 1776 1.535444 ATCTGGGTGTCCACGGTCA 60.535 57.895 0.00 0.00 38.32 4.02
1801 1848 4.299547 ACTCTGCGCTGCCGTTCA 62.300 61.111 9.73 0.00 36.67 3.18
1851 1898 1.153745 CCTCTGGTTCGGCTTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
2045 2092 0.252927 AGAACCAAGGAGGGGGAGAG 60.253 60.000 0.00 0.00 43.89 3.20
2077 2124 1.135083 CGGAGTACAGGCACGAGAATT 60.135 52.381 0.00 0.00 0.00 2.17
2089 2136 2.096248 ACGAGAATTCCGAGAGCTTCT 58.904 47.619 18.98 0.00 0.00 2.85
2207 2255 3.067461 TCGTCAAACCCCTGTGAATTTTG 59.933 43.478 0.00 0.00 0.00 2.44
2208 2256 3.181480 CGTCAAACCCCTGTGAATTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
2209 2257 4.036971 CGTCAAACCCCTGTGAATTTTGTA 59.963 41.667 0.00 0.00 0.00 2.41
2210 2258 5.278758 CGTCAAACCCCTGTGAATTTTGTAT 60.279 40.000 0.00 0.00 0.00 2.29
2211 2259 6.072397 CGTCAAACCCCTGTGAATTTTGTATA 60.072 38.462 0.00 0.00 0.00 1.47
2250 2302 4.627611 AAGCGAGGATCAAATGTGATTG 57.372 40.909 0.00 0.00 44.83 2.67
2251 2303 2.357009 AGCGAGGATCAAATGTGATTGC 59.643 45.455 0.00 2.93 44.83 3.56
2277 2329 6.127842 GGACCGGTTAAAATCTCAATGCTAAA 60.128 38.462 9.42 0.00 0.00 1.85
2281 2333 8.190784 CCGGTTAAAATCTCAATGCTAAAATCT 58.809 33.333 0.00 0.00 0.00 2.40
2282 2334 9.573133 CGGTTAAAATCTCAATGCTAAAATCTT 57.427 29.630 0.00 0.00 0.00 2.40
2291 2343 8.820933 TCTCAATGCTAAAATCTTATGTCTTCG 58.179 33.333 0.00 0.00 0.00 3.79
2292 2344 8.492673 TCAATGCTAAAATCTTATGTCTTCGT 57.507 30.769 0.00 0.00 0.00 3.85
2293 2345 8.390354 TCAATGCTAAAATCTTATGTCTTCGTG 58.610 33.333 0.00 0.00 0.00 4.35
2294 2346 7.849804 ATGCTAAAATCTTATGTCTTCGTGT 57.150 32.000 0.00 0.00 0.00 4.49
2295 2347 7.290857 TGCTAAAATCTTATGTCTTCGTGTC 57.709 36.000 0.00 0.00 0.00 3.67
2296 2348 6.312918 TGCTAAAATCTTATGTCTTCGTGTCC 59.687 38.462 0.00 0.00 0.00 4.02
2297 2349 6.535508 GCTAAAATCTTATGTCTTCGTGTCCT 59.464 38.462 0.00 0.00 0.00 3.85
2298 2350 7.705325 GCTAAAATCTTATGTCTTCGTGTCCTA 59.295 37.037 0.00 0.00 0.00 2.94
2299 2351 9.751542 CTAAAATCTTATGTCTTCGTGTCCTAT 57.248 33.333 0.00 0.00 0.00 2.57
2300 2352 8.649973 AAAATCTTATGTCTTCGTGTCCTATC 57.350 34.615 0.00 0.00 0.00 2.08
2301 2353 6.961360 ATCTTATGTCTTCGTGTCCTATCA 57.039 37.500 0.00 0.00 0.00 2.15
2302 2354 6.961360 TCTTATGTCTTCGTGTCCTATCAT 57.039 37.500 0.00 0.00 0.00 2.45
2303 2355 6.739112 TCTTATGTCTTCGTGTCCTATCATG 58.261 40.000 0.00 0.00 0.00 3.07
2304 2356 6.321435 TCTTATGTCTTCGTGTCCTATCATGT 59.679 38.462 0.00 0.00 0.00 3.21
2305 2357 4.110036 TGTCTTCGTGTCCTATCATGTG 57.890 45.455 0.00 0.00 0.00 3.21
2306 2358 2.860735 GTCTTCGTGTCCTATCATGTGC 59.139 50.000 0.00 0.00 0.00 4.57
2307 2359 1.854743 CTTCGTGTCCTATCATGTGCG 59.145 52.381 0.00 0.00 0.00 5.34
2308 2360 0.815095 TCGTGTCCTATCATGTGCGT 59.185 50.000 0.00 0.00 0.00 5.24
2309 2361 1.203758 TCGTGTCCTATCATGTGCGTT 59.796 47.619 0.00 0.00 0.00 4.84
2310 2362 1.324435 CGTGTCCTATCATGTGCGTTG 59.676 52.381 0.00 0.00 0.00 4.10
2311 2363 1.665679 GTGTCCTATCATGTGCGTTGG 59.334 52.381 0.00 0.00 0.00 3.77
2312 2364 0.657840 GTCCTATCATGTGCGTTGGC 59.342 55.000 0.00 0.00 40.52 4.52
2313 2365 0.463654 TCCTATCATGTGCGTTGGCC 60.464 55.000 0.00 0.00 38.85 5.36
2314 2366 0.747644 CCTATCATGTGCGTTGGCCA 60.748 55.000 0.00 0.00 38.85 5.36
2315 2367 1.311859 CTATCATGTGCGTTGGCCAT 58.688 50.000 6.09 0.00 38.85 4.40
2316 2368 1.002142 CTATCATGTGCGTTGGCCATG 60.002 52.381 6.09 3.11 43.38 3.66
2317 2369 1.303155 TCATGTGCGTTGGCCATGA 60.303 52.632 6.09 1.64 45.82 3.07
2318 2370 0.892814 TCATGTGCGTTGGCCATGAA 60.893 50.000 6.09 0.00 45.43 2.57
2319 2371 0.173935 CATGTGCGTTGGCCATGAAT 59.826 50.000 6.09 0.00 44.07 2.57
2320 2372 0.896923 ATGTGCGTTGGCCATGAATT 59.103 45.000 6.09 0.00 38.85 2.17
2321 2373 0.243365 TGTGCGTTGGCCATGAATTC 59.757 50.000 6.09 0.00 38.85 2.17
2322 2374 0.243365 GTGCGTTGGCCATGAATTCA 59.757 50.000 6.09 11.26 38.85 2.57
2323 2375 0.527113 TGCGTTGGCCATGAATTCAG 59.473 50.000 14.54 2.24 38.85 3.02
2324 2376 0.810648 GCGTTGGCCATGAATTCAGA 59.189 50.000 14.54 0.00 0.00 3.27
2325 2377 1.468054 GCGTTGGCCATGAATTCAGAC 60.468 52.381 14.54 3.88 0.00 3.51
2326 2378 1.133025 CGTTGGCCATGAATTCAGACC 59.867 52.381 14.54 14.41 0.00 3.85
2327 2379 2.170166 GTTGGCCATGAATTCAGACCA 58.830 47.619 18.16 18.16 0.00 4.02
2328 2380 1.838112 TGGCCATGAATTCAGACCAC 58.162 50.000 18.16 7.56 0.00 4.16
2329 2381 1.106285 GGCCATGAATTCAGACCACC 58.894 55.000 14.54 7.09 0.00 4.61
2330 2382 1.341383 GGCCATGAATTCAGACCACCT 60.341 52.381 14.54 0.00 0.00 4.00
2331 2383 2.450476 GCCATGAATTCAGACCACCTT 58.550 47.619 14.54 0.00 0.00 3.50
2332 2384 2.165030 GCCATGAATTCAGACCACCTTG 59.835 50.000 14.54 4.49 0.00 3.61
2333 2385 2.165030 CCATGAATTCAGACCACCTTGC 59.835 50.000 14.54 0.00 0.00 4.01
2334 2386 2.957402 TGAATTCAGACCACCTTGCT 57.043 45.000 3.38 0.00 0.00 3.91
2335 2387 2.783135 TGAATTCAGACCACCTTGCTC 58.217 47.619 3.38 0.00 0.00 4.26
2336 2388 1.734465 GAATTCAGACCACCTTGCTCG 59.266 52.381 0.00 0.00 0.00 5.03
2337 2389 0.687354 ATTCAGACCACCTTGCTCGT 59.313 50.000 0.00 0.00 0.00 4.18
2338 2390 0.033504 TTCAGACCACCTTGCTCGTC 59.966 55.000 0.00 0.00 0.00 4.20
2339 2391 1.734477 CAGACCACCTTGCTCGTCG 60.734 63.158 0.00 0.00 0.00 5.12
2340 2392 2.432628 GACCACCTTGCTCGTCGG 60.433 66.667 0.00 0.00 0.00 4.79
2341 2393 3.222354 GACCACCTTGCTCGTCGGT 62.222 63.158 0.00 0.00 0.00 4.69
2342 2394 1.870055 GACCACCTTGCTCGTCGGTA 61.870 60.000 0.00 0.00 0.00 4.02
2343 2395 1.153823 CCACCTTGCTCGTCGGTAG 60.154 63.158 0.00 0.00 0.00 3.18
2344 2396 1.585006 CACCTTGCTCGTCGGTAGT 59.415 57.895 0.00 0.00 0.00 2.73
2345 2397 0.456312 CACCTTGCTCGTCGGTAGTC 60.456 60.000 0.00 0.00 0.00 2.59
2346 2398 1.139095 CCTTGCTCGTCGGTAGTCC 59.861 63.158 0.00 0.00 0.00 3.85
2347 2399 1.139095 CTTGCTCGTCGGTAGTCCC 59.861 63.158 0.00 0.00 0.00 4.46
2348 2400 1.303888 TTGCTCGTCGGTAGTCCCT 60.304 57.895 0.00 0.00 0.00 4.20
2349 2401 0.896940 TTGCTCGTCGGTAGTCCCTT 60.897 55.000 0.00 0.00 0.00 3.95
2350 2402 0.896940 TGCTCGTCGGTAGTCCCTTT 60.897 55.000 0.00 0.00 0.00 3.11
2351 2403 0.245813 GCTCGTCGGTAGTCCCTTTT 59.754 55.000 0.00 0.00 0.00 2.27
2352 2404 1.337541 GCTCGTCGGTAGTCCCTTTTT 60.338 52.381 0.00 0.00 0.00 1.94
2372 2424 5.987019 TTTTATATAGGGAAGGCACAGGT 57.013 39.130 0.00 0.00 0.00 4.00
2373 2425 7.454553 TTTTTATATAGGGAAGGCACAGGTA 57.545 36.000 0.00 0.00 0.00 3.08
2374 2426 7.642094 TTTTATATAGGGAAGGCACAGGTAT 57.358 36.000 0.00 0.00 0.00 2.73
2375 2427 8.745149 TTTTATATAGGGAAGGCACAGGTATA 57.255 34.615 0.00 0.00 0.00 1.47
2376 2428 8.927059 TTTATATAGGGAAGGCACAGGTATAT 57.073 34.615 0.00 0.00 0.00 0.86
2378 2430 9.656323 TTATATAGGGAAGGCACAGGTATATAG 57.344 37.037 0.00 0.00 0.00 1.31
2379 2431 3.521727 AGGGAAGGCACAGGTATATAGG 58.478 50.000 0.00 0.00 0.00 2.57
2380 2432 3.144125 AGGGAAGGCACAGGTATATAGGA 59.856 47.826 0.00 0.00 0.00 2.94
2381 2433 3.908103 GGGAAGGCACAGGTATATAGGAA 59.092 47.826 0.00 0.00 0.00 3.36
2382 2434 4.349930 GGGAAGGCACAGGTATATAGGAAA 59.650 45.833 0.00 0.00 0.00 3.13
2383 2435 5.513267 GGGAAGGCACAGGTATATAGGAAAG 60.513 48.000 0.00 0.00 0.00 2.62
2384 2436 5.513267 GGAAGGCACAGGTATATAGGAAAGG 60.513 48.000 0.00 0.00 0.00 3.11
2385 2437 3.328050 AGGCACAGGTATATAGGAAAGGC 59.672 47.826 0.00 0.00 0.00 4.35
2386 2438 3.072476 GGCACAGGTATATAGGAAAGGCA 59.928 47.826 0.00 0.00 0.00 4.75
2387 2439 4.065789 GCACAGGTATATAGGAAAGGCAC 58.934 47.826 0.00 0.00 0.00 5.01
2388 2440 4.444306 GCACAGGTATATAGGAAAGGCACA 60.444 45.833 0.00 0.00 0.00 4.57
2389 2441 5.300752 CACAGGTATATAGGAAAGGCACAG 58.699 45.833 0.00 0.00 0.00 3.66
2390 2442 4.348168 ACAGGTATATAGGAAAGGCACAGG 59.652 45.833 0.00 0.00 0.00 4.00
2391 2443 3.328050 AGGTATATAGGAAAGGCACAGGC 59.672 47.826 0.00 0.00 40.13 4.85
2413 2465 2.279073 CCTGGGCGAGAGGGACTA 59.721 66.667 0.00 0.00 41.55 2.59
2414 2466 2.128507 CCTGGGCGAGAGGGACTAC 61.129 68.421 0.00 0.00 41.55 2.73
2415 2467 1.076632 CTGGGCGAGAGGGACTACT 60.077 63.158 0.00 0.00 41.55 2.57
2416 2468 0.183014 CTGGGCGAGAGGGACTACTA 59.817 60.000 0.00 0.00 41.55 1.82
2417 2469 0.851469 TGGGCGAGAGGGACTACTAT 59.149 55.000 0.00 0.00 41.55 2.12
2418 2470 1.202903 TGGGCGAGAGGGACTACTATC 60.203 57.143 0.00 0.00 41.55 2.08
2419 2471 1.074244 GGGCGAGAGGGACTACTATCT 59.926 57.143 0.00 0.00 41.55 1.98
2422 2474 2.039348 GCGAGAGGGACTACTATCTCCT 59.961 54.545 0.00 0.00 41.55 3.69
2439 2491 3.965026 CTCTGTCCCCTCTCGCCCA 62.965 68.421 0.00 0.00 0.00 5.36
2440 2492 3.465403 CTGTCCCCTCTCGCCCAG 61.465 72.222 0.00 0.00 0.00 4.45
2442 2494 4.779733 GTCCCCTCTCGCCCAGGA 62.780 72.222 0.00 0.00 31.91 3.86
2479 2531 2.109593 GGACAAACCGGACCACGT 59.890 61.111 9.46 0.00 42.24 4.49
2515 2567 1.208052 TCATCTTGAAGAGGAAGCCGG 59.792 52.381 7.13 0.00 31.44 6.13
2557 2609 1.179814 ACTGAAGAGAGAACCGCCGT 61.180 55.000 0.00 0.00 0.00 5.68
2561 2613 1.404391 GAAGAGAGAACCGCCGTCATA 59.596 52.381 0.00 0.00 0.00 2.15
2564 2625 2.232941 AGAGAGAACCGCCGTCATAAAA 59.767 45.455 0.00 0.00 0.00 1.52
2582 2643 1.174712 AAAACGTGCTGCAGCCATCT 61.175 50.000 34.64 14.96 41.18 2.90
2595 2656 1.142748 CCATCTCACCTCCTCGCAC 59.857 63.158 0.00 0.00 0.00 5.34
2636 2697 4.101448 GGTGACGGAGCCAGGCAT 62.101 66.667 15.80 0.00 0.00 4.40
2669 2730 4.512484 CAACCAAAGTTGTGGGTTTTCAT 58.488 39.130 4.58 0.00 46.88 2.57
2679 2741 0.970427 GGGTTTTCATCCGGGTGCAT 60.970 55.000 10.80 0.00 0.00 3.96
2688 2750 3.492353 CGGGTGCATGGGGAGGAT 61.492 66.667 0.00 0.00 0.00 3.24
2702 2764 0.266152 GAGGATGAGGGGGAGGAAGA 59.734 60.000 0.00 0.00 0.00 2.87
2736 2801 0.668535 GCCTTGAAGGAAACAACGCT 59.331 50.000 16.93 0.00 37.67 5.07
2812 2879 1.852157 AGCTCCCAACCCCACATCA 60.852 57.895 0.00 0.00 0.00 3.07
2815 2882 2.141011 CTCCCAACCCCACATCAGCA 62.141 60.000 0.00 0.00 0.00 4.41
2816 2883 1.000739 CCCAACCCCACATCAGCAT 59.999 57.895 0.00 0.00 0.00 3.79
2834 2901 1.138859 CATAGTCAGCCACCGGATTCA 59.861 52.381 9.46 0.00 0.00 2.57
2858 2925 2.420547 CGGATTGATGAGGAGGAAGCAA 60.421 50.000 0.00 0.00 0.00 3.91
2861 2928 3.507162 TTGATGAGGAGGAAGCAACAA 57.493 42.857 0.00 0.00 0.00 2.83
2869 2936 1.527380 GGAAGCAACAACACGGGGA 60.527 57.895 0.00 0.00 0.00 4.81
2908 2975 1.970352 GAAGGAGAGCAGCAGGGGAG 61.970 65.000 0.00 0.00 0.00 4.30
2909 2976 2.364842 GGAGAGCAGCAGGGGAGA 60.365 66.667 0.00 0.00 0.00 3.71
3017 3089 4.020617 CAGGACCCGCTGCCTCAA 62.021 66.667 0.00 0.00 30.41 3.02
3019 3091 3.056328 GGACCCGCTGCCTCAAAC 61.056 66.667 0.00 0.00 0.00 2.93
3020 3092 3.056328 GACCCGCTGCCTCAAACC 61.056 66.667 0.00 0.00 0.00 3.27
3021 3093 4.660938 ACCCGCTGCCTCAAACCC 62.661 66.667 0.00 0.00 0.00 4.11
3022 3094 4.351054 CCCGCTGCCTCAAACCCT 62.351 66.667 0.00 0.00 0.00 4.34
3023 3095 2.668632 CCGCTGCCTCAAACCCTA 59.331 61.111 0.00 0.00 0.00 3.53
3024 3096 1.450312 CCGCTGCCTCAAACCCTAG 60.450 63.158 0.00 0.00 0.00 3.02
3025 3097 1.450312 CGCTGCCTCAAACCCTAGG 60.450 63.158 0.06 0.06 35.86 3.02
3029 3101 2.590092 CCTCAAACCCTAGGCCCG 59.410 66.667 2.05 0.00 0.00 6.13
3030 3102 2.590092 CTCAAACCCTAGGCCCGG 59.410 66.667 2.05 0.00 0.00 5.73
3031 3103 3.699134 CTCAAACCCTAGGCCCGGC 62.699 68.421 2.05 0.00 0.00 6.13
3041 3113 4.875713 GGCCCGGCCGTTGATCAT 62.876 66.667 26.12 0.00 39.62 2.45
3042 3114 2.828549 GCCCGGCCGTTGATCATT 60.829 61.111 26.12 0.00 0.00 2.57
3043 3115 3.110139 CCCGGCCGTTGATCATTG 58.890 61.111 26.12 4.67 0.00 2.82
3044 3116 1.748879 CCCGGCCGTTGATCATTGT 60.749 57.895 26.12 0.00 0.00 2.71
3045 3117 1.312371 CCCGGCCGTTGATCATTGTT 61.312 55.000 26.12 0.00 0.00 2.83
3046 3118 0.179166 CCGGCCGTTGATCATTGTTG 60.179 55.000 26.12 0.00 0.00 3.33
3047 3119 0.798009 CGGCCGTTGATCATTGTTGC 60.798 55.000 19.50 0.00 0.00 4.17
3048 3120 0.243365 GGCCGTTGATCATTGTTGCA 59.757 50.000 0.00 0.00 0.00 4.08
3049 3121 1.336702 GGCCGTTGATCATTGTTGCAA 60.337 47.619 0.00 0.00 0.00 4.08
3050 3122 2.402305 GCCGTTGATCATTGTTGCAAA 58.598 42.857 0.00 0.00 0.00 3.68
3063 3135 4.007644 GCAAACCCCCTTGCCAGC 62.008 66.667 0.00 0.00 44.88 4.85
3064 3136 2.523902 CAAACCCCCTTGCCAGCA 60.524 61.111 0.00 0.00 0.00 4.41
3065 3137 2.203684 AAACCCCCTTGCCAGCAG 60.204 61.111 0.00 0.00 0.00 4.24
3075 3147 2.188994 GCCAGCAGCGATCCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
3076 3148 2.178890 GCCAGCAGCGATCCTCTTG 61.179 63.158 0.00 0.00 0.00 3.02
3077 3149 1.523258 CCAGCAGCGATCCTCTTGG 60.523 63.158 0.00 0.00 0.00 3.61
3078 3150 2.178890 CAGCAGCGATCCTCTTGGC 61.179 63.158 0.00 0.00 0.00 4.52
3079 3151 2.124983 GCAGCGATCCTCTTGGCA 60.125 61.111 0.00 0.00 0.00 4.92
3080 3152 2.178890 GCAGCGATCCTCTTGGCAG 61.179 63.158 0.00 0.00 0.00 4.85
3081 3153 2.178890 CAGCGATCCTCTTGGCAGC 61.179 63.158 0.00 0.00 0.00 5.25
3082 3154 2.124983 GCGATCCTCTTGGCAGCA 60.125 61.111 0.00 0.00 0.00 4.41
3083 3155 1.746615 GCGATCCTCTTGGCAGCAA 60.747 57.895 0.00 0.00 0.00 3.91
3084 3156 1.986575 GCGATCCTCTTGGCAGCAAC 61.987 60.000 0.00 0.00 0.00 4.17
3085 3157 1.372087 CGATCCTCTTGGCAGCAACC 61.372 60.000 0.00 0.00 0.00 3.77
3086 3158 0.034670 GATCCTCTTGGCAGCAACCT 60.035 55.000 0.00 0.00 0.00 3.50
3087 3159 0.407139 ATCCTCTTGGCAGCAACCTT 59.593 50.000 0.00 0.00 0.00 3.50
3088 3160 1.064003 TCCTCTTGGCAGCAACCTTA 58.936 50.000 0.00 0.00 0.00 2.69
3089 3161 1.635487 TCCTCTTGGCAGCAACCTTAT 59.365 47.619 0.00 0.00 0.00 1.73
3090 3162 2.843730 TCCTCTTGGCAGCAACCTTATA 59.156 45.455 0.00 0.00 0.00 0.98
3091 3163 3.118261 TCCTCTTGGCAGCAACCTTATAG 60.118 47.826 0.00 0.00 0.00 1.31
3092 3164 3.370953 CCTCTTGGCAGCAACCTTATAGT 60.371 47.826 0.00 0.00 0.00 2.12
3093 3165 4.141711 CCTCTTGGCAGCAACCTTATAGTA 60.142 45.833 0.00 0.00 0.00 1.82
3094 3166 5.023533 TCTTGGCAGCAACCTTATAGTAG 57.976 43.478 0.00 0.00 0.00 2.57
3095 3167 4.714802 TCTTGGCAGCAACCTTATAGTAGA 59.285 41.667 0.00 0.00 0.00 2.59
3096 3168 5.188948 TCTTGGCAGCAACCTTATAGTAGAA 59.811 40.000 0.00 0.00 0.00 2.10
3097 3169 5.429681 TGGCAGCAACCTTATAGTAGAAA 57.570 39.130 0.00 0.00 0.00 2.52
3098 3170 5.811190 TGGCAGCAACCTTATAGTAGAAAA 58.189 37.500 0.00 0.00 0.00 2.29
3099 3171 6.242396 TGGCAGCAACCTTATAGTAGAAAAA 58.758 36.000 0.00 0.00 0.00 1.94
3100 3172 6.374333 TGGCAGCAACCTTATAGTAGAAAAAG 59.626 38.462 0.00 0.00 0.00 2.27
3101 3173 6.258899 GCAGCAACCTTATAGTAGAAAAAGC 58.741 40.000 0.00 0.00 0.00 3.51
3102 3174 6.128007 GCAGCAACCTTATAGTAGAAAAAGCA 60.128 38.462 0.00 0.00 0.00 3.91
3103 3175 7.574967 GCAGCAACCTTATAGTAGAAAAAGCAA 60.575 37.037 0.00 0.00 0.00 3.91
3104 3176 7.750903 CAGCAACCTTATAGTAGAAAAAGCAAC 59.249 37.037 0.00 0.00 0.00 4.17
3105 3177 7.447238 AGCAACCTTATAGTAGAAAAAGCAACA 59.553 33.333 0.00 0.00 0.00 3.33
3106 3178 7.537649 GCAACCTTATAGTAGAAAAAGCAACAC 59.462 37.037 0.00 0.00 0.00 3.32
3107 3179 7.683437 ACCTTATAGTAGAAAAAGCAACACC 57.317 36.000 0.00 0.00 0.00 4.16
3108 3180 6.370718 ACCTTATAGTAGAAAAAGCAACACCG 59.629 38.462 0.00 0.00 0.00 4.94
3109 3181 6.592607 CCTTATAGTAGAAAAAGCAACACCGA 59.407 38.462 0.00 0.00 0.00 4.69
3110 3182 7.280205 CCTTATAGTAGAAAAAGCAACACCGAT 59.720 37.037 0.00 0.00 0.00 4.18
3111 3183 8.556213 TTATAGTAGAAAAAGCAACACCGATT 57.444 30.769 0.00 0.00 0.00 3.34
3112 3184 5.767816 AGTAGAAAAAGCAACACCGATTT 57.232 34.783 0.00 0.00 0.00 2.17
3113 3185 6.144078 AGTAGAAAAAGCAACACCGATTTT 57.856 33.333 0.00 0.00 0.00 1.82
3114 3186 7.266922 AGTAGAAAAAGCAACACCGATTTTA 57.733 32.000 0.00 0.00 0.00 1.52
3115 3187 7.708998 AGTAGAAAAAGCAACACCGATTTTAA 58.291 30.769 0.00 0.00 0.00 1.52
3116 3188 8.192110 AGTAGAAAAAGCAACACCGATTTTAAA 58.808 29.630 0.00 0.00 0.00 1.52
3117 3189 7.229228 AGAAAAAGCAACACCGATTTTAAAC 57.771 32.000 0.00 0.00 0.00 2.01
3118 3190 6.814146 AGAAAAAGCAACACCGATTTTAAACA 59.186 30.769 0.00 0.00 0.00 2.83
3119 3191 7.494298 AGAAAAAGCAACACCGATTTTAAACAT 59.506 29.630 0.00 0.00 0.00 2.71
3120 3192 6.523676 AAAGCAACACCGATTTTAAACATG 57.476 33.333 0.00 0.00 0.00 3.21
3121 3193 4.555262 AGCAACACCGATTTTAAACATGG 58.445 39.130 0.00 0.00 0.00 3.66
3122 3194 4.279671 AGCAACACCGATTTTAAACATGGA 59.720 37.500 0.00 0.00 0.00 3.41
3123 3195 4.985409 GCAACACCGATTTTAAACATGGAA 59.015 37.500 0.00 0.00 0.00 3.53
3124 3196 5.107645 GCAACACCGATTTTAAACATGGAAC 60.108 40.000 0.00 0.00 0.00 3.62
3140 3212 4.220693 TGGAACATCCAACAGATAGTGG 57.779 45.455 0.00 0.00 45.00 4.00
3141 3213 3.843619 TGGAACATCCAACAGATAGTGGA 59.156 43.478 0.00 0.00 45.00 4.02
3142 3214 4.474651 TGGAACATCCAACAGATAGTGGAT 59.525 41.667 0.00 0.00 45.00 3.41
3143 3215 5.044919 TGGAACATCCAACAGATAGTGGATT 60.045 40.000 2.41 0.00 45.00 3.01
3144 3216 5.888161 GGAACATCCAACAGATAGTGGATTT 59.112 40.000 2.41 2.19 36.58 2.17
3145 3217 6.378280 GGAACATCCAACAGATAGTGGATTTT 59.622 38.462 2.41 3.40 36.58 1.82
3146 3218 6.764308 ACATCCAACAGATAGTGGATTTTG 57.236 37.500 2.41 0.00 36.58 2.44
3147 3219 6.248433 ACATCCAACAGATAGTGGATTTTGT 58.752 36.000 2.41 0.00 36.58 2.83
3148 3220 6.375455 ACATCCAACAGATAGTGGATTTTGTC 59.625 38.462 2.41 0.00 36.58 3.18
3149 3221 5.875224 TCCAACAGATAGTGGATTTTGTCA 58.125 37.500 0.00 0.00 0.00 3.58
3150 3222 6.303054 TCCAACAGATAGTGGATTTTGTCAA 58.697 36.000 0.00 0.00 0.00 3.18
3151 3223 6.206634 TCCAACAGATAGTGGATTTTGTCAAC 59.793 38.462 0.00 0.00 0.00 3.18
3152 3224 6.016360 CCAACAGATAGTGGATTTTGTCAACA 60.016 38.462 0.00 0.00 32.79 3.33
3153 3225 7.424803 CAACAGATAGTGGATTTTGTCAACAA 58.575 34.615 0.00 0.00 32.79 2.83
3154 3226 7.765695 ACAGATAGTGGATTTTGTCAACAAT 57.234 32.000 0.00 0.00 32.79 2.71
3155 3227 7.596494 ACAGATAGTGGATTTTGTCAACAATG 58.404 34.615 0.00 0.00 32.79 2.82
3156 3228 7.448161 ACAGATAGTGGATTTTGTCAACAATGA 59.552 33.333 0.00 0.00 32.79 2.57
3157 3229 8.464404 CAGATAGTGGATTTTGTCAACAATGAT 58.536 33.333 0.00 0.00 38.01 2.45
3158 3230 9.028284 AGATAGTGGATTTTGTCAACAATGATT 57.972 29.630 0.00 0.00 38.01 2.57
3159 3231 9.294030 GATAGTGGATTTTGTCAACAATGATTC 57.706 33.333 0.00 0.00 38.01 2.52
3160 3232 7.053316 AGTGGATTTTGTCAACAATGATTCA 57.947 32.000 0.00 0.00 38.01 2.57
3161 3233 7.673180 AGTGGATTTTGTCAACAATGATTCAT 58.327 30.769 0.00 0.00 38.01 2.57
3162 3234 7.601130 AGTGGATTTTGTCAACAATGATTCATG 59.399 33.333 0.00 0.00 38.01 3.07
3163 3235 6.369340 TGGATTTTGTCAACAATGATTCATGC 59.631 34.615 0.00 0.00 38.01 4.06
3164 3236 6.183360 GGATTTTGTCAACAATGATTCATGCC 60.183 38.462 0.00 0.00 38.01 4.40
3165 3237 3.490800 TGTCAACAATGATTCATGCCG 57.509 42.857 0.00 0.00 38.01 5.69
3166 3238 2.187707 GTCAACAATGATTCATGCCGC 58.812 47.619 0.00 0.00 38.01 6.53
3167 3239 1.193644 CAACAATGATTCATGCCGCG 58.806 50.000 0.00 0.00 0.00 6.46
3168 3240 0.101040 AACAATGATTCATGCCGCGG 59.899 50.000 24.05 24.05 0.00 6.46
3169 3241 0.747644 ACAATGATTCATGCCGCGGA 60.748 50.000 33.48 15.19 0.00 5.54
3170 3242 0.317269 CAATGATTCATGCCGCGGAC 60.317 55.000 33.48 21.14 0.00 4.79
3171 3243 1.775039 AATGATTCATGCCGCGGACG 61.775 55.000 33.48 16.44 39.67 4.79
3172 3244 2.584970 GATTCATGCCGCGGACGA 60.585 61.111 33.48 18.76 43.93 4.20
3173 3245 1.956170 GATTCATGCCGCGGACGAT 60.956 57.895 33.48 14.53 43.93 3.73
3174 3246 1.498865 GATTCATGCCGCGGACGATT 61.499 55.000 33.48 16.92 43.93 3.34
3175 3247 0.249699 ATTCATGCCGCGGACGATTA 60.250 50.000 33.48 9.21 43.93 1.75
3176 3248 1.149361 TTCATGCCGCGGACGATTAC 61.149 55.000 33.48 9.92 43.93 1.89
3177 3249 1.591594 CATGCCGCGGACGATTACT 60.592 57.895 33.48 0.00 43.93 2.24
3178 3250 0.318360 CATGCCGCGGACGATTACTA 60.318 55.000 33.48 2.47 43.93 1.82
3179 3251 0.601558 ATGCCGCGGACGATTACTAT 59.398 50.000 33.48 4.93 43.93 2.12
3180 3252 0.039798 TGCCGCGGACGATTACTATC 60.040 55.000 33.48 6.69 43.93 2.08
3181 3253 0.039798 GCCGCGGACGATTACTATCA 60.040 55.000 33.48 0.00 43.93 2.15
3182 3254 1.965083 CCGCGGACGATTACTATCAG 58.035 55.000 24.07 0.00 43.93 2.90
3183 3255 1.534163 CCGCGGACGATTACTATCAGA 59.466 52.381 24.07 0.00 43.93 3.27
3184 3256 2.161808 CCGCGGACGATTACTATCAGAT 59.838 50.000 24.07 0.00 43.93 2.90
3185 3257 3.366070 CCGCGGACGATTACTATCAGATT 60.366 47.826 24.07 0.00 43.93 2.40
3186 3258 4.142752 CCGCGGACGATTACTATCAGATTA 60.143 45.833 24.07 0.00 43.93 1.75
3187 3259 5.388111 CGCGGACGATTACTATCAGATTAA 58.612 41.667 0.00 0.00 43.93 1.40
3188 3260 6.028368 CGCGGACGATTACTATCAGATTAAT 58.972 40.000 0.00 0.00 43.93 1.40
3189 3261 6.527023 CGCGGACGATTACTATCAGATTAATT 59.473 38.462 0.00 0.00 43.93 1.40
3190 3262 7.061905 CGCGGACGATTACTATCAGATTAATTT 59.938 37.037 0.00 0.00 43.93 1.82
3191 3263 8.709646 GCGGACGATTACTATCAGATTAATTTT 58.290 33.333 0.00 0.00 0.00 1.82
3211 3283 8.836268 AATTTTTACATGCAGATCAATGTTGT 57.164 26.923 12.24 6.15 0.00 3.32
3212 3284 9.926158 AATTTTTACATGCAGATCAATGTTGTA 57.074 25.926 12.24 5.40 0.00 2.41
3213 3285 9.926158 ATTTTTACATGCAGATCAATGTTGTAA 57.074 25.926 12.24 9.71 33.26 2.41
3214 3286 9.926158 TTTTTACATGCAGATCAATGTTGTAAT 57.074 25.926 12.24 0.00 34.20 1.89
3215 3287 9.571810 TTTTACATGCAGATCAATGTTGTAATC 57.428 29.630 12.24 0.00 34.20 1.75
3216 3288 6.762702 ACATGCAGATCAATGTTGTAATCA 57.237 33.333 0.00 0.00 0.00 2.57
3217 3289 7.160547 ACATGCAGATCAATGTTGTAATCAA 57.839 32.000 0.00 0.00 0.00 2.57
3230 3302 5.718724 TTGTAATCAACAACCATCATGCA 57.281 34.783 0.00 0.00 43.22 3.96
3231 3303 5.058149 TGTAATCAACAACCATCATGCAC 57.942 39.130 0.00 0.00 34.29 4.57
3232 3304 4.766373 TGTAATCAACAACCATCATGCACT 59.234 37.500 0.00 0.00 34.29 4.40
3233 3305 4.877378 AATCAACAACCATCATGCACTT 57.123 36.364 0.00 0.00 0.00 3.16
3234 3306 3.921119 TCAACAACCATCATGCACTTC 57.079 42.857 0.00 0.00 0.00 3.01
3235 3307 2.557924 TCAACAACCATCATGCACTTCC 59.442 45.455 0.00 0.00 0.00 3.46
3236 3308 1.167851 ACAACCATCATGCACTTCCG 58.832 50.000 0.00 0.00 0.00 4.30
3237 3309 0.179156 CAACCATCATGCACTTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
3239 3311 0.608856 ACCATCATGCACTTCCGCAA 60.609 50.000 0.00 0.00 46.87 4.85
3240 3312 0.742505 CCATCATGCACTTCCGCAAT 59.257 50.000 0.00 0.00 46.87 3.56
3241 3313 1.135527 CCATCATGCACTTCCGCAATT 59.864 47.619 0.00 0.00 46.87 2.32
3242 3314 2.456989 CATCATGCACTTCCGCAATTC 58.543 47.619 0.00 0.00 46.87 2.17
3243 3315 1.825090 TCATGCACTTCCGCAATTCT 58.175 45.000 0.00 0.00 46.87 2.40
3244 3316 1.739466 TCATGCACTTCCGCAATTCTC 59.261 47.619 0.00 0.00 46.87 2.87
3245 3317 1.741706 CATGCACTTCCGCAATTCTCT 59.258 47.619 0.00 0.00 46.87 3.10
3246 3318 1.442769 TGCACTTCCGCAATTCTCTC 58.557 50.000 0.00 0.00 39.45 3.20
3247 3319 1.270785 TGCACTTCCGCAATTCTCTCA 60.271 47.619 0.00 0.00 39.45 3.27
3248 3320 2.012673 GCACTTCCGCAATTCTCTCAT 58.987 47.619 0.00 0.00 0.00 2.90
3249 3321 2.031437 GCACTTCCGCAATTCTCTCATC 59.969 50.000 0.00 0.00 0.00 2.92
3250 3322 3.264947 CACTTCCGCAATTCTCTCATCA 58.735 45.455 0.00 0.00 0.00 3.07
3251 3323 3.875727 CACTTCCGCAATTCTCTCATCAT 59.124 43.478 0.00 0.00 0.00 2.45
3252 3324 5.052481 CACTTCCGCAATTCTCTCATCATA 58.948 41.667 0.00 0.00 0.00 2.15
3253 3325 5.050499 CACTTCCGCAATTCTCTCATCATAC 60.050 44.000 0.00 0.00 0.00 2.39
3254 3326 4.944619 TCCGCAATTCTCTCATCATACT 57.055 40.909 0.00 0.00 0.00 2.12
3255 3327 4.876125 TCCGCAATTCTCTCATCATACTC 58.124 43.478 0.00 0.00 0.00 2.59
3256 3328 4.342092 TCCGCAATTCTCTCATCATACTCA 59.658 41.667 0.00 0.00 0.00 3.41
3257 3329 4.685165 CCGCAATTCTCTCATCATACTCAG 59.315 45.833 0.00 0.00 0.00 3.35
3258 3330 4.150274 CGCAATTCTCTCATCATACTCAGC 59.850 45.833 0.00 0.00 0.00 4.26
3259 3331 5.055144 GCAATTCTCTCATCATACTCAGCA 58.945 41.667 0.00 0.00 0.00 4.41
3260 3332 5.526479 GCAATTCTCTCATCATACTCAGCAA 59.474 40.000 0.00 0.00 0.00 3.91
3261 3333 6.037940 GCAATTCTCTCATCATACTCAGCAAA 59.962 38.462 0.00 0.00 0.00 3.68
3262 3334 7.414873 GCAATTCTCTCATCATACTCAGCAAAA 60.415 37.037 0.00 0.00 0.00 2.44
3263 3335 6.974932 TTCTCTCATCATACTCAGCAAAAC 57.025 37.500 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
258 262 2.124903 GGTACGACGAATGCTACCATG 58.875 52.381 0.00 0.00 30.67 3.66
259 263 2.503920 GGTACGACGAATGCTACCAT 57.496 50.000 0.00 0.00 30.67 3.55
276 280 1.221840 GACTGCCCATCATCACGGT 59.778 57.895 0.00 0.00 0.00 4.83
277 281 1.884464 CGACTGCCCATCATCACGG 60.884 63.158 0.00 0.00 0.00 4.94
278 282 1.148157 GACGACTGCCCATCATCACG 61.148 60.000 0.00 0.00 0.00 4.35
279 283 1.148157 CGACGACTGCCCATCATCAC 61.148 60.000 0.00 0.00 0.00 3.06
312 328 0.179108 CCCGTCTCCAACCTTCGATC 60.179 60.000 0.00 0.00 0.00 3.69
394 413 1.290955 CCAGACGCCGTACTTCCAA 59.709 57.895 0.00 0.00 0.00 3.53
693 718 2.741985 CAGCGACAATGGCGGTCA 60.742 61.111 11.36 0.00 37.38 4.02
752 777 2.961721 CCACCGCATCGATCCGTG 60.962 66.667 8.12 8.30 0.00 4.94
753 778 3.138930 CTCCACCGCATCGATCCGT 62.139 63.158 8.12 0.00 0.00 4.69
769 794 2.514824 GGCAGCCGGTTCCATCTC 60.515 66.667 1.90 0.00 0.00 2.75
844 869 3.368427 CCATCTACTCTTTTGTGCGAGGA 60.368 47.826 0.00 0.00 0.00 3.71
845 870 2.932614 CCATCTACTCTTTTGTGCGAGG 59.067 50.000 0.00 0.00 0.00 4.63
847 872 3.953712 TCCATCTACTCTTTTGTGCGA 57.046 42.857 0.00 0.00 0.00 5.10
848 873 4.245660 TCTTCCATCTACTCTTTTGTGCG 58.754 43.478 0.00 0.00 0.00 5.34
849 874 6.560253 TTTCTTCCATCTACTCTTTTGTGC 57.440 37.500 0.00 0.00 0.00 4.57
850 875 8.558973 AGATTTCTTCCATCTACTCTTTTGTG 57.441 34.615 0.00 0.00 0.00 3.33
851 876 9.883142 CTAGATTTCTTCCATCTACTCTTTTGT 57.117 33.333 0.00 0.00 32.94 2.83
886 913 8.163408 TCGGGATATTGTTGATGAAATAATCCT 58.837 33.333 0.00 0.00 32.45 3.24
936 963 6.932400 TCTTGGAGATTAAGTTAACGCTCAAA 59.068 34.615 20.41 16.69 0.00 2.69
980 1010 1.312815 GGGGAGAAAATCATGGCGAG 58.687 55.000 0.00 0.00 0.00 5.03
1041 1072 4.751098 TGGTACGTGTTGATAAACTGAACC 59.249 41.667 0.00 0.00 0.00 3.62
1046 1077 7.556733 TTTCTTTGGTACGTGTTGATAAACT 57.443 32.000 0.00 0.00 0.00 2.66
1054 1085 6.687081 TCTGAATTTTCTTTGGTACGTGTT 57.313 33.333 0.00 0.00 0.00 3.32
1142 1183 3.588817 TAGAAGTCCGGGCGGTGGA 62.589 63.158 0.00 0.00 36.47 4.02
1152 1193 2.092882 GCGGTGCACGTAGAAGTCC 61.093 63.158 11.45 0.00 46.52 3.85
1180 1221 2.430367 GGGGTGGAACAAGCTCGT 59.570 61.111 0.00 0.00 44.16 4.18
1296 1343 0.178068 CTATCCACCCGGTCTGGTTG 59.822 60.000 13.75 0.00 36.12 3.77
1314 1361 1.078143 GCCGAAGCCCATGAACTCT 60.078 57.895 0.00 0.00 0.00 3.24
1386 1433 0.666274 TCATGCAGACAACGTCCGAC 60.666 55.000 0.00 0.00 32.18 4.79
1391 1438 1.460743 CGTTCATCATGCAGACAACGT 59.539 47.619 16.05 0.00 39.38 3.99
1395 1442 1.349234 CGTCGTTCATCATGCAGACA 58.651 50.000 0.00 0.00 0.00 3.41
1404 1451 2.215604 CGAGTCCGCGTCGTTCATC 61.216 63.158 4.92 0.00 32.62 2.92
1509 1556 1.444553 GTGGACGAGCGACTGGAAG 60.445 63.158 0.00 0.00 42.29 3.46
1540 1587 4.195334 CTTCCATGGGGAGCCGGG 62.195 72.222 13.02 0.00 46.01 5.73
1623 1670 0.321564 CGTGCTTGAATCTGGTGGGA 60.322 55.000 0.00 0.00 0.00 4.37
1707 1754 0.972983 CCGTGGACACCCAGATCTCT 60.973 60.000 0.00 0.00 44.55 3.10
1729 1776 3.512516 GGAGTACGTACCGGCGCT 61.513 66.667 21.80 2.10 34.88 5.92
1737 1784 1.068333 GCCGTGTTGAAGGAGTACGTA 60.068 52.381 0.00 0.00 33.28 3.57
1878 1925 4.373116 GGTTCCTGCGCGAGGTCA 62.373 66.667 12.10 0.00 43.37 4.02
1987 2034 2.597217 CAGTTTGCCGGAGCCCAA 60.597 61.111 5.05 0.00 38.69 4.12
2013 2060 2.283824 GGTTCTCCGGAAGCACCTA 58.716 57.895 16.03 0.00 45.86 3.08
2077 2124 1.607756 AGCACCAGAAGCTCTCGGA 60.608 57.895 2.48 0.00 38.01 4.55
2250 2302 1.729284 TGAGATTTTAACCGGTCCGC 58.271 50.000 8.04 0.00 0.00 5.54
2251 2303 3.486875 GCATTGAGATTTTAACCGGTCCG 60.487 47.826 8.04 3.60 0.00 4.79
2277 2329 7.348080 TGATAGGACACGAAGACATAAGATT 57.652 36.000 0.00 0.00 0.00 2.40
2281 2333 6.273071 CACATGATAGGACACGAAGACATAA 58.727 40.000 0.00 0.00 0.00 1.90
2282 2334 5.736207 GCACATGATAGGACACGAAGACATA 60.736 44.000 0.00 0.00 0.00 2.29
2283 2335 4.686972 CACATGATAGGACACGAAGACAT 58.313 43.478 0.00 0.00 0.00 3.06
2284 2336 3.676049 GCACATGATAGGACACGAAGACA 60.676 47.826 0.00 0.00 0.00 3.41
2285 2337 2.860735 GCACATGATAGGACACGAAGAC 59.139 50.000 0.00 0.00 0.00 3.01
2286 2338 2.479560 CGCACATGATAGGACACGAAGA 60.480 50.000 0.00 0.00 0.00 2.87
2287 2339 1.854743 CGCACATGATAGGACACGAAG 59.145 52.381 0.00 0.00 0.00 3.79
2288 2340 1.203758 ACGCACATGATAGGACACGAA 59.796 47.619 0.00 0.00 0.00 3.85
2289 2341 0.815095 ACGCACATGATAGGACACGA 59.185 50.000 0.00 0.00 0.00 4.35
2290 2342 1.324435 CAACGCACATGATAGGACACG 59.676 52.381 0.00 0.00 0.00 4.49
2291 2343 1.665679 CCAACGCACATGATAGGACAC 59.334 52.381 0.00 0.00 0.00 3.67
2292 2344 2.011548 GCCAACGCACATGATAGGACA 61.012 52.381 0.00 0.00 34.03 4.02
2293 2345 0.657840 GCCAACGCACATGATAGGAC 59.342 55.000 0.00 0.00 34.03 3.85
2294 2346 0.463654 GGCCAACGCACATGATAGGA 60.464 55.000 0.00 0.00 36.38 2.94
2295 2347 0.747644 TGGCCAACGCACATGATAGG 60.748 55.000 0.61 0.00 36.38 2.57
2296 2348 1.002142 CATGGCCAACGCACATGATAG 60.002 52.381 10.96 0.00 42.00 2.08
2297 2349 1.023502 CATGGCCAACGCACATGATA 58.976 50.000 10.96 0.00 42.00 2.15
2298 2350 0.680601 TCATGGCCAACGCACATGAT 60.681 50.000 10.96 0.00 42.61 2.45
2299 2351 0.892814 TTCATGGCCAACGCACATGA 60.893 50.000 10.96 3.68 44.20 3.07
2300 2352 0.173935 ATTCATGGCCAACGCACATG 59.826 50.000 10.96 0.52 41.37 3.21
2301 2353 0.896923 AATTCATGGCCAACGCACAT 59.103 45.000 10.96 0.00 36.38 3.21
2302 2354 0.243365 GAATTCATGGCCAACGCACA 59.757 50.000 10.96 0.00 36.38 4.57
2303 2355 0.243365 TGAATTCATGGCCAACGCAC 59.757 50.000 10.96 0.43 36.38 5.34
2304 2356 0.527113 CTGAATTCATGGCCAACGCA 59.473 50.000 10.96 1.47 36.38 5.24
2305 2357 0.810648 TCTGAATTCATGGCCAACGC 59.189 50.000 10.96 0.00 0.00 4.84
2306 2358 1.133025 GGTCTGAATTCATGGCCAACG 59.867 52.381 10.96 3.86 0.00 4.10
2307 2359 2.094545 GTGGTCTGAATTCATGGCCAAC 60.095 50.000 23.87 17.01 0.00 3.77
2308 2360 2.170166 GTGGTCTGAATTCATGGCCAA 58.830 47.619 23.87 11.81 0.00 4.52
2309 2361 1.616725 GGTGGTCTGAATTCATGGCCA 60.617 52.381 20.47 20.47 0.00 5.36
2310 2362 1.106285 GGTGGTCTGAATTCATGGCC 58.894 55.000 8.96 13.97 0.00 5.36
2311 2363 2.134789 AGGTGGTCTGAATTCATGGC 57.865 50.000 8.96 4.87 0.00 4.40
2312 2364 2.165030 GCAAGGTGGTCTGAATTCATGG 59.835 50.000 8.96 0.00 0.00 3.66
2313 2365 3.087031 AGCAAGGTGGTCTGAATTCATG 58.913 45.455 8.96 2.85 0.00 3.07
2314 2366 3.350833 GAGCAAGGTGGTCTGAATTCAT 58.649 45.455 8.96 0.00 41.34 2.57
2315 2367 2.783135 GAGCAAGGTGGTCTGAATTCA 58.217 47.619 8.12 8.12 41.34 2.57
2316 2368 1.734465 CGAGCAAGGTGGTCTGAATTC 59.266 52.381 0.00 0.00 42.30 2.17
2317 2369 1.072331 ACGAGCAAGGTGGTCTGAATT 59.928 47.619 5.95 0.00 42.30 2.17
2318 2370 0.687354 ACGAGCAAGGTGGTCTGAAT 59.313 50.000 5.95 0.00 42.30 2.57
2319 2371 0.033504 GACGAGCAAGGTGGTCTGAA 59.966 55.000 7.09 0.00 42.30 3.02
2320 2372 1.666011 GACGAGCAAGGTGGTCTGA 59.334 57.895 7.09 0.00 42.30 3.27
2321 2373 1.734477 CGACGAGCAAGGTGGTCTG 60.734 63.158 11.55 3.39 42.30 3.51
2322 2374 2.651361 CGACGAGCAAGGTGGTCT 59.349 61.111 11.55 0.00 42.30 3.85
2323 2375 1.870055 TACCGACGAGCAAGGTGGTC 61.870 60.000 0.00 4.61 41.16 4.02
2324 2376 1.874345 CTACCGACGAGCAAGGTGGT 61.874 60.000 0.00 0.00 38.90 4.16
2325 2377 1.153823 CTACCGACGAGCAAGGTGG 60.154 63.158 0.00 0.00 38.90 4.61
2326 2378 0.456312 GACTACCGACGAGCAAGGTG 60.456 60.000 0.00 0.00 38.90 4.00
2327 2379 1.593296 GGACTACCGACGAGCAAGGT 61.593 60.000 0.00 0.00 41.73 3.50
2328 2380 1.139095 GGACTACCGACGAGCAAGG 59.861 63.158 0.00 0.00 0.00 3.61
2329 2381 1.139095 GGGACTACCGACGAGCAAG 59.861 63.158 0.00 0.00 36.97 4.01
2330 2382 0.896940 AAGGGACTACCGACGAGCAA 60.897 55.000 0.00 0.00 46.96 3.91
2331 2383 0.896940 AAAGGGACTACCGACGAGCA 60.897 55.000 0.00 0.00 46.96 4.26
2332 2384 0.245813 AAAAGGGACTACCGACGAGC 59.754 55.000 0.00 0.00 46.96 5.03
2333 2385 2.738013 AAAAAGGGACTACCGACGAG 57.262 50.000 0.00 0.00 46.96 4.18
2349 2401 6.335781 ACCTGTGCCTTCCCTATATAAAAA 57.664 37.500 0.00 0.00 0.00 1.94
2350 2402 5.987019 ACCTGTGCCTTCCCTATATAAAA 57.013 39.130 0.00 0.00 0.00 1.52
2351 2403 8.927059 ATATACCTGTGCCTTCCCTATATAAA 57.073 34.615 0.00 0.00 0.00 1.40
2352 2404 9.656323 CTATATACCTGTGCCTTCCCTATATAA 57.344 37.037 0.00 0.00 0.00 0.98
2353 2405 8.232412 CCTATATACCTGTGCCTTCCCTATATA 58.768 40.741 0.00 0.00 0.00 0.86
2354 2406 7.076446 CCTATATACCTGTGCCTTCCCTATAT 58.924 42.308 0.00 0.00 0.00 0.86
2355 2407 6.221029 TCCTATATACCTGTGCCTTCCCTATA 59.779 42.308 0.00 0.00 0.00 1.31
2356 2408 5.017431 TCCTATATACCTGTGCCTTCCCTAT 59.983 44.000 0.00 0.00 0.00 2.57
2357 2409 4.358918 TCCTATATACCTGTGCCTTCCCTA 59.641 45.833 0.00 0.00 0.00 3.53
2358 2410 3.144125 TCCTATATACCTGTGCCTTCCCT 59.856 47.826 0.00 0.00 0.00 4.20
2359 2411 3.517612 TCCTATATACCTGTGCCTTCCC 58.482 50.000 0.00 0.00 0.00 3.97
2360 2412 5.513267 CCTTTCCTATATACCTGTGCCTTCC 60.513 48.000 0.00 0.00 0.00 3.46
2361 2413 5.552178 CCTTTCCTATATACCTGTGCCTTC 58.448 45.833 0.00 0.00 0.00 3.46
2362 2414 4.202472 GCCTTTCCTATATACCTGTGCCTT 60.202 45.833 0.00 0.00 0.00 4.35
2363 2415 3.328050 GCCTTTCCTATATACCTGTGCCT 59.672 47.826 0.00 0.00 0.00 4.75
2364 2416 3.072476 TGCCTTTCCTATATACCTGTGCC 59.928 47.826 0.00 0.00 0.00 5.01
2365 2417 4.065789 GTGCCTTTCCTATATACCTGTGC 58.934 47.826 0.00 0.00 0.00 4.57
2366 2418 5.290493 TGTGCCTTTCCTATATACCTGTG 57.710 43.478 0.00 0.00 0.00 3.66
2367 2419 4.348168 CCTGTGCCTTTCCTATATACCTGT 59.652 45.833 0.00 0.00 0.00 4.00
2368 2420 4.804261 GCCTGTGCCTTTCCTATATACCTG 60.804 50.000 0.00 0.00 0.00 4.00
2369 2421 3.328050 GCCTGTGCCTTTCCTATATACCT 59.672 47.826 0.00 0.00 0.00 3.08
2370 2422 3.676093 GCCTGTGCCTTTCCTATATACC 58.324 50.000 0.00 0.00 0.00 2.73
2396 2448 2.128507 GTAGTCCCTCTCGCCCAGG 61.129 68.421 0.00 0.00 0.00 4.45
2397 2449 0.183014 TAGTAGTCCCTCTCGCCCAG 59.817 60.000 0.00 0.00 0.00 4.45
2398 2450 0.851469 ATAGTAGTCCCTCTCGCCCA 59.149 55.000 0.00 0.00 0.00 5.36
2399 2451 1.074244 AGATAGTAGTCCCTCTCGCCC 59.926 57.143 0.00 0.00 0.00 6.13
2400 2452 2.429478 GAGATAGTAGTCCCTCTCGCC 58.571 57.143 0.00 0.00 0.00 5.54
2401 2453 2.039348 AGGAGATAGTAGTCCCTCTCGC 59.961 54.545 0.00 0.00 35.95 5.03
2402 2454 3.934068 GAGGAGATAGTAGTCCCTCTCG 58.066 54.545 0.00 0.00 40.07 4.04
2405 2457 4.506095 GGACAGAGGAGATAGTAGTCCCTC 60.506 54.167 0.00 0.00 42.73 4.30
2406 2458 3.396611 GGACAGAGGAGATAGTAGTCCCT 59.603 52.174 0.00 0.00 38.43 4.20
2407 2459 3.758425 GGACAGAGGAGATAGTAGTCCC 58.242 54.545 0.00 0.00 38.43 4.46
2408 2460 3.499021 GGGGACAGAGGAGATAGTAGTCC 60.499 56.522 0.00 0.00 42.44 3.85
2409 2461 3.396611 AGGGGACAGAGGAGATAGTAGTC 59.603 52.174 0.00 0.00 0.00 2.59
2410 2462 3.396611 GAGGGGACAGAGGAGATAGTAGT 59.603 52.174 0.00 0.00 0.00 2.73
2411 2463 3.655777 AGAGGGGACAGAGGAGATAGTAG 59.344 52.174 0.00 0.00 0.00 2.57
2412 2464 3.653836 GAGAGGGGACAGAGGAGATAGTA 59.346 52.174 0.00 0.00 0.00 1.82
2413 2465 2.445525 GAGAGGGGACAGAGGAGATAGT 59.554 54.545 0.00 0.00 0.00 2.12
2414 2466 2.552155 CGAGAGGGGACAGAGGAGATAG 60.552 59.091 0.00 0.00 0.00 2.08
2415 2467 1.422024 CGAGAGGGGACAGAGGAGATA 59.578 57.143 0.00 0.00 0.00 1.98
2416 2468 0.184933 CGAGAGGGGACAGAGGAGAT 59.815 60.000 0.00 0.00 0.00 2.75
2417 2469 1.610327 CGAGAGGGGACAGAGGAGA 59.390 63.158 0.00 0.00 0.00 3.71
2418 2470 2.124693 GCGAGAGGGGACAGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
2419 2471 2.043852 GCGAGAGGGGACAGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
2422 2474 3.965026 CTGGGCGAGAGGGGACAGA 62.965 68.421 0.00 0.00 0.00 3.41
2425 2477 4.779733 TCCTGGGCGAGAGGGGAC 62.780 72.222 0.00 0.00 0.00 4.46
2495 2547 1.208052 CCGGCTTCCTCTTCAAGATGA 59.792 52.381 0.00 0.00 0.00 2.92
2496 2548 1.661341 CCGGCTTCCTCTTCAAGATG 58.339 55.000 0.00 0.00 0.00 2.90
2497 2549 0.107459 GCCGGCTTCCTCTTCAAGAT 60.107 55.000 22.15 0.00 0.00 2.40
2527 2579 3.118261 TCTCTCTTCAGTGGTGTTGCTTT 60.118 43.478 0.00 0.00 0.00 3.51
2532 2584 2.224066 CGGTTCTCTCTTCAGTGGTGTT 60.224 50.000 0.00 0.00 0.00 3.32
2564 2625 1.580845 GAGATGGCTGCAGCACGTTT 61.581 55.000 37.63 22.96 44.36 3.60
2569 2630 2.045634 GGTGAGATGGCTGCAGCA 60.046 61.111 37.63 24.48 44.36 4.41
2578 2639 0.463204 ATGTGCGAGGAGGTGAGATG 59.537 55.000 0.00 0.00 0.00 2.90
2582 2643 1.191489 TTGGATGTGCGAGGAGGTGA 61.191 55.000 0.00 0.00 0.00 4.02
2595 2656 3.401243 GAAGGCGCCGCTTTGGATG 62.401 63.158 23.20 0.00 42.00 3.51
2679 2741 2.964039 TCCCCCTCATCCTCCCCA 60.964 66.667 0.00 0.00 0.00 4.96
2688 2750 0.649992 ATCCATCTTCCTCCCCCTCA 59.350 55.000 0.00 0.00 0.00 3.86
2702 2764 1.690219 AAGGCGGCTTCGAGATCCAT 61.690 55.000 19.90 0.00 35.61 3.41
2767 2834 0.255033 GGAGTAATTTCTGGGCCGGT 59.745 55.000 13.14 0.00 0.00 5.28
2774 2841 4.054671 GCTCTGGATCGGAGTAATTTCTG 58.945 47.826 13.42 0.00 38.95 3.02
2812 2879 1.050988 ATCCGGTGGCTGACTATGCT 61.051 55.000 0.00 0.00 0.00 3.79
2815 2882 1.414181 CTGAATCCGGTGGCTGACTAT 59.586 52.381 0.00 0.00 0.00 2.12
2816 2883 0.824109 CTGAATCCGGTGGCTGACTA 59.176 55.000 0.00 0.00 0.00 2.59
2834 2901 0.399091 TCCTCCTCATCAATCCGGCT 60.399 55.000 0.00 0.00 0.00 5.52
2841 2908 3.149196 GTTGTTGCTTCCTCCTCATCAA 58.851 45.455 0.00 0.00 0.00 2.57
2845 2912 1.810031 CGTGTTGTTGCTTCCTCCTCA 60.810 52.381 0.00 0.00 0.00 3.86
2869 2936 1.513158 CCAGATCTGAAGACGGCGT 59.487 57.895 24.62 14.65 0.00 5.68
2962 3034 3.670377 GTGTTGTGGGCCGCCTTC 61.670 66.667 15.75 5.50 0.00 3.46
3006 3078 1.450312 CTAGGGTTTGAGGCAGCGG 60.450 63.158 0.00 0.00 0.00 5.52
3008 3080 4.645809 CCTAGGGTTTGAGGCAGC 57.354 61.111 0.00 0.00 0.00 5.25
3012 3084 2.590092 CGGGCCTAGGGTTTGAGG 59.410 66.667 11.72 0.00 35.78 3.86
3014 3086 3.723922 GCCGGGCCTAGGGTTTGA 61.724 66.667 11.72 0.00 0.00 2.69
3024 3096 4.875713 ATGATCAACGGCCGGGCC 62.876 66.667 31.76 28.61 46.75 5.80
3025 3097 2.828549 AATGATCAACGGCCGGGC 60.829 61.111 31.76 20.04 0.00 6.13
3026 3098 1.312371 AACAATGATCAACGGCCGGG 61.312 55.000 31.76 21.42 0.00 5.73
3027 3099 0.179166 CAACAATGATCAACGGCCGG 60.179 55.000 31.76 13.23 0.00 6.13
3028 3100 0.798009 GCAACAATGATCAACGGCCG 60.798 55.000 26.86 26.86 0.00 6.13
3029 3101 0.243365 TGCAACAATGATCAACGGCC 59.757 50.000 0.00 0.00 0.00 6.13
3030 3102 2.063156 TTGCAACAATGATCAACGGC 57.937 45.000 0.00 0.25 0.00 5.68
3031 3103 2.730928 GGTTTGCAACAATGATCAACGG 59.269 45.455 0.00 0.00 0.00 4.44
3032 3104 2.730928 GGGTTTGCAACAATGATCAACG 59.269 45.455 0.00 0.00 0.00 4.10
3033 3105 3.066380 GGGGTTTGCAACAATGATCAAC 58.934 45.455 0.00 0.00 0.00 3.18
3034 3106 2.038295 GGGGGTTTGCAACAATGATCAA 59.962 45.455 0.00 0.00 0.00 2.57
3035 3107 1.622811 GGGGGTTTGCAACAATGATCA 59.377 47.619 0.00 0.00 0.00 2.92
3036 3108 1.901833 AGGGGGTTTGCAACAATGATC 59.098 47.619 0.00 0.00 0.00 2.92
3037 3109 2.028561 AGGGGGTTTGCAACAATGAT 57.971 45.000 0.00 0.00 0.00 2.45
3038 3110 1.415659 CAAGGGGGTTTGCAACAATGA 59.584 47.619 0.00 0.00 0.00 2.57
3039 3111 1.881591 CAAGGGGGTTTGCAACAATG 58.118 50.000 0.00 0.00 0.00 2.82
3047 3119 2.523902 TGCTGGCAAGGGGGTTTG 60.524 61.111 0.00 0.00 0.00 2.93
3048 3120 2.203684 CTGCTGGCAAGGGGGTTT 60.204 61.111 0.00 0.00 0.00 3.27
3052 3124 4.809496 ATCGCTGCTGGCAAGGGG 62.809 66.667 0.00 0.00 41.91 4.79
3053 3125 3.207669 GATCGCTGCTGGCAAGGG 61.208 66.667 0.00 0.00 41.91 3.95
3054 3126 3.207669 GGATCGCTGCTGGCAAGG 61.208 66.667 0.00 0.00 41.91 3.61
3055 3127 2.124819 AGGATCGCTGCTGGCAAG 60.125 61.111 0.00 0.00 41.91 4.01
3056 3128 2.124983 GAGGATCGCTGCTGGCAA 60.125 61.111 0.00 0.00 41.91 4.52
3057 3129 2.663075 AAGAGGATCGCTGCTGGCA 61.663 57.895 0.00 0.00 42.67 4.92
3058 3130 2.178890 CAAGAGGATCGCTGCTGGC 61.179 63.158 0.00 0.00 42.67 4.85
3059 3131 1.523258 CCAAGAGGATCGCTGCTGG 60.523 63.158 0.00 0.00 42.67 4.85
3060 3132 2.178890 GCCAAGAGGATCGCTGCTG 61.179 63.158 0.00 0.00 42.67 4.41
3061 3133 2.188994 GCCAAGAGGATCGCTGCT 59.811 61.111 0.00 0.00 42.67 4.24
3062 3134 2.124983 TGCCAAGAGGATCGCTGC 60.125 61.111 0.00 0.00 42.67 5.25
3063 3135 2.178890 GCTGCCAAGAGGATCGCTG 61.179 63.158 0.00 0.00 42.67 5.18
3064 3136 2.188994 GCTGCCAAGAGGATCGCT 59.811 61.111 0.00 0.00 42.67 4.93
3065 3137 1.746615 TTGCTGCCAAGAGGATCGC 60.747 57.895 0.00 0.00 42.67 4.58
3066 3138 1.372087 GGTTGCTGCCAAGAGGATCG 61.372 60.000 0.00 0.00 42.67 3.69
3067 3139 0.034670 AGGTTGCTGCCAAGAGGATC 60.035 55.000 0.00 0.00 36.89 3.36
3068 3140 0.407139 AAGGTTGCTGCCAAGAGGAT 59.593 50.000 0.00 0.00 36.89 3.24
3069 3141 1.064003 TAAGGTTGCTGCCAAGAGGA 58.936 50.000 0.00 0.00 36.89 3.71
3070 3142 2.134789 ATAAGGTTGCTGCCAAGAGG 57.865 50.000 0.00 0.00 38.23 3.69
3071 3143 3.878778 ACTATAAGGTTGCTGCCAAGAG 58.121 45.455 0.00 0.00 0.00 2.85
3072 3144 4.714802 TCTACTATAAGGTTGCTGCCAAGA 59.285 41.667 0.00 0.00 0.00 3.02
3073 3145 5.023533 TCTACTATAAGGTTGCTGCCAAG 57.976 43.478 0.00 0.00 0.00 3.61
3074 3146 5.429681 TTCTACTATAAGGTTGCTGCCAA 57.570 39.130 0.00 0.00 0.00 4.52
3075 3147 5.429681 TTTCTACTATAAGGTTGCTGCCA 57.570 39.130 0.00 0.00 0.00 4.92
3076 3148 6.678164 GCTTTTTCTACTATAAGGTTGCTGCC 60.678 42.308 0.00 0.00 0.00 4.85
3077 3149 6.128007 TGCTTTTTCTACTATAAGGTTGCTGC 60.128 38.462 0.00 0.00 0.00 5.25
3078 3150 7.377766 TGCTTTTTCTACTATAAGGTTGCTG 57.622 36.000 0.00 0.00 0.00 4.41
3079 3151 7.447238 TGTTGCTTTTTCTACTATAAGGTTGCT 59.553 33.333 0.00 0.00 0.00 3.91
3080 3152 7.537649 GTGTTGCTTTTTCTACTATAAGGTTGC 59.462 37.037 0.00 0.00 0.00 4.17
3081 3153 8.021396 GGTGTTGCTTTTTCTACTATAAGGTTG 58.979 37.037 0.00 0.00 0.00 3.77
3082 3154 7.094933 CGGTGTTGCTTTTTCTACTATAAGGTT 60.095 37.037 0.00 0.00 0.00 3.50
3083 3155 6.370718 CGGTGTTGCTTTTTCTACTATAAGGT 59.629 38.462 0.00 0.00 0.00 3.50
3084 3156 6.592607 TCGGTGTTGCTTTTTCTACTATAAGG 59.407 38.462 0.00 0.00 0.00 2.69
3085 3157 7.591006 TCGGTGTTGCTTTTTCTACTATAAG 57.409 36.000 0.00 0.00 0.00 1.73
3086 3158 8.556213 AATCGGTGTTGCTTTTTCTACTATAA 57.444 30.769 0.00 0.00 0.00 0.98
3087 3159 8.556213 AAATCGGTGTTGCTTTTTCTACTATA 57.444 30.769 0.00 0.00 0.00 1.31
3088 3160 7.448748 AAATCGGTGTTGCTTTTTCTACTAT 57.551 32.000 0.00 0.00 0.00 2.12
3089 3161 6.870971 AAATCGGTGTTGCTTTTTCTACTA 57.129 33.333 0.00 0.00 0.00 1.82
3090 3162 5.767816 AAATCGGTGTTGCTTTTTCTACT 57.232 34.783 0.00 0.00 0.00 2.57
3091 3163 7.917720 TTAAAATCGGTGTTGCTTTTTCTAC 57.082 32.000 0.00 0.00 0.00 2.59
3092 3164 7.974501 TGTTTAAAATCGGTGTTGCTTTTTCTA 59.025 29.630 0.00 0.00 0.00 2.10
3093 3165 6.814146 TGTTTAAAATCGGTGTTGCTTTTTCT 59.186 30.769 0.00 0.00 0.00 2.52
3094 3166 6.994992 TGTTTAAAATCGGTGTTGCTTTTTC 58.005 32.000 0.00 0.00 0.00 2.29
3095 3167 6.969828 TGTTTAAAATCGGTGTTGCTTTTT 57.030 29.167 0.00 0.00 0.00 1.94
3096 3168 6.018343 CCATGTTTAAAATCGGTGTTGCTTTT 60.018 34.615 0.00 0.00 0.00 2.27
3097 3169 5.465056 CCATGTTTAAAATCGGTGTTGCTTT 59.535 36.000 0.00 0.00 0.00 3.51
3098 3170 4.987912 CCATGTTTAAAATCGGTGTTGCTT 59.012 37.500 0.00 0.00 0.00 3.91
3099 3171 4.279671 TCCATGTTTAAAATCGGTGTTGCT 59.720 37.500 0.00 0.00 0.00 3.91
3100 3172 4.551388 TCCATGTTTAAAATCGGTGTTGC 58.449 39.130 0.00 0.00 0.00 4.17
3101 3173 5.980116 TGTTCCATGTTTAAAATCGGTGTTG 59.020 36.000 0.00 0.00 0.00 3.33
3102 3174 6.150396 TGTTCCATGTTTAAAATCGGTGTT 57.850 33.333 0.00 0.00 0.00 3.32
3103 3175 5.776173 TGTTCCATGTTTAAAATCGGTGT 57.224 34.783 0.00 0.00 0.00 4.16
3104 3176 5.804979 GGATGTTCCATGTTTAAAATCGGTG 59.195 40.000 0.00 0.00 36.28 4.94
3105 3177 5.478679 TGGATGTTCCATGTTTAAAATCGGT 59.521 36.000 0.00 0.00 42.67 4.69
3106 3178 5.960113 TGGATGTTCCATGTTTAAAATCGG 58.040 37.500 0.00 0.00 42.67 4.18
3119 3191 3.843619 TCCACTATCTGTTGGATGTTCCA 59.156 43.478 0.00 0.00 46.61 3.53
3120 3192 4.487714 TCCACTATCTGTTGGATGTTCC 57.512 45.455 0.00 0.00 35.98 3.62
3121 3193 7.094205 ACAAAATCCACTATCTGTTGGATGTTC 60.094 37.037 3.90 0.00 36.98 3.18
3122 3194 6.721208 ACAAAATCCACTATCTGTTGGATGTT 59.279 34.615 3.90 2.30 36.98 2.71
3123 3195 6.248433 ACAAAATCCACTATCTGTTGGATGT 58.752 36.000 3.90 0.00 36.98 3.06
3124 3196 6.375174 TGACAAAATCCACTATCTGTTGGATG 59.625 38.462 3.90 0.00 36.98 3.51
3125 3197 6.484288 TGACAAAATCCACTATCTGTTGGAT 58.516 36.000 0.00 0.00 37.82 3.41
3126 3198 5.875224 TGACAAAATCCACTATCTGTTGGA 58.125 37.500 0.00 0.00 33.00 3.53
3127 3199 6.016360 TGTTGACAAAATCCACTATCTGTTGG 60.016 38.462 0.00 0.00 0.00 3.77
3128 3200 6.969366 TGTTGACAAAATCCACTATCTGTTG 58.031 36.000 0.00 0.00 0.00 3.33
3129 3201 7.581213 TTGTTGACAAAATCCACTATCTGTT 57.419 32.000 0.00 0.00 32.11 3.16
3130 3202 7.448161 TCATTGTTGACAAAATCCACTATCTGT 59.552 33.333 0.10 0.00 39.55 3.41
3131 3203 7.819644 TCATTGTTGACAAAATCCACTATCTG 58.180 34.615 0.10 0.00 39.55 2.90
3132 3204 8.585471 ATCATTGTTGACAAAATCCACTATCT 57.415 30.769 0.10 0.00 39.55 1.98
3133 3205 9.294030 GAATCATTGTTGACAAAATCCACTATC 57.706 33.333 0.10 0.00 39.55 2.08
3134 3206 8.805175 TGAATCATTGTTGACAAAATCCACTAT 58.195 29.630 0.10 0.00 39.55 2.12
3135 3207 8.175925 TGAATCATTGTTGACAAAATCCACTA 57.824 30.769 0.10 0.00 39.55 2.74
3136 3208 7.053316 TGAATCATTGTTGACAAAATCCACT 57.947 32.000 0.10 0.00 39.55 4.00
3137 3209 7.622672 GCATGAATCATTGTTGACAAAATCCAC 60.623 37.037 0.00 0.00 39.55 4.02
3138 3210 6.369340 GCATGAATCATTGTTGACAAAATCCA 59.631 34.615 0.00 0.00 39.55 3.41
3139 3211 6.183360 GGCATGAATCATTGTTGACAAAATCC 60.183 38.462 0.00 0.00 39.55 3.01
3140 3212 6.454583 CGGCATGAATCATTGTTGACAAAATC 60.455 38.462 0.00 0.00 39.55 2.17
3141 3213 5.349270 CGGCATGAATCATTGTTGACAAAAT 59.651 36.000 0.00 0.00 39.55 1.82
3142 3214 4.685165 CGGCATGAATCATTGTTGACAAAA 59.315 37.500 0.00 0.00 39.55 2.44
3143 3215 4.236147 CGGCATGAATCATTGTTGACAAA 58.764 39.130 0.00 0.00 39.55 2.83
3144 3216 3.835779 CGGCATGAATCATTGTTGACAA 58.164 40.909 0.00 0.00 40.51 3.18
3145 3217 2.415759 GCGGCATGAATCATTGTTGACA 60.416 45.455 0.00 0.00 33.85 3.58
3146 3218 2.187707 GCGGCATGAATCATTGTTGAC 58.812 47.619 0.00 0.00 33.85 3.18
3147 3219 1.202166 CGCGGCATGAATCATTGTTGA 60.202 47.619 0.00 0.00 36.00 3.18
3148 3220 1.193644 CGCGGCATGAATCATTGTTG 58.806 50.000 0.00 0.00 0.00 3.33
3149 3221 0.101040 CCGCGGCATGAATCATTGTT 59.899 50.000 14.67 0.00 0.00 2.83
3150 3222 0.747644 TCCGCGGCATGAATCATTGT 60.748 50.000 23.51 0.00 0.00 2.71
3151 3223 0.317269 GTCCGCGGCATGAATCATTG 60.317 55.000 23.51 0.00 0.00 2.82
3152 3224 1.775039 CGTCCGCGGCATGAATCATT 61.775 55.000 23.51 0.00 0.00 2.57
3153 3225 2.246739 CGTCCGCGGCATGAATCAT 61.247 57.895 23.51 0.00 0.00 2.45
3154 3226 2.642996 ATCGTCCGCGGCATGAATCA 62.643 55.000 23.51 0.00 38.89 2.57
3155 3227 1.498865 AATCGTCCGCGGCATGAATC 61.499 55.000 23.51 3.46 38.89 2.52
3156 3228 0.249699 TAATCGTCCGCGGCATGAAT 60.250 50.000 23.51 15.30 38.89 2.57
3157 3229 1.142097 TAATCGTCCGCGGCATGAA 59.858 52.632 23.51 0.00 38.89 2.57
3158 3230 1.590525 GTAATCGTCCGCGGCATGA 60.591 57.895 23.51 19.92 38.89 3.07
3159 3231 0.318360 TAGTAATCGTCCGCGGCATG 60.318 55.000 23.51 15.06 38.89 4.06
3160 3232 0.601558 ATAGTAATCGTCCGCGGCAT 59.398 50.000 23.51 9.45 38.89 4.40
3161 3233 0.039798 GATAGTAATCGTCCGCGGCA 60.040 55.000 23.51 7.06 38.89 5.69
3162 3234 0.039798 TGATAGTAATCGTCCGCGGC 60.040 55.000 23.51 15.21 38.89 6.53
3163 3235 1.534163 TCTGATAGTAATCGTCCGCGG 59.466 52.381 22.12 22.12 38.89 6.46
3164 3236 2.963498 TCTGATAGTAATCGTCCGCG 57.037 50.000 0.00 0.00 34.60 6.46
3165 3237 7.813852 AATTAATCTGATAGTAATCGTCCGC 57.186 36.000 0.00 0.00 34.60 5.54
3185 3257 9.926158 ACAACATTGATCTGCATGTAAAAATTA 57.074 25.926 0.00 0.00 0.00 1.40
3186 3258 8.836268 ACAACATTGATCTGCATGTAAAAATT 57.164 26.923 0.00 0.00 0.00 1.82
3187 3259 9.926158 TTACAACATTGATCTGCATGTAAAAAT 57.074 25.926 0.00 0.00 32.93 1.82
3188 3260 9.926158 ATTACAACATTGATCTGCATGTAAAAA 57.074 25.926 13.32 7.00 36.33 1.94
3189 3261 9.571810 GATTACAACATTGATCTGCATGTAAAA 57.428 29.630 13.32 7.22 36.33 1.52
3190 3262 8.738106 TGATTACAACATTGATCTGCATGTAAA 58.262 29.630 13.32 7.45 36.33 2.01
3191 3263 8.278729 TGATTACAACATTGATCTGCATGTAA 57.721 30.769 12.40 12.40 36.75 2.41
3192 3264 7.862512 TGATTACAACATTGATCTGCATGTA 57.137 32.000 0.00 0.00 0.00 2.29
3193 3265 6.762702 TGATTACAACATTGATCTGCATGT 57.237 33.333 0.00 0.00 0.00 3.21
3208 3280 5.243507 AGTGCATGATGGTTGTTGATTACAA 59.756 36.000 0.00 0.00 44.31 2.41
3209 3281 4.766373 AGTGCATGATGGTTGTTGATTACA 59.234 37.500 0.00 0.00 34.12 2.41
3210 3282 5.314923 AGTGCATGATGGTTGTTGATTAC 57.685 39.130 0.00 0.00 0.00 1.89
3211 3283 5.105797 GGAAGTGCATGATGGTTGTTGATTA 60.106 40.000 0.00 0.00 0.00 1.75
3212 3284 4.322198 GGAAGTGCATGATGGTTGTTGATT 60.322 41.667 0.00 0.00 0.00 2.57
3213 3285 3.194116 GGAAGTGCATGATGGTTGTTGAT 59.806 43.478 0.00 0.00 0.00 2.57
3214 3286 2.557924 GGAAGTGCATGATGGTTGTTGA 59.442 45.455 0.00 0.00 0.00 3.18
3215 3287 2.669113 CGGAAGTGCATGATGGTTGTTG 60.669 50.000 0.00 0.00 0.00 3.33
3216 3288 1.541147 CGGAAGTGCATGATGGTTGTT 59.459 47.619 0.00 0.00 0.00 2.83
3217 3289 1.167851 CGGAAGTGCATGATGGTTGT 58.832 50.000 0.00 0.00 0.00 3.32
3218 3290 0.179156 GCGGAAGTGCATGATGGTTG 60.179 55.000 0.00 0.00 34.15 3.77
3219 3291 0.608856 TGCGGAAGTGCATGATGGTT 60.609 50.000 0.00 0.00 40.62 3.67
3220 3292 0.608856 TTGCGGAAGTGCATGATGGT 60.609 50.000 0.00 0.00 45.78 3.55
3221 3293 0.742505 ATTGCGGAAGTGCATGATGG 59.257 50.000 0.00 0.00 45.78 3.51
3222 3294 2.098607 AGAATTGCGGAAGTGCATGATG 59.901 45.455 0.00 0.00 45.78 3.07
3223 3295 2.357009 GAGAATTGCGGAAGTGCATGAT 59.643 45.455 0.00 0.00 45.78 2.45
3224 3296 1.739466 GAGAATTGCGGAAGTGCATGA 59.261 47.619 0.00 0.00 45.78 3.07
3225 3297 1.741706 AGAGAATTGCGGAAGTGCATG 59.258 47.619 0.00 0.00 45.78 4.06
3226 3298 2.012673 GAGAGAATTGCGGAAGTGCAT 58.987 47.619 0.00 0.00 45.78 3.96
3227 3299 1.270785 TGAGAGAATTGCGGAAGTGCA 60.271 47.619 0.00 0.00 44.61 4.57
3228 3300 1.442769 TGAGAGAATTGCGGAAGTGC 58.557 50.000 0.00 0.00 0.00 4.40
3229 3301 3.264947 TGATGAGAGAATTGCGGAAGTG 58.735 45.455 0.00 0.00 0.00 3.16
3230 3302 3.616956 TGATGAGAGAATTGCGGAAGT 57.383 42.857 0.00 0.00 0.00 3.01
3231 3303 5.295950 AGTATGATGAGAGAATTGCGGAAG 58.704 41.667 0.00 0.00 0.00 3.46
3232 3304 5.163416 TGAGTATGATGAGAGAATTGCGGAA 60.163 40.000 0.00 0.00 0.00 4.30
3233 3305 4.342092 TGAGTATGATGAGAGAATTGCGGA 59.658 41.667 0.00 0.00 0.00 5.54
3234 3306 4.625028 TGAGTATGATGAGAGAATTGCGG 58.375 43.478 0.00 0.00 0.00 5.69
3235 3307 4.150274 GCTGAGTATGATGAGAGAATTGCG 59.850 45.833 0.00 0.00 0.00 4.85
3236 3308 5.055144 TGCTGAGTATGATGAGAGAATTGC 58.945 41.667 0.00 0.00 0.00 3.56
3237 3309 7.549615 TTTGCTGAGTATGATGAGAGAATTG 57.450 36.000 0.00 0.00 0.00 2.32
3238 3310 7.983307 GTTTTGCTGAGTATGATGAGAGAATT 58.017 34.615 0.00 0.00 0.00 2.17
3239 3311 7.551035 GTTTTGCTGAGTATGATGAGAGAAT 57.449 36.000 0.00 0.00 0.00 2.40
3240 3312 6.974932 GTTTTGCTGAGTATGATGAGAGAA 57.025 37.500 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.