Multiple sequence alignment - TraesCS3A01G436100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G436100 chr3A 100.000 3026 0 0 1 3026 679693753 679696778 0.000000e+00 5589.0
1 TraesCS3A01G436100 chr3B 91.780 2579 94 52 521 3024 718849524 718852059 0.000000e+00 3480.0
2 TraesCS3A01G436100 chr3D 92.649 2299 80 29 521 2798 543007941 543010171 0.000000e+00 3227.0
3 TraesCS3A01G436100 chr1D 85.551 526 47 9 1 524 53229388 53228890 9.610000e-145 523.0
4 TraesCS3A01G436100 chr7B 85.656 244 23 5 281 515 36966453 36966213 2.330000e-61 246.0
5 TraesCS3A01G436100 chr7B 100.000 30 0 0 17 46 36966479 36966450 4.210000e-04 56.5
6 TraesCS3A01G436100 chr5D 89.071 183 17 3 1336 1516 539014529 539014710 1.090000e-54 224.0
7 TraesCS3A01G436100 chr2D 87.634 186 15 7 1336 1516 520537008 520536826 3.060000e-50 209.0
8 TraesCS3A01G436100 chr6D 93.000 100 5 2 2807 2904 292073458 292073359 8.740000e-31 145.0
9 TraesCS3A01G436100 chr6D 95.349 86 3 1 2808 2892 292073372 292073457 5.260000e-28 135.0
10 TraesCS3A01G436100 chr2B 92.632 95 5 2 2807 2900 764537698 764537605 5.260000e-28 135.0
11 TraesCS3A01G436100 chr1B 94.382 89 4 1 2808 2895 493871965 493871877 5.260000e-28 135.0
12 TraesCS3A01G436100 chr4B 94.318 88 4 1 2807 2893 131712331 131712244 1.890000e-27 134.0
13 TraesCS3A01G436100 chr4B 82.353 85 15 0 406 490 557991607 557991691 1.160000e-09 75.0
14 TraesCS3A01G436100 chr5B 94.253 87 4 1 2808 2893 215889768 215889682 6.810000e-27 132.0
15 TraesCS3A01G436100 chr5B 92.391 92 5 2 2805 2894 706306968 706306877 2.450000e-26 130.0
16 TraesCS3A01G436100 chr5B 87.273 110 14 0 406 515 479637415 479637524 3.170000e-25 126.0
17 TraesCS3A01G436100 chr1A 92.308 91 6 1 2807 2896 298608492 298608402 8.810000e-26 128.0
18 TraesCS3A01G436100 chr5A 87.273 110 14 0 406 515 535653090 535653199 3.170000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G436100 chr3A 679693753 679696778 3025 False 5589 5589 100.000 1 3026 1 chr3A.!!$F1 3025
1 TraesCS3A01G436100 chr3B 718849524 718852059 2535 False 3480 3480 91.780 521 3024 1 chr3B.!!$F1 2503
2 TraesCS3A01G436100 chr3D 543007941 543010171 2230 False 3227 3227 92.649 521 2798 1 chr3D.!!$F1 2277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.037326 TACTTGAGGCCTTCTGCGTG 60.037 55.0 6.77 0.0 42.61 5.34 F
255 256 0.037326 CTTGAGGCCTTCTGCGTGTA 60.037 55.0 6.77 0.0 42.61 2.90 F
346 347 0.251341 GACATTGACAGGTGGGCCTT 60.251 55.0 4.53 0.0 44.18 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1971 1.522806 GTGCTGTTCGTGGTGGTGA 60.523 57.895 0.0 0.00 0.00 4.02 R
1957 2005 2.436292 GTCCTCCTGCTGCTGCTG 60.436 66.667 17.0 15.58 40.48 4.41 R
2257 2309 1.010046 AGGATGACCCTGAATCCCTGA 59.990 52.381 0.0 0.00 45.61 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.770097 CTAACATGTTGTTCATATCCTACTGAT 57.230 33.333 21.42 0.00 40.22 2.90
29 30 9.770097 ACATGTTGTTCATATCCTACTGATTAG 57.230 33.333 0.00 0.00 34.67 1.73
30 31 9.770097 CATGTTGTTCATATCCTACTGATTAGT 57.230 33.333 0.00 0.00 36.63 2.24
31 32 9.770097 ATGTTGTTCATATCCTACTGATTAGTG 57.230 33.333 0.00 0.00 35.26 2.74
32 33 8.204160 TGTTGTTCATATCCTACTGATTAGTGG 58.796 37.037 0.00 0.00 37.78 4.00
33 34 6.759272 TGTTCATATCCTACTGATTAGTGGC 58.241 40.000 0.00 0.00 37.78 5.01
34 35 6.166982 GTTCATATCCTACTGATTAGTGGCC 58.833 44.000 0.00 0.00 37.78 5.36
35 36 5.655394 TCATATCCTACTGATTAGTGGCCT 58.345 41.667 3.32 0.00 37.78 5.19
36 37 5.717178 TCATATCCTACTGATTAGTGGCCTC 59.283 44.000 3.32 0.00 37.78 4.70
37 38 3.398318 TCCTACTGATTAGTGGCCTCA 57.602 47.619 3.32 0.00 37.78 3.86
38 39 3.031736 TCCTACTGATTAGTGGCCTCAC 58.968 50.000 3.32 0.00 43.93 3.51
39 40 2.103263 CCTACTGATTAGTGGCCTCACC 59.897 54.545 3.32 0.00 44.64 4.02
40 41 0.912486 ACTGATTAGTGGCCTCACCC 59.088 55.000 3.32 0.00 44.64 4.61
41 42 1.207791 CTGATTAGTGGCCTCACCCT 58.792 55.000 3.32 0.00 44.64 4.34
42 43 1.561542 CTGATTAGTGGCCTCACCCTT 59.438 52.381 3.32 0.00 44.64 3.95
43 44 2.771943 CTGATTAGTGGCCTCACCCTTA 59.228 50.000 3.32 0.00 44.64 2.69
44 45 3.186283 TGATTAGTGGCCTCACCCTTAA 58.814 45.455 3.32 0.00 44.64 1.85
45 46 3.589735 TGATTAGTGGCCTCACCCTTAAA 59.410 43.478 3.32 0.00 44.64 1.52
46 47 4.229582 TGATTAGTGGCCTCACCCTTAAAT 59.770 41.667 3.32 0.00 44.64 1.40
47 48 4.668138 TTAGTGGCCTCACCCTTAAATT 57.332 40.909 3.32 0.00 44.64 1.82
48 49 5.782677 TTAGTGGCCTCACCCTTAAATTA 57.217 39.130 3.32 0.00 44.64 1.40
49 50 3.964411 AGTGGCCTCACCCTTAAATTAC 58.036 45.455 3.32 0.00 44.64 1.89
50 51 3.021695 GTGGCCTCACCCTTAAATTACC 58.978 50.000 3.32 0.00 37.92 2.85
51 52 2.024751 TGGCCTCACCCTTAAATTACCC 60.025 50.000 3.32 0.00 37.83 3.69
52 53 2.024751 GGCCTCACCCTTAAATTACCCA 60.025 50.000 0.00 0.00 0.00 4.51
53 54 3.021695 GCCTCACCCTTAAATTACCCAC 58.978 50.000 0.00 0.00 0.00 4.61
54 55 3.308904 GCCTCACCCTTAAATTACCCACT 60.309 47.826 0.00 0.00 0.00 4.00
55 56 4.080186 GCCTCACCCTTAAATTACCCACTA 60.080 45.833 0.00 0.00 0.00 2.74
56 57 5.681639 CCTCACCCTTAAATTACCCACTAG 58.318 45.833 0.00 0.00 0.00 2.57
57 58 5.427481 CCTCACCCTTAAATTACCCACTAGA 59.573 44.000 0.00 0.00 0.00 2.43
58 59 6.303903 TCACCCTTAAATTACCCACTAGAC 57.696 41.667 0.00 0.00 0.00 2.59
59 60 5.786457 TCACCCTTAAATTACCCACTAGACA 59.214 40.000 0.00 0.00 0.00 3.41
60 61 6.445786 TCACCCTTAAATTACCCACTAGACAT 59.554 38.462 0.00 0.00 0.00 3.06
61 62 7.624478 TCACCCTTAAATTACCCACTAGACATA 59.376 37.037 0.00 0.00 0.00 2.29
62 63 8.437575 CACCCTTAAATTACCCACTAGACATAT 58.562 37.037 0.00 0.00 0.00 1.78
63 64 8.437575 ACCCTTAAATTACCCACTAGACATATG 58.562 37.037 0.00 0.00 0.00 1.78
64 65 8.656806 CCCTTAAATTACCCACTAGACATATGA 58.343 37.037 10.38 0.00 0.00 2.15
65 66 9.712305 CCTTAAATTACCCACTAGACATATGAG 57.288 37.037 10.38 0.00 0.00 2.90
66 67 9.209175 CTTAAATTACCCACTAGACATATGAGC 57.791 37.037 10.38 0.81 0.00 4.26
67 68 5.746990 ATTACCCACTAGACATATGAGCC 57.253 43.478 10.38 0.00 0.00 4.70
68 69 3.336509 ACCCACTAGACATATGAGCCT 57.663 47.619 10.38 6.05 0.00 4.58
69 70 3.658725 ACCCACTAGACATATGAGCCTT 58.341 45.455 10.38 0.00 0.00 4.35
70 71 4.040755 ACCCACTAGACATATGAGCCTTT 58.959 43.478 10.38 0.00 0.00 3.11
71 72 4.101741 ACCCACTAGACATATGAGCCTTTC 59.898 45.833 10.38 0.00 0.00 2.62
72 73 4.346418 CCCACTAGACATATGAGCCTTTCT 59.654 45.833 10.38 3.11 0.00 2.52
73 74 5.540337 CCCACTAGACATATGAGCCTTTCTA 59.460 44.000 10.38 4.17 0.00 2.10
74 75 6.451393 CCACTAGACATATGAGCCTTTCTAC 58.549 44.000 10.38 0.00 0.00 2.59
75 76 6.146216 CACTAGACATATGAGCCTTTCTACG 58.854 44.000 10.38 2.71 0.00 3.51
76 77 5.828859 ACTAGACATATGAGCCTTTCTACGT 59.171 40.000 10.38 0.00 0.00 3.57
77 78 6.996879 ACTAGACATATGAGCCTTTCTACGTA 59.003 38.462 10.38 0.00 0.00 3.57
78 79 6.710597 AGACATATGAGCCTTTCTACGTAA 57.289 37.500 10.38 0.00 0.00 3.18
79 80 7.291411 AGACATATGAGCCTTTCTACGTAAT 57.709 36.000 10.38 0.00 0.00 1.89
80 81 7.727181 AGACATATGAGCCTTTCTACGTAATT 58.273 34.615 10.38 0.00 0.00 1.40
81 82 7.653713 AGACATATGAGCCTTTCTACGTAATTG 59.346 37.037 10.38 0.00 0.00 2.32
82 83 7.497595 ACATATGAGCCTTTCTACGTAATTGA 58.502 34.615 10.38 0.00 0.00 2.57
83 84 7.438459 ACATATGAGCCTTTCTACGTAATTGAC 59.562 37.037 10.38 0.00 0.00 3.18
84 85 4.501071 TGAGCCTTTCTACGTAATTGACC 58.499 43.478 0.00 0.00 0.00 4.02
85 86 4.020928 TGAGCCTTTCTACGTAATTGACCA 60.021 41.667 0.00 0.00 0.00 4.02
86 87 4.901868 AGCCTTTCTACGTAATTGACCAA 58.098 39.130 0.00 0.00 0.00 3.67
87 88 4.694037 AGCCTTTCTACGTAATTGACCAAC 59.306 41.667 0.00 0.00 0.00 3.77
88 89 4.453136 GCCTTTCTACGTAATTGACCAACA 59.547 41.667 0.00 0.00 0.00 3.33
89 90 5.616204 GCCTTTCTACGTAATTGACCAACAC 60.616 44.000 0.00 0.00 0.00 3.32
90 91 5.467399 CCTTTCTACGTAATTGACCAACACA 59.533 40.000 0.00 0.00 0.00 3.72
91 92 6.017770 CCTTTCTACGTAATTGACCAACACAA 60.018 38.462 0.00 0.00 0.00 3.33
92 93 6.922247 TTCTACGTAATTGACCAACACAAA 57.078 33.333 0.00 0.00 0.00 2.83
93 94 6.289745 TCTACGTAATTGACCAACACAAAC 57.710 37.500 0.00 0.00 0.00 2.93
94 95 6.050432 TCTACGTAATTGACCAACACAAACT 58.950 36.000 0.00 0.00 0.00 2.66
95 96 5.570234 ACGTAATTGACCAACACAAACTT 57.430 34.783 0.00 0.00 0.00 2.66
96 97 5.336744 ACGTAATTGACCAACACAAACTTG 58.663 37.500 0.00 0.00 0.00 3.16
97 98 5.124138 ACGTAATTGACCAACACAAACTTGA 59.876 36.000 0.00 0.00 0.00 3.02
98 99 5.454232 CGTAATTGACCAACACAAACTTGAC 59.546 40.000 0.00 0.00 0.00 3.18
99 100 5.398603 AATTGACCAACACAAACTTGACA 57.601 34.783 0.00 0.00 0.00 3.58
100 101 4.433186 TTGACCAACACAAACTTGACAG 57.567 40.909 0.00 0.00 0.00 3.51
101 102 2.163412 TGACCAACACAAACTTGACAGC 59.837 45.455 0.00 0.00 0.00 4.40
102 103 1.476488 ACCAACACAAACTTGACAGCC 59.524 47.619 0.00 0.00 0.00 4.85
103 104 1.750778 CCAACACAAACTTGACAGCCT 59.249 47.619 0.00 0.00 0.00 4.58
104 105 2.948979 CCAACACAAACTTGACAGCCTA 59.051 45.455 0.00 0.00 0.00 3.93
105 106 3.569701 CCAACACAAACTTGACAGCCTAT 59.430 43.478 0.00 0.00 0.00 2.57
106 107 4.037923 CCAACACAAACTTGACAGCCTATT 59.962 41.667 0.00 0.00 0.00 1.73
107 108 5.215160 CAACACAAACTTGACAGCCTATTC 58.785 41.667 0.00 0.00 0.00 1.75
108 109 4.718961 ACACAAACTTGACAGCCTATTCT 58.281 39.130 0.00 0.00 0.00 2.40
109 110 4.516698 ACACAAACTTGACAGCCTATTCTG 59.483 41.667 0.00 0.00 39.86 3.02
111 112 4.516698 ACAAACTTGACAGCCTATTCTGTG 59.483 41.667 0.72 0.00 46.40 3.66
112 113 4.357918 AACTTGACAGCCTATTCTGTGT 57.642 40.909 0.72 0.00 46.40 3.72
113 114 5.483685 AACTTGACAGCCTATTCTGTGTA 57.516 39.130 0.72 0.00 46.40 2.90
114 115 5.483685 ACTTGACAGCCTATTCTGTGTAA 57.516 39.130 0.72 0.00 46.40 2.41
115 116 6.054860 ACTTGACAGCCTATTCTGTGTAAT 57.945 37.500 0.72 0.00 46.40 1.89
116 117 6.476378 ACTTGACAGCCTATTCTGTGTAATT 58.524 36.000 0.72 0.00 46.40 1.40
117 118 7.620880 ACTTGACAGCCTATTCTGTGTAATTA 58.379 34.615 0.72 0.00 46.40 1.40
118 119 8.100791 ACTTGACAGCCTATTCTGTGTAATTAA 58.899 33.333 0.72 0.00 46.40 1.40
119 120 8.856153 TTGACAGCCTATTCTGTGTAATTAAA 57.144 30.769 0.72 0.00 46.40 1.52
120 121 9.461312 TTGACAGCCTATTCTGTGTAATTAAAT 57.539 29.630 0.72 0.00 46.40 1.40
143 144 9.709495 AAATAATGTTTAGTTGTGCATGTTCAT 57.291 25.926 0.00 0.00 0.00 2.57
144 145 8.915871 ATAATGTTTAGTTGTGCATGTTCATC 57.084 30.769 0.00 0.00 0.00 2.92
145 146 4.782156 TGTTTAGTTGTGCATGTTCATCG 58.218 39.130 0.00 0.00 0.00 3.84
146 147 4.274705 TGTTTAGTTGTGCATGTTCATCGT 59.725 37.500 0.00 0.00 0.00 3.73
147 148 4.661993 TTAGTTGTGCATGTTCATCGTC 57.338 40.909 0.00 0.00 0.00 4.20
148 149 2.493035 AGTTGTGCATGTTCATCGTCA 58.507 42.857 0.00 0.00 0.00 4.35
149 150 2.224079 AGTTGTGCATGTTCATCGTCAC 59.776 45.455 0.00 0.00 0.00 3.67
150 151 1.155889 TGTGCATGTTCATCGTCACC 58.844 50.000 0.00 0.00 0.00 4.02
151 152 0.447801 GTGCATGTTCATCGTCACCC 59.552 55.000 0.00 0.00 0.00 4.61
152 153 1.018752 TGCATGTTCATCGTCACCCG 61.019 55.000 0.00 0.00 38.13 5.28
153 154 1.705337 GCATGTTCATCGTCACCCGG 61.705 60.000 0.00 0.00 37.11 5.73
154 155 1.089481 CATGTTCATCGTCACCCGGG 61.089 60.000 22.25 22.25 37.11 5.73
155 156 2.125269 GTTCATCGTCACCCGGGG 60.125 66.667 27.92 12.73 37.11 5.73
156 157 4.090588 TTCATCGTCACCCGGGGC 62.091 66.667 27.92 13.74 37.11 5.80
158 159 4.838152 CATCGTCACCCGGGGCTG 62.838 72.222 27.92 15.82 37.11 4.85
165 166 4.741239 ACCCGGGGCTGGTGAGAT 62.741 66.667 27.92 0.00 33.94 2.75
166 167 4.181010 CCCGGGGCTGGTGAGATG 62.181 72.222 14.71 0.00 0.00 2.90
167 168 4.181010 CCGGGGCTGGTGAGATGG 62.181 72.222 0.00 0.00 0.00 3.51
168 169 3.083349 CGGGGCTGGTGAGATGGA 61.083 66.667 0.00 0.00 0.00 3.41
169 170 2.446848 CGGGGCTGGTGAGATGGAT 61.447 63.158 0.00 0.00 0.00 3.41
170 171 1.150081 GGGGCTGGTGAGATGGATG 59.850 63.158 0.00 0.00 0.00 3.51
171 172 1.527844 GGGCTGGTGAGATGGATGC 60.528 63.158 0.00 0.00 0.00 3.91
172 173 1.225426 GGCTGGTGAGATGGATGCA 59.775 57.895 0.00 0.00 0.00 3.96
173 174 0.178998 GGCTGGTGAGATGGATGCAT 60.179 55.000 0.00 0.00 0.00 3.96
174 175 0.952280 GCTGGTGAGATGGATGCATG 59.048 55.000 2.46 0.00 0.00 4.06
175 176 1.749635 GCTGGTGAGATGGATGCATGT 60.750 52.381 2.46 0.00 0.00 3.21
176 177 2.219458 CTGGTGAGATGGATGCATGTC 58.781 52.381 16.26 16.26 0.00 3.06
177 178 1.841919 TGGTGAGATGGATGCATGTCT 59.158 47.619 22.10 7.90 0.00 3.41
178 179 2.219458 GGTGAGATGGATGCATGTCTG 58.781 52.381 22.10 0.00 0.00 3.51
179 180 2.158856 GGTGAGATGGATGCATGTCTGA 60.159 50.000 22.10 3.44 0.00 3.27
180 181 3.132160 GTGAGATGGATGCATGTCTGAG 58.868 50.000 22.10 0.00 0.00 3.35
181 182 2.770232 TGAGATGGATGCATGTCTGAGT 59.230 45.455 22.10 0.00 0.00 3.41
182 183 3.132160 GAGATGGATGCATGTCTGAGTG 58.868 50.000 15.91 0.00 0.00 3.51
183 184 2.504585 AGATGGATGCATGTCTGAGTGT 59.495 45.455 2.46 0.00 0.00 3.55
184 185 2.865119 TGGATGCATGTCTGAGTGTT 57.135 45.000 2.46 0.00 0.00 3.32
185 186 3.144657 TGGATGCATGTCTGAGTGTTT 57.855 42.857 2.46 0.00 0.00 2.83
186 187 3.489355 TGGATGCATGTCTGAGTGTTTT 58.511 40.909 2.46 0.00 0.00 2.43
187 188 4.650734 TGGATGCATGTCTGAGTGTTTTA 58.349 39.130 2.46 0.00 0.00 1.52
188 189 4.455533 TGGATGCATGTCTGAGTGTTTTAC 59.544 41.667 2.46 0.00 0.00 2.01
189 190 4.697352 GGATGCATGTCTGAGTGTTTTACT 59.303 41.667 2.46 0.00 44.02 2.24
190 191 5.874810 GGATGCATGTCTGAGTGTTTTACTA 59.125 40.000 2.46 0.00 40.53 1.82
191 192 6.371548 GGATGCATGTCTGAGTGTTTTACTAA 59.628 38.462 2.46 0.00 40.53 2.24
192 193 7.066284 GGATGCATGTCTGAGTGTTTTACTAAT 59.934 37.037 2.46 0.00 40.53 1.73
193 194 9.098355 GATGCATGTCTGAGTGTTTTACTAATA 57.902 33.333 2.46 0.00 40.53 0.98
194 195 8.479313 TGCATGTCTGAGTGTTTTACTAATAG 57.521 34.615 0.00 0.00 40.53 1.73
195 196 7.549134 TGCATGTCTGAGTGTTTTACTAATAGG 59.451 37.037 0.00 0.00 40.53 2.57
196 197 7.549488 GCATGTCTGAGTGTTTTACTAATAGGT 59.451 37.037 0.00 0.00 40.53 3.08
197 198 9.088512 CATGTCTGAGTGTTTTACTAATAGGTC 57.911 37.037 0.00 0.00 40.53 3.85
198 199 7.609056 TGTCTGAGTGTTTTACTAATAGGTCC 58.391 38.462 0.00 0.00 40.53 4.46
199 200 7.453752 TGTCTGAGTGTTTTACTAATAGGTCCT 59.546 37.037 0.00 0.00 40.53 3.85
200 201 7.760340 GTCTGAGTGTTTTACTAATAGGTCCTG 59.240 40.741 0.00 0.00 40.53 3.86
201 202 6.942976 TGAGTGTTTTACTAATAGGTCCTGG 58.057 40.000 0.00 0.00 40.53 4.45
202 203 5.742063 AGTGTTTTACTAATAGGTCCTGGC 58.258 41.667 0.00 0.00 38.04 4.85
203 204 4.569564 GTGTTTTACTAATAGGTCCTGGCG 59.430 45.833 0.00 0.00 0.00 5.69
204 205 4.467082 TGTTTTACTAATAGGTCCTGGCGA 59.533 41.667 0.00 0.00 0.00 5.54
205 206 5.046448 TGTTTTACTAATAGGTCCTGGCGAA 60.046 40.000 0.00 0.00 0.00 4.70
206 207 4.660789 TTACTAATAGGTCCTGGCGAAC 57.339 45.455 0.00 0.00 0.00 3.95
207 208 1.761198 ACTAATAGGTCCTGGCGAACC 59.239 52.381 0.00 0.00 35.69 3.62
209 210 0.831307 AATAGGTCCTGGCGAACCTC 59.169 55.000 8.72 0.00 42.28 3.85
210 211 0.325296 ATAGGTCCTGGCGAACCTCA 60.325 55.000 8.72 0.00 42.28 3.86
211 212 0.325296 TAGGTCCTGGCGAACCTCAT 60.325 55.000 8.72 0.00 42.28 2.90
212 213 1.153349 GGTCCTGGCGAACCTCATC 60.153 63.158 0.00 0.00 36.63 2.92
213 214 1.617947 GGTCCTGGCGAACCTCATCT 61.618 60.000 0.00 0.00 36.63 2.90
214 215 0.460987 GTCCTGGCGAACCTCATCTG 60.461 60.000 0.00 0.00 36.63 2.90
215 216 1.153289 CCTGGCGAACCTCATCTGG 60.153 63.158 0.00 0.00 36.63 3.86
216 217 1.817099 CTGGCGAACCTCATCTGGC 60.817 63.158 0.00 0.00 36.63 4.85
217 218 2.268920 GGCGAACCTCATCTGGCA 59.731 61.111 0.00 0.00 0.00 4.92
218 219 2.109126 GGCGAACCTCATCTGGCAC 61.109 63.158 0.00 0.00 0.00 5.01
219 220 1.375908 GCGAACCTCATCTGGCACA 60.376 57.895 0.00 0.00 0.00 4.57
220 221 0.745845 GCGAACCTCATCTGGCACAT 60.746 55.000 0.00 0.00 38.20 3.21
221 222 1.293924 CGAACCTCATCTGGCACATC 58.706 55.000 0.00 0.00 38.20 3.06
222 223 1.134580 CGAACCTCATCTGGCACATCT 60.135 52.381 0.00 0.00 38.20 2.90
223 224 2.679059 CGAACCTCATCTGGCACATCTT 60.679 50.000 0.00 0.00 38.20 2.40
224 225 3.350833 GAACCTCATCTGGCACATCTTT 58.649 45.455 0.00 0.00 38.20 2.52
225 226 3.446442 ACCTCATCTGGCACATCTTTT 57.554 42.857 0.00 0.00 38.20 2.27
226 227 3.771216 ACCTCATCTGGCACATCTTTTT 58.229 40.909 0.00 0.00 38.20 1.94
249 250 7.630242 TTTTCATTATACTTGAGGCCTTCTG 57.370 36.000 6.77 2.05 0.00 3.02
250 251 4.708177 TCATTATACTTGAGGCCTTCTGC 58.292 43.478 6.77 0.00 40.16 4.26
251 252 2.890808 TATACTTGAGGCCTTCTGCG 57.109 50.000 6.77 0.00 42.61 5.18
252 253 0.905357 ATACTTGAGGCCTTCTGCGT 59.095 50.000 6.77 2.92 42.61 5.24
253 254 0.037326 TACTTGAGGCCTTCTGCGTG 60.037 55.000 6.77 0.00 42.61 5.34
254 255 1.302033 CTTGAGGCCTTCTGCGTGT 60.302 57.895 6.77 0.00 42.61 4.49
255 256 0.037326 CTTGAGGCCTTCTGCGTGTA 60.037 55.000 6.77 0.00 42.61 2.90
256 257 0.394938 TTGAGGCCTTCTGCGTGTAA 59.605 50.000 6.77 0.00 42.61 2.41
257 258 0.613260 TGAGGCCTTCTGCGTGTAAT 59.387 50.000 6.77 0.00 42.61 1.89
258 259 1.003118 TGAGGCCTTCTGCGTGTAATT 59.997 47.619 6.77 0.00 42.61 1.40
259 260 2.235155 TGAGGCCTTCTGCGTGTAATTA 59.765 45.455 6.77 0.00 42.61 1.40
260 261 3.267483 GAGGCCTTCTGCGTGTAATTAA 58.733 45.455 6.77 0.00 42.61 1.40
261 262 3.681593 AGGCCTTCTGCGTGTAATTAAA 58.318 40.909 0.00 0.00 42.61 1.52
262 263 4.270008 AGGCCTTCTGCGTGTAATTAAAT 58.730 39.130 0.00 0.00 42.61 1.40
263 264 5.433526 AGGCCTTCTGCGTGTAATTAAATA 58.566 37.500 0.00 0.00 42.61 1.40
264 265 5.883673 AGGCCTTCTGCGTGTAATTAAATAA 59.116 36.000 0.00 0.00 42.61 1.40
265 266 6.376018 AGGCCTTCTGCGTGTAATTAAATAAA 59.624 34.615 0.00 0.00 42.61 1.40
266 267 7.068226 AGGCCTTCTGCGTGTAATTAAATAAAT 59.932 33.333 0.00 0.00 42.61 1.40
267 268 7.704899 GGCCTTCTGCGTGTAATTAAATAAATT 59.295 33.333 0.00 0.00 42.61 1.82
268 269 8.531530 GCCTTCTGCGTGTAATTAAATAAATTG 58.468 33.333 0.00 0.00 38.29 2.32
269 270 8.531530 CCTTCTGCGTGTAATTAAATAAATTGC 58.468 33.333 0.00 0.00 38.29 3.56
270 271 8.972262 TTCTGCGTGTAATTAAATAAATTGCA 57.028 26.923 0.00 0.00 44.71 4.08
302 303 2.834638 AAAATCCAGCATGCTAGGGT 57.165 45.000 22.19 17.34 31.97 4.34
303 304 2.355010 AAATCCAGCATGCTAGGGTC 57.645 50.000 22.19 0.00 31.97 4.46
304 305 1.216064 AATCCAGCATGCTAGGGTCA 58.784 50.000 22.19 8.93 31.97 4.02
305 306 0.763652 ATCCAGCATGCTAGGGTCAG 59.236 55.000 22.19 5.88 31.97 3.51
306 307 1.525535 CCAGCATGCTAGGGTCAGC 60.526 63.158 22.19 0.00 42.15 4.26
307 308 1.525535 CAGCATGCTAGGGTCAGCC 60.526 63.158 22.19 0.00 41.04 4.85
308 309 1.997311 AGCATGCTAGGGTCAGCCA 60.997 57.895 21.21 0.00 41.04 4.75
309 310 1.525535 GCATGCTAGGGTCAGCCAG 60.526 63.158 11.37 0.00 41.04 4.85
310 311 1.910722 CATGCTAGGGTCAGCCAGT 59.089 57.895 0.00 0.00 41.04 4.00
311 312 0.463295 CATGCTAGGGTCAGCCAGTG 60.463 60.000 0.00 0.00 41.04 3.66
312 313 2.124942 GCTAGGGTCAGCCAGTGC 60.125 66.667 0.00 0.00 35.40 4.40
313 314 2.586792 CTAGGGTCAGCCAGTGCC 59.413 66.667 0.00 0.00 38.69 5.01
314 315 1.992277 CTAGGGTCAGCCAGTGCCT 60.992 63.158 0.00 0.00 38.69 4.75
315 316 1.538876 TAGGGTCAGCCAGTGCCTT 60.539 57.895 0.00 0.00 38.69 4.35
316 317 1.841302 TAGGGTCAGCCAGTGCCTTG 61.841 60.000 0.00 0.00 38.69 3.61
317 318 2.113986 GGTCAGCCAGTGCCTTGT 59.886 61.111 0.00 0.00 38.69 3.16
318 319 2.263741 GGTCAGCCAGTGCCTTGTG 61.264 63.158 0.00 0.00 38.69 3.33
319 320 2.595463 TCAGCCAGTGCCTTGTGC 60.595 61.111 0.00 0.00 38.69 4.57
328 329 4.329545 GCCTTGTGCACTCCGGGA 62.330 66.667 19.41 0.00 40.77 5.14
329 330 2.358737 CCTTGTGCACTCCGGGAC 60.359 66.667 19.41 0.00 0.00 4.46
330 331 2.425592 CTTGTGCACTCCGGGACA 59.574 61.111 19.41 0.00 37.34 4.02
331 332 1.003355 CTTGTGCACTCCGGGACAT 60.003 57.895 19.41 0.00 38.94 3.06
332 333 0.606401 CTTGTGCACTCCGGGACATT 60.606 55.000 19.41 0.00 38.94 2.71
333 334 0.888736 TTGTGCACTCCGGGACATTG 60.889 55.000 19.41 0.00 38.94 2.82
334 335 1.003839 GTGCACTCCGGGACATTGA 60.004 57.895 10.32 0.00 0.00 2.57
335 336 1.003839 TGCACTCCGGGACATTGAC 60.004 57.895 0.00 0.00 0.00 3.18
336 337 1.003839 GCACTCCGGGACATTGACA 60.004 57.895 0.00 0.00 0.00 3.58
337 338 1.021390 GCACTCCGGGACATTGACAG 61.021 60.000 0.00 0.00 0.00 3.51
338 339 0.391661 CACTCCGGGACATTGACAGG 60.392 60.000 0.00 0.00 0.00 4.00
339 340 0.836400 ACTCCGGGACATTGACAGGT 60.836 55.000 0.00 0.00 0.00 4.00
340 341 0.391661 CTCCGGGACATTGACAGGTG 60.392 60.000 0.00 0.00 0.00 4.00
341 342 1.377202 CCGGGACATTGACAGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
342 343 1.377202 CGGGACATTGACAGGTGGG 60.377 63.158 0.00 0.00 0.00 4.61
343 344 1.678970 GGGACATTGACAGGTGGGC 60.679 63.158 0.00 0.00 0.00 5.36
344 345 1.678970 GGACATTGACAGGTGGGCC 60.679 63.158 0.00 0.00 0.00 5.80
346 347 0.251341 GACATTGACAGGTGGGCCTT 60.251 55.000 4.53 0.00 44.18 4.35
347 348 0.251341 ACATTGACAGGTGGGCCTTC 60.251 55.000 4.53 0.00 44.18 3.46
348 349 1.002134 ATTGACAGGTGGGCCTTCG 60.002 57.895 4.53 0.00 44.18 3.79
349 350 3.842925 TTGACAGGTGGGCCTTCGC 62.843 63.158 4.53 0.00 44.18 4.70
366 367 2.985282 CCAGGCTGGCTCGCAAAA 60.985 61.111 22.68 0.00 0.00 2.44
367 368 2.563798 CCAGGCTGGCTCGCAAAAA 61.564 57.895 22.68 0.00 0.00 1.94
397 398 5.212532 GGCTATATGGCTGGATATGAGAG 57.787 47.826 11.16 0.00 38.32 3.20
398 399 4.040217 GGCTATATGGCTGGATATGAGAGG 59.960 50.000 11.16 0.00 38.32 3.69
399 400 4.898265 GCTATATGGCTGGATATGAGAGGA 59.102 45.833 3.42 0.00 0.00 3.71
400 401 5.365025 GCTATATGGCTGGATATGAGAGGAA 59.635 44.000 3.42 0.00 0.00 3.36
401 402 6.043012 GCTATATGGCTGGATATGAGAGGAAT 59.957 42.308 3.42 0.00 0.00 3.01
402 403 4.840716 ATGGCTGGATATGAGAGGAATC 57.159 45.455 0.00 0.00 0.00 2.52
403 404 2.564504 TGGCTGGATATGAGAGGAATCG 59.435 50.000 0.00 0.00 0.00 3.34
404 405 2.564947 GGCTGGATATGAGAGGAATCGT 59.435 50.000 0.00 0.00 0.00 3.73
405 406 3.367910 GGCTGGATATGAGAGGAATCGTC 60.368 52.174 0.00 0.00 0.00 4.20
406 407 3.671971 GCTGGATATGAGAGGAATCGTCG 60.672 52.174 0.00 0.00 0.00 5.12
407 408 3.487372 TGGATATGAGAGGAATCGTCGT 58.513 45.455 0.00 0.00 0.00 4.34
408 409 4.648651 TGGATATGAGAGGAATCGTCGTA 58.351 43.478 0.00 0.00 0.00 3.43
409 410 5.254115 TGGATATGAGAGGAATCGTCGTAT 58.746 41.667 0.00 0.00 0.00 3.06
410 411 5.710567 TGGATATGAGAGGAATCGTCGTATT 59.289 40.000 0.00 0.00 0.00 1.89
411 412 6.208797 TGGATATGAGAGGAATCGTCGTATTT 59.791 38.462 0.00 0.00 0.00 1.40
412 413 6.528423 GGATATGAGAGGAATCGTCGTATTTG 59.472 42.308 0.00 0.00 0.00 2.32
413 414 3.444916 TGAGAGGAATCGTCGTATTTGC 58.555 45.455 0.00 0.00 0.00 3.68
414 415 3.119280 TGAGAGGAATCGTCGTATTTGCA 60.119 43.478 0.00 0.00 0.00 4.08
415 416 3.187700 AGAGGAATCGTCGTATTTGCAC 58.812 45.455 0.00 0.00 0.00 4.57
416 417 2.927477 GAGGAATCGTCGTATTTGCACA 59.073 45.455 0.00 0.00 0.00 4.57
417 418 3.331150 AGGAATCGTCGTATTTGCACAA 58.669 40.909 0.00 0.00 0.00 3.33
418 419 3.370978 AGGAATCGTCGTATTTGCACAAG 59.629 43.478 0.00 0.00 0.00 3.16
419 420 3.369756 GGAATCGTCGTATTTGCACAAGA 59.630 43.478 0.00 0.00 0.00 3.02
420 421 4.142988 GGAATCGTCGTATTTGCACAAGAA 60.143 41.667 0.00 0.00 0.00 2.52
421 422 3.781341 TCGTCGTATTTGCACAAGAAC 57.219 42.857 0.00 0.00 0.00 3.01
422 423 2.154198 TCGTCGTATTTGCACAAGAACG 59.846 45.455 11.23 11.23 34.04 3.95
423 424 2.230864 GTCGTATTTGCACAAGAACGC 58.769 47.619 12.16 6.53 33.31 4.84
424 425 1.867865 TCGTATTTGCACAAGAACGCA 59.132 42.857 12.16 0.00 36.05 5.24
425 426 2.288186 TCGTATTTGCACAAGAACGCAA 59.712 40.909 12.16 0.00 45.93 4.85
444 445 6.559042 CGCAAGTTGAATGACCATAAATTC 57.441 37.500 7.16 0.00 34.11 2.17
445 446 6.092092 CGCAAGTTGAATGACCATAAATTCA 58.908 36.000 7.16 0.00 40.21 2.57
446 447 6.753279 CGCAAGTTGAATGACCATAAATTCAT 59.247 34.615 7.16 0.00 41.23 2.57
447 448 7.914871 CGCAAGTTGAATGACCATAAATTCATA 59.085 33.333 7.16 0.00 41.23 2.15
448 449 9.754382 GCAAGTTGAATGACCATAAATTCATAT 57.246 29.630 7.16 0.00 41.23 1.78
479 480 9.442047 AAAGTTTTAACACCAAATTGAACATCA 57.558 25.926 0.00 0.00 0.00 3.07
480 481 9.442047 AAGTTTTAACACCAAATTGAACATCAA 57.558 25.926 0.00 0.00 41.09 2.57
481 482 9.097257 AGTTTTAACACCAAATTGAACATCAAG 57.903 29.630 0.00 0.00 40.05 3.02
482 483 7.475771 TTTAACACCAAATTGAACATCAAGC 57.524 32.000 0.00 0.00 40.05 4.01
483 484 4.669206 ACACCAAATTGAACATCAAGCA 57.331 36.364 0.00 0.00 40.05 3.91
484 485 4.370917 ACACCAAATTGAACATCAAGCAC 58.629 39.130 0.00 0.00 40.05 4.40
485 486 4.141981 ACACCAAATTGAACATCAAGCACA 60.142 37.500 0.00 0.00 40.05 4.57
486 487 4.809958 CACCAAATTGAACATCAAGCACAA 59.190 37.500 0.00 0.00 40.05 3.33
487 488 5.050634 CACCAAATTGAACATCAAGCACAAG 60.051 40.000 0.00 0.00 40.05 3.16
488 489 5.051816 CCAAATTGAACATCAAGCACAAGT 58.948 37.500 0.00 0.00 40.05 3.16
489 490 5.524646 CCAAATTGAACATCAAGCACAAGTT 59.475 36.000 0.00 0.00 40.05 2.66
490 491 6.037391 CCAAATTGAACATCAAGCACAAGTTT 59.963 34.615 0.00 0.00 40.05 2.66
491 492 7.414319 CCAAATTGAACATCAAGCACAAGTTTT 60.414 33.333 0.00 0.00 40.05 2.43
492 493 6.592798 ATTGAACATCAAGCACAAGTTTTG 57.407 33.333 0.00 0.00 40.05 2.44
493 494 5.070770 TGAACATCAAGCACAAGTTTTGT 57.929 34.783 0.00 0.00 46.75 2.83
494 495 5.348179 TTGAACATCAAGCACAAGTTTTGTG 59.652 36.000 15.61 15.61 46.02 3.33
495 496 6.792542 TTGAACATCAAGCACAAGTTTTGTGA 60.793 34.615 22.21 5.11 45.52 3.58
496 497 8.731337 TTGAACATCAAGCACAAGTTTTGTGAC 61.731 37.037 22.21 14.29 45.52 3.67
509 510 9.444600 ACAAGTTTTGTGACTACCGATAATATT 57.555 29.630 0.00 0.00 43.48 1.28
512 513 9.538508 AGTTTTGTGACTACCGATAATATTACC 57.461 33.333 0.00 0.00 0.00 2.85
513 514 9.538508 GTTTTGTGACTACCGATAATATTACCT 57.461 33.333 0.00 0.00 0.00 3.08
514 515 9.754382 TTTTGTGACTACCGATAATATTACCTC 57.246 33.333 0.00 0.00 0.00 3.85
515 516 8.701908 TTGTGACTACCGATAATATTACCTCT 57.298 34.615 0.00 0.00 0.00 3.69
516 517 9.797642 TTGTGACTACCGATAATATTACCTCTA 57.202 33.333 0.00 0.00 0.00 2.43
517 518 9.797642 TGTGACTACCGATAATATTACCTCTAA 57.202 33.333 0.00 0.00 0.00 2.10
555 556 4.319177 AGCACTTCATCACTCAAGTTACC 58.681 43.478 0.00 0.00 30.06 2.85
580 581 4.202760 GCCTAGATCCTAACCCTAACCCTA 60.203 50.000 0.00 0.00 0.00 3.53
581 582 5.697685 GCCTAGATCCTAACCCTAACCCTAA 60.698 48.000 0.00 0.00 0.00 2.69
582 583 5.779260 CCTAGATCCTAACCCTAACCCTAAC 59.221 48.000 0.00 0.00 0.00 2.34
583 584 4.564799 AGATCCTAACCCTAACCCTAACC 58.435 47.826 0.00 0.00 0.00 2.85
584 585 3.135161 TCCTAACCCTAACCCTAACCC 57.865 52.381 0.00 0.00 0.00 4.11
585 586 2.130193 CCTAACCCTAACCCTAACCCC 58.870 57.143 0.00 0.00 0.00 4.95
626 627 4.093261 CCAAACACACCAAAGCTGAAAAAG 59.907 41.667 0.00 0.00 0.00 2.27
629 630 1.138859 ACACCAAAGCTGAAAAAGGCC 59.861 47.619 0.00 0.00 0.00 5.19
630 631 0.758734 ACCAAAGCTGAAAAAGGCCC 59.241 50.000 0.00 0.00 0.00 5.80
654 655 2.409870 GCCAGGAAATGACAGCGGG 61.410 63.158 0.00 0.00 0.00 6.13
660 661 2.893682 GAAATGACAGCGGGGGAGGG 62.894 65.000 0.00 0.00 0.00 4.30
675 679 1.272704 GGAGGGGCAGGAAAAGACATT 60.273 52.381 0.00 0.00 0.00 2.71
702 706 3.597255 GGAGGAAGAAAGTCCGGTAAAG 58.403 50.000 0.00 0.00 43.03 1.85
800 808 0.526662 TCGGCGTCTTCTTCTCTTCC 59.473 55.000 6.85 0.00 0.00 3.46
807 815 0.827368 CTTCTTCTCTTCCCTCCCCG 59.173 60.000 0.00 0.00 0.00 5.73
912 921 1.219393 GGCTGGAGGAAGACGAAGG 59.781 63.158 0.00 0.00 0.00 3.46
952 961 3.276642 ATTTTGGGGGACGGACGGG 62.277 63.158 0.00 0.00 0.00 5.28
1081 1093 2.529136 CCACCACCACCTCCTCCA 60.529 66.667 0.00 0.00 0.00 3.86
1090 1102 2.689034 CCTCCTCCACCTCCACCC 60.689 72.222 0.00 0.00 0.00 4.61
1136 1166 2.353607 GGATCGCGAGCAGTACCG 60.354 66.667 27.12 0.00 0.00 4.02
1863 1905 1.065854 GTGCTCAGCCAGTTCTACCAT 60.066 52.381 0.00 0.00 0.00 3.55
1954 2002 4.962836 AGCACCACCACCAGCAGC 62.963 66.667 0.00 0.00 0.00 5.25
1956 2004 2.981909 CACCACCACCAGCAGCAG 60.982 66.667 0.00 0.00 0.00 4.24
1957 2005 4.962836 ACCACCACCAGCAGCAGC 62.963 66.667 0.00 0.00 42.56 5.25
1958 2006 4.960866 CCACCACCAGCAGCAGCA 62.961 66.667 3.17 0.00 45.49 4.41
1959 2007 3.362797 CACCACCAGCAGCAGCAG 61.363 66.667 3.17 0.00 45.49 4.24
2168 2220 1.746220 TGTTGTTGTTCGTTCTTGGGG 59.254 47.619 0.00 0.00 0.00 4.96
2215 2267 4.873746 TTTTCACTTGTGGTGTCCAAAA 57.126 36.364 0.64 0.00 45.50 2.44
2241 2293 1.748500 GAGGCTTCTTGCTCTGGGC 60.749 63.158 0.00 0.00 42.39 5.36
2257 2309 3.269381 TCTGGGCTTTTAGTGGAATGGAT 59.731 43.478 0.00 0.00 0.00 3.41
2258 2310 3.631250 TGGGCTTTTAGTGGAATGGATC 58.369 45.455 0.00 0.00 0.00 3.36
2259 2311 3.011144 TGGGCTTTTAGTGGAATGGATCA 59.989 43.478 0.00 0.00 0.00 2.92
2260 2312 3.633986 GGGCTTTTAGTGGAATGGATCAG 59.366 47.826 0.00 0.00 0.00 2.90
2261 2313 3.633986 GGCTTTTAGTGGAATGGATCAGG 59.366 47.826 0.00 0.00 0.00 3.86
2262 2314 3.633986 GCTTTTAGTGGAATGGATCAGGG 59.366 47.826 0.00 0.00 0.00 4.45
2263 2315 4.628715 GCTTTTAGTGGAATGGATCAGGGA 60.629 45.833 0.00 0.00 0.00 4.20
2264 2316 5.699143 CTTTTAGTGGAATGGATCAGGGAT 58.301 41.667 0.00 0.00 0.00 3.85
2299 2351 1.042559 GCTCCTACTCCTGCTGCTCT 61.043 60.000 0.00 0.00 0.00 4.09
2362 2419 3.270027 TCGATCATTTTCTGCATTCCGT 58.730 40.909 0.00 0.00 0.00 4.69
2421 2489 3.096092 TGAGCCTTTTGTTTTGTGTCCT 58.904 40.909 0.00 0.00 0.00 3.85
2435 2503 3.670625 TGTGTCCTTATTGCAGGTGTAC 58.329 45.455 0.00 0.00 35.15 2.90
2441 2509 6.113411 GTCCTTATTGCAGGTGTACAATAGT 58.887 40.000 0.00 0.00 39.29 2.12
2674 2744 9.790344 ATAAACATTTCTAGATCCCTGATTCTG 57.210 33.333 0.00 0.00 0.00 3.02
2736 2806 3.953612 TCCTTGTTTGCTTCATCTGTGTT 59.046 39.130 0.00 0.00 0.00 3.32
2754 2824 6.775142 TCTGTGTTGGACCAATGATTCTTTTA 59.225 34.615 10.83 0.00 0.00 1.52
2758 2830 9.921637 GTGTTGGACCAATGATTCTTTTAATTA 57.078 29.630 10.83 0.00 0.00 1.40
2801 2873 4.513318 AGTTGCACTACTTTCTCTTGCTTC 59.487 41.667 0.00 0.00 34.18 3.86
2817 2889 3.719871 TGCTTCTAATGTACTCCCTCCA 58.280 45.455 0.00 0.00 0.00 3.86
2819 2891 4.721776 TGCTTCTAATGTACTCCCTCCAAT 59.278 41.667 0.00 0.00 0.00 3.16
2825 2897 7.079700 TCTAATGTACTCCCTCCAATCCATAA 58.920 38.462 0.00 0.00 0.00 1.90
2832 2904 5.911178 ACTCCCTCCAATCCATAATAAGTGA 59.089 40.000 0.00 0.00 0.00 3.41
2834 2906 4.997395 CCCTCCAATCCATAATAAGTGACG 59.003 45.833 0.00 0.00 0.00 4.35
2836 2908 5.466728 CCTCCAATCCATAATAAGTGACGTG 59.533 44.000 0.00 0.00 0.00 4.49
2837 2909 5.364778 TCCAATCCATAATAAGTGACGTGG 58.635 41.667 0.00 0.00 0.00 4.94
2882 2955 4.617959 ACCACGACACTTATTATGGATCG 58.382 43.478 0.00 0.00 0.00 3.69
2959 3048 4.513318 GGATAAGGCAGTAGAATGTTCAGC 59.487 45.833 0.00 0.00 0.00 4.26
2967 3056 5.233902 GCAGTAGAATGTTCAGCAGATGTAG 59.766 44.000 0.00 0.00 0.00 2.74
2970 3059 4.428209 AGAATGTTCAGCAGATGTAGTCG 58.572 43.478 0.00 0.00 0.00 4.18
2991 3080 4.082463 TCGGGATGGTGAAATGTTTTTAGC 60.082 41.667 0.00 0.00 0.00 3.09
2993 3082 5.624281 CGGGATGGTGAAATGTTTTTAGCAT 60.624 40.000 8.56 8.56 32.76 3.79
3013 3102 9.777297 TTAGCATTTAGATGTGCATGAATACTA 57.223 29.630 0.00 0.00 43.63 1.82
3025 3114 9.299963 TGTGCATGAATACTAAATTTATTGCAC 57.700 29.630 20.79 20.79 44.25 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.770097 ATCAGTAGGATATGAACAACATGTTAG 57.230 33.333 11.53 8.48 36.02 2.34
3 4 9.770097 CTAATCAGTAGGATATGAACAACATGT 57.230 33.333 0.00 0.00 39.77 3.21
4 5 9.770097 ACTAATCAGTAGGATATGAACAACATG 57.230 33.333 0.00 0.00 34.76 3.21
5 6 9.770097 CACTAATCAGTAGGATATGAACAACAT 57.230 33.333 0.00 0.00 37.28 2.71
6 7 8.204160 CCACTAATCAGTAGGATATGAACAACA 58.796 37.037 0.00 0.00 34.28 3.33
7 8 7.171678 GCCACTAATCAGTAGGATATGAACAAC 59.828 40.741 0.00 0.00 34.28 3.32
8 9 7.217200 GCCACTAATCAGTAGGATATGAACAA 58.783 38.462 0.00 0.00 34.28 2.83
9 10 6.239600 GGCCACTAATCAGTAGGATATGAACA 60.240 42.308 0.00 0.00 34.28 3.18
10 11 6.014156 AGGCCACTAATCAGTAGGATATGAAC 60.014 42.308 5.01 0.00 34.28 3.18
11 12 6.084738 AGGCCACTAATCAGTAGGATATGAA 58.915 40.000 5.01 0.00 34.28 2.57
12 13 5.655394 AGGCCACTAATCAGTAGGATATGA 58.345 41.667 5.01 0.00 34.28 2.15
13 14 5.481824 TGAGGCCACTAATCAGTAGGATATG 59.518 44.000 5.01 0.00 34.28 1.78
14 15 5.482175 GTGAGGCCACTAATCAGTAGGATAT 59.518 44.000 5.01 0.00 40.10 1.63
15 16 4.833380 GTGAGGCCACTAATCAGTAGGATA 59.167 45.833 5.01 0.00 40.10 2.59
16 17 3.643792 GTGAGGCCACTAATCAGTAGGAT 59.356 47.826 5.01 0.00 40.10 3.24
17 18 3.031736 GTGAGGCCACTAATCAGTAGGA 58.968 50.000 5.01 0.00 40.10 2.94
18 19 2.103263 GGTGAGGCCACTAATCAGTAGG 59.897 54.545 5.01 0.00 42.77 3.18
19 20 2.103263 GGGTGAGGCCACTAATCAGTAG 59.897 54.545 5.01 0.00 42.77 2.57
20 21 2.116238 GGGTGAGGCCACTAATCAGTA 58.884 52.381 5.01 0.00 42.77 2.74
21 22 0.912486 GGGTGAGGCCACTAATCAGT 59.088 55.000 5.01 0.00 42.77 3.41
22 23 1.207791 AGGGTGAGGCCACTAATCAG 58.792 55.000 5.01 0.00 42.77 2.90
23 24 1.668826 AAGGGTGAGGCCACTAATCA 58.331 50.000 5.01 0.00 42.77 2.57
24 25 3.926058 TTAAGGGTGAGGCCACTAATC 57.074 47.619 5.01 0.00 42.77 1.75
25 26 4.881157 ATTTAAGGGTGAGGCCACTAAT 57.119 40.909 5.01 0.00 42.77 1.73
26 27 4.668138 AATTTAAGGGTGAGGCCACTAA 57.332 40.909 5.01 0.00 42.77 2.24
27 28 4.080186 GGTAATTTAAGGGTGAGGCCACTA 60.080 45.833 5.01 0.00 42.77 2.74
28 29 3.308904 GGTAATTTAAGGGTGAGGCCACT 60.309 47.826 5.01 0.00 42.77 4.00
29 30 3.021695 GGTAATTTAAGGGTGAGGCCAC 58.978 50.000 5.01 0.00 42.46 5.01
30 31 2.024751 GGGTAATTTAAGGGTGAGGCCA 60.025 50.000 5.01 0.00 39.65 5.36
31 32 2.024751 TGGGTAATTTAAGGGTGAGGCC 60.025 50.000 0.00 0.00 0.00 5.19
32 33 3.021695 GTGGGTAATTTAAGGGTGAGGC 58.978 50.000 0.00 0.00 0.00 4.70
33 34 4.586306 AGTGGGTAATTTAAGGGTGAGG 57.414 45.455 0.00 0.00 0.00 3.86
34 35 6.070424 TGTCTAGTGGGTAATTTAAGGGTGAG 60.070 42.308 0.00 0.00 0.00 3.51
35 36 5.786457 TGTCTAGTGGGTAATTTAAGGGTGA 59.214 40.000 0.00 0.00 0.00 4.02
36 37 6.057321 TGTCTAGTGGGTAATTTAAGGGTG 57.943 41.667 0.00 0.00 0.00 4.61
37 38 6.903340 ATGTCTAGTGGGTAATTTAAGGGT 57.097 37.500 0.00 0.00 0.00 4.34
38 39 8.656806 TCATATGTCTAGTGGGTAATTTAAGGG 58.343 37.037 1.90 0.00 0.00 3.95
39 40 9.712305 CTCATATGTCTAGTGGGTAATTTAAGG 57.288 37.037 1.90 0.00 0.00 2.69
40 41 9.209175 GCTCATATGTCTAGTGGGTAATTTAAG 57.791 37.037 1.90 0.00 0.00 1.85
41 42 8.154856 GGCTCATATGTCTAGTGGGTAATTTAA 58.845 37.037 1.90 0.00 0.00 1.52
42 43 7.512746 AGGCTCATATGTCTAGTGGGTAATTTA 59.487 37.037 1.90 0.00 0.00 1.40
43 44 6.330250 AGGCTCATATGTCTAGTGGGTAATTT 59.670 38.462 1.90 0.00 0.00 1.82
44 45 5.846714 AGGCTCATATGTCTAGTGGGTAATT 59.153 40.000 1.90 0.00 0.00 1.40
45 46 5.407049 AGGCTCATATGTCTAGTGGGTAAT 58.593 41.667 1.90 0.00 0.00 1.89
46 47 4.816126 AGGCTCATATGTCTAGTGGGTAA 58.184 43.478 1.90 0.00 0.00 2.85
47 48 4.471078 AGGCTCATATGTCTAGTGGGTA 57.529 45.455 1.90 0.00 0.00 3.69
48 49 3.336509 AGGCTCATATGTCTAGTGGGT 57.663 47.619 1.90 0.00 0.00 4.51
49 50 4.346418 AGAAAGGCTCATATGTCTAGTGGG 59.654 45.833 1.90 0.00 0.00 4.61
50 51 5.543507 AGAAAGGCTCATATGTCTAGTGG 57.456 43.478 1.90 0.00 0.00 4.00
51 52 6.146216 CGTAGAAAGGCTCATATGTCTAGTG 58.854 44.000 1.90 0.00 0.00 2.74
52 53 5.828859 ACGTAGAAAGGCTCATATGTCTAGT 59.171 40.000 1.90 0.47 0.00 2.57
53 54 6.320494 ACGTAGAAAGGCTCATATGTCTAG 57.680 41.667 1.90 0.00 0.00 2.43
54 55 7.812690 TTACGTAGAAAGGCTCATATGTCTA 57.187 36.000 1.90 0.00 0.00 2.59
55 56 6.710597 TTACGTAGAAAGGCTCATATGTCT 57.289 37.500 1.90 0.00 0.00 3.41
56 57 7.652105 TCAATTACGTAGAAAGGCTCATATGTC 59.348 37.037 1.90 0.00 0.00 3.06
57 58 7.438459 GTCAATTACGTAGAAAGGCTCATATGT 59.562 37.037 1.90 0.00 0.00 2.29
58 59 7.095607 GGTCAATTACGTAGAAAGGCTCATATG 60.096 40.741 0.00 0.00 0.00 1.78
59 60 6.929606 GGTCAATTACGTAGAAAGGCTCATAT 59.070 38.462 0.00 0.00 0.00 1.78
60 61 6.127281 TGGTCAATTACGTAGAAAGGCTCATA 60.127 38.462 0.00 0.00 0.00 2.15
61 62 5.116882 GGTCAATTACGTAGAAAGGCTCAT 58.883 41.667 0.00 0.00 0.00 2.90
62 63 4.020928 TGGTCAATTACGTAGAAAGGCTCA 60.021 41.667 0.00 0.00 0.00 4.26
63 64 4.501071 TGGTCAATTACGTAGAAAGGCTC 58.499 43.478 0.00 0.00 0.00 4.70
64 65 4.546829 TGGTCAATTACGTAGAAAGGCT 57.453 40.909 0.00 0.00 0.00 4.58
65 66 4.453136 TGTTGGTCAATTACGTAGAAAGGC 59.547 41.667 0.00 0.00 0.00 4.35
66 67 5.467399 TGTGTTGGTCAATTACGTAGAAAGG 59.533 40.000 0.00 0.00 0.00 3.11
67 68 6.533819 TGTGTTGGTCAATTACGTAGAAAG 57.466 37.500 0.00 0.00 0.00 2.62
68 69 6.922247 TTGTGTTGGTCAATTACGTAGAAA 57.078 33.333 0.00 0.00 0.00 2.52
69 70 6.539464 AGTTTGTGTTGGTCAATTACGTAGAA 59.461 34.615 0.00 0.00 0.00 2.10
70 71 6.050432 AGTTTGTGTTGGTCAATTACGTAGA 58.950 36.000 0.00 0.00 0.00 2.59
71 72 6.295039 AGTTTGTGTTGGTCAATTACGTAG 57.705 37.500 0.00 0.00 0.00 3.51
72 73 6.315642 TCAAGTTTGTGTTGGTCAATTACGTA 59.684 34.615 0.00 0.00 0.00 3.57
73 74 5.124138 TCAAGTTTGTGTTGGTCAATTACGT 59.876 36.000 0.00 0.00 0.00 3.57
74 75 5.454232 GTCAAGTTTGTGTTGGTCAATTACG 59.546 40.000 0.00 0.00 0.00 3.18
75 76 6.326375 TGTCAAGTTTGTGTTGGTCAATTAC 58.674 36.000 0.00 0.00 0.00 1.89
76 77 6.516739 TGTCAAGTTTGTGTTGGTCAATTA 57.483 33.333 0.00 0.00 0.00 1.40
77 78 5.398603 TGTCAAGTTTGTGTTGGTCAATT 57.601 34.783 0.00 0.00 0.00 2.32
78 79 4.677779 GCTGTCAAGTTTGTGTTGGTCAAT 60.678 41.667 0.00 0.00 0.00 2.57
79 80 3.366883 GCTGTCAAGTTTGTGTTGGTCAA 60.367 43.478 0.00 0.00 0.00 3.18
80 81 2.163412 GCTGTCAAGTTTGTGTTGGTCA 59.837 45.455 0.00 0.00 0.00 4.02
81 82 2.479560 GGCTGTCAAGTTTGTGTTGGTC 60.480 50.000 0.00 0.00 0.00 4.02
82 83 1.476488 GGCTGTCAAGTTTGTGTTGGT 59.524 47.619 0.00 0.00 0.00 3.67
83 84 1.750778 AGGCTGTCAAGTTTGTGTTGG 59.249 47.619 0.00 0.00 0.00 3.77
84 85 4.836125 ATAGGCTGTCAAGTTTGTGTTG 57.164 40.909 0.00 0.00 0.00 3.33
85 86 5.009010 CAGAATAGGCTGTCAAGTTTGTGTT 59.991 40.000 0.00 0.00 0.00 3.32
86 87 4.516698 CAGAATAGGCTGTCAAGTTTGTGT 59.483 41.667 0.00 0.00 0.00 3.72
87 88 4.516698 ACAGAATAGGCTGTCAAGTTTGTG 59.483 41.667 0.00 0.00 45.54 3.33
88 89 4.516698 CACAGAATAGGCTGTCAAGTTTGT 59.483 41.667 0.00 0.00 45.54 2.83
89 90 4.516698 ACACAGAATAGGCTGTCAAGTTTG 59.483 41.667 0.00 0.00 45.54 2.93
90 91 4.718961 ACACAGAATAGGCTGTCAAGTTT 58.281 39.130 0.00 0.00 45.54 2.66
91 92 4.357918 ACACAGAATAGGCTGTCAAGTT 57.642 40.909 0.00 0.00 45.54 2.66
92 93 5.483685 TTACACAGAATAGGCTGTCAAGT 57.516 39.130 0.00 0.00 45.54 3.16
93 94 6.992063 AATTACACAGAATAGGCTGTCAAG 57.008 37.500 0.00 0.00 45.54 3.02
94 95 8.856153 TTTAATTACACAGAATAGGCTGTCAA 57.144 30.769 0.00 0.00 45.54 3.18
117 118 9.709495 ATGAACATGCACAACTAAACATTATTT 57.291 25.926 0.00 0.00 0.00 1.40
118 119 9.357652 GATGAACATGCACAACTAAACATTATT 57.642 29.630 0.00 0.00 0.00 1.40
119 120 7.697710 CGATGAACATGCACAACTAAACATTAT 59.302 33.333 0.00 0.00 0.00 1.28
120 121 7.020602 CGATGAACATGCACAACTAAACATTA 58.979 34.615 0.00 0.00 0.00 1.90
121 122 5.858049 CGATGAACATGCACAACTAAACATT 59.142 36.000 0.00 0.00 0.00 2.71
122 123 5.048782 ACGATGAACATGCACAACTAAACAT 60.049 36.000 0.00 0.00 0.00 2.71
123 124 4.274705 ACGATGAACATGCACAACTAAACA 59.725 37.500 0.00 0.00 0.00 2.83
124 125 4.783242 ACGATGAACATGCACAACTAAAC 58.217 39.130 0.00 0.00 0.00 2.01
125 126 4.513318 TGACGATGAACATGCACAACTAAA 59.487 37.500 0.00 0.00 0.00 1.85
126 127 4.061596 TGACGATGAACATGCACAACTAA 58.938 39.130 0.00 0.00 0.00 2.24
127 128 3.431912 GTGACGATGAACATGCACAACTA 59.568 43.478 0.00 0.00 0.00 2.24
128 129 2.224079 GTGACGATGAACATGCACAACT 59.776 45.455 0.00 0.00 0.00 3.16
129 130 2.574322 GTGACGATGAACATGCACAAC 58.426 47.619 0.00 0.00 0.00 3.32
130 131 1.535028 GGTGACGATGAACATGCACAA 59.465 47.619 0.00 0.00 0.00 3.33
131 132 1.155889 GGTGACGATGAACATGCACA 58.844 50.000 0.00 0.00 0.00 4.57
132 133 0.447801 GGGTGACGATGAACATGCAC 59.552 55.000 0.00 0.00 0.00 4.57
133 134 2.853159 GGGTGACGATGAACATGCA 58.147 52.632 0.00 0.00 0.00 3.96
148 149 4.741239 ATCTCACCAGCCCCGGGT 62.741 66.667 21.85 0.00 39.88 5.28
149 150 4.181010 CATCTCACCAGCCCCGGG 62.181 72.222 15.80 15.80 0.00 5.73
150 151 4.181010 CCATCTCACCAGCCCCGG 62.181 72.222 0.00 0.00 0.00 5.73
151 152 2.446848 ATCCATCTCACCAGCCCCG 61.447 63.158 0.00 0.00 0.00 5.73
152 153 1.150081 CATCCATCTCACCAGCCCC 59.850 63.158 0.00 0.00 0.00 5.80
153 154 1.527844 GCATCCATCTCACCAGCCC 60.528 63.158 0.00 0.00 0.00 5.19
154 155 0.178998 ATGCATCCATCTCACCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
155 156 0.952280 CATGCATCCATCTCACCAGC 59.048 55.000 0.00 0.00 0.00 4.85
156 157 2.158798 AGACATGCATCCATCTCACCAG 60.159 50.000 0.00 0.00 0.00 4.00
157 158 1.841919 AGACATGCATCCATCTCACCA 59.158 47.619 0.00 0.00 0.00 4.17
158 159 2.158856 TCAGACATGCATCCATCTCACC 60.159 50.000 0.00 0.00 0.00 4.02
159 160 3.132160 CTCAGACATGCATCCATCTCAC 58.868 50.000 0.00 0.00 0.00 3.51
160 161 2.770232 ACTCAGACATGCATCCATCTCA 59.230 45.455 0.00 0.00 0.00 3.27
161 162 3.132160 CACTCAGACATGCATCCATCTC 58.868 50.000 0.00 0.00 0.00 2.75
162 163 2.504585 ACACTCAGACATGCATCCATCT 59.495 45.455 0.00 0.00 0.00 2.90
163 164 2.915349 ACACTCAGACATGCATCCATC 58.085 47.619 0.00 0.00 0.00 3.51
164 165 3.361281 AACACTCAGACATGCATCCAT 57.639 42.857 0.00 0.00 0.00 3.41
165 166 2.865119 AACACTCAGACATGCATCCA 57.135 45.000 0.00 0.00 0.00 3.41
166 167 4.697352 AGTAAAACACTCAGACATGCATCC 59.303 41.667 0.00 0.00 28.33 3.51
167 168 5.869753 AGTAAAACACTCAGACATGCATC 57.130 39.130 0.00 0.00 28.33 3.91
168 169 7.928307 ATTAGTAAAACACTCAGACATGCAT 57.072 32.000 0.00 0.00 38.80 3.96
169 170 7.549134 CCTATTAGTAAAACACTCAGACATGCA 59.451 37.037 0.00 0.00 38.80 3.96
170 171 7.549488 ACCTATTAGTAAAACACTCAGACATGC 59.451 37.037 0.00 0.00 38.80 4.06
171 172 9.088512 GACCTATTAGTAAAACACTCAGACATG 57.911 37.037 0.00 0.00 38.80 3.21
172 173 8.258708 GGACCTATTAGTAAAACACTCAGACAT 58.741 37.037 0.00 0.00 38.80 3.06
173 174 7.453752 AGGACCTATTAGTAAAACACTCAGACA 59.546 37.037 0.00 0.00 38.80 3.41
174 175 7.760340 CAGGACCTATTAGTAAAACACTCAGAC 59.240 40.741 0.00 0.00 38.80 3.51
175 176 7.093465 CCAGGACCTATTAGTAAAACACTCAGA 60.093 40.741 0.00 0.00 38.80 3.27
176 177 7.042335 CCAGGACCTATTAGTAAAACACTCAG 58.958 42.308 0.00 0.00 38.80 3.35
177 178 6.575649 GCCAGGACCTATTAGTAAAACACTCA 60.576 42.308 0.00 0.00 38.80 3.41
178 179 5.816258 GCCAGGACCTATTAGTAAAACACTC 59.184 44.000 0.00 0.00 38.80 3.51
179 180 5.626116 CGCCAGGACCTATTAGTAAAACACT 60.626 44.000 0.00 0.00 41.62 3.55
180 181 4.569564 CGCCAGGACCTATTAGTAAAACAC 59.430 45.833 0.00 0.00 0.00 3.32
181 182 4.467082 TCGCCAGGACCTATTAGTAAAACA 59.533 41.667 0.00 0.00 0.00 2.83
182 183 5.014808 TCGCCAGGACCTATTAGTAAAAC 57.985 43.478 0.00 0.00 0.00 2.43
183 184 5.422145 GTTCGCCAGGACCTATTAGTAAAA 58.578 41.667 0.00 0.00 0.00 1.52
184 185 4.141869 GGTTCGCCAGGACCTATTAGTAAA 60.142 45.833 0.00 0.00 37.19 2.01
185 186 3.385755 GGTTCGCCAGGACCTATTAGTAA 59.614 47.826 0.00 0.00 37.19 2.24
186 187 2.961062 GGTTCGCCAGGACCTATTAGTA 59.039 50.000 0.00 0.00 37.19 1.82
187 188 1.761198 GGTTCGCCAGGACCTATTAGT 59.239 52.381 0.00 0.00 37.19 2.24
188 189 2.036089 GAGGTTCGCCAGGACCTATTAG 59.964 54.545 0.00 0.00 40.60 1.73
189 190 2.037144 GAGGTTCGCCAGGACCTATTA 58.963 52.381 0.00 0.00 40.60 0.98
190 191 0.831307 GAGGTTCGCCAGGACCTATT 59.169 55.000 0.00 0.00 40.60 1.73
191 192 0.325296 TGAGGTTCGCCAGGACCTAT 60.325 55.000 0.00 0.00 40.60 2.57
192 193 0.325296 ATGAGGTTCGCCAGGACCTA 60.325 55.000 0.00 0.00 40.60 3.08
193 194 1.613630 ATGAGGTTCGCCAGGACCT 60.614 57.895 0.00 0.00 40.60 3.85
194 195 1.153349 GATGAGGTTCGCCAGGACC 60.153 63.158 0.00 0.00 40.60 4.46
195 196 0.460987 CAGATGAGGTTCGCCAGGAC 60.461 60.000 0.00 0.00 40.60 3.85
196 197 1.617018 CCAGATGAGGTTCGCCAGGA 61.617 60.000 0.00 0.00 40.60 3.86
197 198 1.153289 CCAGATGAGGTTCGCCAGG 60.153 63.158 0.00 0.00 40.60 4.45
198 199 1.817099 GCCAGATGAGGTTCGCCAG 60.817 63.158 0.00 0.00 40.60 4.85
199 200 2.268920 GCCAGATGAGGTTCGCCA 59.731 61.111 0.00 0.00 40.60 5.69
200 201 2.109126 GTGCCAGATGAGGTTCGCC 61.109 63.158 0.00 0.00 37.60 5.54
201 202 0.745845 ATGTGCCAGATGAGGTTCGC 60.746 55.000 0.00 0.00 0.00 4.70
202 203 1.134580 AGATGTGCCAGATGAGGTTCG 60.135 52.381 0.00 0.00 0.00 3.95
203 204 2.706339 AGATGTGCCAGATGAGGTTC 57.294 50.000 0.00 0.00 0.00 3.62
204 205 3.446442 AAAGATGTGCCAGATGAGGTT 57.554 42.857 0.00 0.00 0.00 3.50
205 206 3.446442 AAAAGATGTGCCAGATGAGGT 57.554 42.857 0.00 0.00 0.00 3.85
224 225 7.362920 GCAGAAGGCCTCAAGTATAATGAAAAA 60.363 37.037 5.23 0.00 36.11 1.94
225 226 6.095440 GCAGAAGGCCTCAAGTATAATGAAAA 59.905 38.462 5.23 0.00 36.11 2.29
226 227 5.590259 GCAGAAGGCCTCAAGTATAATGAAA 59.410 40.000 5.23 0.00 36.11 2.69
227 228 5.126067 GCAGAAGGCCTCAAGTATAATGAA 58.874 41.667 5.23 0.00 36.11 2.57
228 229 4.708177 GCAGAAGGCCTCAAGTATAATGA 58.292 43.478 5.23 0.00 36.11 2.57
229 230 3.496130 CGCAGAAGGCCTCAAGTATAATG 59.504 47.826 5.23 0.00 40.31 1.90
230 231 3.134804 ACGCAGAAGGCCTCAAGTATAAT 59.865 43.478 5.23 0.00 40.31 1.28
231 232 2.500098 ACGCAGAAGGCCTCAAGTATAA 59.500 45.455 5.23 0.00 40.31 0.98
232 233 2.108168 ACGCAGAAGGCCTCAAGTATA 58.892 47.619 5.23 0.00 40.31 1.47
233 234 0.905357 ACGCAGAAGGCCTCAAGTAT 59.095 50.000 5.23 0.00 40.31 2.12
234 235 0.037326 CACGCAGAAGGCCTCAAGTA 60.037 55.000 5.23 0.00 40.31 2.24
235 236 1.302033 CACGCAGAAGGCCTCAAGT 60.302 57.895 5.23 0.00 40.31 3.16
236 237 0.037326 TACACGCAGAAGGCCTCAAG 60.037 55.000 5.23 0.00 40.31 3.02
237 238 0.394938 TTACACGCAGAAGGCCTCAA 59.605 50.000 5.23 0.00 40.31 3.02
238 239 0.613260 ATTACACGCAGAAGGCCTCA 59.387 50.000 5.23 0.00 40.31 3.86
239 240 1.739067 AATTACACGCAGAAGGCCTC 58.261 50.000 5.23 0.00 40.31 4.70
240 241 3.343941 TTAATTACACGCAGAAGGCCT 57.656 42.857 0.00 0.00 40.31 5.19
241 242 4.632538 ATTTAATTACACGCAGAAGGCC 57.367 40.909 0.00 0.00 40.31 5.19
242 243 8.531530 CAATTTATTTAATTACACGCAGAAGGC 58.468 33.333 0.00 0.00 34.69 4.35
243 244 8.531530 GCAATTTATTTAATTACACGCAGAAGG 58.468 33.333 0.00 0.00 34.69 3.46
244 245 9.071221 TGCAATTTATTTAATTACACGCAGAAG 57.929 29.630 0.00 0.00 34.69 2.85
245 246 8.972262 TGCAATTTATTTAATTACACGCAGAA 57.028 26.923 0.00 0.00 34.69 3.02
246 247 8.972262 TTGCAATTTATTTAATTACACGCAGA 57.028 26.923 0.00 0.00 34.72 4.26
247 248 9.674208 CTTTGCAATTTATTTAATTACACGCAG 57.326 29.630 0.00 0.00 34.72 5.18
248 249 8.651588 CCTTTGCAATTTATTTAATTACACGCA 58.348 29.630 0.00 0.00 34.69 5.24
249 250 8.113675 CCCTTTGCAATTTATTTAATTACACGC 58.886 33.333 0.00 0.00 34.69 5.34
250 251 9.145865 ACCCTTTGCAATTTATTTAATTACACG 57.854 29.630 0.00 0.00 34.69 4.49
282 283 3.026694 GACCCTAGCATGCTGGATTTTT 58.973 45.455 30.53 8.13 0.00 1.94
283 284 2.025037 TGACCCTAGCATGCTGGATTTT 60.025 45.455 30.53 12.26 0.00 1.82
284 285 1.565759 TGACCCTAGCATGCTGGATTT 59.434 47.619 30.53 14.69 0.00 2.17
285 286 1.142465 CTGACCCTAGCATGCTGGATT 59.858 52.381 30.53 17.16 0.00 3.01
286 287 0.763652 CTGACCCTAGCATGCTGGAT 59.236 55.000 30.53 18.62 0.00 3.41
287 288 1.976132 GCTGACCCTAGCATGCTGGA 61.976 60.000 30.53 11.39 43.17 3.86
288 289 1.525535 GCTGACCCTAGCATGCTGG 60.526 63.158 30.42 26.70 43.17 4.85
289 290 1.525535 GGCTGACCCTAGCATGCTG 60.526 63.158 30.42 18.65 45.46 4.41
290 291 1.980784 CTGGCTGACCCTAGCATGCT 61.981 60.000 25.99 25.99 45.46 3.79
291 292 1.525535 CTGGCTGACCCTAGCATGC 60.526 63.158 10.51 10.51 45.46 4.06
292 293 0.463295 CACTGGCTGACCCTAGCATG 60.463 60.000 0.00 0.00 45.46 4.06
293 294 1.910722 CACTGGCTGACCCTAGCAT 59.089 57.895 0.00 0.00 45.46 3.79
294 295 2.959484 GCACTGGCTGACCCTAGCA 61.959 63.158 0.00 0.00 45.46 3.49
295 296 2.124942 GCACTGGCTGACCCTAGC 60.125 66.667 0.00 0.00 42.94 3.42
296 297 1.557269 AAGGCACTGGCTGACCCTAG 61.557 60.000 5.76 0.00 40.86 3.02
297 298 1.538876 AAGGCACTGGCTGACCCTA 60.539 57.895 5.76 0.00 40.86 3.53
298 299 2.856000 AAGGCACTGGCTGACCCT 60.856 61.111 5.76 0.19 40.86 4.34
299 300 2.674380 CAAGGCACTGGCTGACCC 60.674 66.667 5.76 0.00 40.86 4.46
300 301 2.113986 ACAAGGCACTGGCTGACC 59.886 61.111 5.76 0.00 40.86 4.02
301 302 2.912624 GCACAAGGCACTGGCTGAC 61.913 63.158 5.76 0.00 40.86 3.51
302 303 2.595463 GCACAAGGCACTGGCTGA 60.595 61.111 5.76 0.00 40.86 4.26
311 312 4.329545 TCCCGGAGTGCACAAGGC 62.330 66.667 21.04 5.04 45.13 4.35
312 313 2.358737 GTCCCGGAGTGCACAAGG 60.359 66.667 21.04 17.80 0.00 3.61
313 314 0.606401 AATGTCCCGGAGTGCACAAG 60.606 55.000 21.04 9.39 0.00 3.16
314 315 0.888736 CAATGTCCCGGAGTGCACAA 60.889 55.000 21.04 0.00 0.00 3.33
315 316 1.302431 CAATGTCCCGGAGTGCACA 60.302 57.895 21.04 0.00 0.00 4.57
316 317 1.003839 TCAATGTCCCGGAGTGCAC 60.004 57.895 9.40 9.40 0.00 4.57
317 318 1.003839 GTCAATGTCCCGGAGTGCA 60.004 57.895 0.73 0.00 0.00 4.57
318 319 1.003839 TGTCAATGTCCCGGAGTGC 60.004 57.895 0.73 0.00 0.00 4.40
319 320 0.391661 CCTGTCAATGTCCCGGAGTG 60.392 60.000 0.73 0.00 0.00 3.51
320 321 0.836400 ACCTGTCAATGTCCCGGAGT 60.836 55.000 0.73 0.00 0.00 3.85
321 322 0.391661 CACCTGTCAATGTCCCGGAG 60.392 60.000 0.73 0.00 0.00 4.63
322 323 1.676968 CACCTGTCAATGTCCCGGA 59.323 57.895 0.73 0.00 0.00 5.14
323 324 1.377202 CCACCTGTCAATGTCCCGG 60.377 63.158 0.00 0.00 0.00 5.73
324 325 1.377202 CCCACCTGTCAATGTCCCG 60.377 63.158 0.00 0.00 0.00 5.14
325 326 1.678970 GCCCACCTGTCAATGTCCC 60.679 63.158 0.00 0.00 0.00 4.46
326 327 1.678970 GGCCCACCTGTCAATGTCC 60.679 63.158 0.00 0.00 0.00 4.02
327 328 4.002797 GGCCCACCTGTCAATGTC 57.997 61.111 0.00 0.00 0.00 3.06
349 350 2.563798 TTTTTGCGAGCCAGCCTGG 61.564 57.895 6.32 6.32 41.55 4.45
350 351 3.041701 TTTTTGCGAGCCAGCCTG 58.958 55.556 0.00 0.00 36.02 4.85
367 368 2.961062 CCAGCCATATAGCCTGCTTTTT 59.039 45.455 0.00 0.00 30.08 1.94
368 369 2.175499 TCCAGCCATATAGCCTGCTTTT 59.825 45.455 0.00 0.00 30.08 2.27
369 370 1.776667 TCCAGCCATATAGCCTGCTTT 59.223 47.619 0.00 0.00 30.08 3.51
370 371 1.438469 TCCAGCCATATAGCCTGCTT 58.562 50.000 0.00 0.00 30.08 3.91
371 372 1.666365 ATCCAGCCATATAGCCTGCT 58.334 50.000 0.00 0.00 33.52 4.24
372 373 3.135348 TCATATCCAGCCATATAGCCTGC 59.865 47.826 0.00 0.00 0.00 4.85
373 374 4.652881 TCTCATATCCAGCCATATAGCCTG 59.347 45.833 0.00 0.00 0.00 4.85
374 375 4.888573 TCTCATATCCAGCCATATAGCCT 58.111 43.478 0.00 0.00 0.00 4.58
375 376 4.040217 CCTCTCATATCCAGCCATATAGCC 59.960 50.000 0.00 0.00 0.00 3.93
376 377 4.898265 TCCTCTCATATCCAGCCATATAGC 59.102 45.833 0.00 0.00 0.00 2.97
377 378 7.523544 CGATTCCTCTCATATCCAGCCATATAG 60.524 44.444 0.00 0.00 0.00 1.31
378 379 6.266330 CGATTCCTCTCATATCCAGCCATATA 59.734 42.308 0.00 0.00 0.00 0.86
379 380 5.070180 CGATTCCTCTCATATCCAGCCATAT 59.930 44.000 0.00 0.00 0.00 1.78
380 381 4.403752 CGATTCCTCTCATATCCAGCCATA 59.596 45.833 0.00 0.00 0.00 2.74
381 382 3.197333 CGATTCCTCTCATATCCAGCCAT 59.803 47.826 0.00 0.00 0.00 4.40
382 383 2.564504 CGATTCCTCTCATATCCAGCCA 59.435 50.000 0.00 0.00 0.00 4.75
383 384 2.564947 ACGATTCCTCTCATATCCAGCC 59.435 50.000 0.00 0.00 0.00 4.85
384 385 3.671971 CGACGATTCCTCTCATATCCAGC 60.672 52.174 0.00 0.00 0.00 4.85
385 386 3.504134 ACGACGATTCCTCTCATATCCAG 59.496 47.826 0.00 0.00 0.00 3.86
386 387 3.487372 ACGACGATTCCTCTCATATCCA 58.513 45.455 0.00 0.00 0.00 3.41
387 388 5.821516 ATACGACGATTCCTCTCATATCC 57.178 43.478 0.00 0.00 0.00 2.59
388 389 6.034044 GCAAATACGACGATTCCTCTCATATC 59.966 42.308 0.00 0.00 0.00 1.63
389 390 5.864474 GCAAATACGACGATTCCTCTCATAT 59.136 40.000 0.00 0.00 0.00 1.78
390 391 5.220381 GCAAATACGACGATTCCTCTCATA 58.780 41.667 0.00 0.00 0.00 2.15
391 392 4.051922 GCAAATACGACGATTCCTCTCAT 58.948 43.478 0.00 0.00 0.00 2.90
392 393 3.119280 TGCAAATACGACGATTCCTCTCA 60.119 43.478 0.00 0.00 0.00 3.27
393 394 3.243177 GTGCAAATACGACGATTCCTCTC 59.757 47.826 0.00 0.00 0.00 3.20
394 395 3.187700 GTGCAAATACGACGATTCCTCT 58.812 45.455 0.00 0.00 0.00 3.69
395 396 2.927477 TGTGCAAATACGACGATTCCTC 59.073 45.455 0.00 0.00 0.00 3.71
396 397 2.967362 TGTGCAAATACGACGATTCCT 58.033 42.857 0.00 0.00 0.00 3.36
397 398 3.369756 TCTTGTGCAAATACGACGATTCC 59.630 43.478 0.00 0.00 0.00 3.01
398 399 4.577687 TCTTGTGCAAATACGACGATTC 57.422 40.909 0.00 0.00 0.00 2.52
399 400 4.665645 CGTTCTTGTGCAAATACGACGATT 60.666 41.667 0.00 0.00 32.43 3.34
400 401 3.181534 CGTTCTTGTGCAAATACGACGAT 60.182 43.478 0.00 0.00 32.43 3.73
401 402 2.154198 CGTTCTTGTGCAAATACGACGA 59.846 45.455 0.00 0.00 32.43 4.20
402 403 2.482235 CGTTCTTGTGCAAATACGACG 58.518 47.619 10.81 0.00 32.43 5.12
403 404 2.230864 GCGTTCTTGTGCAAATACGAC 58.769 47.619 16.94 8.62 32.43 4.34
404 405 1.867865 TGCGTTCTTGTGCAAATACGA 59.132 42.857 16.94 5.35 38.34 3.43
405 406 2.308347 TGCGTTCTTGTGCAAATACG 57.692 45.000 11.54 11.54 38.34 3.06
411 412 1.090728 TCAACTTGCGTTCTTGTGCA 58.909 45.000 0.00 0.00 39.81 4.57
412 413 2.187351 TTCAACTTGCGTTCTTGTGC 57.813 45.000 0.00 0.00 0.00 4.57
413 414 3.725740 GTCATTCAACTTGCGTTCTTGTG 59.274 43.478 0.00 0.00 0.00 3.33
414 415 3.243068 GGTCATTCAACTTGCGTTCTTGT 60.243 43.478 0.00 0.00 0.00 3.16
415 416 3.243035 TGGTCATTCAACTTGCGTTCTTG 60.243 43.478 0.00 0.00 0.00 3.02
416 417 2.948979 TGGTCATTCAACTTGCGTTCTT 59.051 40.909 0.00 0.00 0.00 2.52
417 418 2.571212 TGGTCATTCAACTTGCGTTCT 58.429 42.857 0.00 0.00 0.00 3.01
418 419 3.559238 ATGGTCATTCAACTTGCGTTC 57.441 42.857 0.00 0.00 0.00 3.95
419 420 5.446143 TTTATGGTCATTCAACTTGCGTT 57.554 34.783 0.00 0.00 0.00 4.84
420 421 5.643379 ATTTATGGTCATTCAACTTGCGT 57.357 34.783 0.00 0.00 0.00 5.24
421 422 6.092092 TGAATTTATGGTCATTCAACTTGCG 58.908 36.000 0.00 0.00 36.64 4.85
422 423 9.754382 ATATGAATTTATGGTCATTCAACTTGC 57.246 29.630 0.00 0.00 41.58 4.01
453 454 9.442047 TGATGTTCAATTTGGTGTTAAAACTTT 57.558 25.926 0.00 0.00 0.00 2.66
454 455 9.442047 TTGATGTTCAATTTGGTGTTAAAACTT 57.558 25.926 0.00 0.00 30.26 2.66
455 456 9.097257 CTTGATGTTCAATTTGGTGTTAAAACT 57.903 29.630 0.00 0.00 35.59 2.66
456 457 7.850492 GCTTGATGTTCAATTTGGTGTTAAAAC 59.150 33.333 0.00 0.00 35.59 2.43
457 458 7.550551 TGCTTGATGTTCAATTTGGTGTTAAAA 59.449 29.630 0.00 0.00 35.59 1.52
458 459 7.010923 GTGCTTGATGTTCAATTTGGTGTTAAA 59.989 33.333 0.00 0.00 35.59 1.52
459 460 6.478344 GTGCTTGATGTTCAATTTGGTGTTAA 59.522 34.615 0.00 0.00 35.59 2.01
460 461 5.982516 GTGCTTGATGTTCAATTTGGTGTTA 59.017 36.000 0.00 0.00 35.59 2.41
461 462 4.810491 GTGCTTGATGTTCAATTTGGTGTT 59.190 37.500 0.00 0.00 35.59 3.32
462 463 4.141981 TGTGCTTGATGTTCAATTTGGTGT 60.142 37.500 0.00 0.00 35.59 4.16
463 464 4.370049 TGTGCTTGATGTTCAATTTGGTG 58.630 39.130 0.00 0.00 35.59 4.17
464 465 4.669206 TGTGCTTGATGTTCAATTTGGT 57.331 36.364 0.00 0.00 35.59 3.67
465 466 5.051816 ACTTGTGCTTGATGTTCAATTTGG 58.948 37.500 0.00 0.00 35.59 3.28
466 467 6.592798 AACTTGTGCTTGATGTTCAATTTG 57.407 33.333 0.00 0.00 35.59 2.32
467 468 7.119553 ACAAAACTTGTGCTTGATGTTCAATTT 59.880 29.630 0.00 0.00 43.48 1.82
468 469 6.594937 ACAAAACTTGTGCTTGATGTTCAATT 59.405 30.769 0.00 0.00 43.48 2.32
469 470 6.108015 ACAAAACTTGTGCTTGATGTTCAAT 58.892 32.000 0.00 0.00 43.48 2.57
470 471 5.477510 ACAAAACTTGTGCTTGATGTTCAA 58.522 33.333 0.00 0.00 43.48 2.69
471 472 5.070770 ACAAAACTTGTGCTTGATGTTCA 57.929 34.783 0.00 0.00 43.48 3.18
483 484 9.444600 AATATTATCGGTAGTCACAAAACTTGT 57.555 29.630 0.00 0.00 46.75 3.16
486 487 9.538508 GGTAATATTATCGGTAGTCACAAAACT 57.461 33.333 0.00 0.00 0.00 2.66
487 488 9.538508 AGGTAATATTATCGGTAGTCACAAAAC 57.461 33.333 0.00 0.00 0.00 2.43
488 489 9.754382 GAGGTAATATTATCGGTAGTCACAAAA 57.246 33.333 0.00 0.00 0.00 2.44
489 490 9.139734 AGAGGTAATATTATCGGTAGTCACAAA 57.860 33.333 0.00 0.00 0.00 2.83
490 491 8.701908 AGAGGTAATATTATCGGTAGTCACAA 57.298 34.615 0.00 0.00 0.00 3.33
491 492 9.797642 TTAGAGGTAATATTATCGGTAGTCACA 57.202 33.333 0.00 0.00 0.00 3.58
505 506 9.275572 TGGTGGAGTAGTTTTTAGAGGTAATAT 57.724 33.333 0.00 0.00 0.00 1.28
506 507 8.669055 TGGTGGAGTAGTTTTTAGAGGTAATA 57.331 34.615 0.00 0.00 0.00 0.98
507 508 7.563724 TGGTGGAGTAGTTTTTAGAGGTAAT 57.436 36.000 0.00 0.00 0.00 1.89
508 509 6.999705 TGGTGGAGTAGTTTTTAGAGGTAA 57.000 37.500 0.00 0.00 0.00 2.85
509 510 6.999705 TTGGTGGAGTAGTTTTTAGAGGTA 57.000 37.500 0.00 0.00 0.00 3.08
510 511 5.899631 TTGGTGGAGTAGTTTTTAGAGGT 57.100 39.130 0.00 0.00 0.00 3.85
511 512 5.181433 GCTTTGGTGGAGTAGTTTTTAGAGG 59.819 44.000 0.00 0.00 0.00 3.69
512 513 5.763204 TGCTTTGGTGGAGTAGTTTTTAGAG 59.237 40.000 0.00 0.00 0.00 2.43
513 514 5.529800 GTGCTTTGGTGGAGTAGTTTTTAGA 59.470 40.000 0.00 0.00 0.00 2.10
514 515 5.531287 AGTGCTTTGGTGGAGTAGTTTTTAG 59.469 40.000 0.00 0.00 0.00 1.85
515 516 5.442391 AGTGCTTTGGTGGAGTAGTTTTTA 58.558 37.500 0.00 0.00 0.00 1.52
516 517 4.278310 AGTGCTTTGGTGGAGTAGTTTTT 58.722 39.130 0.00 0.00 0.00 1.94
517 518 3.898482 AGTGCTTTGGTGGAGTAGTTTT 58.102 40.909 0.00 0.00 0.00 2.43
518 519 3.577805 AGTGCTTTGGTGGAGTAGTTT 57.422 42.857 0.00 0.00 0.00 2.66
519 520 3.118038 TGAAGTGCTTTGGTGGAGTAGTT 60.118 43.478 0.00 0.00 0.00 2.24
555 556 3.579151 GGTTAGGGTTAGGATCTAGGCTG 59.421 52.174 0.00 0.00 0.00 4.85
580 581 0.988832 TGCTAATCTTGTCCGGGGTT 59.011 50.000 0.00 0.00 0.00 4.11
581 582 0.541863 CTGCTAATCTTGTCCGGGGT 59.458 55.000 0.00 0.00 0.00 4.95
582 583 0.815615 GCTGCTAATCTTGTCCGGGG 60.816 60.000 0.00 0.00 0.00 5.73
583 584 0.179000 AGCTGCTAATCTTGTCCGGG 59.821 55.000 0.00 0.00 0.00 5.73
584 585 1.576356 GAGCTGCTAATCTTGTCCGG 58.424 55.000 0.15 0.00 0.00 5.14
585 586 1.134699 TGGAGCTGCTAATCTTGTCCG 60.135 52.381 6.82 0.00 0.00 4.79
629 630 3.656559 CTGTCATTTCCTGGCTTTTTGG 58.343 45.455 0.00 0.00 0.00 3.28
630 631 3.062042 GCTGTCATTTCCTGGCTTTTTG 58.938 45.455 0.00 0.00 0.00 2.44
640 641 1.452108 CTCCCCCGCTGTCATTTCC 60.452 63.158 0.00 0.00 0.00 3.13
654 655 1.000771 GTCTTTTCCTGCCCCTCCC 60.001 63.158 0.00 0.00 0.00 4.30
660 661 1.067354 CCTGCAATGTCTTTTCCTGCC 60.067 52.381 0.00 0.00 31.92 4.85
675 679 0.693049 GACTTTCTTCCTCCCCTGCA 59.307 55.000 0.00 0.00 0.00 4.41
702 706 2.741486 TACCACGCCCACTTTCTGGC 62.741 60.000 0.00 0.00 44.41 4.85
772 780 1.720694 GAAGACGCCGAGGAGAGAGG 61.721 65.000 0.00 0.00 0.00 3.69
884 893 3.880846 CTCCAGCCAAATCGCGCC 61.881 66.667 0.00 0.00 0.00 6.53
886 895 1.709147 CTTCCTCCAGCCAAATCGCG 61.709 60.000 0.00 0.00 0.00 5.87
897 906 0.408309 TCCTCCTTCGTCTTCCTCCA 59.592 55.000 0.00 0.00 0.00 3.86
912 921 1.567357 ACAGCTTTCCTCCTCTCCTC 58.433 55.000 0.00 0.00 0.00 3.71
955 964 4.309950 ACCAACCTGCCGTCCGTC 62.310 66.667 0.00 0.00 0.00 4.79
956 965 4.619227 CACCAACCTGCCGTCCGT 62.619 66.667 0.00 0.00 0.00 4.69
966 975 1.364721 GCAAAACAACCACACCAACC 58.635 50.000 0.00 0.00 0.00 3.77
1923 1971 1.522806 GTGCTGTTCGTGGTGGTGA 60.523 57.895 0.00 0.00 0.00 4.02
1954 2002 3.128188 CTCCTGCTGCTGCTGCTG 61.128 66.667 27.67 25.97 40.48 4.41
1955 2003 4.411981 CCTCCTGCTGCTGCTGCT 62.412 66.667 27.67 0.00 40.48 4.24
1956 2004 4.405671 TCCTCCTGCTGCTGCTGC 62.406 66.667 22.51 22.51 40.48 5.25
1957 2005 2.436292 GTCCTCCTGCTGCTGCTG 60.436 66.667 17.00 15.58 40.48 4.41
1958 2006 4.079850 CGTCCTCCTGCTGCTGCT 62.080 66.667 17.00 0.00 40.48 4.24
2033 2084 3.738982 TGTGGTGATAACAAGTGGACAG 58.261 45.455 0.00 0.00 0.00 3.51
2168 2220 8.728088 AAATCGACATAAAAACTCATCACAAC 57.272 30.769 0.00 0.00 0.00 3.32
2241 2293 5.116084 TCCCTGATCCATTCCACTAAAAG 57.884 43.478 0.00 0.00 0.00 2.27
2257 2309 1.010046 AGGATGACCCTGAATCCCTGA 59.990 52.381 0.00 0.00 45.61 3.86
2258 2310 1.516110 AGGATGACCCTGAATCCCTG 58.484 55.000 0.00 0.00 45.61 4.45
2299 2351 3.381272 GGGAATTCTGGCGATGATCAAAA 59.619 43.478 0.00 0.00 0.00 2.44
2347 2404 3.564511 CGACAAACGGAATGCAGAAAAT 58.435 40.909 0.00 0.00 38.46 1.82
2362 2419 3.694072 CCCTGCTCAAATAATCCGACAAA 59.306 43.478 0.00 0.00 0.00 2.83
2391 2448 5.796424 AAACAAAAGGCTCATCAGTCAAT 57.204 34.783 0.00 0.00 0.00 2.57
2421 2489 7.390823 TCTCAACTATTGTACACCTGCAATAA 58.609 34.615 0.00 0.00 37.19 1.40
2435 2503 6.292757 CGAAATCATCCAGCTCTCAACTATTG 60.293 42.308 0.00 0.00 0.00 1.90
2441 2509 3.893326 TCGAAATCATCCAGCTCTCAA 57.107 42.857 0.00 0.00 0.00 3.02
2469 2537 4.202461 ACAAATAAGGCACTCACTCAAGGA 60.202 41.667 0.00 0.00 38.49 3.36
2754 2824 8.730680 ACTGTTATGCTGACGAGAAAAATAATT 58.269 29.630 0.00 0.00 0.00 1.40
2758 2830 6.373779 CAACTGTTATGCTGACGAGAAAAAT 58.626 36.000 0.00 0.00 0.00 1.82
2801 2873 5.832539 ATGGATTGGAGGGAGTACATTAG 57.167 43.478 0.00 0.00 0.00 1.73
2817 2889 7.696992 AAAACCACGTCACTTATTATGGATT 57.303 32.000 0.00 0.00 0.00 3.01
2819 2891 7.388437 ACTAAAACCACGTCACTTATTATGGA 58.612 34.615 0.00 0.00 0.00 3.41
2825 2897 7.739498 ATTGAACTAAAACCACGTCACTTAT 57.261 32.000 0.00 0.00 0.00 1.73
2862 2935 4.866921 TCCGATCCATAATAAGTGTCGTG 58.133 43.478 0.00 0.00 0.00 4.35
2864 2937 4.486090 CCTCCGATCCATAATAAGTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
2865 2938 4.527038 TCCCTCCGATCCATAATAAGTGTC 59.473 45.833 0.00 0.00 0.00 3.67
2917 3006 9.930693 CCTTATCCTATTTATAGACAGTTCCAC 57.069 37.037 0.00 0.00 32.05 4.02
2959 3048 2.031870 TCACCATCCCGACTACATCTG 58.968 52.381 0.00 0.00 0.00 2.90
2967 3056 3.934457 AAAACATTTCACCATCCCGAC 57.066 42.857 0.00 0.00 0.00 4.79
2970 3059 5.146010 TGCTAAAAACATTTCACCATCCC 57.854 39.130 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.