Multiple sequence alignment - TraesCS3A01G436300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G436300 chr3A 100.000 5277 0 0 1 5277 679915260 679920536 0.000000e+00 9745.0
1 TraesCS3A01G436300 chr3A 100.000 3406 0 0 5488 8893 679920747 679924152 0.000000e+00 6290.0
2 TraesCS3A01G436300 chr3A 96.826 1985 58 3 1612 3594 85017234 85019215 0.000000e+00 3312.0
3 TraesCS3A01G436300 chr3A 96.423 1985 51 4 1612 3594 51592604 51590638 0.000000e+00 3254.0
4 TraesCS3A01G436300 chr3A 94.494 2125 58 19 5488 7561 739381076 739378960 0.000000e+00 3221.0
5 TraesCS3A01G436300 chr3A 94.171 2093 95 15 5488 7561 11043275 11045359 0.000000e+00 3164.0
6 TraesCS3A01G436300 chr3A 96.220 1799 59 6 5488 7284 745499725 745501516 0.000000e+00 2937.0
7 TraesCS3A01G436300 chr3A 91.498 988 74 7 634 1613 714939068 714940053 0.000000e+00 1351.0
8 TraesCS3A01G436300 chr3A 91.597 714 53 7 8081 8791 714940659 714941368 0.000000e+00 979.0
9 TraesCS3A01G436300 chr3A 92.830 530 35 3 7561 8089 714940050 714940577 0.000000e+00 765.0
10 TraesCS3A01G436300 chr3A 88.079 604 42 12 1 582 714933512 714934107 0.000000e+00 689.0
11 TraesCS3A01G436300 chr3A 96.707 334 8 2 3596 3929 85026723 85027053 3.630000e-153 553.0
12 TraesCS3A01G436300 chr3A 96.935 261 7 1 3599 3859 739381880 739381621 3.810000e-118 436.0
13 TraesCS3A01G436300 chr3A 94.318 264 13 2 3599 3862 51583371 51583110 3.870000e-108 403.0
14 TraesCS3A01G436300 chr3A 97.044 203 5 1 3596 3798 8247148 8247349 3.070000e-89 340.0
15 TraesCS3A01G436300 chr3A 96.000 75 3 0 574 648 714938977 714939051 1.210000e-23 122.0
16 TraesCS3A01G436300 chr2A 96.925 1984 55 3 1613 3594 771060877 771058898 0.000000e+00 3321.0
17 TraesCS3A01G436300 chr2A 94.407 2056 81 12 5488 7540 775778048 775776024 0.000000e+00 3129.0
18 TraesCS3A01G436300 chr2A 95.449 1604 62 9 3599 5197 771051257 771049660 0.000000e+00 2547.0
19 TraesCS3A01G436300 chr2A 97.619 42 1 0 8046 8087 637977462 637977503 1.240000e-08 73.1
20 TraesCS3A01G436300 chr2A 88.679 53 4 1 8036 8086 28133154 28133206 7.450000e-06 63.9
21 TraesCS3A01G436300 chr5A 96.834 1990 54 5 1612 3594 622341613 622343600 0.000000e+00 3317.0
22 TraesCS3A01G436300 chr5A 93.667 2037 111 14 5488 7521 542918749 542920770 0.000000e+00 3031.0
23 TraesCS3A01G436300 chr5A 95.445 1888 77 6 5488 7371 647604531 647606413 0.000000e+00 3001.0
24 TraesCS3A01G436300 chr5A 95.436 1468 54 7 3818 5277 18084143 18085605 0.000000e+00 2327.0
25 TraesCS3A01G436300 chr5A 84.954 545 56 10 1613 2145 647590099 647590629 6.110000e-146 529.0
26 TraesCS3A01G436300 chr5A 95.033 302 12 2 3599 3900 618452148 618451850 1.050000e-128 472.0
27 TraesCS3A01G436300 chr5A 92.500 40 3 0 391 430 663849775 663849736 3.470000e-04 58.4
28 TraesCS3A01G436300 chrUn 96.825 1984 53 4 1613 3594 1260273 1262248 0.000000e+00 3306.0
29 TraesCS3A01G436300 chrUn 92.549 2107 101 28 5488 7563 63541587 63539506 0.000000e+00 2970.0
30 TraesCS3A01G436300 chrUn 95.685 1460 49 9 3822 5277 144988459 144989908 0.000000e+00 2335.0
31 TraesCS3A01G436300 chrUn 95.676 1457 53 5 3825 5277 63543727 63542277 0.000000e+00 2333.0
32 TraesCS3A01G436300 chrUn 95.548 1460 54 5 3822 5277 63427801 63429253 0.000000e+00 2326.0
33 TraesCS3A01G436300 chrUn 95.534 1321 52 4 5488 6807 63429942 63431256 0.000000e+00 2106.0
34 TraesCS3A01G436300 chrUn 91.411 1432 70 26 6158 7560 63469968 63471375 0.000000e+00 1914.0
35 TraesCS3A01G436300 chrUn 91.114 1373 69 26 6217 7560 63431267 63432615 0.000000e+00 1810.0
36 TraesCS3A01G436300 chrUn 95.613 889 38 1 5488 6376 412349214 412350101 0.000000e+00 1424.0
37 TraesCS3A01G436300 chrUn 95.501 889 39 1 5488 6376 412350631 412351518 0.000000e+00 1419.0
38 TraesCS3A01G436300 chrUn 96.250 800 26 2 5488 6287 63475626 63476421 0.000000e+00 1308.0
39 TraesCS3A01G436300 chrUn 95.588 816 34 2 5488 6302 63672295 63673109 0.000000e+00 1306.0
40 TraesCS3A01G436300 chrUn 100.000 29 0 0 3796 3824 176175764 176175736 4.000000e-03 54.7
41 TraesCS3A01G436300 chr4A 96.776 1985 59 3 1612 3594 583588763 583586782 0.000000e+00 3306.0
42 TraesCS3A01G436300 chr4A 94.628 2122 58 16 5488 7560 599788958 599786844 0.000000e+00 3236.0
43 TraesCS3A01G436300 chr4A 93.468 2128 81 17 5488 7561 583576286 583574163 0.000000e+00 3107.0
44 TraesCS3A01G436300 chr4A 95.407 1807 69 8 5488 7286 603292967 603291167 0.000000e+00 2865.0
45 TraesCS3A01G436300 chr4A 95.506 1691 56 11 3599 5277 599789994 599788312 0.000000e+00 2684.0
46 TraesCS3A01G436300 chr4A 93.095 1231 81 3 7561 8790 9680815 9682042 0.000000e+00 1799.0
47 TraesCS3A01G436300 chr4A 88.415 1502 128 23 1 1471 9670064 9671550 0.000000e+00 1768.0
48 TraesCS3A01G436300 chr4A 98.000 200 4 0 3599 3798 593692292 593692093 1.840000e-91 348.0
49 TraesCS3A01G436300 chr4A 97.436 39 1 0 8046 8084 575026716 575026754 5.760000e-07 67.6
50 TraesCS3A01G436300 chr7A 96.677 1986 60 4 1611 3594 731618513 731620494 0.000000e+00 3297.0
51 TraesCS3A01G436300 chr7A 96.472 1984 64 3 1613 3594 28155929 28157908 0.000000e+00 3271.0
52 TraesCS3A01G436300 chr7A 93.699 2095 99 14 5488 7560 11739972 11742055 0.000000e+00 3107.0
53 TraesCS3A01G436300 chr7A 93.327 2113 99 16 5488 7564 71728748 71730854 0.000000e+00 3083.0
54 TraesCS3A01G436300 chr7A 93.196 1264 52 17 6302 7540 726861251 726859997 0.000000e+00 1827.0
55 TraesCS3A01G436300 chr7A 93.112 1263 54 21 6302 7540 54341460 54340207 0.000000e+00 1820.0
56 TraesCS3A01G436300 chr7A 95.896 1072 38 4 5488 6559 17786683 17785618 0.000000e+00 1731.0
57 TraesCS3A01G436300 chr7A 86.083 1085 97 25 6493 7563 19595042 19593998 0.000000e+00 1118.0
58 TraesCS3A01G436300 chr7A 97.436 39 1 0 8046 8084 475966728 475966766 5.760000e-07 67.6
59 TraesCS3A01G436300 chr1A 96.472 1984 64 2 1613 3594 536952389 536950410 0.000000e+00 3271.0
60 TraesCS3A01G436300 chr1A 93.895 2113 86 19 5488 7565 34898549 34896445 0.000000e+00 3147.0
61 TraesCS3A01G436300 chr1A 95.745 1457 49 8 3825 5277 12617238 12615791 0.000000e+00 2335.0
62 TraesCS3A01G436300 chr1A 95.610 1458 53 8 3824 5277 2494351 2492901 0.000000e+00 2327.0
63 TraesCS3A01G436300 chr1A 90.839 1288 78 20 6300 7563 557299418 557298147 0.000000e+00 1688.0
64 TraesCS3A01G436300 chr1A 89.954 1294 71 23 6300 7560 15837743 15839010 0.000000e+00 1615.0
65 TraesCS3A01G436300 chr1A 91.667 1044 46 18 6508 7521 497335304 497336336 0.000000e+00 1408.0
66 TraesCS3A01G436300 chr1A 95.875 800 29 3 5488 6287 553854132 553853337 0.000000e+00 1291.0
67 TraesCS3A01G436300 chr1A 95.755 801 31 2 5488 6287 556715039 556715837 0.000000e+00 1288.0
68 TraesCS3A01G436300 chr1A 95.739 798 30 3 5488 6285 12633258 12632465 0.000000e+00 1282.0
69 TraesCS3A01G436300 chr1A 95.625 800 32 3 5488 6287 2493544 2492748 0.000000e+00 1280.0
70 TraesCS3A01G436300 chr1A 95.625 800 31 3 5488 6287 12617099 12616304 0.000000e+00 1280.0
71 TraesCS3A01G436300 chr1A 95.506 801 34 2 5488 6287 6970603 6971402 0.000000e+00 1279.0
72 TraesCS3A01G436300 chr1A 95.625 800 30 4 5488 6287 12632592 12631798 0.000000e+00 1279.0
73 TraesCS3A01G436300 chr1A 95.500 800 34 1 5488 6287 12603705 12602908 0.000000e+00 1277.0
74 TraesCS3A01G436300 chr1A 87.265 1170 72 38 6403 7560 15843015 15844119 0.000000e+00 1264.0
75 TraesCS3A01G436300 chr1A 90.157 894 26 10 6718 7561 588727088 588727969 0.000000e+00 1107.0
76 TraesCS3A01G436300 chr1A 92.683 451 13 5 7109 7540 527181796 527181347 4.530000e-177 632.0
77 TraesCS3A01G436300 chr1A 91.060 302 25 1 6300 6601 15825765 15826064 2.990000e-109 407.0
78 TraesCS3A01G436300 chr1A 96.450 169 6 0 6300 6468 34900962 34900794 6.800000e-71 279.0
79 TraesCS3A01G436300 chr1A 96.988 166 5 0 6300 6465 497333819 497333984 6.800000e-71 279.0
80 TraesCS3A01G436300 chr1A 96.988 166 5 0 6300 6465 497334492 497334657 6.800000e-71 279.0
81 TraesCS3A01G436300 chr1A 96.386 166 5 1 6300 6465 497333149 497333313 1.140000e-68 272.0
82 TraesCS3A01G436300 chr6A 94.664 2099 62 21 5488 7560 22981732 22979658 0.000000e+00 3210.0
83 TraesCS3A01G436300 chr6A 95.016 1926 77 12 5488 7404 12021194 12019279 0.000000e+00 3007.0
84 TraesCS3A01G436300 chr6A 95.616 1460 51 6 3825 5277 22982536 22981083 0.000000e+00 2329.0
85 TraesCS3A01G436300 chr6A 92.243 1302 47 20 6300 7560 582426432 582425144 0.000000e+00 1796.0
86 TraesCS3A01G436300 chr6A 96.000 800 29 2 5488 6287 22982398 22981602 0.000000e+00 1297.0
87 TraesCS3A01G436300 chr6A 95.750 800 32 2 5488 6287 21629793 21628996 0.000000e+00 1288.0
88 TraesCS3A01G436300 chr6A 95.625 800 34 1 5488 6287 1995569 1994771 0.000000e+00 1282.0
89 TraesCS3A01G436300 chr6A 89.851 1005 66 15 6583 7558 525232287 525231290 0.000000e+00 1258.0
90 TraesCS3A01G436300 chr6A 100.000 37 0 0 8046 8082 465232696 465232732 1.600000e-07 69.4
91 TraesCS3A01G436300 chr3B 90.373 1475 115 14 153 1613 774456063 774457524 0.000000e+00 1912.0
92 TraesCS3A01G436300 chr3B 92.113 710 52 3 8081 8787 774458121 774458829 0.000000e+00 998.0
93 TraesCS3A01G436300 chr3B 94.896 529 25 2 7561 8087 774457521 774458049 0.000000e+00 826.0
94 TraesCS3A01G436300 chr3B 96.094 128 5 0 1 128 774428342 774428469 9.050000e-50 209.0
95 TraesCS3A01G436300 chr3D 92.353 1020 75 3 594 1611 579697337 579698355 0.000000e+00 1448.0
96 TraesCS3A01G436300 chr3D 89.563 1121 76 19 6466 7558 381293898 381292791 0.000000e+00 1384.0
97 TraesCS3A01G436300 chr3D 89.336 1069 85 16 6466 7521 572122975 572121923 0.000000e+00 1315.0
98 TraesCS3A01G436300 chr3D 92.125 800 59 4 5488 6286 45435278 45436074 0.000000e+00 1125.0
99 TraesCS3A01G436300 chr3D 86.444 1018 81 26 6587 7560 595889006 595888002 0.000000e+00 1062.0
100 TraesCS3A01G436300 chr3D 86.902 962 83 16 6592 7522 568115428 568114479 0.000000e+00 1038.0
101 TraesCS3A01G436300 chr3D 88.575 744 57 16 6823 7564 589950368 589949651 0.000000e+00 878.0
102 TraesCS3A01G436300 chr3D 93.585 530 33 1 7561 8089 579698354 579698883 0.000000e+00 789.0
103 TraesCS3A01G436300 chr3D 81.853 1036 91 44 6568 7564 588731145 588730168 0.000000e+00 782.0
104 TraesCS3A01G436300 chr3D 81.339 911 90 26 6587 7452 416559491 416560366 0.000000e+00 667.0
105 TraesCS3A01G436300 chr3D 92.023 351 21 4 6466 6814 604416813 604416468 3.730000e-133 486.0
106 TraesCS3A01G436300 chr3D 90.805 348 19 6 8081 8426 579698974 579699310 3.790000e-123 453.0
107 TraesCS3A01G436300 chr3D 84.472 483 37 16 7097 7560 604416435 604415972 8.190000e-120 442.0
108 TraesCS3A01G436300 chr3D 77.118 791 147 20 850 1609 2991708 2990921 2.290000e-115 427.0
109 TraesCS3A01G436300 chr3D 84.444 405 62 1 7561 7964 2920377 2919973 1.800000e-106 398.0
110 TraesCS3A01G436300 chr3D 80.035 571 75 18 7010 7560 526943582 526944133 3.890000e-103 387.0
111 TraesCS3A01G436300 chr3D 86.728 324 37 4 6466 6787 416528144 416528463 1.100000e-93 355.0
112 TraesCS3A01G436300 chr3D 86.728 324 38 4 6466 6787 418961382 418961062 1.100000e-93 355.0
113 TraesCS3A01G436300 chr3D 77.844 501 83 21 7050 7540 594084175 594084657 1.460000e-72 285.0
114 TraesCS3A01G436300 chr3D 94.737 171 9 0 6300 6470 600901735 600901565 5.290000e-67 267.0
115 TraesCS3A01G436300 chr3D 93.714 175 9 1 6300 6474 588779489 588779661 2.460000e-65 261.0
116 TraesCS3A01G436300 chr2D 90.009 1071 81 14 6466 7521 25875742 25876801 0.000000e+00 1362.0
117 TraesCS3A01G436300 chr2D 96.130 801 30 1 5488 6287 647381651 647382451 0.000000e+00 1306.0
118 TraesCS3A01G436300 chr2D 89.128 1067 78 23 6466 7521 594830409 594831448 0.000000e+00 1293.0
119 TraesCS3A01G436300 chr2D 86.868 1127 74 26 6466 7560 578559695 578560779 0.000000e+00 1194.0
120 TraesCS3A01G436300 chr2D 88.166 1014 71 26 6561 7560 578501171 578502149 0.000000e+00 1162.0
121 TraesCS3A01G436300 chr2D 86.255 1084 103 26 6507 7560 63376163 63375096 0.000000e+00 1134.0
122 TraesCS3A01G436300 chr2D 92.472 797 54 6 5492 6287 599963665 599962874 0.000000e+00 1134.0
123 TraesCS3A01G436300 chr2D 85.738 610 41 24 6544 7124 381692332 381691740 3.550000e-168 603.0
124 TraesCS3A01G436300 chr2D 85.174 317 46 1 7245 7560 43226258 43226574 3.100000e-84 324.0
125 TraesCS3A01G436300 chr2D 94.186 172 10 0 6299 6470 610485579 610485750 6.850000e-66 263.0
126 TraesCS3A01G436300 chr2D 91.892 185 13 2 6300 6483 639437880 639437697 3.190000e-64 257.0
127 TraesCS3A01G436300 chr2D 75.957 470 83 23 7108 7563 107846195 107845742 1.940000e-51 215.0
128 TraesCS3A01G436300 chr2D 90.244 41 4 0 8046 8086 121777019 121777059 4.000000e-03 54.7
129 TraesCS3A01G436300 chr2B 88.528 1107 109 12 337 1436 755344363 755345458 0.000000e+00 1325.0
130 TraesCS3A01G436300 chr2B 97.436 39 1 0 8046 8084 187160280 187160318 5.760000e-07 67.6
131 TraesCS3A01G436300 chr1D 92.759 801 52 6 5488 6287 427804807 427805602 0.000000e+00 1153.0
132 TraesCS3A01G436300 chr1D 92.385 801 56 5 5488 6287 427805472 427806268 0.000000e+00 1136.0
133 TraesCS3A01G436300 chr1D 92.260 801 57 5 5489 6287 433965614 433964817 0.000000e+00 1131.0
134 TraesCS3A01G436300 chr1D 92.125 800 59 4 5489 6287 434001196 434000400 0.000000e+00 1125.0
135 TraesCS3A01G436300 chr1D 92.020 802 60 3 5488 6287 427806138 427806937 0.000000e+00 1123.0
136 TraesCS3A01G436300 chr1D 91.875 800 63 2 5488 6287 289576382 289577179 0.000000e+00 1116.0
137 TraesCS3A01G436300 chr1D 91.875 800 62 3 5488 6287 19921347 19920551 0.000000e+00 1114.0
138 TraesCS3A01G436300 chr1D 91.760 801 61 5 5488 6288 434990625 434991420 0.000000e+00 1109.0
139 TraesCS3A01G436300 chr1D 86.722 482 54 10 6976 7450 26419868 26419390 2.200000e-145 527.0
140 TraesCS3A01G436300 chr1D 85.861 389 41 5 6466 6846 26447798 26447416 1.390000e-107 401.0
141 TraesCS3A01G436300 chr1D 83.896 385 43 11 6526 6901 30980271 30979897 5.110000e-92 350.0
142 TraesCS3A01G436300 chr1D 83.871 372 43 10 6510 6871 12748260 12748624 1.110000e-88 339.0
143 TraesCS3A01G436300 chr1D 94.675 169 9 0 6300 6468 434870149 434869981 6.850000e-66 263.0
144 TraesCS3A01G436300 chr1D 94.675 169 9 0 6300 6468 434897823 434897655 6.850000e-66 263.0
145 TraesCS3A01G436300 chr1D 93.714 175 11 0 6300 6474 434990727 434990553 6.850000e-66 263.0
146 TraesCS3A01G436300 chr1D 93.714 175 10 1 6300 6474 40603006 40602833 2.460000e-65 261.0
147 TraesCS3A01G436300 chr1D 94.152 171 10 0 6300 6470 289576484 289576314 2.460000e-65 261.0
148 TraesCS3A01G436300 chr1D 94.675 169 8 1 6300 6468 434895144 434894977 2.460000e-65 261.0
149 TraesCS3A01G436300 chr1D 94.675 169 8 1 6300 6468 434971752 434971585 2.460000e-65 261.0
150 TraesCS3A01G436300 chr1D 93.714 175 10 1 6300 6474 435026779 435026606 2.460000e-65 261.0
151 TraesCS3A01G436300 chr1D 94.152 171 10 0 6300 6470 469393458 469393288 2.460000e-65 261.0
152 TraesCS3A01G436300 chr1D 80.441 363 52 9 6549 6902 30796593 30796241 8.860000e-65 259.0
153 TraesCS3A01G436300 chr1D 83.408 223 15 8 6700 6912 493023983 493024193 4.240000e-43 187.0
154 TraesCS3A01G436300 chr1D 83.889 180 27 2 6466 6643 46412100 46411921 4.270000e-38 171.0
155 TraesCS3A01G436300 chr1D 83.019 159 17 4 6759 6912 30307445 30307292 1.560000e-27 135.0
156 TraesCS3A01G436300 chr1D 92.553 94 5 2 6810 6902 26447785 26447693 5.600000e-27 134.0
157 TraesCS3A01G436300 chr1D 81.250 176 18 5 6736 6902 460830684 460830515 2.610000e-25 128.0
158 TraesCS3A01G436300 chr1D 88.172 93 4 3 6820 6912 26446932 26446847 4.390000e-18 104.0
159 TraesCS3A01G436300 chr1D 77.005 187 32 9 7359 7537 460917084 460916901 7.350000e-16 97.1
160 TraesCS3A01G436300 chr1D 77.852 149 27 6 7392 7537 30294609 30294754 4.420000e-13 87.9
161 TraesCS3A01G436300 chr1D 79.412 136 19 7 7392 7522 478975775 478975644 4.420000e-13 87.9
162 TraesCS3A01G436300 chr1D 77.551 147 27 6 7392 7535 434785314 434785457 5.720000e-12 84.2
163 TraesCS3A01G436300 chr1D 84.932 73 8 3 7010 7081 468392975 468393045 4.450000e-08 71.3
164 TraesCS3A01G436300 chr1D 84.932 73 6 4 7010 7082 460884210 460884277 1.600000e-07 69.4
165 TraesCS3A01G436300 chr1D 89.796 49 5 0 7034 7082 401360505 401360457 7.450000e-06 63.9
166 TraesCS3A01G436300 chr1D 83.333 72 6 4 7010 7081 13456638 13456573 2.680000e-05 62.1
167 TraesCS3A01G436300 chr1D 97.222 36 1 0 7161 7196 42610723 42610688 2.680000e-05 62.1
168 TraesCS3A01G436300 chr1D 84.375 64 8 2 7019 7081 83912851 83912913 2.680000e-05 62.1
169 TraesCS3A01G436300 chr1D 82.432 74 6 6 7010 7081 34001698 34001766 3.470000e-04 58.4
170 TraesCS3A01G436300 chr1D 94.595 37 2 0 7160 7196 437929135 437929171 3.470000e-04 58.4
171 TraesCS3A01G436300 chr1D 97.059 34 1 0 7163 7196 468124198 468124165 3.470000e-04 58.4
172 TraesCS3A01G436300 chr1D 92.308 39 3 0 7158 7196 8336428 8336466 1.000000e-03 56.5
173 TraesCS3A01G436300 chr1D 92.308 39 3 0 7158 7196 13044415 13044453 1.000000e-03 56.5
174 TraesCS3A01G436300 chr1D 92.308 39 3 0 7158 7196 434500204 434500242 1.000000e-03 56.5
175 TraesCS3A01G436300 chr4B 92.509 801 55 4 5488 6286 624557793 624556996 0.000000e+00 1142.0
176 TraesCS3A01G436300 chr4B 92.509 801 55 4 5488 6286 653606243 653607040 0.000000e+00 1142.0
177 TraesCS3A01G436300 chr4B 92.509 801 55 4 5488 6286 653608250 653609047 0.000000e+00 1142.0
178 TraesCS3A01G436300 chr4B 92.240 799 59 3 5488 6286 624559127 624558332 0.000000e+00 1129.0
179 TraesCS3A01G436300 chr5D 92.260 801 56 5 5488 6287 370866148 370865353 0.000000e+00 1131.0
180 TraesCS3A01G436300 chr5D 89.374 527 28 9 6466 6977 54838402 54837889 9.740000e-179 638.0
181 TraesCS3A01G436300 chr5D 81.331 541 50 17 6789 7287 159299513 159300044 8.370000e-105 392.0
182 TraesCS3A01G436300 chr5D 94.286 175 10 0 6300 6474 121332341 121332167 1.470000e-67 268.0
183 TraesCS3A01G436300 chr5D 94.737 171 8 1 6300 6470 54839023 54838854 1.900000e-66 265.0
184 TraesCS3A01G436300 chr5D 97.297 37 1 0 8048 8084 388875007 388874971 7.450000e-06 63.9
185 TraesCS3A01G436300 chr5D 89.362 47 4 1 8042 8087 231356318 231356364 3.470000e-04 58.4
186 TraesCS3A01G436300 chr6D 92.250 800 57 5 5488 6287 8830581 8829787 0.000000e+00 1129.0
187 TraesCS3A01G436300 chr6D 92.135 801 59 4 5488 6287 8833921 8833124 0.000000e+00 1127.0
188 TraesCS3A01G436300 chr6D 92.000 800 62 2 5488 6287 1277802 1278599 0.000000e+00 1122.0
189 TraesCS3A01G436300 chr6D 92.000 800 62 2 5488 6287 8831915 8831118 0.000000e+00 1122.0
190 TraesCS3A01G436300 chr6D 85.742 1031 69 23 6571 7561 457683049 457684041 0.000000e+00 1018.0
191 TraesCS3A01G436300 chr6D 89.799 598 37 13 6466 7056 17258020 17257440 0.000000e+00 745.0
192 TraesCS3A01G436300 chr6D 94.186 172 9 1 6300 6470 8499845 8499674 2.460000e-65 261.0
193 TraesCS3A01G436300 chr6D 93.143 175 12 0 6300 6474 31970204 31970030 3.190000e-64 257.0
194 TraesCS3A01G436300 chr6D 92.857 154 11 0 7218 7371 17249859 17249706 3.230000e-54 224.0
195 TraesCS3A01G436300 chr6D 82.877 146 22 3 6759 6902 17258059 17257915 2.610000e-25 128.0
196 TraesCS3A01G436300 chr6D 78.523 149 27 5 7394 7539 17249570 17249716 9.510000e-15 93.5
197 TraesCS3A01G436300 chr6D 78.947 133 23 4 7394 7523 2338933 2339063 1.590000e-12 86.1
198 TraesCS3A01G436300 chr6D 85.294 68 8 2 7015 7082 12541076 12541141 1.600000e-07 69.4
199 TraesCS3A01G436300 chr6D 97.222 36 1 0 7161 7196 10031181 10031216 2.680000e-05 62.1
200 TraesCS3A01G436300 chr6D 97.222 36 1 0 7161 7196 24323765 24323800 2.680000e-05 62.1
201 TraesCS3A01G436300 chr6D 90.698 43 4 0 7163 7205 46613304 46613346 3.470000e-04 58.4
202 TraesCS3A01G436300 chr4D 92.125 800 59 4 5488 6287 493313589 493312794 0.000000e+00 1125.0
203 TraesCS3A01G436300 chr4D 92.105 798 60 3 5488 6285 500204151 500204945 0.000000e+00 1122.0
204 TraesCS3A01G436300 chr4D 91.760 801 58 6 5488 6287 493283167 493282374 0.000000e+00 1107.0
205 TraesCS3A01G436300 chr4D 91.625 800 60 6 5488 6287 449863412 449864204 0.000000e+00 1099.0
206 TraesCS3A01G436300 chr4D 91.500 800 61 7 5488 6287 493293431 493292639 0.000000e+00 1094.0
207 TraesCS3A01G436300 chr4D 91.397 802 64 4 5488 6287 505185143 505184345 0.000000e+00 1094.0
208 TraesCS3A01G436300 chr4D 91.386 801 63 5 5488 6287 449862747 449863542 0.000000e+00 1092.0
209 TraesCS3A01G436300 chr4D 91.386 801 64 5 5488 6287 505185809 505185013 0.000000e+00 1092.0
210 TraesCS3A01G436300 chr4D 91.447 795 62 5 5493 6287 291589280 291590068 0.000000e+00 1086.0
211 TraesCS3A01G436300 chr4D 91.261 801 64 6 5488 6287 493282173 493281378 0.000000e+00 1086.0
212 TraesCS3A01G436300 chr4D 90.852 634 34 11 6466 7085 419243451 419244074 0.000000e+00 828.0
213 TraesCS3A01G436300 chr4D 83.175 630 61 24 6919 7522 455292652 455293262 1.310000e-147 534.0
214 TraesCS3A01G436300 chr4D 88.294 299 28 3 7263 7560 419244061 419244353 1.420000e-92 351.0
215 TraesCS3A01G436300 chr4D 85.047 321 41 5 6466 6783 500232111 500231795 4.010000e-83 320.0
216 TraesCS3A01G436300 chr4D 94.578 166 8 1 6300 6465 10891276 10891440 1.150000e-63 255.0
217 TraesCS3A01G436300 chr4D 94.578 166 8 1 6300 6465 482325865 482326029 1.150000e-63 255.0
218 TraesCS3A01G436300 chr4D 94.578 166 8 1 6300 6465 482326525 482326689 1.150000e-63 255.0
219 TraesCS3A01G436300 chr4D 93.567 171 11 0 6300 6470 483422941 483423111 1.150000e-63 255.0
220 TraesCS3A01G436300 chr4D 93.143 175 11 1 6300 6474 500204919 500204746 1.150000e-63 255.0
221 TraesCS3A01G436300 chr4D 93.567 171 10 1 6300 6470 449864176 449864007 4.120000e-63 254.0
222 TraesCS3A01G436300 chr4D 93.976 166 8 2 6300 6465 10892479 10892642 5.330000e-62 250.0
223 TraesCS3A01G436300 chr4D 92.571 175 11 1 6300 6474 454785700 454785528 5.330000e-62 250.0
224 TraesCS3A01G436300 chr4D 93.976 166 9 1 6300 6465 483414644 483414808 5.330000e-62 250.0
225 TraesCS3A01G436300 chr4D 93.976 166 9 1 6300 6465 483415861 483416025 5.330000e-62 250.0
226 TraesCS3A01G436300 chr4D 82.500 200 12 7 6725 6912 499508018 499507830 4.300000e-33 154.0
227 TraesCS3A01G436300 chr4D 82.635 167 21 4 6747 6912 419243400 419243559 3.350000e-29 141.0
228 TraesCS3A01G436300 chr4D 80.240 167 19 4 6736 6894 291591987 291591827 7.300000e-21 113.0
229 TraesCS3A01G436300 chr4D 80.000 135 24 3 7394 7526 419244331 419244198 7.350000e-16 97.1
230 TraesCS3A01G436300 chr4D 77.703 148 27 6 7393 7537 505186829 505186685 1.590000e-12 86.1
231 TraesCS3A01G436300 chr4D 90.323 62 5 1 7393 7453 449861434 449861495 7.400000e-11 80.5
232 TraesCS3A01G436300 chr4D 90.000 60 5 1 7393 7451 482327619 482327560 9.570000e-10 76.8
233 TraesCS3A01G436300 chr4D 88.710 62 6 1 7393 7453 483430292 483430231 3.440000e-09 75.0
234 TraesCS3A01G436300 chr4D 87.302 63 7 1 7392 7453 481908793 481908731 4.450000e-08 71.3
235 TraesCS3A01G436300 chr4D 86.364 66 4 4 7392 7454 500203122 500203185 5.760000e-07 67.6
236 TraesCS3A01G436300 chr4D 94.595 37 2 0 7160 7196 2893212 2893248 3.470000e-04 58.4
237 TraesCS3A01G436300 chr4D 74.667 150 29 9 7392 7537 291587862 291588006 3.470000e-04 58.4
238 TraesCS3A01G436300 chr4D 94.595 37 2 0 7160 7196 486571384 486571420 3.470000e-04 58.4
239 TraesCS3A01G436300 chr4D 94.595 37 2 0 7160 7196 509163641 509163605 3.470000e-04 58.4
240 TraesCS3A01G436300 chr4D 90.698 43 4 0 7155 7197 509164601 509164559 3.470000e-04 58.4
241 TraesCS3A01G436300 chr4D 94.595 37 0 1 7169 7205 2893182 2893148 1.000000e-03 56.5
242 TraesCS3A01G436300 chr4D 100.000 30 0 0 7168 7197 5037963 5037934 1.000000e-03 56.5
243 TraesCS3A01G436300 chr4D 94.444 36 2 0 7050 7085 507486364 507486329 1.000000e-03 56.5
244 TraesCS3A01G436300 chr4D 90.476 42 3 1 7037 7078 5038539 5038499 4.000000e-03 54.7
245 TraesCS3A01G436300 chr4D 92.308 39 1 2 7054 7090 426776214 426776176 4.000000e-03 54.7
246 TraesCS3A01G436300 chr4D 94.286 35 2 0 7163 7197 505166374 505166408 4.000000e-03 54.7
247 TraesCS3A01G436300 chr4D 100.000 28 0 0 7054 7081 356265008 356265035 1.600000e-02 52.8
248 TraesCS3A01G436300 chr4D 100.000 28 0 0 7169 7196 419233456 419233483 1.600000e-02 52.8
249 TraesCS3A01G436300 chr4D 100.000 28 0 0 7169 7196 419234072 419234045 1.600000e-02 52.8
250 TraesCS3A01G436300 chr7B 86.317 1067 93 17 557 1613 7199481 7200504 0.000000e+00 1112.0
251 TraesCS3A01G436300 chr7B 95.279 699 29 1 8199 8893 7203390 7204088 0.000000e+00 1105.0
252 TraesCS3A01G436300 chr7B 94.058 589 34 1 7561 8148 7200501 7201089 0.000000e+00 893.0
253 TraesCS3A01G436300 chr7B 97.191 178 5 0 8080 8257 7201092 7201269 1.450000e-77 302.0
254 TraesCS3A01G436300 chr7D 96.500 200 7 0 3599 3798 18480104 18479905 1.850000e-86 331.0
255 TraesCS3A01G436300 chr7D 93.023 43 2 1 8043 8084 393116359 393116401 2.680000e-05 62.1
256 TraesCS3A01G436300 chr5B 86.598 97 13 0 8797 8893 693677750 693677654 3.400000e-19 108.0
257 TraesCS3A01G436300 chr5B 89.474 57 4 2 8032 8086 689995154 689995098 4.450000e-08 71.3
258 TraesCS3A01G436300 chr5B 93.333 45 2 1 8044 8087 550912981 550913025 2.070000e-06 65.8
259 TraesCS3A01G436300 chr1B 97.059 34 1 0 8081 8114 484200174 484200141 3.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G436300 chr3A 679915260 679924152 8892 False 8017.500000 9745 100.000000 1 8893 2 chr3A.!!$F7 8892
1 TraesCS3A01G436300 chr3A 85017234 85019215 1981 False 3312.000000 3312 96.826000 1612 3594 1 chr3A.!!$F3 1982
2 TraesCS3A01G436300 chr3A 51590638 51592604 1966 True 3254.000000 3254 96.423000 1612 3594 1 chr3A.!!$R2 1982
3 TraesCS3A01G436300 chr3A 11043275 11045359 2084 False 3164.000000 3164 94.171000 5488 7561 1 chr3A.!!$F2 2073
4 TraesCS3A01G436300 chr3A 745499725 745501516 1791 False 2937.000000 2937 96.220000 5488 7284 1 chr3A.!!$F6 1796
5 TraesCS3A01G436300 chr3A 739378960 739381880 2920 True 1828.500000 3221 95.714500 3599 7561 2 chr3A.!!$R3 3962
6 TraesCS3A01G436300 chr3A 714938977 714941368 2391 False 804.250000 1351 92.981250 574 8791 4 chr3A.!!$F8 8217
7 TraesCS3A01G436300 chr3A 714933512 714934107 595 False 689.000000 689 88.079000 1 582 1 chr3A.!!$F5 581
8 TraesCS3A01G436300 chr2A 771058898 771060877 1979 True 3321.000000 3321 96.925000 1613 3594 1 chr2A.!!$R2 1981
9 TraesCS3A01G436300 chr2A 775776024 775778048 2024 True 3129.000000 3129 94.407000 5488 7540 1 chr2A.!!$R3 2052
10 TraesCS3A01G436300 chr2A 771049660 771051257 1597 True 2547.000000 2547 95.449000 3599 5197 1 chr2A.!!$R1 1598
11 TraesCS3A01G436300 chr5A 622341613 622343600 1987 False 3317.000000 3317 96.834000 1612 3594 1 chr5A.!!$F3 1982
12 TraesCS3A01G436300 chr5A 542918749 542920770 2021 False 3031.000000 3031 93.667000 5488 7521 1 chr5A.!!$F2 2033
13 TraesCS3A01G436300 chr5A 647604531 647606413 1882 False 3001.000000 3001 95.445000 5488 7371 1 chr5A.!!$F5 1883
14 TraesCS3A01G436300 chr5A 18084143 18085605 1462 False 2327.000000 2327 95.436000 3818 5277 1 chr5A.!!$F1 1459
15 TraesCS3A01G436300 chr5A 647590099 647590629 530 False 529.000000 529 84.954000 1613 2145 1 chr5A.!!$F4 532
16 TraesCS3A01G436300 chrUn 1260273 1262248 1975 False 3306.000000 3306 96.825000 1613 3594 1 chrUn.!!$F1 1981
17 TraesCS3A01G436300 chrUn 63539506 63543727 4221 True 2651.500000 2970 94.112500 3825 7563 2 chrUn.!!$R2 3738
18 TraesCS3A01G436300 chrUn 144988459 144989908 1449 False 2335.000000 2335 95.685000 3822 5277 1 chrUn.!!$F5 1455
19 TraesCS3A01G436300 chrUn 63427801 63432615 4814 False 2080.666667 2326 94.065333 3822 7560 3 chrUn.!!$F6 3738
20 TraesCS3A01G436300 chrUn 63469968 63471375 1407 False 1914.000000 1914 91.411000 6158 7560 1 chrUn.!!$F2 1402
21 TraesCS3A01G436300 chrUn 412349214 412351518 2304 False 1421.500000 1424 95.557000 5488 6376 2 chrUn.!!$F7 888
22 TraesCS3A01G436300 chrUn 63475626 63476421 795 False 1308.000000 1308 96.250000 5488 6287 1 chrUn.!!$F3 799
23 TraesCS3A01G436300 chrUn 63672295 63673109 814 False 1306.000000 1306 95.588000 5488 6302 1 chrUn.!!$F4 814
24 TraesCS3A01G436300 chr4A 583586782 583588763 1981 True 3306.000000 3306 96.776000 1612 3594 1 chr4A.!!$R2 1982
25 TraesCS3A01G436300 chr4A 583574163 583576286 2123 True 3107.000000 3107 93.468000 5488 7561 1 chr4A.!!$R1 2073
26 TraesCS3A01G436300 chr4A 599786844 599789994 3150 True 2960.000000 3236 95.067000 3599 7560 2 chr4A.!!$R5 3961
27 TraesCS3A01G436300 chr4A 603291167 603292967 1800 True 2865.000000 2865 95.407000 5488 7286 1 chr4A.!!$R4 1798
28 TraesCS3A01G436300 chr4A 9680815 9682042 1227 False 1799.000000 1799 93.095000 7561 8790 1 chr4A.!!$F2 1229
29 TraesCS3A01G436300 chr4A 9670064 9671550 1486 False 1768.000000 1768 88.415000 1 1471 1 chr4A.!!$F1 1470
30 TraesCS3A01G436300 chr7A 731618513 731620494 1981 False 3297.000000 3297 96.677000 1611 3594 1 chr7A.!!$F5 1983
31 TraesCS3A01G436300 chr7A 28155929 28157908 1979 False 3271.000000 3271 96.472000 1613 3594 1 chr7A.!!$F2 1981
32 TraesCS3A01G436300 chr7A 11739972 11742055 2083 False 3107.000000 3107 93.699000 5488 7560 1 chr7A.!!$F1 2072
33 TraesCS3A01G436300 chr7A 71728748 71730854 2106 False 3083.000000 3083 93.327000 5488 7564 1 chr7A.!!$F3 2076
34 TraesCS3A01G436300 chr7A 726859997 726861251 1254 True 1827.000000 1827 93.196000 6302 7540 1 chr7A.!!$R4 1238
35 TraesCS3A01G436300 chr7A 54340207 54341460 1253 True 1820.000000 1820 93.112000 6302 7540 1 chr7A.!!$R3 1238
36 TraesCS3A01G436300 chr7A 17785618 17786683 1065 True 1731.000000 1731 95.896000 5488 6559 1 chr7A.!!$R1 1071
37 TraesCS3A01G436300 chr7A 19593998 19595042 1044 True 1118.000000 1118 86.083000 6493 7563 1 chr7A.!!$R2 1070
38 TraesCS3A01G436300 chr1A 536950410 536952389 1979 True 3271.000000 3271 96.472000 1613 3594 1 chr1A.!!$R3 1981
39 TraesCS3A01G436300 chr1A 12615791 12617238 1447 True 1807.500000 2335 95.685000 3825 6287 2 chr1A.!!$R7 2462
40 TraesCS3A01G436300 chr1A 2492748 2494351 1603 True 1803.500000 2327 95.617500 3824 6287 2 chr1A.!!$R6 2463
41 TraesCS3A01G436300 chr1A 34896445 34900962 4517 True 1713.000000 3147 95.172500 5488 7565 2 chr1A.!!$R9 2077
42 TraesCS3A01G436300 chr1A 557298147 557299418 1271 True 1688.000000 1688 90.839000 6300 7563 1 chr1A.!!$R5 1263
43 TraesCS3A01G436300 chr1A 15837743 15839010 1267 False 1615.000000 1615 89.954000 6300 7560 1 chr1A.!!$F3 1260
44 TraesCS3A01G436300 chr1A 553853337 553854132 795 True 1291.000000 1291 95.875000 5488 6287 1 chr1A.!!$R4 799
45 TraesCS3A01G436300 chr1A 556715039 556715837 798 False 1288.000000 1288 95.755000 5488 6287 1 chr1A.!!$F5 799
46 TraesCS3A01G436300 chr1A 12631798 12633258 1460 True 1280.500000 1282 95.682000 5488 6287 2 chr1A.!!$R8 799
47 TraesCS3A01G436300 chr1A 6970603 6971402 799 False 1279.000000 1279 95.506000 5488 6287 1 chr1A.!!$F1 799
48 TraesCS3A01G436300 chr1A 12602908 12603705 797 True 1277.000000 1277 95.500000 5488 6287 1 chr1A.!!$R1 799
49 TraesCS3A01G436300 chr1A 15843015 15844119 1104 False 1264.000000 1264 87.265000 6403 7560 1 chr1A.!!$F4 1157
50 TraesCS3A01G436300 chr1A 588727088 588727969 881 False 1107.000000 1107 90.157000 6718 7561 1 chr1A.!!$F6 843
51 TraesCS3A01G436300 chr1A 497333149 497336336 3187 False 559.500000 1408 95.507250 6300 7521 4 chr1A.!!$F7 1221
52 TraesCS3A01G436300 chr6A 12019279 12021194 1915 True 3007.000000 3007 95.016000 5488 7404 1 chr6A.!!$R2 1916
53 TraesCS3A01G436300 chr6A 22979658 22982536 2878 True 2278.666667 3210 95.426667 3825 7560 3 chr6A.!!$R6 3735
54 TraesCS3A01G436300 chr6A 582425144 582426432 1288 True 1796.000000 1796 92.243000 6300 7560 1 chr6A.!!$R5 1260
55 TraesCS3A01G436300 chr6A 21628996 21629793 797 True 1288.000000 1288 95.750000 5488 6287 1 chr6A.!!$R3 799
56 TraesCS3A01G436300 chr6A 1994771 1995569 798 True 1282.000000 1282 95.625000 5488 6287 1 chr6A.!!$R1 799
57 TraesCS3A01G436300 chr6A 525231290 525232287 997 True 1258.000000 1258 89.851000 6583 7558 1 chr6A.!!$R4 975
58 TraesCS3A01G436300 chr3B 774456063 774458829 2766 False 1245.333333 1912 92.460667 153 8787 3 chr3B.!!$F2 8634
59 TraesCS3A01G436300 chr3D 381292791 381293898 1107 True 1384.000000 1384 89.563000 6466 7558 1 chr3D.!!$R3 1092
60 TraesCS3A01G436300 chr3D 572121923 572122975 1052 True 1315.000000 1315 89.336000 6466 7521 1 chr3D.!!$R6 1055
61 TraesCS3A01G436300 chr3D 45435278 45436074 796 False 1125.000000 1125 92.125000 5488 6286 1 chr3D.!!$F1 798
62 TraesCS3A01G436300 chr3D 595888002 595889006 1004 True 1062.000000 1062 86.444000 6587 7560 1 chr3D.!!$R9 973
63 TraesCS3A01G436300 chr3D 568114479 568115428 949 True 1038.000000 1038 86.902000 6592 7522 1 chr3D.!!$R5 930
64 TraesCS3A01G436300 chr3D 579697337 579699310 1973 False 896.666667 1448 92.247667 594 8426 3 chr3D.!!$F7 7832
65 TraesCS3A01G436300 chr3D 589949651 589950368 717 True 878.000000 878 88.575000 6823 7564 1 chr3D.!!$R8 741
66 TraesCS3A01G436300 chr3D 588730168 588731145 977 True 782.000000 782 81.853000 6568 7564 1 chr3D.!!$R7 996
67 TraesCS3A01G436300 chr3D 416559491 416560366 875 False 667.000000 667 81.339000 6587 7452 1 chr3D.!!$F3 865
68 TraesCS3A01G436300 chr3D 604415972 604416813 841 True 464.000000 486 88.247500 6466 7560 2 chr3D.!!$R11 1094
69 TraesCS3A01G436300 chr3D 2990921 2991708 787 True 427.000000 427 77.118000 850 1609 1 chr3D.!!$R2 759
70 TraesCS3A01G436300 chr3D 526943582 526944133 551 False 387.000000 387 80.035000 7010 7560 1 chr3D.!!$F4 550
71 TraesCS3A01G436300 chr2D 25875742 25876801 1059 False 1362.000000 1362 90.009000 6466 7521 1 chr2D.!!$F1 1055
72 TraesCS3A01G436300 chr2D 647381651 647382451 800 False 1306.000000 1306 96.130000 5488 6287 1 chr2D.!!$F8 799
73 TraesCS3A01G436300 chr2D 594830409 594831448 1039 False 1293.000000 1293 89.128000 6466 7521 1 chr2D.!!$F6 1055
74 TraesCS3A01G436300 chr2D 578559695 578560779 1084 False 1194.000000 1194 86.868000 6466 7560 1 chr2D.!!$F5 1094
75 TraesCS3A01G436300 chr2D 578501171 578502149 978 False 1162.000000 1162 88.166000 6561 7560 1 chr2D.!!$F4 999
76 TraesCS3A01G436300 chr2D 63375096 63376163 1067 True 1134.000000 1134 86.255000 6507 7560 1 chr2D.!!$R1 1053
77 TraesCS3A01G436300 chr2D 599962874 599963665 791 True 1134.000000 1134 92.472000 5492 6287 1 chr2D.!!$R4 795
78 TraesCS3A01G436300 chr2D 381691740 381692332 592 True 603.000000 603 85.738000 6544 7124 1 chr2D.!!$R3 580
79 TraesCS3A01G436300 chr2B 755344363 755345458 1095 False 1325.000000 1325 88.528000 337 1436 1 chr2B.!!$F2 1099
80 TraesCS3A01G436300 chr1D 427804807 427806937 2130 False 1137.333333 1153 92.388000 5488 6287 3 chr1D.!!$F15 799
81 TraesCS3A01G436300 chr1D 433964817 433965614 797 True 1131.000000 1131 92.260000 5489 6287 1 chr1D.!!$R12 798
82 TraesCS3A01G436300 chr1D 434000400 434001196 796 True 1125.000000 1125 92.125000 5489 6287 1 chr1D.!!$R13 798
83 TraesCS3A01G436300 chr1D 289576382 289577179 797 False 1116.000000 1116 91.875000 5488 6287 1 chr1D.!!$F7 799
84 TraesCS3A01G436300 chr1D 19920551 19921347 796 True 1114.000000 1114 91.875000 5488 6287 1 chr1D.!!$R2 799
85 TraesCS3A01G436300 chr1D 434990625 434991420 795 False 1109.000000 1109 91.760000 5488 6288 1 chr1D.!!$F10 800
86 TraesCS3A01G436300 chr1D 434894977 434897823 2846 True 262.000000 263 94.675000 6300 6468 2 chr1D.!!$R24 168
87 TraesCS3A01G436300 chr1D 26446847 26447798 951 True 213.000000 401 88.862000 6466 6912 3 chr1D.!!$R23 446
88 TraesCS3A01G436300 chr4B 653606243 653609047 2804 False 1142.000000 1142 92.509000 5488 6286 2 chr4B.!!$F1 798
89 TraesCS3A01G436300 chr4B 624556996 624559127 2131 True 1135.500000 1142 92.374500 5488 6286 2 chr4B.!!$R1 798
90 TraesCS3A01G436300 chr5D 370865353 370866148 795 True 1131.000000 1131 92.260000 5488 6287 1 chr5D.!!$R2 799
91 TraesCS3A01G436300 chr5D 54837889 54839023 1134 True 451.500000 638 92.055500 6300 6977 2 chr5D.!!$R4 677
92 TraesCS3A01G436300 chr5D 159299513 159300044 531 False 392.000000 392 81.331000 6789 7287 1 chr5D.!!$F1 498
93 TraesCS3A01G436300 chr6D 8829787 8833921 4134 True 1126.000000 1129 92.128333 5488 6287 3 chr6D.!!$R4 799
94 TraesCS3A01G436300 chr6D 1277802 1278599 797 False 1122.000000 1122 92.000000 5488 6287 1 chr6D.!!$F1 799
95 TraesCS3A01G436300 chr6D 457683049 457684041 992 False 1018.000000 1018 85.742000 6571 7561 1 chr6D.!!$F8 990
96 TraesCS3A01G436300 chr6D 17257440 17258059 619 True 436.500000 745 86.338000 6466 7056 2 chr6D.!!$R5 590
97 TraesCS3A01G436300 chr4D 493312794 493313589 795 True 1125.000000 1125 92.125000 5488 6287 1 chr4D.!!$R12 799
98 TraesCS3A01G436300 chr4D 493281378 493283167 1789 True 1096.500000 1107 91.510500 5488 6287 2 chr4D.!!$R18 799
99 TraesCS3A01G436300 chr4D 493292639 493293431 792 True 1094.000000 1094 91.500000 5488 6287 1 chr4D.!!$R11 799
100 TraesCS3A01G436300 chr4D 505184345 505186829 2484 True 757.366667 1094 86.828667 5488 7537 3 chr4D.!!$R19 2049
101 TraesCS3A01G436300 chr4D 449861434 449864204 2770 False 757.166667 1099 91.111333 5488 7453 3 chr4D.!!$F11 1965
102 TraesCS3A01G436300 chr4D 500203122 500204945 1823 False 594.800000 1122 89.234500 5488 7454 2 chr4D.!!$F14 1966
103 TraesCS3A01G436300 chr4D 291587862 291590068 2206 False 572.200000 1086 83.057000 5493 7537 2 chr4D.!!$F9 2044
104 TraesCS3A01G436300 chr4D 455292652 455293262 610 False 534.000000 534 83.175000 6919 7522 1 chr4D.!!$F4 603
105 TraesCS3A01G436300 chr4D 419243400 419244353 953 False 440.000000 828 87.260333 6466 7560 3 chr4D.!!$F10 1094
106 TraesCS3A01G436300 chr4D 482325865 482326689 824 False 255.000000 255 94.578000 6300 6465 2 chr4D.!!$F12 165
107 TraesCS3A01G436300 chr4D 10891276 10892642 1366 False 252.500000 255 94.277000 6300 6465 2 chr4D.!!$F8 165
108 TraesCS3A01G436300 chr4D 483414644 483416025 1381 False 250.000000 250 93.976000 6300 6465 2 chr4D.!!$F13 165
109 TraesCS3A01G436300 chr7B 7199481 7204088 4607 False 853.000000 1112 93.211250 557 8893 4 chr7B.!!$F1 8336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 994 1.604378 CAGTGGGAAATCCTCGGCT 59.396 57.895 0.00 0.00 36.20 5.52 F
1731 1838 0.526739 CGTCGGCAACATATCCGTCA 60.527 55.000 0.47 0.00 45.44 4.35 F
1818 1931 1.456892 ATCTATGTCGACGGCCCCA 60.457 57.895 11.62 0.00 0.00 4.96 F
3581 3711 1.077787 CAATGCCGCCCAGGACTAA 60.078 57.895 0.00 0.00 45.00 2.24 F
4680 4818 0.041312 CCTTTGACTTTGCACGGACG 60.041 55.000 0.00 0.00 0.00 4.79 F
4779 4917 0.034089 CCCACAACAAGATCCCCTCC 60.034 60.000 0.00 0.00 0.00 4.30 F
4814 4952 0.036294 GTCCGTTTCCTCCTTCCAGG 60.036 60.000 0.00 0.00 36.46 4.45 F
5156 5294 0.247974 CCGCAGAACGTCTACTACCG 60.248 60.000 0.00 0.00 41.42 4.02 F
5248 5386 0.258774 ACCCAACATGTATGAGGGCC 59.741 55.000 19.75 0.00 44.60 5.80 F
5249 5387 0.468029 CCCAACATGTATGAGGGCCC 60.468 60.000 16.46 16.46 38.84 5.80 F
5250 5388 0.819259 CCAACATGTATGAGGGCCCG 60.819 60.000 18.44 0.95 0.00 6.13 F
5253 5391 1.227943 CATGTATGAGGGCCCGGTG 60.228 63.158 18.44 4.92 0.00 4.94 F
7756 29118 1.261619 CAAGGTTGTGTCTGAGAACGC 59.738 52.381 0.00 0.00 0.00 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2711 2839 1.029408 AGTTTGTGGCACAGAACGCA 61.029 50.000 25.49 10.51 42.76 5.24 R
3311 3439 1.668793 CTCACACATGCAGGCGTGA 60.669 57.895 19.78 19.78 36.91 4.35 R
3720 3850 3.022607 ACCGGAGCTTATAACGTATGC 57.977 47.619 9.46 0.00 0.00 3.14 R
4760 4898 0.034089 GGAGGGGATCTTGTTGTGGG 60.034 60.000 0.00 0.00 0.00 4.61 R
5733 11676 1.381165 GGAAGTGTTGTGGCGGTTGT 61.381 55.000 0.00 0.00 0.00 3.32 R
6632 26649 2.757868 CAACAAGGTGAAAAGGTCCACA 59.242 45.455 0.00 0.00 35.13 4.17 R
7307 28617 1.300620 CAGTTTGACGGCGTCAGGA 60.301 57.895 36.94 27.82 43.69 3.86 R
7612 28973 0.179156 CCATGCTTTCGTGGTCATGC 60.179 55.000 0.00 0.00 43.02 4.06 R
7660 29021 2.028476 TCAGTCCGGTACTTTGGTGATG 60.028 50.000 0.00 0.00 35.76 3.07 R
7665 29026 2.161609 GCAATTCAGTCCGGTACTTTGG 59.838 50.000 0.00 0.00 35.76 3.28 R
7756 29118 1.723542 GACCGATTCGCAGCATATCTG 59.276 52.381 0.00 0.00 45.62 2.90 R
7768 29130 2.908626 GACAAACAAATGCGACCGATTC 59.091 45.455 0.00 0.00 0.00 2.52 R
8863 32585 1.513858 AACCTATCCCCGTATTGGCA 58.486 50.000 0.00 0.00 35.87 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 8.531982 CCTCCGTTTCCATCTGATAATTATCTA 58.468 37.037 22.77 13.32 33.88 1.98
140 151 8.857098 ACAATCTCCACGCTAATATAACTTCTA 58.143 33.333 0.00 0.00 0.00 2.10
193 209 7.202223 CCCTTCTGAAAATTATCTGATAGGGGA 60.202 40.741 15.49 0.00 39.17 4.81
194 210 8.389366 CCTTCTGAAAATTATCTGATAGGGGAT 58.611 37.037 0.00 0.00 30.78 3.85
207 223 5.336945 TGATAGGGGATAGTCCAGAATCTG 58.663 45.833 2.68 2.68 38.64 2.90
372 397 3.648067 TCCTTTCATCCTGTCACTCTTGT 59.352 43.478 0.00 0.00 0.00 3.16
383 408 4.129380 TGTCACTCTTGTGGTTGATCTTG 58.871 43.478 0.00 0.00 43.94 3.02
389 416 5.240183 ACTCTTGTGGTTGATCTTGACATTG 59.760 40.000 0.00 0.00 0.00 2.82
520 551 4.398358 TCATCCCGACATATAGATTCGTCC 59.602 45.833 0.00 0.00 0.00 4.79
606 638 2.362397 TCATCCTAGGCGATGAGACAAC 59.638 50.000 2.96 0.00 42.89 3.32
746 814 1.631405 CAATTTTCCACCAGGCCTCA 58.369 50.000 0.00 0.00 33.74 3.86
919 994 1.604378 CAGTGGGAAATCCTCGGCT 59.396 57.895 0.00 0.00 36.20 5.52
951 1026 2.268167 AGGAGCTCCTACGCTACCGT 62.268 60.000 34.40 5.65 46.48 4.83
990 1065 4.514577 CGCCTCGCCTCCGATGTT 62.515 66.667 0.00 0.00 43.47 2.71
1093 1168 1.259609 CACCATGGTTGATGCCTTGT 58.740 50.000 16.84 0.00 33.37 3.16
1242 1317 1.078497 CTACATCTGCAACCCGGCA 60.078 57.895 0.00 0.00 42.53 5.69
1264 1339 4.025858 GCCAGTGGCTCCAGCTCA 62.026 66.667 27.48 0.00 46.69 4.26
1373 1448 0.846693 AGGAGTTGCAGGGTTGTCTT 59.153 50.000 0.00 0.00 0.00 3.01
1423 1513 0.615331 ACAACAGAGATGCATCGGGT 59.385 50.000 20.67 16.36 0.00 5.28
1500 1596 3.394836 GAGCACCCGCCTCTCCTT 61.395 66.667 0.00 0.00 39.83 3.36
1509 1605 1.403814 CGCCTCTCCTTCTACATGGA 58.596 55.000 0.00 0.00 0.00 3.41
1533 1638 4.395959 CCTACATTGGCATGCTTTCAAT 57.604 40.909 18.92 15.47 33.05 2.57
1566 1671 1.464734 TTTTTGACACGGTGGCAGAA 58.535 45.000 17.36 16.25 36.33 3.02
1668 1775 2.545742 CGTCGGCATAGTCATGAATGGA 60.546 50.000 5.80 0.00 33.67 3.41
1673 1780 2.802816 GCATAGTCATGAATGGACGTCC 59.197 50.000 28.17 28.17 40.20 4.79
1731 1838 0.526739 CGTCGGCAACATATCCGTCA 60.527 55.000 0.47 0.00 45.44 4.35
1818 1931 1.456892 ATCTATGTCGACGGCCCCA 60.457 57.895 11.62 0.00 0.00 4.96
1864 1977 4.752879 GGCCGCCGTCAAGTGCTA 62.753 66.667 0.00 0.00 0.00 3.49
1912 2025 3.755628 GTGCCGACGGTCTAGCCA 61.756 66.667 16.73 0.04 36.97 4.75
2394 2510 3.181329 AGTATCATCACCACCAAGACCA 58.819 45.455 0.00 0.00 0.00 4.02
2556 2684 2.683933 ATCGGAGTGGTCGGGCTT 60.684 61.111 0.00 0.00 0.00 4.35
2565 2693 2.637383 GGTCGGGCTTCGTGTCTCT 61.637 63.158 0.60 0.00 40.32 3.10
2912 3040 3.641906 GTGTGTACTCCATGTAGGCCTAT 59.358 47.826 17.38 0.00 37.29 2.57
3106 3234 7.172342 GTGTAGGAGATACTAGGAGTGATCAT 58.828 42.308 0.00 0.00 35.24 2.45
3170 3298 3.311110 ACCACCGCCATGTCGTCT 61.311 61.111 0.00 0.00 0.00 4.18
3580 3710 2.589540 CAATGCCGCCCAGGACTA 59.410 61.111 0.00 0.00 45.00 2.59
3581 3711 1.077787 CAATGCCGCCCAGGACTAA 60.078 57.895 0.00 0.00 45.00 2.24
3594 3724 5.891551 GCCCAGGACTAATCTTTTCCATAAA 59.108 40.000 0.00 0.00 0.00 1.40
3595 3725 6.039829 GCCCAGGACTAATCTTTTCCATAAAG 59.960 42.308 0.00 0.00 0.00 1.85
3596 3726 6.039829 CCCAGGACTAATCTTTTCCATAAAGC 59.960 42.308 0.00 0.00 0.00 3.51
3597 3727 6.830838 CCAGGACTAATCTTTTCCATAAAGCT 59.169 38.462 0.00 0.00 0.00 3.74
3813 3943 2.479049 GCTCGGTATTAGACGTTCTGCA 60.479 50.000 0.00 0.00 0.00 4.41
3981 4114 1.084289 GCCTAACCCTGTAGCGTTTG 58.916 55.000 0.00 0.00 0.00 2.93
3986 4119 0.690762 ACCCTGTAGCGTTTGACCAT 59.309 50.000 0.00 0.00 0.00 3.55
3995 4128 2.439507 AGCGTTTGACCATGGGATCTAT 59.560 45.455 18.09 0.00 0.00 1.98
4077 4210 2.642311 TCAGCCCATAGGAACACTTTGA 59.358 45.455 0.00 0.00 33.47 2.69
4247 4383 4.379243 ACTTGTGAGAGGCCGCCG 62.379 66.667 1.49 0.00 0.00 6.46
4497 4633 1.669779 GTCTACTACCGTGTCATCGCT 59.330 52.381 0.00 0.00 0.00 4.93
4636 4774 4.157120 CCGTCCCGCCTAACCCTG 62.157 72.222 0.00 0.00 0.00 4.45
4637 4775 3.387947 CGTCCCGCCTAACCCTGT 61.388 66.667 0.00 0.00 0.00 4.00
4638 4776 2.053865 CGTCCCGCCTAACCCTGTA 61.054 63.158 0.00 0.00 0.00 2.74
4639 4777 1.821258 GTCCCGCCTAACCCTGTAG 59.179 63.158 0.00 0.00 0.00 2.74
4640 4778 2.062177 TCCCGCCTAACCCTGTAGC 61.062 63.158 0.00 0.00 0.00 3.58
4641 4779 2.106332 CCGCCTAACCCTGTAGCG 59.894 66.667 0.00 0.00 0.00 4.26
4642 4780 2.718073 CCGCCTAACCCTGTAGCGT 61.718 63.158 0.00 0.00 0.00 5.07
4643 4781 1.217244 CGCCTAACCCTGTAGCGTT 59.783 57.895 0.00 0.00 0.00 4.84
4644 4782 0.390735 CGCCTAACCCTGTAGCGTTT 60.391 55.000 0.00 0.00 0.00 3.60
4645 4783 1.084289 GCCTAACCCTGTAGCGTTTG 58.916 55.000 0.00 0.00 0.00 2.93
4646 4784 1.338389 GCCTAACCCTGTAGCGTTTGA 60.338 52.381 0.00 0.00 0.00 2.69
4647 4785 2.344025 CCTAACCCTGTAGCGTTTGAC 58.656 52.381 0.00 0.00 0.00 3.18
4648 4786 2.344025 CTAACCCTGTAGCGTTTGACC 58.656 52.381 0.00 0.00 0.00 4.02
4649 4787 0.470766 AACCCTGTAGCGTTTGACCA 59.529 50.000 0.00 0.00 0.00 4.02
4650 4788 0.250166 ACCCTGTAGCGTTTGACCAC 60.250 55.000 0.00 0.00 0.00 4.16
4651 4789 1.289109 CCCTGTAGCGTTTGACCACG 61.289 60.000 0.00 0.00 43.36 4.94
4652 4790 1.289109 CCTGTAGCGTTTGACCACGG 61.289 60.000 0.00 0.00 40.69 4.94
4653 4791 1.289109 CTGTAGCGTTTGACCACGGG 61.289 60.000 0.00 0.00 40.69 5.28
4654 4792 1.005867 GTAGCGTTTGACCACGGGA 60.006 57.895 0.00 0.00 40.69 5.14
4655 4793 0.390735 GTAGCGTTTGACCACGGGAT 60.391 55.000 0.00 0.00 40.69 3.85
4656 4794 0.108520 TAGCGTTTGACCACGGGATC 60.109 55.000 0.00 0.00 40.69 3.36
4657 4795 1.375523 GCGTTTGACCACGGGATCT 60.376 57.895 0.00 0.00 40.69 2.75
4658 4796 0.108520 GCGTTTGACCACGGGATCTA 60.109 55.000 0.00 0.00 40.69 1.98
4659 4797 1.922570 CGTTTGACCACGGGATCTAG 58.077 55.000 0.00 0.00 36.47 2.43
4660 4798 1.653151 GTTTGACCACGGGATCTAGC 58.347 55.000 0.00 0.00 0.00 3.42
4661 4799 0.539986 TTTGACCACGGGATCTAGCC 59.460 55.000 0.00 0.00 0.00 3.93
4662 4800 1.335132 TTGACCACGGGATCTAGCCC 61.335 60.000 0.00 0.00 45.10 5.19
4663 4801 1.457831 GACCACGGGATCTAGCCCT 60.458 63.158 1.15 0.00 46.44 5.19
4664 4802 1.003051 ACCACGGGATCTAGCCCTT 59.997 57.895 1.15 0.00 46.44 3.95
4665 4803 0.620700 ACCACGGGATCTAGCCCTTT 60.621 55.000 1.15 0.00 46.44 3.11
4666 4804 0.179045 CCACGGGATCTAGCCCTTTG 60.179 60.000 1.15 0.00 46.44 2.77
4667 4805 0.830648 CACGGGATCTAGCCCTTTGA 59.169 55.000 1.15 0.00 46.44 2.69
4668 4806 0.831307 ACGGGATCTAGCCCTTTGAC 59.169 55.000 1.15 0.00 46.44 3.18
4669 4807 1.123928 CGGGATCTAGCCCTTTGACT 58.876 55.000 1.15 0.00 46.44 3.41
4670 4808 1.486726 CGGGATCTAGCCCTTTGACTT 59.513 52.381 1.15 0.00 46.44 3.01
4671 4809 2.092914 CGGGATCTAGCCCTTTGACTTT 60.093 50.000 1.15 0.00 46.44 2.66
4672 4810 3.282885 GGGATCTAGCCCTTTGACTTTG 58.717 50.000 0.00 0.00 45.12 2.77
4673 4811 2.685388 GGATCTAGCCCTTTGACTTTGC 59.315 50.000 0.00 0.00 0.00 3.68
4674 4812 2.949177 TCTAGCCCTTTGACTTTGCA 57.051 45.000 0.00 0.00 0.00 4.08
4675 4813 2.504367 TCTAGCCCTTTGACTTTGCAC 58.496 47.619 0.00 0.00 0.00 4.57
4676 4814 1.197721 CTAGCCCTTTGACTTTGCACG 59.802 52.381 0.00 0.00 0.00 5.34
4677 4815 1.007387 GCCCTTTGACTTTGCACGG 60.007 57.895 0.00 0.00 0.00 4.94
4678 4816 1.452145 GCCCTTTGACTTTGCACGGA 61.452 55.000 0.00 0.00 0.00 4.69
4679 4817 0.310854 CCCTTTGACTTTGCACGGAC 59.689 55.000 0.00 0.00 0.00 4.79
4680 4818 0.041312 CCTTTGACTTTGCACGGACG 60.041 55.000 0.00 0.00 0.00 4.79
4681 4819 0.041312 CTTTGACTTTGCACGGACGG 60.041 55.000 0.00 0.00 0.00 4.79
4682 4820 1.440938 TTTGACTTTGCACGGACGGG 61.441 55.000 0.00 0.00 0.00 5.28
4683 4821 3.723348 GACTTTGCACGGACGGGC 61.723 66.667 12.67 12.67 46.35 6.13
4684 4822 4.250305 ACTTTGCACGGACGGGCT 62.250 61.111 20.28 0.00 46.30 5.19
4685 4823 2.978010 CTTTGCACGGACGGGCTT 60.978 61.111 20.28 0.00 46.30 4.35
4686 4824 2.517402 TTTGCACGGACGGGCTTT 60.517 55.556 20.28 0.00 46.30 3.51
4687 4825 2.731587 CTTTGCACGGACGGGCTTTG 62.732 60.000 20.28 5.95 46.30 2.77
4688 4826 3.758973 TTGCACGGACGGGCTTTGA 62.759 57.895 20.28 0.00 46.30 2.69
4689 4827 3.723348 GCACGGACGGGCTTTGAC 61.723 66.667 12.27 0.00 42.14 3.18
4690 4828 3.047877 CACGGACGGGCTTTGACC 61.048 66.667 0.00 0.00 0.00 4.02
4691 4829 3.552384 ACGGACGGGCTTTGACCA 61.552 61.111 0.00 0.00 0.00 4.02
4692 4830 2.742372 CGGACGGGCTTTGACCAG 60.742 66.667 0.00 0.00 0.00 4.00
4693 4831 2.430367 GGACGGGCTTTGACCAGT 59.570 61.111 0.00 0.00 41.12 4.00
4694 4832 1.966451 GGACGGGCTTTGACCAGTG 60.966 63.158 0.00 0.00 38.31 3.66
4695 4833 1.966451 GACGGGCTTTGACCAGTGG 60.966 63.158 7.91 7.91 38.31 4.00
4696 4834 2.391724 GACGGGCTTTGACCAGTGGA 62.392 60.000 18.40 0.00 38.31 4.02
4697 4835 1.966451 CGGGCTTTGACCAGTGGAC 60.966 63.158 18.40 11.02 0.00 4.02
4698 4836 1.603739 GGGCTTTGACCAGTGGACC 60.604 63.158 18.40 7.79 0.00 4.46
4699 4837 1.966451 GGCTTTGACCAGTGGACCG 60.966 63.158 18.40 2.27 0.00 4.79
4700 4838 2.617274 GCTTTGACCAGTGGACCGC 61.617 63.158 18.40 8.92 0.00 5.68
4701 4839 1.966451 CTTTGACCAGTGGACCGCC 60.966 63.158 18.40 0.00 0.00 6.13
4702 4840 3.485346 TTTGACCAGTGGACCGCCC 62.485 63.158 18.40 0.00 0.00 6.13
4716 4854 4.906537 GCCCCACCCGGTTGTGTT 62.907 66.667 9.60 0.00 34.35 3.32
4717 4855 2.837624 CCCCACCCGGTTGTGTTA 59.162 61.111 9.60 0.00 34.35 2.41
4718 4856 1.302993 CCCCACCCGGTTGTGTTAG 60.303 63.158 9.60 0.00 34.35 2.34
4719 4857 1.302993 CCCACCCGGTTGTGTTAGG 60.303 63.158 9.60 1.19 34.35 2.69
4720 4858 1.452801 CCACCCGGTTGTGTTAGGT 59.547 57.895 9.60 0.00 34.35 3.08
4721 4859 0.604511 CCACCCGGTTGTGTTAGGTC 60.605 60.000 9.60 0.00 34.35 3.85
4722 4860 0.107081 CACCCGGTTGTGTTAGGTCA 59.893 55.000 0.00 0.00 0.00 4.02
4723 4861 0.395312 ACCCGGTTGTGTTAGGTCAG 59.605 55.000 0.00 0.00 0.00 3.51
4724 4862 0.953960 CCCGGTTGTGTTAGGTCAGC 60.954 60.000 0.00 0.00 0.00 4.26
4725 4863 0.953960 CCGGTTGTGTTAGGTCAGCC 60.954 60.000 0.00 0.00 0.00 4.85
4726 4864 0.953960 CGGTTGTGTTAGGTCAGCCC 60.954 60.000 0.00 0.00 32.60 5.19
4727 4865 0.109723 GGTTGTGTTAGGTCAGCCCA 59.890 55.000 0.00 0.00 34.66 5.36
4728 4866 1.271926 GGTTGTGTTAGGTCAGCCCAT 60.272 52.381 0.00 0.00 34.66 4.00
4729 4867 2.026636 GGTTGTGTTAGGTCAGCCCATA 60.027 50.000 0.00 0.00 34.66 2.74
4730 4868 3.270877 GTTGTGTTAGGTCAGCCCATAG 58.729 50.000 0.00 0.00 34.66 2.23
4731 4869 1.837439 TGTGTTAGGTCAGCCCATAGG 59.163 52.381 0.00 0.00 34.66 2.57
4732 4870 2.116238 GTGTTAGGTCAGCCCATAGGA 58.884 52.381 0.00 0.00 34.66 2.94
4733 4871 2.504175 GTGTTAGGTCAGCCCATAGGAA 59.496 50.000 0.00 0.00 34.66 3.36
4734 4872 2.504175 TGTTAGGTCAGCCCATAGGAAC 59.496 50.000 0.00 0.00 34.66 3.62
4735 4873 2.504175 GTTAGGTCAGCCCATAGGAACA 59.496 50.000 0.00 0.00 34.66 3.18
4736 4874 0.912486 AGGTCAGCCCATAGGAACAC 59.088 55.000 0.00 0.00 34.66 3.32
4737 4875 0.912486 GGTCAGCCCATAGGAACACT 59.088 55.000 0.00 0.00 33.47 3.55
4738 4876 1.282157 GGTCAGCCCATAGGAACACTT 59.718 52.381 0.00 0.00 33.47 3.16
4739 4877 2.290960 GGTCAGCCCATAGGAACACTTT 60.291 50.000 0.00 0.00 33.47 2.66
4740 4878 2.749621 GTCAGCCCATAGGAACACTTTG 59.250 50.000 0.00 0.00 33.47 2.77
4741 4879 2.094675 CAGCCCATAGGAACACTTTGG 58.905 52.381 0.00 0.00 44.97 3.28
4747 4885 4.425577 CATAGGAACACTTTGGAGCAAC 57.574 45.455 0.00 0.00 0.00 4.17
4748 4886 2.435372 AGGAACACTTTGGAGCAACA 57.565 45.000 0.00 0.00 0.00 3.33
4749 4887 2.949447 AGGAACACTTTGGAGCAACAT 58.051 42.857 0.00 0.00 0.00 2.71
4750 4888 2.887152 AGGAACACTTTGGAGCAACATC 59.113 45.455 0.00 0.00 0.00 3.06
4751 4889 2.029918 GGAACACTTTGGAGCAACATCC 60.030 50.000 0.00 0.00 40.03 3.51
4752 4890 1.238439 ACACTTTGGAGCAACATCCG 58.762 50.000 0.00 0.00 42.77 4.18
4753 4891 0.523072 CACTTTGGAGCAACATCCGG 59.477 55.000 0.00 0.00 42.77 5.14
4754 4892 0.609131 ACTTTGGAGCAACATCCGGG 60.609 55.000 0.00 0.00 42.77 5.73
4755 4893 1.937546 CTTTGGAGCAACATCCGGGC 61.938 60.000 0.00 0.00 42.77 6.13
4756 4894 3.936772 TTGGAGCAACATCCGGGCC 62.937 63.158 0.00 0.00 42.77 5.80
4757 4895 4.424711 GGAGCAACATCCGGGCCA 62.425 66.667 4.39 0.00 0.00 5.36
4758 4896 2.825836 GAGCAACATCCGGGCCAG 60.826 66.667 4.39 0.00 0.00 4.85
4759 4897 3.329542 GAGCAACATCCGGGCCAGA 62.330 63.158 4.39 0.00 0.00 3.86
4760 4898 3.134127 GCAACATCCGGGCCAGAC 61.134 66.667 4.39 0.00 0.00 3.51
4761 4899 2.438434 CAACATCCGGGCCAGACC 60.438 66.667 4.39 0.00 37.93 3.85
4770 4908 3.763671 GGCCAGACCCACAACAAG 58.236 61.111 0.00 0.00 0.00 3.16
4771 4909 1.150536 GGCCAGACCCACAACAAGA 59.849 57.895 0.00 0.00 0.00 3.02
4772 4910 0.251341 GGCCAGACCCACAACAAGAT 60.251 55.000 0.00 0.00 0.00 2.40
4773 4911 1.168714 GCCAGACCCACAACAAGATC 58.831 55.000 0.00 0.00 0.00 2.75
4774 4912 1.826385 CCAGACCCACAACAAGATCC 58.174 55.000 0.00 0.00 0.00 3.36
4775 4913 1.614317 CCAGACCCACAACAAGATCCC 60.614 57.143 0.00 0.00 0.00 3.85
4776 4914 0.698818 AGACCCACAACAAGATCCCC 59.301 55.000 0.00 0.00 0.00 4.81
4777 4915 0.698818 GACCCACAACAAGATCCCCT 59.301 55.000 0.00 0.00 0.00 4.79
4778 4916 0.698818 ACCCACAACAAGATCCCCTC 59.301 55.000 0.00 0.00 0.00 4.30
4779 4917 0.034089 CCCACAACAAGATCCCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
4780 4918 0.392998 CCACAACAAGATCCCCTCCG 60.393 60.000 0.00 0.00 0.00 4.63
4781 4919 0.324943 CACAACAAGATCCCCTCCGT 59.675 55.000 0.00 0.00 0.00 4.69
4782 4920 0.324943 ACAACAAGATCCCCTCCGTG 59.675 55.000 0.00 0.00 0.00 4.94
4783 4921 0.324943 CAACAAGATCCCCTCCGTGT 59.675 55.000 0.00 0.00 0.00 4.49
4784 4922 1.553248 CAACAAGATCCCCTCCGTGTA 59.447 52.381 0.00 0.00 0.00 2.90
4785 4923 1.486211 ACAAGATCCCCTCCGTGTAG 58.514 55.000 0.00 0.00 0.00 2.74
4786 4924 1.006758 ACAAGATCCCCTCCGTGTAGA 59.993 52.381 0.00 0.00 0.00 2.59
4787 4925 1.409427 CAAGATCCCCTCCGTGTAGAC 59.591 57.143 0.00 0.00 0.00 2.59
4788 4926 0.106116 AGATCCCCTCCGTGTAGACC 60.106 60.000 0.00 0.00 0.00 3.85
4789 4927 1.075450 ATCCCCTCCGTGTAGACCC 60.075 63.158 0.00 0.00 0.00 4.46
4790 4928 2.600735 ATCCCCTCCGTGTAGACCCC 62.601 65.000 0.00 0.00 0.00 4.95
4791 4929 2.038329 CCCTCCGTGTAGACCCCA 59.962 66.667 0.00 0.00 0.00 4.96
4792 4930 2.356780 CCCTCCGTGTAGACCCCAC 61.357 68.421 0.00 0.00 0.00 4.61
4797 4935 2.126189 GTGTAGACCCCACGCGTC 60.126 66.667 9.86 0.00 0.00 5.19
4798 4936 3.376078 TGTAGACCCCACGCGTCC 61.376 66.667 9.86 0.00 0.00 4.79
4799 4937 4.487412 GTAGACCCCACGCGTCCG 62.487 72.222 9.86 1.40 41.14 4.79
4809 4947 2.048503 CGCGTCCGTTTCCTCCTT 60.049 61.111 0.00 0.00 0.00 3.36
4810 4948 2.092882 CGCGTCCGTTTCCTCCTTC 61.093 63.158 0.00 0.00 0.00 3.46
4811 4949 1.740664 GCGTCCGTTTCCTCCTTCC 60.741 63.158 0.00 0.00 0.00 3.46
4812 4950 1.669440 CGTCCGTTTCCTCCTTCCA 59.331 57.895 0.00 0.00 0.00 3.53
4813 4951 0.389948 CGTCCGTTTCCTCCTTCCAG 60.390 60.000 0.00 0.00 0.00 3.86
4814 4952 0.036294 GTCCGTTTCCTCCTTCCAGG 60.036 60.000 0.00 0.00 36.46 4.45
4815 4953 0.473117 TCCGTTTCCTCCTTCCAGGT 60.473 55.000 0.00 0.00 36.53 4.00
4816 4954 0.321653 CCGTTTCCTCCTTCCAGGTG 60.322 60.000 0.00 0.00 36.53 4.00
4817 4955 0.955919 CGTTTCCTCCTTCCAGGTGC 60.956 60.000 0.00 0.00 36.53 5.01
4818 4956 0.609406 GTTTCCTCCTTCCAGGTGCC 60.609 60.000 0.00 0.00 36.53 5.01
4819 4957 2.124507 TTTCCTCCTTCCAGGTGCCG 62.125 60.000 0.00 0.00 36.53 5.69
4820 4958 4.101448 CCTCCTTCCAGGTGCCGG 62.101 72.222 0.00 0.00 36.53 6.13
4821 4959 4.785453 CTCCTTCCAGGTGCCGGC 62.785 72.222 22.73 22.73 36.53 6.13
4877 5015 3.722295 CGTGTCGGGCGTTTGCAT 61.722 61.111 0.00 0.00 45.35 3.96
4878 5016 2.175811 GTGTCGGGCGTTTGCATC 59.824 61.111 0.00 0.00 45.35 3.91
4879 5017 3.053291 TGTCGGGCGTTTGCATCC 61.053 61.111 0.00 0.00 45.35 3.51
4880 5018 4.160635 GTCGGGCGTTTGCATCCG 62.161 66.667 0.00 0.00 44.32 4.18
4885 5023 4.036804 GCGTTTGCATCCGCCACA 62.037 61.111 16.98 0.00 43.96 4.17
4886 5024 2.642129 CGTTTGCATCCGCCACAA 59.358 55.556 0.00 0.00 37.32 3.33
4887 5025 1.729131 CGTTTGCATCCGCCACAAC 60.729 57.895 0.00 0.00 37.32 3.32
4888 5026 1.361993 GTTTGCATCCGCCACAACA 59.638 52.632 0.00 0.00 37.32 3.33
4889 5027 0.939106 GTTTGCATCCGCCACAACAC 60.939 55.000 0.00 0.00 37.32 3.32
4890 5028 1.106351 TTTGCATCCGCCACAACACT 61.106 50.000 0.00 0.00 37.32 3.55
4891 5029 1.106351 TTGCATCCGCCACAACACTT 61.106 50.000 0.00 0.00 37.32 3.16
4892 5030 1.210155 GCATCCGCCACAACACTTC 59.790 57.895 0.00 0.00 0.00 3.01
4893 5031 1.875963 CATCCGCCACAACACTTCC 59.124 57.895 0.00 0.00 0.00 3.46
4894 5032 0.888736 CATCCGCCACAACACTTCCA 60.889 55.000 0.00 0.00 0.00 3.53
4895 5033 0.606401 ATCCGCCACAACACTTCCAG 60.606 55.000 0.00 0.00 0.00 3.86
4896 5034 1.227823 CCGCCACAACACTTCCAGA 60.228 57.895 0.00 0.00 0.00 3.86
4897 5035 1.507141 CCGCCACAACACTTCCAGAC 61.507 60.000 0.00 0.00 0.00 3.51
4898 5036 0.532862 CGCCACAACACTTCCAGACT 60.533 55.000 0.00 0.00 0.00 3.24
4899 5037 1.680338 GCCACAACACTTCCAGACTT 58.320 50.000 0.00 0.00 0.00 3.01
4900 5038 1.334869 GCCACAACACTTCCAGACTTG 59.665 52.381 0.00 0.00 0.00 3.16
4901 5039 2.643551 CCACAACACTTCCAGACTTGT 58.356 47.619 0.00 0.00 0.00 3.16
4902 5040 2.355756 CCACAACACTTCCAGACTTGTG 59.644 50.000 0.00 0.00 40.84 3.33
4903 5041 3.270027 CACAACACTTCCAGACTTGTGA 58.730 45.455 3.27 0.00 42.82 3.58
4904 5042 3.310774 CACAACACTTCCAGACTTGTGAG 59.689 47.826 3.27 0.00 42.82 3.51
4905 5043 3.197766 ACAACACTTCCAGACTTGTGAGA 59.802 43.478 0.00 0.00 34.81 3.27
4906 5044 3.742433 ACACTTCCAGACTTGTGAGAG 57.258 47.619 0.00 0.00 34.81 3.20
4907 5045 2.366916 ACACTTCCAGACTTGTGAGAGG 59.633 50.000 0.00 0.00 34.81 3.69
4908 5046 1.346068 ACTTCCAGACTTGTGAGAGGC 59.654 52.381 0.00 0.00 0.00 4.70
4909 5047 0.687354 TTCCAGACTTGTGAGAGGCC 59.313 55.000 0.00 0.00 0.00 5.19
4910 5048 1.079543 CCAGACTTGTGAGAGGCCG 60.080 63.158 0.00 0.00 0.00 6.13
4911 5049 1.739562 CAGACTTGTGAGAGGCCGC 60.740 63.158 0.00 0.00 0.00 6.53
4912 5050 2.435059 GACTTGTGAGAGGCCGCC 60.435 66.667 1.49 0.00 0.00 6.13
4913 5051 4.379243 ACTTGTGAGAGGCCGCCG 62.379 66.667 1.49 0.00 0.00 6.46
4925 5063 4.834892 CCGCCGGCGCAAGATTTG 62.835 66.667 42.39 22.74 43.02 2.32
4926 5064 4.834892 CGCCGGCGCAAGATTTGG 62.835 66.667 38.48 5.99 43.02 3.28
4933 5071 4.097828 GCAAGATTTGGCGGCATG 57.902 55.556 14.32 9.03 0.00 4.06
4934 5072 2.169146 GCAAGATTTGGCGGCATGC 61.169 57.895 14.32 16.00 45.38 4.06
4935 5073 1.514087 CAAGATTTGGCGGCATGCT 59.486 52.632 18.92 7.76 45.43 3.79
4936 5074 0.740149 CAAGATTTGGCGGCATGCTA 59.260 50.000 18.92 0.00 45.43 3.49
4937 5075 1.027357 AAGATTTGGCGGCATGCTAG 58.973 50.000 18.92 13.22 45.43 3.42
4938 5076 1.008079 GATTTGGCGGCATGCTAGC 60.008 57.895 23.76 23.76 45.43 3.42
4946 5084 4.632974 GCATGCTAGCCCCCGGAG 62.633 72.222 13.29 0.00 0.00 4.63
4967 5105 3.755628 GCCGGCCACAGTCGTAGA 61.756 66.667 18.11 0.00 40.30 2.59
4978 5116 4.170062 TCGTAGACGCGCGAAGGG 62.170 66.667 39.36 20.33 46.11 3.95
4989 5127 2.202824 CGAAGGGCAATCCGCGTA 60.203 61.111 4.92 0.00 43.84 4.42
4990 5128 1.812093 CGAAGGGCAATCCGCGTAA 60.812 57.895 4.92 0.00 43.84 3.18
4991 5129 1.363145 CGAAGGGCAATCCGCGTAAA 61.363 55.000 4.92 0.00 43.84 2.01
4992 5130 0.377203 GAAGGGCAATCCGCGTAAAG 59.623 55.000 4.92 0.00 43.84 1.85
4993 5131 1.029947 AAGGGCAATCCGCGTAAAGG 61.030 55.000 4.92 0.00 43.84 3.11
4994 5132 2.478033 GGGCAATCCGCGTAAAGGG 61.478 63.158 4.92 0.00 43.84 3.95
4995 5133 1.450669 GGCAATCCGCGTAAAGGGA 60.451 57.895 4.92 0.00 43.84 4.20
4996 5134 1.027792 GGCAATCCGCGTAAAGGGAA 61.028 55.000 4.92 0.00 43.84 3.97
4997 5135 1.021968 GCAATCCGCGTAAAGGGAAT 58.978 50.000 4.92 0.00 35.60 3.01
4998 5136 1.404035 GCAATCCGCGTAAAGGGAATT 59.596 47.619 4.92 0.00 35.60 2.17
4999 5137 2.159296 GCAATCCGCGTAAAGGGAATTT 60.159 45.455 4.92 0.00 35.60 1.82
5000 5138 3.674955 GCAATCCGCGTAAAGGGAATTTT 60.675 43.478 4.92 0.00 35.60 1.82
5001 5139 4.490743 CAATCCGCGTAAAGGGAATTTTT 58.509 39.130 4.92 0.00 35.60 1.94
5002 5140 3.835378 TCCGCGTAAAGGGAATTTTTC 57.165 42.857 4.92 0.00 34.27 2.29
5003 5141 2.160022 TCCGCGTAAAGGGAATTTTTCG 59.840 45.455 4.92 0.00 33.35 3.46
5004 5142 2.511879 CGCGTAAAGGGAATTTTTCGG 58.488 47.619 0.00 0.00 31.95 4.30
5005 5143 2.160022 CGCGTAAAGGGAATTTTTCGGA 59.840 45.455 0.00 0.00 31.95 4.55
5006 5144 3.181504 CGCGTAAAGGGAATTTTTCGGAT 60.182 43.478 0.00 0.00 31.95 4.18
5007 5145 4.034279 CGCGTAAAGGGAATTTTTCGGATA 59.966 41.667 0.00 0.00 31.95 2.59
5008 5146 5.268544 GCGTAAAGGGAATTTTTCGGATAC 58.731 41.667 1.04 0.00 31.95 2.24
5009 5147 5.065602 GCGTAAAGGGAATTTTTCGGATACT 59.934 40.000 1.04 0.00 31.95 2.12
5010 5148 6.403964 GCGTAAAGGGAATTTTTCGGATACTT 60.404 38.462 1.04 0.00 31.95 2.24
5011 5149 7.184779 CGTAAAGGGAATTTTTCGGATACTTC 58.815 38.462 0.00 0.00 32.01 3.01
5012 5150 7.065443 CGTAAAGGGAATTTTTCGGATACTTCT 59.935 37.037 0.00 0.00 32.01 2.85
5013 5151 7.392494 AAAGGGAATTTTTCGGATACTTCTC 57.608 36.000 0.00 0.00 0.00 2.87
5014 5152 5.437946 AGGGAATTTTTCGGATACTTCTCC 58.562 41.667 0.00 0.00 0.00 3.71
5015 5153 5.045140 AGGGAATTTTTCGGATACTTCTCCA 60.045 40.000 0.00 0.00 34.78 3.86
5016 5154 5.828328 GGGAATTTTTCGGATACTTCTCCAT 59.172 40.000 0.00 0.00 34.78 3.41
5017 5155 6.017026 GGGAATTTTTCGGATACTTCTCCATC 60.017 42.308 0.00 0.00 34.78 3.51
5018 5156 6.542370 GGAATTTTTCGGATACTTCTCCATCA 59.458 38.462 0.00 0.00 34.78 3.07
5019 5157 6.927294 ATTTTTCGGATACTTCTCCATCAC 57.073 37.500 0.00 0.00 34.78 3.06
5020 5158 4.402056 TTTCGGATACTTCTCCATCACC 57.598 45.455 0.00 0.00 34.78 4.02
5021 5159 3.026707 TCGGATACTTCTCCATCACCA 57.973 47.619 0.00 0.00 34.78 4.17
5022 5160 3.371034 TCGGATACTTCTCCATCACCAA 58.629 45.455 0.00 0.00 34.78 3.67
5023 5161 3.772572 TCGGATACTTCTCCATCACCAAA 59.227 43.478 0.00 0.00 34.78 3.28
5024 5162 4.224147 TCGGATACTTCTCCATCACCAAAA 59.776 41.667 0.00 0.00 34.78 2.44
5025 5163 5.104527 TCGGATACTTCTCCATCACCAAAAT 60.105 40.000 0.00 0.00 34.78 1.82
5026 5164 5.590259 CGGATACTTCTCCATCACCAAAATT 59.410 40.000 0.00 0.00 34.78 1.82
5027 5165 6.095440 CGGATACTTCTCCATCACCAAAATTT 59.905 38.462 0.00 0.00 34.78 1.82
5028 5166 7.282224 CGGATACTTCTCCATCACCAAAATTTA 59.718 37.037 0.00 0.00 34.78 1.40
5029 5167 9.136323 GGATACTTCTCCATCACCAAAATTTAT 57.864 33.333 0.00 0.00 35.24 1.40
5030 5168 9.956720 GATACTTCTCCATCACCAAAATTTATG 57.043 33.333 0.00 0.00 0.00 1.90
5031 5169 9.699410 ATACTTCTCCATCACCAAAATTTATGA 57.301 29.630 0.00 0.00 0.00 2.15
5032 5170 8.421249 ACTTCTCCATCACCAAAATTTATGAA 57.579 30.769 0.00 0.00 0.00 2.57
5033 5171 8.869109 ACTTCTCCATCACCAAAATTTATGAAA 58.131 29.630 0.00 0.00 0.00 2.69
5034 5172 9.709495 CTTCTCCATCACCAAAATTTATGAAAA 57.291 29.630 0.00 0.00 0.00 2.29
5057 5195 8.995027 AAAAATACCATCATTCCTATAGCACA 57.005 30.769 0.00 0.00 0.00 4.57
5058 5196 9.592196 AAAAATACCATCATTCCTATAGCACAT 57.408 29.630 0.00 0.00 0.00 3.21
5059 5197 8.571461 AAATACCATCATTCCTATAGCACATG 57.429 34.615 0.00 0.00 0.00 3.21
5060 5198 5.573380 ACCATCATTCCTATAGCACATGT 57.427 39.130 0.00 0.00 0.00 3.21
5061 5199 5.311265 ACCATCATTCCTATAGCACATGTG 58.689 41.667 21.83 21.83 0.00 3.21
5071 5209 2.664851 CACATGTGCCCACGTCGT 60.665 61.111 13.94 0.00 0.00 4.34
5072 5210 2.664851 ACATGTGCCCACGTCGTG 60.665 61.111 18.54 18.54 0.00 4.35
5073 5211 4.088762 CATGTGCCCACGTCGTGC 62.089 66.667 20.01 10.25 31.34 5.34
5074 5212 4.617520 ATGTGCCCACGTCGTGCA 62.618 61.111 20.01 12.91 31.34 4.57
5075 5213 4.840005 TGTGCCCACGTCGTGCAA 62.840 61.111 20.01 4.40 36.65 4.08
5076 5214 3.578272 GTGCCCACGTCGTGCAAA 61.578 61.111 20.01 4.03 36.65 3.68
5077 5215 2.824489 TGCCCACGTCGTGCAAAA 60.824 55.556 20.01 2.21 31.34 2.44
5078 5216 2.407428 TGCCCACGTCGTGCAAAAA 61.407 52.632 20.01 0.43 31.34 1.94
5103 5241 6.738352 AAAAATCATGATTTTATCGCGCTC 57.262 33.333 35.08 0.00 46.76 5.03
5104 5242 4.410492 AATCATGATTTTATCGCGCTCC 57.590 40.909 15.36 0.00 0.00 4.70
5105 5243 1.792367 TCATGATTTTATCGCGCTCCG 59.208 47.619 5.56 0.00 38.61 4.63
5106 5244 6.757796 AAATCATGATTTTATCGCGCTCCGA 61.758 40.000 24.83 0.00 43.14 4.55
5107 5245 8.463119 AAATCATGATTTTATCGCGCTCCGAG 62.463 42.308 24.83 0.00 42.65 4.63
5114 5252 3.839654 TCGCGCTCCGAGTATTTAG 57.160 52.632 5.56 0.00 41.89 1.85
5115 5253 1.019673 TCGCGCTCCGAGTATTTAGT 58.980 50.000 5.56 0.00 41.89 2.24
5116 5254 2.212652 TCGCGCTCCGAGTATTTAGTA 58.787 47.619 5.56 0.00 41.89 1.82
5117 5255 2.613595 TCGCGCTCCGAGTATTTAGTAA 59.386 45.455 5.56 0.00 41.89 2.24
5118 5256 3.251729 TCGCGCTCCGAGTATTTAGTAAT 59.748 43.478 5.56 0.00 41.89 1.89
5119 5257 4.452114 TCGCGCTCCGAGTATTTAGTAATA 59.548 41.667 5.56 0.00 41.89 0.98
5120 5258 5.122869 TCGCGCTCCGAGTATTTAGTAATAT 59.877 40.000 5.56 0.00 41.89 1.28
5121 5259 5.798934 CGCGCTCCGAGTATTTAGTAATATT 59.201 40.000 5.56 0.00 40.02 1.28
5122 5260 6.237227 CGCGCTCCGAGTATTTAGTAATATTG 60.237 42.308 5.56 0.00 40.02 1.90
5123 5261 6.805271 GCGCTCCGAGTATTTAGTAATATTGA 59.195 38.462 0.00 0.00 0.00 2.57
5124 5262 7.201333 GCGCTCCGAGTATTTAGTAATATTGAC 60.201 40.741 0.00 0.00 0.00 3.18
5125 5263 7.007188 CGCTCCGAGTATTTAGTAATATTGACG 59.993 40.741 0.00 0.00 0.00 4.35
5126 5264 7.201333 GCTCCGAGTATTTAGTAATATTGACGC 60.201 40.741 0.00 0.00 0.00 5.19
5127 5265 7.879070 TCCGAGTATTTAGTAATATTGACGCT 58.121 34.615 0.00 0.00 0.00 5.07
5128 5266 7.806487 TCCGAGTATTTAGTAATATTGACGCTG 59.194 37.037 0.00 0.00 0.00 5.18
5129 5267 7.410513 CCGAGTATTTAGTAATATTGACGCTGC 60.411 40.741 0.00 0.00 0.00 5.25
5130 5268 7.114388 CGAGTATTTAGTAATATTGACGCTGCA 59.886 37.037 0.00 0.00 0.00 4.41
5131 5269 8.833231 AGTATTTAGTAATATTGACGCTGCAT 57.167 30.769 0.00 0.00 0.00 3.96
5132 5270 9.273016 AGTATTTAGTAATATTGACGCTGCATT 57.727 29.630 0.00 0.00 0.00 3.56
5133 5271 9.318041 GTATTTAGTAATATTGACGCTGCATTG 57.682 33.333 0.00 0.00 0.00 2.82
5134 5272 6.918892 TTAGTAATATTGACGCTGCATTGT 57.081 33.333 0.00 0.00 0.00 2.71
5135 5273 5.818136 AGTAATATTGACGCTGCATTGTT 57.182 34.783 0.00 0.00 0.00 2.83
5136 5274 6.918892 AGTAATATTGACGCTGCATTGTTA 57.081 33.333 0.00 0.00 0.00 2.41
5137 5275 6.715464 AGTAATATTGACGCTGCATTGTTAC 58.285 36.000 0.00 0.00 31.58 2.50
5138 5276 2.919666 ATTGACGCTGCATTGTTACC 57.080 45.000 0.00 0.00 0.00 2.85
5139 5277 0.515127 TTGACGCTGCATTGTTACCG 59.485 50.000 0.00 0.00 0.00 4.02
5140 5278 1.226018 GACGCTGCATTGTTACCGC 60.226 57.895 0.00 0.00 0.00 5.68
5141 5279 1.906994 GACGCTGCATTGTTACCGCA 61.907 55.000 0.00 0.00 0.00 5.69
5146 5284 0.515127 TGCATTGTTACCGCAGAACG 59.485 50.000 0.00 0.00 43.15 3.95
5147 5285 0.515564 GCATTGTTACCGCAGAACGT 59.484 50.000 0.00 0.00 41.42 3.99
5148 5286 1.463528 GCATTGTTACCGCAGAACGTC 60.464 52.381 0.00 0.00 41.42 4.34
5149 5287 2.066262 CATTGTTACCGCAGAACGTCT 58.934 47.619 0.00 0.00 41.42 4.18
5150 5288 3.247442 CATTGTTACCGCAGAACGTCTA 58.753 45.455 0.00 0.00 41.42 2.59
5151 5289 2.336554 TGTTACCGCAGAACGTCTAC 57.663 50.000 0.00 0.00 41.42 2.59
5152 5290 1.881973 TGTTACCGCAGAACGTCTACT 59.118 47.619 0.00 0.00 41.42 2.57
5153 5291 3.073678 TGTTACCGCAGAACGTCTACTA 58.926 45.455 0.00 0.00 41.42 1.82
5154 5292 3.120199 TGTTACCGCAGAACGTCTACTAC 60.120 47.826 0.00 0.00 41.42 2.73
5155 5293 0.807496 ACCGCAGAACGTCTACTACC 59.193 55.000 0.00 0.00 41.42 3.18
5156 5294 0.247974 CCGCAGAACGTCTACTACCG 60.248 60.000 0.00 0.00 41.42 4.02
5157 5295 0.445436 CGCAGAACGTCTACTACCGT 59.555 55.000 0.00 0.00 39.32 4.83
5158 5296 1.789410 CGCAGAACGTCTACTACCGTG 60.789 57.143 0.00 0.00 37.38 4.94
5159 5297 1.198637 GCAGAACGTCTACTACCGTGT 59.801 52.381 0.00 0.00 37.38 4.49
5160 5298 2.727298 GCAGAACGTCTACTACCGTGTC 60.727 54.545 0.00 0.00 37.38 3.67
5161 5299 2.481568 CAGAACGTCTACTACCGTGTCA 59.518 50.000 0.00 0.00 37.38 3.58
5162 5300 3.126514 CAGAACGTCTACTACCGTGTCAT 59.873 47.826 0.00 0.00 37.38 3.06
5163 5301 3.373439 AGAACGTCTACTACCGTGTCATC 59.627 47.826 0.00 0.00 37.38 2.92
5164 5302 1.662629 ACGTCTACTACCGTGTCATCG 59.337 52.381 0.00 0.00 35.69 3.84
5165 5303 1.594034 CGTCTACTACCGTGTCATCGC 60.594 57.143 0.00 0.00 0.00 4.58
5166 5304 1.019673 TCTACTACCGTGTCATCGCC 58.980 55.000 0.00 0.00 0.00 5.54
5167 5305 0.316772 CTACTACCGTGTCATCGCCG 60.317 60.000 0.00 0.00 0.00 6.46
5168 5306 1.026182 TACTACCGTGTCATCGCCGT 61.026 55.000 0.00 0.00 0.00 5.68
5169 5307 1.585521 CTACCGTGTCATCGCCGTC 60.586 63.158 0.00 0.00 0.00 4.79
5170 5308 2.931713 CTACCGTGTCATCGCCGTCC 62.932 65.000 0.00 0.00 0.00 4.79
5172 5310 4.771356 CGTGTCATCGCCGTCCGT 62.771 66.667 0.00 0.00 38.35 4.69
5173 5311 3.179265 GTGTCATCGCCGTCCGTG 61.179 66.667 0.00 0.00 38.35 4.94
5174 5312 3.366915 TGTCATCGCCGTCCGTGA 61.367 61.111 0.00 0.00 38.35 4.35
5175 5313 2.579787 GTCATCGCCGTCCGTGAG 60.580 66.667 0.00 0.00 38.35 3.51
5220 5358 3.017323 CGCATCTTCGGACATGCC 58.983 61.111 13.06 0.00 42.15 4.40
5221 5359 1.815003 CGCATCTTCGGACATGCCA 60.815 57.895 13.06 0.00 42.15 4.92
5222 5360 1.723870 GCATCTTCGGACATGCCAC 59.276 57.895 9.13 0.00 39.70 5.01
5223 5361 1.718757 GCATCTTCGGACATGCCACC 61.719 60.000 9.13 0.00 39.70 4.61
5224 5362 0.392863 CATCTTCGGACATGCCACCA 60.393 55.000 0.00 0.00 35.94 4.17
5225 5363 0.392998 ATCTTCGGACATGCCACCAC 60.393 55.000 0.00 0.00 35.94 4.16
5226 5364 1.302431 CTTCGGACATGCCACCACA 60.302 57.895 0.00 0.00 35.94 4.17
5227 5365 1.577328 CTTCGGACATGCCACCACAC 61.577 60.000 0.00 0.00 35.94 3.82
5228 5366 3.055719 CGGACATGCCACCACACC 61.056 66.667 0.00 0.00 35.94 4.16
5229 5367 2.115052 GGACATGCCACCACACCA 59.885 61.111 0.00 0.00 36.34 4.17
5230 5368 2.268076 GGACATGCCACCACACCAC 61.268 63.158 0.00 0.00 36.34 4.16
5231 5369 2.203480 ACATGCCACCACACCACC 60.203 61.111 0.00 0.00 0.00 4.61
5232 5370 2.990967 CATGCCACCACACCACCC 60.991 66.667 0.00 0.00 0.00 4.61
5233 5371 3.506743 ATGCCACCACACCACCCA 61.507 61.111 0.00 0.00 0.00 4.51
5234 5372 3.080158 ATGCCACCACACCACCCAA 62.080 57.895 0.00 0.00 0.00 4.12
5235 5373 3.223589 GCCACCACACCACCCAAC 61.224 66.667 0.00 0.00 0.00 3.77
5236 5374 2.277072 CCACCACACCACCCAACA 59.723 61.111 0.00 0.00 0.00 3.33
5237 5375 1.152567 CCACCACACCACCCAACAT 60.153 57.895 0.00 0.00 0.00 2.71
5238 5376 1.462731 CCACCACACCACCCAACATG 61.463 60.000 0.00 0.00 0.00 3.21
5239 5377 0.754957 CACCACACCACCCAACATGT 60.755 55.000 0.00 0.00 0.00 3.21
5240 5378 0.847373 ACCACACCACCCAACATGTA 59.153 50.000 0.00 0.00 0.00 2.29
5241 5379 1.427368 ACCACACCACCCAACATGTAT 59.573 47.619 0.00 0.00 0.00 2.29
5242 5380 1.818060 CCACACCACCCAACATGTATG 59.182 52.381 0.00 0.00 0.00 2.39
5243 5381 2.554124 CCACACCACCCAACATGTATGA 60.554 50.000 0.00 0.00 0.00 2.15
5244 5382 2.749076 CACACCACCCAACATGTATGAG 59.251 50.000 0.00 0.00 0.00 2.90
5245 5383 2.290896 ACACCACCCAACATGTATGAGG 60.291 50.000 0.00 1.45 0.00 3.86
5246 5384 1.284785 ACCACCCAACATGTATGAGGG 59.715 52.381 18.74 18.74 45.49 4.30
5247 5385 1.392589 CACCCAACATGTATGAGGGC 58.607 55.000 19.75 0.00 44.60 5.19
5248 5386 0.258774 ACCCAACATGTATGAGGGCC 59.741 55.000 19.75 0.00 44.60 5.80
5249 5387 0.468029 CCCAACATGTATGAGGGCCC 60.468 60.000 16.46 16.46 38.84 5.80
5250 5388 0.819259 CCAACATGTATGAGGGCCCG 60.819 60.000 18.44 0.95 0.00 6.13
5251 5389 0.819259 CAACATGTATGAGGGCCCGG 60.819 60.000 18.44 0.00 0.00 5.73
5252 5390 1.279025 AACATGTATGAGGGCCCGGT 61.279 55.000 18.44 9.14 0.00 5.28
5253 5391 1.227943 CATGTATGAGGGCCCGGTG 60.228 63.158 18.44 4.92 0.00 4.94
5254 5392 3.120086 ATGTATGAGGGCCCGGTGC 62.120 63.158 18.44 10.66 40.16 5.01
5255 5393 4.910585 GTATGAGGGCCCGGTGCG 62.911 72.222 18.44 0.00 42.61 5.34
5272 5410 3.499737 GACGCTCCGGTGGCATTG 61.500 66.667 18.63 7.99 0.00 2.82
5275 5413 2.124736 GCTCCGGTGGCATTGCTA 60.125 61.111 8.82 0.00 0.00 3.49
5276 5414 2.472909 GCTCCGGTGGCATTGCTAC 61.473 63.158 16.05 16.05 39.31 3.58
5550 5688 1.303317 ATGGACGGGCTTTGACCAC 60.303 57.895 0.00 0.00 34.13 4.16
5599 7071 2.642311 TCAGCCCATAGGAACACTTTGA 59.358 45.455 0.00 0.00 33.47 2.69
5870 13813 6.537660 CGTAGAGGGAATTTTTCGGATACTTT 59.462 38.462 0.00 0.00 0.00 2.66
5885 13828 6.072175 TCGGATACTTTTCCATCACCAAAAAG 60.072 38.462 5.52 5.52 42.77 2.27
5887 13830 6.868339 GGATACTTTTCCATCACCAAAAAGTG 59.132 38.462 17.95 0.00 46.87 3.16
7612 28973 3.268330 TCGGCTGTATAGATACCGCTAG 58.732 50.000 13.56 9.49 43.50 3.42
7660 29021 3.215975 AGGACTACGAGGCAGAAGTATC 58.784 50.000 0.00 0.00 0.00 2.24
7661 29022 2.950309 GGACTACGAGGCAGAAGTATCA 59.050 50.000 0.00 0.00 0.00 2.15
7665 29026 3.444703 ACGAGGCAGAAGTATCATCAC 57.555 47.619 0.00 0.00 0.00 3.06
7756 29118 1.261619 CAAGGTTGTGTCTGAGAACGC 59.738 52.381 0.00 0.00 0.00 4.84
7786 29148 2.241259 CGAATCGGTCGCATTTGTTT 57.759 45.000 0.00 0.00 44.14 2.83
7811 29173 2.304180 CCTCTCCCTGTTTCACTGTGAT 59.696 50.000 11.86 0.00 0.00 3.06
7812 29174 3.332919 CTCTCCCTGTTTCACTGTGATG 58.667 50.000 11.86 2.93 0.00 3.07
7813 29175 2.038952 TCTCCCTGTTTCACTGTGATGG 59.961 50.000 11.86 11.07 0.00 3.51
7821 29183 1.604308 CACTGTGATGGCAAGGGCA 60.604 57.895 0.32 0.00 43.71 5.36
7953 29316 4.103103 GCTGCCGCGTTTTCTCCC 62.103 66.667 4.92 0.00 0.00 4.30
7960 29323 1.298667 GCGTTTTCTCCCAGGGCTA 59.701 57.895 0.00 0.00 0.00 3.93
7979 29342 1.124477 ATAGGGGAGCTAGCACTGGC 61.124 60.000 18.83 0.00 41.61 4.85
8002 29365 4.331108 GCTTCTTCTTGATGGTCTCCTTT 58.669 43.478 0.00 0.00 0.00 3.11
8057 29420 4.513406 ACTCCCTTTGTGACCTAAAACA 57.487 40.909 0.00 0.00 0.00 2.83
8127 29590 3.961849 TCCAAATGTTAGTGCATGCCTA 58.038 40.909 16.68 13.10 0.00 3.93
8245 29781 8.207545 AGGATGACACTGATCTATTTTAACCTC 58.792 37.037 0.00 0.00 0.00 3.85
8286 32001 7.682824 TGTGAATTGCAAATTGTAGTGTTTTG 58.317 30.769 1.71 0.00 34.30 2.44
8325 32040 5.411361 GCAAGATGGGGAAAAATGTTTTACC 59.589 40.000 6.21 6.21 0.00 2.85
8417 32136 5.597806 TGGTACTGAAATAGCAGAATACCG 58.402 41.667 0.00 0.00 39.20 4.02
8501 32221 1.526575 GGGTGTGCATTGGACCACTG 61.527 60.000 7.46 7.46 33.26 3.66
8514 32234 5.703978 TGGACCACTGTTATCAAAATGTG 57.296 39.130 0.00 0.00 0.00 3.21
8531 32251 9.470399 TCAAAATGTGAGTGTACCTATCTACTA 57.530 33.333 0.00 0.00 0.00 1.82
8560 32282 4.812626 GCCTATTTACCGCTAAAAGTGCTA 59.187 41.667 0.00 0.00 0.00 3.49
8563 32285 6.759827 CCTATTTACCGCTAAAAGTGCTAAGA 59.240 38.462 0.00 0.00 0.00 2.10
8734 32456 2.950781 TCCTTCGCAGAGGTCTGATAT 58.049 47.619 11.29 0.00 46.59 1.63
8771 32493 5.568620 AGGAAGTTGTGATAGTTTCCTGT 57.431 39.130 3.45 0.00 44.38 4.00
8827 32549 5.419155 ACGGATATGTGTATCAGTATCAGGG 59.581 44.000 0.45 0.00 41.78 4.45
8851 32573 6.023435 GCGATACGGATATGTAAATACGTCA 58.977 40.000 0.00 0.00 42.79 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.472662 CGGAGGTCTGTGTTGGGTCT 61.473 60.000 0.00 0.00 0.00 3.85
93 94 4.021229 GTGGAACTCCCGGGAAATAAATT 58.979 43.478 26.68 11.74 37.93 1.82
140 151 4.265073 GAGGTATGTGTCTTGCCTGAATT 58.735 43.478 0.00 0.00 0.00 2.17
193 209 2.703007 GGTCAGGCAGATTCTGGACTAT 59.297 50.000 15.28 0.00 33.36 2.12
194 210 2.111384 GGTCAGGCAGATTCTGGACTA 58.889 52.381 15.28 0.00 33.36 2.59
196 212 0.908198 AGGTCAGGCAGATTCTGGAC 59.092 55.000 15.28 12.90 33.36 4.02
207 223 4.523083 TCATTTTATGTACCAGGTCAGGC 58.477 43.478 0.00 0.00 0.00 4.85
267 292 5.109210 CAACGTATCCTATGAGTTGCTTGA 58.891 41.667 0.00 0.00 36.27 3.02
398 426 9.737844 ATGTGGTAAAGCAATCCAAATTATTTT 57.262 25.926 0.00 0.00 32.82 1.82
717 785 4.163427 TGGTGGAAAATTGGGCAAAGATA 58.837 39.130 0.00 0.00 0.00 1.98
746 814 0.894835 GAATTTTGGGGTGATGCGGT 59.105 50.000 0.00 0.00 0.00 5.68
806 874 3.550431 ACCGCCGCCAGCTATCAT 61.550 61.111 0.00 0.00 40.39 2.45
807 875 4.529219 CACCGCCGCCAGCTATCA 62.529 66.667 0.00 0.00 40.39 2.15
823 891 1.349357 TCATTCACCACGGATCCAACA 59.651 47.619 13.41 0.00 0.00 3.33
825 893 1.678728 GCTCATTCACCACGGATCCAA 60.679 52.381 13.41 0.00 0.00 3.53
919 994 4.680237 CTCCTTCGCCGGCACACA 62.680 66.667 28.98 3.35 0.00 3.72
987 1062 1.971167 GGCCATCAGGAACGCAACA 60.971 57.895 0.00 0.00 36.89 3.33
989 1064 2.361104 GGGCCATCAGGAACGCAA 60.361 61.111 4.39 0.00 36.89 4.85
990 1065 3.645660 TGGGCCATCAGGAACGCA 61.646 61.111 0.00 0.00 36.89 5.24
1075 1150 2.897271 TACAAGGCATCAACCATGGT 57.103 45.000 13.00 13.00 32.63 3.55
1093 1168 3.795905 GGGGGTTCGCCGGATATA 58.204 61.111 5.05 0.00 38.45 0.86
1133 1208 4.868067 AGATTTGTTGTAGTCGTCGAACT 58.132 39.130 0.00 0.00 0.00 3.01
1323 1398 1.996798 ACTTCCAGAAGAGGACACGA 58.003 50.000 14.19 0.00 40.79 4.35
1355 1430 1.202818 AGAAGACAACCCTGCAACTCC 60.203 52.381 0.00 0.00 0.00 3.85
1373 1448 1.303799 GCTGACGGTGAGGACGTAGA 61.304 60.000 0.00 0.00 45.68 2.59
1436 1526 4.043310 ACTTGTCCTTCTTCATGGATGGAA 59.957 41.667 7.79 0.00 39.93 3.53
1437 1527 3.588842 ACTTGTCCTTCTTCATGGATGGA 59.411 43.478 0.00 0.00 37.26 3.41
1500 1596 4.356405 CCAATGTAGGCATCCATGTAGA 57.644 45.455 0.00 0.00 33.50 2.59
1566 1671 2.029623 GATTGCACCCAGCTGAATGAT 58.970 47.619 17.39 3.31 45.94 2.45
1609 1714 1.593006 GGTGCGATTTCGGTAGTGATG 59.407 52.381 1.75 0.00 40.23 3.07
1660 1767 0.175760 CTGTCCGGACGTCCATTCAT 59.824 55.000 32.80 0.00 35.14 2.57
1731 1838 1.221840 CGGCATTCCTGGCTACACT 59.778 57.895 0.00 0.00 45.42 3.55
1912 2025 2.029666 GCCGACAGCTATGCCGAT 59.970 61.111 0.00 0.00 33.67 4.18
2036 2152 2.159707 CCGTCGGCATAGTTTGAAACTG 60.160 50.000 20.06 6.87 42.84 3.16
2092 2208 2.283604 TGCCGTGAGCTCCCAGTA 60.284 61.111 12.15 0.00 44.23 2.74
2394 2510 1.703411 CCTTTGGGTCACATTGTGGT 58.297 50.000 16.46 0.00 33.87 4.16
2556 2684 1.959848 CAGCACTCCAGAGACACGA 59.040 57.895 0.70 0.00 0.00 4.35
2565 2693 2.343758 GGTCTTCGCAGCACTCCA 59.656 61.111 0.00 0.00 0.00 3.86
2711 2839 1.029408 AGTTTGTGGCACAGAACGCA 61.029 50.000 25.49 10.51 42.76 5.24
2802 2930 2.243221 AGCAGGCTTTTCAGGATATGGT 59.757 45.455 0.00 0.00 0.00 3.55
2912 3040 5.635278 ATGAGTTCCATCATGTCATACCA 57.365 39.130 0.00 0.00 38.49 3.25
3106 3234 1.734137 GAGGCGGTTCTCGATGCTA 59.266 57.895 0.00 0.00 42.43 3.49
3170 3298 4.545706 CCCATTGCGGCGCCTCTA 62.546 66.667 30.82 14.94 0.00 2.43
3311 3439 1.668793 CTCACACATGCAGGCGTGA 60.669 57.895 19.78 19.78 36.91 4.35
3594 3724 3.103742 GCATAGGCCTCCTATCTAAGCT 58.896 50.000 9.68 0.00 44.19 3.74
3595 3725 3.535280 GCATAGGCCTCCTATCTAAGC 57.465 52.381 9.68 0.00 44.19 3.09
3720 3850 3.022607 ACCGGAGCTTATAACGTATGC 57.977 47.619 9.46 0.00 0.00 3.14
3969 4102 1.086696 CCATGGTCAAACGCTACAGG 58.913 55.000 2.57 0.00 0.00 4.00
3995 4128 0.181587 TCCGTGCAAAGTCAAAGGGA 59.818 50.000 0.00 0.00 0.00 4.20
4077 4210 2.361610 CTGGCCCGGATGTTGCTT 60.362 61.111 0.73 0.00 0.00 3.91
4307 4443 0.462047 CTCTACGCGGATTGCCCTTT 60.462 55.000 12.47 0.00 42.08 3.11
4415 4551 2.413112 CGGAGCGCGATAAAATCATGAT 59.587 45.455 12.10 1.18 0.00 2.45
4565 4701 1.692749 ACCGGGCCCTCATACATGT 60.693 57.895 22.43 2.69 0.00 3.21
4631 4769 0.250166 GTGGTCAAACGCTACAGGGT 60.250 55.000 0.00 0.00 43.39 4.34
4632 4770 1.289109 CGTGGTCAAACGCTACAGGG 61.289 60.000 0.00 0.00 36.65 4.45
4633 4771 1.289109 CCGTGGTCAAACGCTACAGG 61.289 60.000 0.00 0.00 42.23 4.00
4634 4772 1.289109 CCCGTGGTCAAACGCTACAG 61.289 60.000 0.00 0.00 42.23 2.74
4635 4773 1.301087 CCCGTGGTCAAACGCTACA 60.301 57.895 0.00 0.00 42.23 2.74
4636 4774 0.390735 ATCCCGTGGTCAAACGCTAC 60.391 55.000 0.00 0.00 42.23 3.58
4637 4775 0.108520 GATCCCGTGGTCAAACGCTA 60.109 55.000 0.00 0.00 42.23 4.26
4638 4776 1.375523 GATCCCGTGGTCAAACGCT 60.376 57.895 0.00 0.00 42.23 5.07
4639 4777 0.108520 TAGATCCCGTGGTCAAACGC 60.109 55.000 0.00 0.00 42.23 4.84
4640 4778 1.922570 CTAGATCCCGTGGTCAAACG 58.077 55.000 0.00 0.00 43.20 3.60
4641 4779 1.653151 GCTAGATCCCGTGGTCAAAC 58.347 55.000 0.00 0.00 0.00 2.93
4642 4780 0.539986 GGCTAGATCCCGTGGTCAAA 59.460 55.000 0.00 0.00 0.00 2.69
4643 4781 1.335132 GGGCTAGATCCCGTGGTCAA 61.335 60.000 0.00 0.00 36.38 3.18
4644 4782 1.760875 GGGCTAGATCCCGTGGTCA 60.761 63.158 0.00 0.00 36.38 4.02
4645 4783 3.139565 GGGCTAGATCCCGTGGTC 58.860 66.667 0.00 0.00 36.38 4.02
4651 4789 3.282885 CAAAGTCAAAGGGCTAGATCCC 58.717 50.000 0.00 0.00 46.93 3.85
4652 4790 2.685388 GCAAAGTCAAAGGGCTAGATCC 59.315 50.000 0.00 0.00 0.00 3.36
4653 4791 3.127721 GTGCAAAGTCAAAGGGCTAGATC 59.872 47.826 0.00 0.00 0.00 2.75
4654 4792 3.084786 GTGCAAAGTCAAAGGGCTAGAT 58.915 45.455 0.00 0.00 0.00 1.98
4655 4793 2.504367 GTGCAAAGTCAAAGGGCTAGA 58.496 47.619 0.00 0.00 0.00 2.43
4656 4794 1.197721 CGTGCAAAGTCAAAGGGCTAG 59.802 52.381 0.00 0.00 0.00 3.42
4657 4795 1.234821 CGTGCAAAGTCAAAGGGCTA 58.765 50.000 0.00 0.00 0.00 3.93
4658 4796 1.455383 CCGTGCAAAGTCAAAGGGCT 61.455 55.000 0.00 0.00 0.00 5.19
4659 4797 1.007387 CCGTGCAAAGTCAAAGGGC 60.007 57.895 0.00 0.00 0.00 5.19
4660 4798 0.310854 GTCCGTGCAAAGTCAAAGGG 59.689 55.000 0.00 0.00 0.00 3.95
4661 4799 0.041312 CGTCCGTGCAAAGTCAAAGG 60.041 55.000 0.00 0.00 0.00 3.11
4662 4800 0.041312 CCGTCCGTGCAAAGTCAAAG 60.041 55.000 0.00 0.00 0.00 2.77
4663 4801 1.440938 CCCGTCCGTGCAAAGTCAAA 61.441 55.000 0.00 0.00 0.00 2.69
4664 4802 1.890041 CCCGTCCGTGCAAAGTCAA 60.890 57.895 0.00 0.00 0.00 3.18
4665 4803 2.280524 CCCGTCCGTGCAAAGTCA 60.281 61.111 0.00 0.00 0.00 3.41
4666 4804 3.723348 GCCCGTCCGTGCAAAGTC 61.723 66.667 0.00 0.00 0.00 3.01
4667 4805 3.767630 AAGCCCGTCCGTGCAAAGT 62.768 57.895 0.00 0.00 0.00 2.66
4668 4806 2.551912 AAAGCCCGTCCGTGCAAAG 61.552 57.895 0.00 0.00 0.00 2.77
4669 4807 2.517402 AAAGCCCGTCCGTGCAAA 60.517 55.556 0.00 0.00 0.00 3.68
4670 4808 3.283684 CAAAGCCCGTCCGTGCAA 61.284 61.111 0.00 0.00 0.00 4.08
4671 4809 4.243008 TCAAAGCCCGTCCGTGCA 62.243 61.111 0.00 0.00 0.00 4.57
4672 4810 3.723348 GTCAAAGCCCGTCCGTGC 61.723 66.667 0.00 0.00 0.00 5.34
4673 4811 3.047877 GGTCAAAGCCCGTCCGTG 61.048 66.667 0.00 0.00 0.00 4.94
4674 4812 3.530910 CTGGTCAAAGCCCGTCCGT 62.531 63.158 0.00 0.00 0.00 4.69
4675 4813 2.742372 CTGGTCAAAGCCCGTCCG 60.742 66.667 0.00 0.00 0.00 4.79
4676 4814 1.966451 CACTGGTCAAAGCCCGTCC 60.966 63.158 0.00 0.00 0.00 4.79
4677 4815 1.966451 CCACTGGTCAAAGCCCGTC 60.966 63.158 0.00 0.00 0.00 4.79
4678 4816 2.113139 CCACTGGTCAAAGCCCGT 59.887 61.111 0.00 0.00 0.00 5.28
4679 4817 1.966451 GTCCACTGGTCAAAGCCCG 60.966 63.158 0.00 0.00 0.00 6.13
4680 4818 1.603739 GGTCCACTGGTCAAAGCCC 60.604 63.158 0.00 0.00 0.00 5.19
4681 4819 1.966451 CGGTCCACTGGTCAAAGCC 60.966 63.158 0.00 0.00 0.00 4.35
4682 4820 2.617274 GCGGTCCACTGGTCAAAGC 61.617 63.158 0.00 0.00 0.00 3.51
4683 4821 1.966451 GGCGGTCCACTGGTCAAAG 60.966 63.158 0.00 0.00 0.00 2.77
4684 4822 2.112297 GGCGGTCCACTGGTCAAA 59.888 61.111 0.00 0.00 0.00 2.69
4685 4823 3.948719 GGGCGGTCCACTGGTCAA 61.949 66.667 0.00 0.00 35.00 3.18
4699 4837 3.494736 TAACACAACCGGGTGGGGC 62.495 63.158 28.84 0.00 43.08 5.80
4700 4838 1.302993 CTAACACAACCGGGTGGGG 60.303 63.158 28.84 19.33 43.08 4.96
4701 4839 1.302993 CCTAACACAACCGGGTGGG 60.303 63.158 23.41 23.41 43.08 4.61
4702 4840 0.604511 GACCTAACACAACCGGGTGG 60.605 60.000 26.30 15.44 43.08 4.61
4703 4841 0.107081 TGACCTAACACAACCGGGTG 59.893 55.000 20.60 20.60 44.35 4.61
4704 4842 0.395312 CTGACCTAACACAACCGGGT 59.605 55.000 6.32 0.00 0.00 5.28
4705 4843 0.953960 GCTGACCTAACACAACCGGG 60.954 60.000 6.32 0.00 0.00 5.73
4706 4844 0.953960 GGCTGACCTAACACAACCGG 60.954 60.000 0.00 0.00 0.00 5.28
4707 4845 0.953960 GGGCTGACCTAACACAACCG 60.954 60.000 0.00 0.00 35.85 4.44
4708 4846 0.109723 TGGGCTGACCTAACACAACC 59.890 55.000 0.00 0.00 41.11 3.77
4709 4847 2.200373 ATGGGCTGACCTAACACAAC 57.800 50.000 0.00 0.00 41.11 3.32
4710 4848 2.238646 CCTATGGGCTGACCTAACACAA 59.761 50.000 0.00 0.00 41.11 3.33
4711 4849 1.837439 CCTATGGGCTGACCTAACACA 59.163 52.381 0.00 0.00 41.11 3.72
4712 4850 2.116238 TCCTATGGGCTGACCTAACAC 58.884 52.381 0.00 0.00 41.11 3.32
4713 4851 2.504175 GTTCCTATGGGCTGACCTAACA 59.496 50.000 0.00 0.00 41.11 2.41
4714 4852 2.504175 TGTTCCTATGGGCTGACCTAAC 59.496 50.000 0.00 0.00 41.11 2.34
4715 4853 2.504175 GTGTTCCTATGGGCTGACCTAA 59.496 50.000 0.00 0.00 41.11 2.69
4716 4854 2.116238 GTGTTCCTATGGGCTGACCTA 58.884 52.381 0.00 0.00 41.11 3.08
4717 4855 0.912486 GTGTTCCTATGGGCTGACCT 59.088 55.000 0.00 0.00 41.11 3.85
4718 4856 0.912486 AGTGTTCCTATGGGCTGACC 59.088 55.000 0.00 0.00 40.81 4.02
4719 4857 2.749621 CAAAGTGTTCCTATGGGCTGAC 59.250 50.000 0.00 0.00 0.00 3.51
4720 4858 2.290896 CCAAAGTGTTCCTATGGGCTGA 60.291 50.000 0.00 0.00 0.00 4.26
4721 4859 2.094675 CCAAAGTGTTCCTATGGGCTG 58.905 52.381 0.00 0.00 0.00 4.85
4722 4860 1.992557 TCCAAAGTGTTCCTATGGGCT 59.007 47.619 0.00 0.00 0.00 5.19
4723 4861 2.369394 CTCCAAAGTGTTCCTATGGGC 58.631 52.381 0.00 0.00 0.00 5.36
4724 4862 2.290896 TGCTCCAAAGTGTTCCTATGGG 60.291 50.000 0.00 0.00 0.00 4.00
4725 4863 3.071874 TGCTCCAAAGTGTTCCTATGG 57.928 47.619 0.00 0.00 0.00 2.74
4726 4864 3.820467 TGTTGCTCCAAAGTGTTCCTATG 59.180 43.478 0.00 0.00 0.00 2.23
4727 4865 4.098914 TGTTGCTCCAAAGTGTTCCTAT 57.901 40.909 0.00 0.00 0.00 2.57
4728 4866 3.569194 TGTTGCTCCAAAGTGTTCCTA 57.431 42.857 0.00 0.00 0.00 2.94
4729 4867 2.435372 TGTTGCTCCAAAGTGTTCCT 57.565 45.000 0.00 0.00 0.00 3.36
4730 4868 2.029918 GGATGTTGCTCCAAAGTGTTCC 60.030 50.000 0.00 0.00 35.24 3.62
4731 4869 2.350772 CGGATGTTGCTCCAAAGTGTTC 60.351 50.000 0.00 0.00 34.78 3.18
4732 4870 1.608590 CGGATGTTGCTCCAAAGTGTT 59.391 47.619 0.00 0.00 34.78 3.32
4733 4871 1.238439 CGGATGTTGCTCCAAAGTGT 58.762 50.000 0.00 0.00 34.78 3.55
4734 4872 0.523072 CCGGATGTTGCTCCAAAGTG 59.477 55.000 0.00 0.00 34.78 3.16
4735 4873 0.609131 CCCGGATGTTGCTCCAAAGT 60.609 55.000 0.73 0.00 34.78 2.66
4736 4874 1.937546 GCCCGGATGTTGCTCCAAAG 61.938 60.000 0.73 0.00 34.78 2.77
4737 4875 1.976474 GCCCGGATGTTGCTCCAAA 60.976 57.895 0.73 0.00 34.78 3.28
4738 4876 2.361104 GCCCGGATGTTGCTCCAA 60.361 61.111 0.73 0.00 34.78 3.53
4739 4877 4.424711 GGCCCGGATGTTGCTCCA 62.425 66.667 0.73 0.00 34.78 3.86
4740 4878 4.424711 TGGCCCGGATGTTGCTCC 62.425 66.667 0.73 0.00 0.00 4.70
4741 4879 2.825836 CTGGCCCGGATGTTGCTC 60.826 66.667 0.73 0.00 0.00 4.26
4742 4880 3.329889 TCTGGCCCGGATGTTGCT 61.330 61.111 0.73 0.00 0.00 3.91
4743 4881 3.134127 GTCTGGCCCGGATGTTGC 61.134 66.667 0.73 0.00 0.00 4.17
4744 4882 2.438434 GGTCTGGCCCGGATGTTG 60.438 66.667 0.73 0.00 0.00 3.33
4753 4891 0.251341 ATCTTGTTGTGGGTCTGGCC 60.251 55.000 0.00 0.00 0.00 5.36
4754 4892 1.168714 GATCTTGTTGTGGGTCTGGC 58.831 55.000 0.00 0.00 0.00 4.85
4755 4893 1.614317 GGGATCTTGTTGTGGGTCTGG 60.614 57.143 0.00 0.00 0.00 3.86
4756 4894 1.614317 GGGGATCTTGTTGTGGGTCTG 60.614 57.143 0.00 0.00 0.00 3.51
4757 4895 0.698818 GGGGATCTTGTTGTGGGTCT 59.301 55.000 0.00 0.00 0.00 3.85
4758 4896 0.698818 AGGGGATCTTGTTGTGGGTC 59.301 55.000 0.00 0.00 0.00 4.46
4759 4897 0.698818 GAGGGGATCTTGTTGTGGGT 59.301 55.000 0.00 0.00 0.00 4.51
4760 4898 0.034089 GGAGGGGATCTTGTTGTGGG 60.034 60.000 0.00 0.00 0.00 4.61
4761 4899 0.392998 CGGAGGGGATCTTGTTGTGG 60.393 60.000 0.00 0.00 0.00 4.17
4762 4900 0.324943 ACGGAGGGGATCTTGTTGTG 59.675 55.000 0.00 0.00 0.00 3.33
4763 4901 0.324943 CACGGAGGGGATCTTGTTGT 59.675 55.000 0.00 0.00 0.00 3.32
4764 4902 0.324943 ACACGGAGGGGATCTTGTTG 59.675 55.000 0.00 0.00 0.00 3.33
4765 4903 1.831736 CTACACGGAGGGGATCTTGTT 59.168 52.381 0.00 0.00 0.00 2.83
4766 4904 1.006758 TCTACACGGAGGGGATCTTGT 59.993 52.381 0.00 0.00 0.00 3.16
4767 4905 1.409427 GTCTACACGGAGGGGATCTTG 59.591 57.143 0.00 0.00 0.00 3.02
4768 4906 1.688627 GGTCTACACGGAGGGGATCTT 60.689 57.143 0.00 0.00 0.00 2.40
4769 4907 0.106116 GGTCTACACGGAGGGGATCT 60.106 60.000 0.00 0.00 0.00 2.75
4770 4908 1.114119 GGGTCTACACGGAGGGGATC 61.114 65.000 0.00 0.00 0.00 3.36
4771 4909 1.075450 GGGTCTACACGGAGGGGAT 60.075 63.158 0.00 0.00 0.00 3.85
4772 4910 2.361771 GGGTCTACACGGAGGGGA 59.638 66.667 0.00 0.00 0.00 4.81
4773 4911 2.762875 GGGGTCTACACGGAGGGG 60.763 72.222 0.00 0.00 0.00 4.79
4774 4912 2.038329 TGGGGTCTACACGGAGGG 59.962 66.667 0.00 0.00 0.00 4.30
4775 4913 3.295800 GTGGGGTCTACACGGAGG 58.704 66.667 0.00 0.00 0.00 4.30
4780 4918 2.126189 GACGCGTGGGGTCTACAC 60.126 66.667 20.70 0.00 41.34 2.90
4781 4919 3.376078 GGACGCGTGGGGTCTACA 61.376 66.667 20.70 0.00 43.54 2.74
4782 4920 4.487412 CGGACGCGTGGGGTCTAC 62.487 72.222 20.70 0.00 43.54 2.59
4785 4923 4.974989 AAACGGACGCGTGGGGTC 62.975 66.667 20.70 0.00 43.35 4.46
4786 4924 4.974989 GAAACGGACGCGTGGGGT 62.975 66.667 20.70 8.78 0.00 4.95
4788 4926 4.675029 AGGAAACGGACGCGTGGG 62.675 66.667 20.70 11.05 0.00 4.61
4789 4927 3.110178 GAGGAAACGGACGCGTGG 61.110 66.667 20.70 11.49 0.00 4.94
4790 4928 3.110178 GGAGGAAACGGACGCGTG 61.110 66.667 20.70 5.54 0.00 5.34
4791 4929 2.760387 GAAGGAGGAAACGGACGCGT 62.760 60.000 13.85 13.85 0.00 6.01
4792 4930 2.048503 AAGGAGGAAACGGACGCG 60.049 61.111 3.53 3.53 0.00 6.01
4793 4931 1.740664 GGAAGGAGGAAACGGACGC 60.741 63.158 0.00 0.00 0.00 5.19
4794 4932 0.389948 CTGGAAGGAGGAAACGGACG 60.390 60.000 0.00 0.00 0.00 4.79
4795 4933 3.534721 CTGGAAGGAGGAAACGGAC 57.465 57.895 0.00 0.00 0.00 4.79
4860 4998 3.645157 GATGCAAACGCCCGACACG 62.645 63.158 0.00 0.00 0.00 4.49
4861 4999 2.175811 GATGCAAACGCCCGACAC 59.824 61.111 0.00 0.00 0.00 3.67
4862 5000 3.053291 GGATGCAAACGCCCGACA 61.053 61.111 0.00 0.00 0.00 4.35
4863 5001 4.160635 CGGATGCAAACGCCCGAC 62.161 66.667 8.50 0.00 44.29 4.79
4869 5007 1.729131 GTTGTGGCGGATGCAAACG 60.729 57.895 8.81 8.81 45.35 3.60
4870 5008 0.939106 GTGTTGTGGCGGATGCAAAC 60.939 55.000 0.00 0.00 45.35 2.93
4871 5009 1.106351 AGTGTTGTGGCGGATGCAAA 61.106 50.000 0.00 0.00 45.35 3.68
4872 5010 1.106351 AAGTGTTGTGGCGGATGCAA 61.106 50.000 0.00 0.00 45.35 4.08
4873 5011 1.514678 GAAGTGTTGTGGCGGATGCA 61.515 55.000 0.00 0.00 45.35 3.96
4874 5012 1.210155 GAAGTGTTGTGGCGGATGC 59.790 57.895 0.00 0.00 41.71 3.91
4875 5013 0.888736 TGGAAGTGTTGTGGCGGATG 60.889 55.000 0.00 0.00 0.00 3.51
4876 5014 0.606401 CTGGAAGTGTTGTGGCGGAT 60.606 55.000 0.00 0.00 0.00 4.18
4877 5015 1.227823 CTGGAAGTGTTGTGGCGGA 60.228 57.895 0.00 0.00 0.00 5.54
4878 5016 1.227823 TCTGGAAGTGTTGTGGCGG 60.228 57.895 0.00 0.00 33.76 6.13
4879 5017 0.532862 AGTCTGGAAGTGTTGTGGCG 60.533 55.000 0.00 0.00 33.76 5.69
4880 5018 1.334869 CAAGTCTGGAAGTGTTGTGGC 59.665 52.381 0.00 0.00 33.76 5.01
4881 5019 2.355756 CACAAGTCTGGAAGTGTTGTGG 59.644 50.000 5.75 0.00 45.93 4.17
4882 5020 3.680642 CACAAGTCTGGAAGTGTTGTG 57.319 47.619 0.00 0.00 45.19 3.33
4883 5021 3.197766 TCTCACAAGTCTGGAAGTGTTGT 59.802 43.478 0.00 0.00 40.07 3.32
4884 5022 3.797039 TCTCACAAGTCTGGAAGTGTTG 58.203 45.455 0.00 0.00 35.03 3.33
4885 5023 3.181461 CCTCTCACAAGTCTGGAAGTGTT 60.181 47.826 0.00 0.00 33.84 3.32
4886 5024 2.366916 CCTCTCACAAGTCTGGAAGTGT 59.633 50.000 0.00 0.00 33.84 3.55
4887 5025 2.869636 GCCTCTCACAAGTCTGGAAGTG 60.870 54.545 0.00 0.00 33.76 3.16
4888 5026 1.346068 GCCTCTCACAAGTCTGGAAGT 59.654 52.381 0.00 0.00 33.76 3.01
4889 5027 1.338579 GGCCTCTCACAAGTCTGGAAG 60.339 57.143 0.00 0.00 0.00 3.46
4890 5028 0.687354 GGCCTCTCACAAGTCTGGAA 59.313 55.000 0.00 0.00 0.00 3.53
4891 5029 1.536073 CGGCCTCTCACAAGTCTGGA 61.536 60.000 0.00 0.00 0.00 3.86
4892 5030 1.079543 CGGCCTCTCACAAGTCTGG 60.080 63.158 0.00 0.00 0.00 3.86
4893 5031 1.739562 GCGGCCTCTCACAAGTCTG 60.740 63.158 0.00 0.00 0.00 3.51
4894 5032 2.659610 GCGGCCTCTCACAAGTCT 59.340 61.111 0.00 0.00 0.00 3.24
4895 5033 2.435059 GGCGGCCTCTCACAAGTC 60.435 66.667 12.87 0.00 0.00 3.01
4896 5034 4.379243 CGGCGGCCTCTCACAAGT 62.379 66.667 18.34 0.00 0.00 3.16
4908 5046 4.834892 CAAATCTTGCGCCGGCGG 62.835 66.667 45.81 31.24 44.10 6.13
4909 5047 4.834892 CCAAATCTTGCGCCGGCG 62.835 66.667 43.13 43.13 44.10 6.46
4911 5049 4.834892 CGCCAAATCTTGCGCCGG 62.835 66.667 4.18 0.00 44.64 6.13
4916 5054 2.169146 GCATGCCGCCAAATCTTGC 61.169 57.895 6.36 0.00 32.94 4.01
4917 5055 0.740149 TAGCATGCCGCCAAATCTTG 59.260 50.000 15.66 0.00 44.04 3.02
4918 5056 1.027357 CTAGCATGCCGCCAAATCTT 58.973 50.000 15.66 0.00 44.04 2.40
4919 5057 1.450531 GCTAGCATGCCGCCAAATCT 61.451 55.000 15.66 0.00 44.04 2.40
4920 5058 1.008079 GCTAGCATGCCGCCAAATC 60.008 57.895 15.66 0.00 44.04 2.17
4921 5059 2.492773 GGCTAGCATGCCGCCAAAT 61.493 57.895 32.30 10.60 43.74 2.32
4922 5060 3.140141 GGCTAGCATGCCGCCAAA 61.140 61.111 32.30 6.94 43.74 3.28
4929 5067 4.632974 CTCCGGGGGCTAGCATGC 62.633 72.222 18.24 10.51 0.00 4.06
4930 5068 3.946201 CCTCCGGGGGCTAGCATG 61.946 72.222 7.91 2.35 0.00 4.06
4950 5088 3.755628 TCTACGACTGTGGCCGGC 61.756 66.667 21.18 21.18 0.00 6.13
4951 5089 2.181021 GTCTACGACTGTGGCCGG 59.819 66.667 0.00 0.00 0.00 6.13
4952 5090 2.202440 CGTCTACGACTGTGGCCG 60.202 66.667 0.00 0.00 43.02 6.13
4953 5091 2.506438 GCGTCTACGACTGTGGCC 60.506 66.667 6.71 0.00 43.02 5.36
4954 5092 2.874780 CGCGTCTACGACTGTGGC 60.875 66.667 6.71 0.00 43.02 5.01
4955 5093 2.874780 GCGCGTCTACGACTGTGG 60.875 66.667 8.43 0.00 43.02 4.17
4956 5094 3.231260 CGCGCGTCTACGACTGTG 61.231 66.667 24.19 0.00 43.02 3.66
4957 5095 2.829577 CTTCGCGCGTCTACGACTGT 62.830 60.000 30.98 0.00 43.02 3.55
4958 5096 2.202260 TTCGCGCGTCTACGACTG 60.202 61.111 30.98 0.00 43.02 3.51
4959 5097 2.097918 CTTCGCGCGTCTACGACT 59.902 61.111 30.98 0.00 43.02 4.18
4960 5098 2.943034 CCTTCGCGCGTCTACGAC 60.943 66.667 30.98 0.00 43.02 4.34
4961 5099 4.170062 CCCTTCGCGCGTCTACGA 62.170 66.667 30.98 6.01 43.02 3.43
4963 5101 4.789075 TGCCCTTCGCGCGTCTAC 62.789 66.667 30.98 16.68 42.08 2.59
4964 5102 3.365291 ATTGCCCTTCGCGCGTCTA 62.365 57.895 30.98 15.26 42.08 2.59
4965 5103 4.760047 ATTGCCCTTCGCGCGTCT 62.760 61.111 30.98 3.61 42.08 4.18
4966 5104 4.223964 GATTGCCCTTCGCGCGTC 62.224 66.667 30.98 13.57 42.08 5.19
4972 5110 1.363145 TTTACGCGGATTGCCCTTCG 61.363 55.000 12.47 0.00 42.08 3.79
4973 5111 0.377203 CTTTACGCGGATTGCCCTTC 59.623 55.000 12.47 0.00 42.08 3.46
4974 5112 1.029947 CCTTTACGCGGATTGCCCTT 61.030 55.000 12.47 0.00 42.08 3.95
4975 5113 1.451387 CCTTTACGCGGATTGCCCT 60.451 57.895 12.47 0.00 42.08 5.19
4976 5114 2.478033 CCCTTTACGCGGATTGCCC 61.478 63.158 12.47 0.00 42.08 5.36
4977 5115 1.027792 TTCCCTTTACGCGGATTGCC 61.028 55.000 12.47 0.00 42.08 4.52
4978 5116 1.021968 ATTCCCTTTACGCGGATTGC 58.978 50.000 12.47 0.00 41.47 3.56
4979 5117 3.775661 AAATTCCCTTTACGCGGATTG 57.224 42.857 12.47 0.00 0.00 2.67
4980 5118 4.673320 CGAAAAATTCCCTTTACGCGGATT 60.673 41.667 12.47 0.00 0.00 3.01
4981 5119 3.181504 CGAAAAATTCCCTTTACGCGGAT 60.182 43.478 12.47 0.00 0.00 4.18
4982 5120 2.160022 CGAAAAATTCCCTTTACGCGGA 59.840 45.455 12.47 0.00 0.00 5.54
4983 5121 2.511879 CGAAAAATTCCCTTTACGCGG 58.488 47.619 12.47 0.00 0.00 6.46
4984 5122 2.160022 TCCGAAAAATTCCCTTTACGCG 59.840 45.455 3.53 3.53 0.00 6.01
4985 5123 3.835378 TCCGAAAAATTCCCTTTACGC 57.165 42.857 0.00 0.00 0.00 4.42
4986 5124 6.673154 AGTATCCGAAAAATTCCCTTTACG 57.327 37.500 0.00 0.00 0.00 3.18
4987 5125 8.277490 AGAAGTATCCGAAAAATTCCCTTTAC 57.723 34.615 0.00 0.00 0.00 2.01
4988 5126 7.555195 GGAGAAGTATCCGAAAAATTCCCTTTA 59.445 37.037 0.00 0.00 0.00 1.85
4989 5127 6.377429 GGAGAAGTATCCGAAAAATTCCCTTT 59.623 38.462 0.00 0.00 0.00 3.11
4990 5128 5.886474 GGAGAAGTATCCGAAAAATTCCCTT 59.114 40.000 0.00 0.00 0.00 3.95
4991 5129 5.045140 TGGAGAAGTATCCGAAAAATTCCCT 60.045 40.000 0.00 0.00 42.77 4.20
4992 5130 5.190677 TGGAGAAGTATCCGAAAAATTCCC 58.809 41.667 0.00 0.00 42.77 3.97
4993 5131 6.542370 TGATGGAGAAGTATCCGAAAAATTCC 59.458 38.462 0.00 0.00 42.77 3.01
4994 5132 7.410485 GTGATGGAGAAGTATCCGAAAAATTC 58.590 38.462 0.00 0.00 42.77 2.17
4995 5133 6.318900 GGTGATGGAGAAGTATCCGAAAAATT 59.681 38.462 0.00 0.00 42.77 1.82
4996 5134 5.823045 GGTGATGGAGAAGTATCCGAAAAAT 59.177 40.000 0.00 0.00 42.77 1.82
4997 5135 5.183228 GGTGATGGAGAAGTATCCGAAAAA 58.817 41.667 0.00 0.00 42.77 1.94
4998 5136 4.224147 TGGTGATGGAGAAGTATCCGAAAA 59.776 41.667 0.00 0.00 42.77 2.29
4999 5137 3.772572 TGGTGATGGAGAAGTATCCGAAA 59.227 43.478 0.00 0.00 42.77 3.46
5000 5138 3.371034 TGGTGATGGAGAAGTATCCGAA 58.629 45.455 0.00 0.00 42.77 4.30
5001 5139 3.026707 TGGTGATGGAGAAGTATCCGA 57.973 47.619 0.00 0.00 42.77 4.55
5002 5140 3.819564 TTGGTGATGGAGAAGTATCCG 57.180 47.619 0.00 0.00 42.77 4.18
5003 5141 7.410120 AAATTTTGGTGATGGAGAAGTATCC 57.590 36.000 0.00 0.00 40.03 2.59
5004 5142 9.956720 CATAAATTTTGGTGATGGAGAAGTATC 57.043 33.333 0.00 0.00 0.00 2.24
5005 5143 9.699410 TCATAAATTTTGGTGATGGAGAAGTAT 57.301 29.630 0.00 0.00 0.00 2.12
5006 5144 9.527157 TTCATAAATTTTGGTGATGGAGAAGTA 57.473 29.630 0.00 0.00 0.00 2.24
5007 5145 8.421249 TTCATAAATTTTGGTGATGGAGAAGT 57.579 30.769 0.00 0.00 0.00 3.01
5008 5146 9.709495 TTTTCATAAATTTTGGTGATGGAGAAG 57.291 29.630 0.00 0.00 0.00 2.85
5032 5170 8.995027 TGTGCTATAGGAATGATGGTATTTTT 57.005 30.769 1.04 0.00 0.00 1.94
5033 5171 9.017509 CATGTGCTATAGGAATGATGGTATTTT 57.982 33.333 1.04 0.00 0.00 1.82
5034 5172 8.166061 ACATGTGCTATAGGAATGATGGTATTT 58.834 33.333 17.10 0.00 0.00 1.40
5035 5173 7.609146 CACATGTGCTATAGGAATGATGGTATT 59.391 37.037 13.94 0.00 0.00 1.89
5036 5174 7.108194 CACATGTGCTATAGGAATGATGGTAT 58.892 38.462 13.94 0.00 0.00 2.73
5037 5175 6.466812 CACATGTGCTATAGGAATGATGGTA 58.533 40.000 13.94 0.00 0.00 3.25
5038 5176 5.311265 CACATGTGCTATAGGAATGATGGT 58.689 41.667 13.94 1.78 0.00 3.55
5039 5177 5.874895 CACATGTGCTATAGGAATGATGG 57.125 43.478 13.94 7.58 0.00 3.51
5054 5192 2.664851 ACGACGTGGGCACATGTG 60.665 61.111 20.89 21.83 46.46 3.21
5056 5194 4.088762 GCACGACGTGGGCACATG 62.089 66.667 27.86 6.63 39.55 3.21
5057 5195 4.617520 TGCACGACGTGGGCACAT 62.618 61.111 27.86 0.00 33.64 3.21
5058 5196 4.840005 TTGCACGACGTGGGCACA 62.840 61.111 27.86 15.05 37.26 4.57
5059 5197 2.600122 TTTTTGCACGACGTGGGCAC 62.600 55.000 27.86 12.62 37.26 5.01
5060 5198 2.407428 TTTTTGCACGACGTGGGCA 61.407 52.632 27.86 18.45 33.64 5.36
5061 5199 2.409651 TTTTTGCACGACGTGGGC 59.590 55.556 27.86 16.00 33.64 5.36
5080 5218 5.687285 GGAGCGCGATAAAATCATGATTTTT 59.313 36.000 37.92 28.04 45.67 1.94
5082 5220 4.611355 CGGAGCGCGATAAAATCATGATTT 60.611 41.667 24.83 24.83 42.35 2.17
5083 5221 3.120546 CGGAGCGCGATAAAATCATGATT 60.121 43.478 15.36 15.36 0.00 2.57
5084 5222 2.413112 CGGAGCGCGATAAAATCATGAT 59.587 45.455 12.10 1.18 0.00 2.45
5085 5223 1.792367 CGGAGCGCGATAAAATCATGA 59.208 47.619 12.10 0.00 0.00 3.07
5086 5224 1.792367 TCGGAGCGCGATAAAATCATG 59.208 47.619 12.10 0.00 0.00 3.07
5087 5225 2.061773 CTCGGAGCGCGATAAAATCAT 58.938 47.619 12.10 0.00 0.00 2.45
5088 5226 1.202371 ACTCGGAGCGCGATAAAATCA 60.202 47.619 12.10 0.00 0.00 2.57
5089 5227 1.488527 ACTCGGAGCGCGATAAAATC 58.511 50.000 12.10 0.00 0.00 2.17
5090 5228 2.787601 TACTCGGAGCGCGATAAAAT 57.212 45.000 12.10 0.00 0.00 1.82
5091 5229 2.787601 ATACTCGGAGCGCGATAAAA 57.212 45.000 12.10 0.00 0.00 1.52
5092 5230 2.787601 AATACTCGGAGCGCGATAAA 57.212 45.000 12.10 0.00 0.00 1.40
5093 5231 2.787601 AAATACTCGGAGCGCGATAA 57.212 45.000 12.10 0.00 0.00 1.75
5094 5232 2.810274 ACTAAATACTCGGAGCGCGATA 59.190 45.455 12.10 0.00 0.00 2.92
5095 5233 1.607628 ACTAAATACTCGGAGCGCGAT 59.392 47.619 12.10 1.23 0.00 4.58
5096 5234 1.019673 ACTAAATACTCGGAGCGCGA 58.980 50.000 12.10 0.00 0.00 5.87
5097 5235 2.675767 TACTAAATACTCGGAGCGCG 57.324 50.000 0.00 0.00 0.00 6.86
5098 5236 6.805271 TCAATATTACTAAATACTCGGAGCGC 59.195 38.462 4.58 0.00 30.42 5.92
5099 5237 7.007188 CGTCAATATTACTAAATACTCGGAGCG 59.993 40.741 4.58 0.00 30.42 5.03
5100 5238 7.201333 GCGTCAATATTACTAAATACTCGGAGC 60.201 40.741 4.58 0.00 30.42 4.70
5101 5239 8.021973 AGCGTCAATATTACTAAATACTCGGAG 58.978 37.037 2.83 2.83 30.42 4.63
5102 5240 7.806487 CAGCGTCAATATTACTAAATACTCGGA 59.194 37.037 0.00 0.00 30.42 4.55
5103 5241 7.410513 GCAGCGTCAATATTACTAAATACTCGG 60.411 40.741 0.00 0.00 30.42 4.63
5104 5242 7.114388 TGCAGCGTCAATATTACTAAATACTCG 59.886 37.037 0.00 0.00 30.42 4.18
5105 5243 8.294341 TGCAGCGTCAATATTACTAAATACTC 57.706 34.615 0.00 0.00 30.42 2.59
5106 5244 8.833231 ATGCAGCGTCAATATTACTAAATACT 57.167 30.769 0.00 0.00 30.42 2.12
5107 5245 9.318041 CAATGCAGCGTCAATATTACTAAATAC 57.682 33.333 0.00 0.00 30.42 1.89
5108 5246 9.051679 ACAATGCAGCGTCAATATTACTAAATA 57.948 29.630 0.00 0.00 32.20 1.40
5109 5247 7.930217 ACAATGCAGCGTCAATATTACTAAAT 58.070 30.769 0.00 0.00 0.00 1.40
5110 5248 7.315247 ACAATGCAGCGTCAATATTACTAAA 57.685 32.000 0.00 0.00 0.00 1.85
5111 5249 6.918892 ACAATGCAGCGTCAATATTACTAA 57.081 33.333 0.00 0.00 0.00 2.24
5112 5250 6.918892 AACAATGCAGCGTCAATATTACTA 57.081 33.333 0.00 0.00 0.00 1.82
5113 5251 5.818136 AACAATGCAGCGTCAATATTACT 57.182 34.783 0.00 0.00 0.00 2.24
5114 5252 5.907391 GGTAACAATGCAGCGTCAATATTAC 59.093 40.000 0.00 0.00 0.00 1.89
5115 5253 5.277106 CGGTAACAATGCAGCGTCAATATTA 60.277 40.000 0.00 0.00 0.00 0.98
5116 5254 4.495679 CGGTAACAATGCAGCGTCAATATT 60.496 41.667 0.00 0.00 0.00 1.28
5117 5255 3.002246 CGGTAACAATGCAGCGTCAATAT 59.998 43.478 0.00 0.00 0.00 1.28
5118 5256 2.350192 CGGTAACAATGCAGCGTCAATA 59.650 45.455 0.00 0.00 0.00 1.90
5119 5257 1.130373 CGGTAACAATGCAGCGTCAAT 59.870 47.619 0.00 0.00 0.00 2.57
5120 5258 0.515127 CGGTAACAATGCAGCGTCAA 59.485 50.000 0.00 0.00 0.00 3.18
5121 5259 1.906994 GCGGTAACAATGCAGCGTCA 61.907 55.000 8.43 0.00 37.92 4.35
5122 5260 1.226018 GCGGTAACAATGCAGCGTC 60.226 57.895 8.43 0.00 37.92 5.19
5123 5261 1.963855 TGCGGTAACAATGCAGCGT 60.964 52.632 8.43 0.00 35.27 5.07
5124 5262 2.866750 TGCGGTAACAATGCAGCG 59.133 55.556 0.00 3.19 35.27 5.18
5127 5265 0.515127 CGTTCTGCGGTAACAATGCA 59.485 50.000 0.00 0.00 36.85 3.96
5128 5266 0.515564 ACGTTCTGCGGTAACAATGC 59.484 50.000 0.00 0.00 46.52 3.56
5129 5267 2.066262 AGACGTTCTGCGGTAACAATG 58.934 47.619 0.00 0.00 46.52 2.82
5130 5268 2.450609 AGACGTTCTGCGGTAACAAT 57.549 45.000 0.00 0.00 46.52 2.71
5131 5269 2.294233 AGTAGACGTTCTGCGGTAACAA 59.706 45.455 0.00 0.00 46.52 2.83
5132 5270 1.881973 AGTAGACGTTCTGCGGTAACA 59.118 47.619 0.00 0.00 46.52 2.41
5133 5271 2.626088 AGTAGACGTTCTGCGGTAAC 57.374 50.000 0.00 0.00 46.52 2.50
5134 5272 2.420022 GGTAGTAGACGTTCTGCGGTAA 59.580 50.000 0.00 0.00 46.52 2.85
5135 5273 2.009774 GGTAGTAGACGTTCTGCGGTA 58.990 52.381 0.00 0.00 46.52 4.02
5136 5274 0.807496 GGTAGTAGACGTTCTGCGGT 59.193 55.000 0.00 0.00 46.52 5.68
5137 5275 0.247974 CGGTAGTAGACGTTCTGCGG 60.248 60.000 0.00 0.00 46.52 5.69
5138 5276 0.445436 ACGGTAGTAGACGTTCTGCG 59.555 55.000 0.00 0.00 40.99 5.18
5139 5277 1.198637 ACACGGTAGTAGACGTTCTGC 59.801 52.381 0.00 0.00 42.04 4.26
5140 5278 2.481568 TGACACGGTAGTAGACGTTCTG 59.518 50.000 0.00 0.00 42.04 3.02
5141 5279 2.771089 TGACACGGTAGTAGACGTTCT 58.229 47.619 0.00 0.00 42.04 3.01
5142 5280 3.678662 GATGACACGGTAGTAGACGTTC 58.321 50.000 0.00 0.00 42.04 3.95
5143 5281 2.094894 CGATGACACGGTAGTAGACGTT 59.905 50.000 0.00 0.00 42.04 3.99
5144 5282 1.662629 CGATGACACGGTAGTAGACGT 59.337 52.381 0.00 0.00 45.25 4.34
5145 5283 1.594034 GCGATGACACGGTAGTAGACG 60.594 57.143 0.00 0.00 0.00 4.18
5146 5284 1.268437 GGCGATGACACGGTAGTAGAC 60.268 57.143 0.00 0.00 0.00 2.59
5147 5285 1.019673 GGCGATGACACGGTAGTAGA 58.980 55.000 0.00 0.00 0.00 2.59
5148 5286 0.316772 CGGCGATGACACGGTAGTAG 60.317 60.000 0.00 0.00 0.00 2.57
5149 5287 1.026182 ACGGCGATGACACGGTAGTA 61.026 55.000 16.62 0.00 0.00 1.82
5150 5288 2.262471 GACGGCGATGACACGGTAGT 62.262 60.000 16.62 0.00 0.00 2.73
5151 5289 1.585521 GACGGCGATGACACGGTAG 60.586 63.158 16.62 0.00 0.00 3.18
5152 5290 2.486504 GACGGCGATGACACGGTA 59.513 61.111 16.62 0.00 0.00 4.02
5153 5291 4.430765 GGACGGCGATGACACGGT 62.431 66.667 16.62 0.00 0.00 4.83
5155 5293 4.771356 ACGGACGGCGATGACACG 62.771 66.667 16.62 10.76 0.00 4.49
5156 5294 3.179265 CACGGACGGCGATGACAC 61.179 66.667 16.62 0.00 0.00 3.67
5157 5295 3.336715 CTCACGGACGGCGATGACA 62.337 63.158 16.62 0.00 0.00 3.58
5158 5296 2.579787 CTCACGGACGGCGATGAC 60.580 66.667 16.62 1.47 0.00 3.06
5159 5297 3.822192 CCTCACGGACGGCGATGA 61.822 66.667 16.62 10.65 0.00 2.92
5160 5298 4.873129 CCCTCACGGACGGCGATG 62.873 72.222 16.62 6.38 0.00 3.84
5205 5343 0.392863 TGGTGGCATGTCCGAAGATG 60.393 55.000 0.00 0.00 37.80 2.90
5206 5344 0.392998 GTGGTGGCATGTCCGAAGAT 60.393 55.000 0.00 0.00 37.80 2.40
5207 5345 1.003839 GTGGTGGCATGTCCGAAGA 60.004 57.895 0.00 0.00 37.80 2.87
5208 5346 1.302431 TGTGGTGGCATGTCCGAAG 60.302 57.895 0.00 0.00 37.80 3.79
5209 5347 1.599518 GTGTGGTGGCATGTCCGAA 60.600 57.895 0.00 0.00 37.80 4.30
5210 5348 2.031919 GTGTGGTGGCATGTCCGA 59.968 61.111 0.00 0.00 37.80 4.55
5211 5349 3.055719 GGTGTGGTGGCATGTCCG 61.056 66.667 0.00 0.00 37.80 4.79
5212 5350 2.115052 TGGTGTGGTGGCATGTCC 59.885 61.111 0.00 0.00 0.00 4.02
5213 5351 2.268076 GGTGGTGTGGTGGCATGTC 61.268 63.158 0.00 0.00 0.00 3.06
5214 5352 2.203480 GGTGGTGTGGTGGCATGT 60.203 61.111 0.00 0.00 0.00 3.21
5215 5353 2.990967 GGGTGGTGTGGTGGCATG 60.991 66.667 0.00 0.00 0.00 4.06
5216 5354 3.080158 TTGGGTGGTGTGGTGGCAT 62.080 57.895 0.00 0.00 0.00 4.40
5217 5355 3.744155 TTGGGTGGTGTGGTGGCA 61.744 61.111 0.00 0.00 0.00 4.92
5218 5356 3.223589 GTTGGGTGGTGTGGTGGC 61.224 66.667 0.00 0.00 0.00 5.01
5219 5357 1.152567 ATGTTGGGTGGTGTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
5220 5358 0.754957 ACATGTTGGGTGGTGTGGTG 60.755 55.000 0.00 0.00 0.00 4.17
5221 5359 0.847373 TACATGTTGGGTGGTGTGGT 59.153 50.000 2.30 0.00 0.00 4.16
5222 5360 1.818060 CATACATGTTGGGTGGTGTGG 59.182 52.381 2.30 0.00 0.00 4.17
5223 5361 2.749076 CTCATACATGTTGGGTGGTGTG 59.251 50.000 2.30 0.00 0.00 3.82
5224 5362 2.290896 CCTCATACATGTTGGGTGGTGT 60.291 50.000 2.30 0.00 0.00 4.16
5225 5363 2.368439 CCTCATACATGTTGGGTGGTG 58.632 52.381 2.30 0.00 0.00 4.17
5226 5364 1.284785 CCCTCATACATGTTGGGTGGT 59.715 52.381 2.30 0.00 37.63 4.16
5227 5365 2.023788 GCCCTCATACATGTTGGGTGG 61.024 57.143 19.87 14.32 41.28 4.61
5228 5366 1.392589 GCCCTCATACATGTTGGGTG 58.607 55.000 19.87 9.58 41.28 4.61
5229 5367 0.258774 GGCCCTCATACATGTTGGGT 59.741 55.000 19.87 0.00 41.28 4.51
5230 5368 0.468029 GGGCCCTCATACATGTTGGG 60.468 60.000 17.04 12.14 41.73 4.12
5231 5369 0.819259 CGGGCCCTCATACATGTTGG 60.819 60.000 22.43 1.74 0.00 3.77
5232 5370 0.819259 CCGGGCCCTCATACATGTTG 60.819 60.000 22.43 2.55 0.00 3.33
5233 5371 1.279025 ACCGGGCCCTCATACATGTT 61.279 55.000 22.43 0.00 0.00 2.71
5234 5372 1.692749 ACCGGGCCCTCATACATGT 60.693 57.895 22.43 2.69 0.00 3.21
5235 5373 1.227943 CACCGGGCCCTCATACATG 60.228 63.158 22.43 0.22 0.00 3.21
5236 5374 3.120086 GCACCGGGCCCTCATACAT 62.120 63.158 22.43 0.00 36.11 2.29
5237 5375 3.792736 GCACCGGGCCCTCATACA 61.793 66.667 22.43 0.00 36.11 2.29
5238 5376 4.910585 CGCACCGGGCCCTCATAC 62.911 72.222 22.43 4.29 40.31 2.39
5255 5393 3.499737 CAATGCCACCGGAGCGTC 61.500 66.667 9.46 0.00 0.00 5.19
5258 5396 2.124736 TAGCAATGCCACCGGAGC 60.125 61.111 9.46 11.93 0.00 4.70
5259 5397 3.813596 GTAGCAATGCCACCGGAG 58.186 61.111 9.46 0.00 0.00 4.63
5599 7071 2.361610 CTGGCCCGGATGTTGCTT 60.362 61.111 0.73 0.00 0.00 3.91
5733 11676 1.381165 GGAAGTGTTGTGGCGGTTGT 61.381 55.000 0.00 0.00 0.00 3.32
5870 13813 5.667539 TTTCACACTTTTTGGTGATGGAA 57.332 34.783 1.52 0.79 43.01 3.53
5967 14583 5.470368 ACGATGCAGCGTCAATATTACTAT 58.530 37.500 26.39 0.00 41.22 2.12
6072 17552 4.531426 GGGGTGGTGTGGTGGCAA 62.531 66.667 0.00 0.00 0.00 4.52
6632 26649 2.757868 CAACAAGGTGAAAAGGTCCACA 59.242 45.455 0.00 0.00 35.13 4.17
7307 28617 1.300620 CAGTTTGACGGCGTCAGGA 60.301 57.895 36.94 27.82 43.69 3.86
7612 28973 0.179156 CCATGCTTTCGTGGTCATGC 60.179 55.000 0.00 0.00 43.02 4.06
7660 29021 2.028476 TCAGTCCGGTACTTTGGTGATG 60.028 50.000 0.00 0.00 35.76 3.07
7661 29022 2.253610 TCAGTCCGGTACTTTGGTGAT 58.746 47.619 0.00 0.00 35.76 3.06
7665 29026 2.161609 GCAATTCAGTCCGGTACTTTGG 59.838 50.000 0.00 0.00 35.76 3.28
7756 29118 1.723542 GACCGATTCGCAGCATATCTG 59.276 52.381 0.00 0.00 45.62 2.90
7768 29130 2.908626 GACAAACAAATGCGACCGATTC 59.091 45.455 0.00 0.00 0.00 2.52
7786 29148 1.056660 GTGAAACAGGGAGAGGGACA 58.943 55.000 0.00 0.00 36.32 4.02
7811 29173 0.899717 GGATCAACTTGCCCTTGCCA 60.900 55.000 0.00 0.00 36.33 4.92
7812 29174 0.899717 TGGATCAACTTGCCCTTGCC 60.900 55.000 0.00 0.00 36.33 4.52
7813 29175 0.529378 CTGGATCAACTTGCCCTTGC 59.471 55.000 0.00 0.00 38.26 4.01
7821 29183 6.068853 TCCCATAGGAATTTCTGGATCAACTT 60.069 38.462 0.00 0.00 40.08 2.66
7942 29305 0.107165 ATAGCCCTGGGAGAAAACGC 60.107 55.000 19.27 0.00 0.00 4.84
7953 29316 1.859302 CTAGCTCCCCTATAGCCCTG 58.141 60.000 0.00 0.00 41.02 4.45
7960 29323 1.124477 GCCAGTGCTAGCTCCCCTAT 61.124 60.000 17.23 0.00 33.53 2.57
7979 29342 2.093764 AGGAGACCATCAAGAAGAAGCG 60.094 50.000 0.00 0.00 0.00 4.68
8002 29365 6.369340 GCTAGATACTCACAGCGATAGTAAGA 59.631 42.308 0.00 0.00 39.35 2.10
8094 29557 7.056635 CACTAACATTTGGATCATACTCCCTT 58.943 38.462 0.00 0.00 34.12 3.95
8127 29590 2.346766 TGAACAAGCATGGTGAGTGT 57.653 45.000 0.00 0.00 0.00 3.55
8245 29781 6.907212 GCAATTCACAGAACATATTCTTACCG 59.093 38.462 0.00 0.00 42.91 4.02
8255 31970 7.383029 CACTACAATTTGCAATTCACAGAACAT 59.617 33.333 0.00 0.00 0.00 2.71
8286 32001 4.860907 CCATCTTGCAGATTGTAGTTTTGC 59.139 41.667 0.00 0.00 31.32 3.68
8289 32004 4.019174 CCCCATCTTGCAGATTGTAGTTT 58.981 43.478 0.00 0.00 31.32 2.66
8325 32040 4.744570 TCTGTAAGCTACCACAATTCTCG 58.255 43.478 0.00 0.00 0.00 4.04
8417 32136 0.250234 GAACCTACCGGTAACCACCC 59.750 60.000 16.65 0.00 44.73 4.61
8470 32189 4.796110 ATGCACACCCCTAAGTATCAAT 57.204 40.909 0.00 0.00 0.00 2.57
8475 32194 2.026636 GTCCAATGCACACCCCTAAGTA 60.027 50.000 0.00 0.00 0.00 2.24
8501 32221 9.601217 AGATAGGTACACTCACATTTTGATAAC 57.399 33.333 0.00 0.00 32.17 1.89
8514 32234 6.205270 GGCTGAAGTAGTAGATAGGTACACTC 59.795 46.154 0.00 0.00 0.00 3.51
8531 32251 4.748277 TTAGCGGTAAATAGGCTGAAGT 57.252 40.909 4.24 0.00 37.62 3.01
8734 32456 7.041107 CACAACTTCCTTCCAATTTGAGAAAA 58.959 34.615 0.00 0.00 0.00 2.29
8771 32493 7.555914 TGCAATTTAGATCATTACTGCCAAGTA 59.444 33.333 0.00 0.00 37.88 2.24
8827 32549 6.023435 TGACGTATTTACATATCCGTATCGC 58.977 40.000 0.00 0.00 0.00 4.58
8851 32573 3.941483 CCGTATTGGCACTTCTCAGAAAT 59.059 43.478 0.00 0.00 0.00 2.17
8863 32585 1.513858 AACCTATCCCCGTATTGGCA 58.486 50.000 0.00 0.00 35.87 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.