Multiple sequence alignment - TraesCS3A01G432800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G432800 chr3A 100.000 2686 0 0 1 2686 674062236 674059551 0.000000e+00 4961.0
1 TraesCS3A01G432800 chr3A 94.074 810 33 7 1880 2686 613364052 613364849 0.000000e+00 1216.0
2 TraesCS3A01G432800 chr3A 89.616 886 72 13 938 1815 674025640 674024767 0.000000e+00 1109.0
3 TraesCS3A01G432800 chr3A 91.629 442 31 3 500 935 674026128 674025687 8.220000e-170 606.0
4 TraesCS3A01G432800 chr3A 79.215 866 108 42 983 1800 673923524 673922683 1.090000e-148 536.0
5 TraesCS3A01G432800 chr3A 80.968 310 33 13 612 920 673923927 673923643 3.480000e-54 222.0
6 TraesCS3A01G432800 chr3A 92.857 56 1 3 452 506 523744976 523744923 7.970000e-11 78.7
7 TraesCS3A01G432800 chr3D 94.310 949 35 4 937 1881 538699668 538698735 0.000000e+00 1435.0
8 TraesCS3A01G432800 chr3D 90.512 938 68 13 937 1859 538687546 538686615 0.000000e+00 1219.0
9 TraesCS3A01G432800 chr3D 93.423 821 38 4 1881 2686 547955378 547954559 0.000000e+00 1203.0
10 TraesCS3A01G432800 chr3D 80.807 917 114 32 803 1679 538574332 538573438 0.000000e+00 662.0
11 TraesCS3A01G432800 chr3D 92.435 423 28 4 500 920 538688021 538687601 3.830000e-168 601.0
12 TraesCS3A01G432800 chr3D 79.245 848 105 43 983 1792 538515809 538514995 2.370000e-145 525.0
13 TraesCS3A01G432800 chr3D 90.351 114 10 1 825 937 538699825 538699712 5.990000e-32 148.0
14 TraesCS3A01G432800 chr6A 94.554 808 36 6 1882 2686 44967004 44966202 0.000000e+00 1242.0
15 TraesCS3A01G432800 chr2A 93.742 815 41 4 1880 2686 197911393 197912205 0.000000e+00 1214.0
16 TraesCS3A01G432800 chr2A 93.688 808 46 3 1882 2686 588427005 588426200 0.000000e+00 1205.0
17 TraesCS3A01G432800 chr5D 93.936 808 37 8 1882 2686 424890595 424889797 0.000000e+00 1210.0
18 TraesCS3A01G432800 chr5D 93.812 808 39 5 1882 2686 554760671 554761470 0.000000e+00 1205.0
19 TraesCS3A01G432800 chr5D 91.803 61 5 0 426 486 439536349 439536409 4.760000e-13 86.1
20 TraesCS3A01G432800 chr1B 93.827 810 40 10 1881 2686 683374128 683374931 0.000000e+00 1210.0
21 TraesCS3A01G432800 chr1B 82.938 211 29 5 108 314 141760277 141760484 1.640000e-42 183.0
22 TraesCS3A01G432800 chr1B 88.136 59 5 2 451 509 446034231 446034175 4.800000e-08 69.4
23 TraesCS3A01G432800 chr3B 89.572 959 77 14 938 1878 713968897 713967944 0.000000e+00 1195.0
24 TraesCS3A01G432800 chr3B 90.435 690 49 8 937 1614 713988336 713987652 0.000000e+00 893.0
25 TraesCS3A01G432800 chr3B 93.394 439 28 1 500 937 713969380 713968942 0.000000e+00 649.0
26 TraesCS3A01G432800 chr3B 80.000 925 110 35 796 1687 713493102 713492220 4.910000e-172 614.0
27 TraesCS3A01G432800 chr3B 98.113 318 5 1 1 318 745544167 745543851 1.090000e-153 553.0
28 TraesCS3A01G432800 chr3B 79.162 859 111 39 983 1800 713392022 713391191 1.420000e-147 532.0
29 TraesCS3A01G432800 chr3B 86.493 422 30 3 500 920 713988786 713988391 3.170000e-119 438.0
30 TraesCS3A01G432800 chr3B 96.104 77 3 0 426 502 672774669 672774745 2.810000e-25 126.0
31 TraesCS3A01G432800 chr3B 86.325 117 12 3 198 314 799298134 799298022 1.010000e-24 124.0
32 TraesCS3A01G432800 chr3B 91.525 59 3 1 426 482 603570368 603570426 2.220000e-11 80.5
33 TraesCS3A01G432800 chr3B 83.146 89 11 3 412 500 666445409 666445493 7.970000e-11 78.7
34 TraesCS3A01G432800 chr2D 92.762 829 53 4 1864 2686 11667694 11666867 0.000000e+00 1192.0
35 TraesCS3A01G432800 chr2D 86.076 79 4 5 422 500 378756856 378756785 7.970000e-11 78.7
36 TraesCS3A01G432800 chr1A 100.000 314 0 0 1 314 426870757 426871070 4.980000e-162 580.0
37 TraesCS3A01G432800 chr6B 96.815 314 10 0 1 314 158200563 158200876 2.370000e-145 525.0
38 TraesCS3A01G432800 chr6B 82.075 212 31 5 108 315 445498194 445498402 9.880000e-40 174.0
39 TraesCS3A01G432800 chr4B 91.628 215 16 2 101 314 24997751 24997538 2.020000e-76 296.0
40 TraesCS3A01G432800 chr7B 87.179 117 11 3 198 314 579409848 579409960 2.170000e-26 130.0
41 TraesCS3A01G432800 chr1D 85.600 125 13 4 198 322 15688303 15688422 2.810000e-25 126.0
42 TraesCS3A01G432800 chr5A 87.952 83 6 4 430 510 703378676 703378596 7.920000e-16 95.3
43 TraesCS3A01G432800 chr5A 81.319 91 12 5 422 510 703316697 703316610 4.800000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G432800 chr3A 674059551 674062236 2685 True 4961.0 4961 100.0000 1 2686 1 chr3A.!!$R2 2685
1 TraesCS3A01G432800 chr3A 613364052 613364849 797 False 1216.0 1216 94.0740 1880 2686 1 chr3A.!!$F1 806
2 TraesCS3A01G432800 chr3A 674024767 674026128 1361 True 857.5 1109 90.6225 500 1815 2 chr3A.!!$R4 1315
3 TraesCS3A01G432800 chr3A 673922683 673923927 1244 True 379.0 536 80.0915 612 1800 2 chr3A.!!$R3 1188
4 TraesCS3A01G432800 chr3D 547954559 547955378 819 True 1203.0 1203 93.4230 1881 2686 1 chr3D.!!$R3 805
5 TraesCS3A01G432800 chr3D 538686615 538688021 1406 True 910.0 1219 91.4735 500 1859 2 chr3D.!!$R4 1359
6 TraesCS3A01G432800 chr3D 538698735 538699825 1090 True 791.5 1435 92.3305 825 1881 2 chr3D.!!$R5 1056
7 TraesCS3A01G432800 chr3D 538573438 538574332 894 True 662.0 662 80.8070 803 1679 1 chr3D.!!$R2 876
8 TraesCS3A01G432800 chr3D 538514995 538515809 814 True 525.0 525 79.2450 983 1792 1 chr3D.!!$R1 809
9 TraesCS3A01G432800 chr6A 44966202 44967004 802 True 1242.0 1242 94.5540 1882 2686 1 chr6A.!!$R1 804
10 TraesCS3A01G432800 chr2A 197911393 197912205 812 False 1214.0 1214 93.7420 1880 2686 1 chr2A.!!$F1 806
11 TraesCS3A01G432800 chr2A 588426200 588427005 805 True 1205.0 1205 93.6880 1882 2686 1 chr2A.!!$R1 804
12 TraesCS3A01G432800 chr5D 424889797 424890595 798 True 1210.0 1210 93.9360 1882 2686 1 chr5D.!!$R1 804
13 TraesCS3A01G432800 chr5D 554760671 554761470 799 False 1205.0 1205 93.8120 1882 2686 1 chr5D.!!$F2 804
14 TraesCS3A01G432800 chr1B 683374128 683374931 803 False 1210.0 1210 93.8270 1881 2686 1 chr1B.!!$F2 805
15 TraesCS3A01G432800 chr3B 713967944 713969380 1436 True 922.0 1195 91.4830 500 1878 2 chr3B.!!$R5 1378
16 TraesCS3A01G432800 chr3B 713987652 713988786 1134 True 665.5 893 88.4640 500 1614 2 chr3B.!!$R6 1114
17 TraesCS3A01G432800 chr3B 713492220 713493102 882 True 614.0 614 80.0000 796 1687 1 chr3B.!!$R2 891
18 TraesCS3A01G432800 chr3B 713391191 713392022 831 True 532.0 532 79.1620 983 1800 1 chr3B.!!$R1 817
19 TraesCS3A01G432800 chr2D 11666867 11667694 827 True 1192.0 1192 92.7620 1864 2686 1 chr2D.!!$R1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 887 0.035056 ACCTCCCAGATTCGCTTTGG 60.035 55.0 0.0 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2295 0.316204 GAACGACGACTTCTTCCCCA 59.684 55.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.760047 GCACACGTCCTGGCCGAT 62.760 66.667 3.30 0.00 0.00 4.18
24 25 2.815211 CACACGTCCTGGCCGATG 60.815 66.667 3.30 1.06 0.00 3.84
25 26 2.994995 ACACGTCCTGGCCGATGA 60.995 61.111 3.30 0.00 0.00 2.92
26 27 2.264480 CACGTCCTGGCCGATGAA 59.736 61.111 3.30 0.00 0.00 2.57
27 28 1.811266 CACGTCCTGGCCGATGAAG 60.811 63.158 3.30 3.99 0.00 3.02
28 29 1.982395 ACGTCCTGGCCGATGAAGA 60.982 57.895 3.30 0.00 0.00 2.87
29 30 1.330655 ACGTCCTGGCCGATGAAGAT 61.331 55.000 3.30 0.00 0.00 2.40
30 31 0.179073 CGTCCTGGCCGATGAAGATT 60.179 55.000 0.00 0.00 0.00 2.40
31 32 1.068588 CGTCCTGGCCGATGAAGATTA 59.931 52.381 0.00 0.00 0.00 1.75
32 33 2.760374 GTCCTGGCCGATGAAGATTAG 58.240 52.381 0.00 0.00 0.00 1.73
33 34 1.070758 TCCTGGCCGATGAAGATTAGC 59.929 52.381 0.00 0.00 0.00 3.09
34 35 1.071385 CCTGGCCGATGAAGATTAGCT 59.929 52.381 0.00 0.00 0.00 3.32
35 36 2.300152 CCTGGCCGATGAAGATTAGCTA 59.700 50.000 0.00 0.00 0.00 3.32
36 37 3.055530 CCTGGCCGATGAAGATTAGCTAT 60.056 47.826 0.00 0.00 0.00 2.97
37 38 4.564406 CCTGGCCGATGAAGATTAGCTATT 60.564 45.833 0.00 0.00 0.00 1.73
38 39 4.973168 TGGCCGATGAAGATTAGCTATTT 58.027 39.130 0.00 0.00 0.00 1.40
39 40 6.109156 TGGCCGATGAAGATTAGCTATTTA 57.891 37.500 0.00 0.00 0.00 1.40
40 41 6.166279 TGGCCGATGAAGATTAGCTATTTAG 58.834 40.000 0.00 0.00 0.00 1.85
51 52 2.701073 GCTATTTAGCTGCTGCATGG 57.299 50.000 18.42 7.12 45.62 3.66
52 53 2.224606 GCTATTTAGCTGCTGCATGGA 58.775 47.619 18.42 1.11 45.62 3.41
53 54 2.031333 GCTATTTAGCTGCTGCATGGAC 60.031 50.000 18.42 0.00 45.62 4.02
54 55 2.133281 ATTTAGCTGCTGCATGGACA 57.867 45.000 18.42 0.00 42.74 4.02
55 56 1.908344 TTTAGCTGCTGCATGGACAA 58.092 45.000 18.42 0.00 42.74 3.18
56 57 1.908344 TTAGCTGCTGCATGGACAAA 58.092 45.000 18.42 0.00 42.74 2.83
57 58 1.167851 TAGCTGCTGCATGGACAAAC 58.832 50.000 18.42 0.00 42.74 2.93
58 59 0.824595 AGCTGCTGCATGGACAAACA 60.825 50.000 18.42 0.00 42.74 2.83
59 60 0.388134 GCTGCTGCATGGACAAACAG 60.388 55.000 11.11 0.00 39.41 3.16
61 62 1.443194 GCTGCATGGACAAACAGCG 60.443 57.895 12.22 0.00 45.23 5.18
62 63 1.855213 GCTGCATGGACAAACAGCGA 61.855 55.000 12.22 0.00 45.23 4.93
63 64 0.806868 CTGCATGGACAAACAGCGAT 59.193 50.000 0.00 0.00 0.00 4.58
64 65 0.522626 TGCATGGACAAACAGCGATG 59.477 50.000 0.00 0.00 0.00 3.84
65 66 0.179156 GCATGGACAAACAGCGATGG 60.179 55.000 5.32 0.00 0.00 3.51
66 67 1.452110 CATGGACAAACAGCGATGGA 58.548 50.000 5.32 0.00 0.00 3.41
67 68 1.399440 CATGGACAAACAGCGATGGAG 59.601 52.381 5.32 0.00 0.00 3.86
68 69 0.684535 TGGACAAACAGCGATGGAGA 59.315 50.000 5.32 0.00 0.00 3.71
69 70 1.278985 TGGACAAACAGCGATGGAGAT 59.721 47.619 5.32 0.00 0.00 2.75
70 71 2.290260 TGGACAAACAGCGATGGAGATT 60.290 45.455 5.32 0.00 0.00 2.40
71 72 2.749621 GGACAAACAGCGATGGAGATTT 59.250 45.455 5.32 0.00 0.00 2.17
72 73 3.426695 GGACAAACAGCGATGGAGATTTG 60.427 47.826 5.32 9.20 34.10 2.32
73 74 2.095059 ACAAACAGCGATGGAGATTTGC 60.095 45.455 5.32 0.00 31.69 3.68
74 75 1.825090 AACAGCGATGGAGATTTGCA 58.175 45.000 5.32 0.00 0.00 4.08
75 76 1.825090 ACAGCGATGGAGATTTGCAA 58.175 45.000 5.32 0.00 0.00 4.08
76 77 1.470098 ACAGCGATGGAGATTTGCAAC 59.530 47.619 5.32 0.00 0.00 4.17
77 78 1.469703 CAGCGATGGAGATTTGCAACA 59.530 47.619 0.00 0.00 0.00 3.33
78 79 1.741706 AGCGATGGAGATTTGCAACAG 59.258 47.619 0.00 0.00 0.00 3.16
79 80 1.739466 GCGATGGAGATTTGCAACAGA 59.261 47.619 0.00 0.00 0.00 3.41
80 81 2.223203 GCGATGGAGATTTGCAACAGAG 60.223 50.000 0.00 0.00 0.00 3.35
81 82 3.264947 CGATGGAGATTTGCAACAGAGA 58.735 45.455 0.00 0.00 0.00 3.10
82 83 3.686241 CGATGGAGATTTGCAACAGAGAA 59.314 43.478 0.00 0.00 0.00 2.87
83 84 4.334759 CGATGGAGATTTGCAACAGAGAAT 59.665 41.667 0.00 0.00 0.00 2.40
84 85 5.525012 CGATGGAGATTTGCAACAGAGAATA 59.475 40.000 0.00 0.00 0.00 1.75
85 86 6.037500 CGATGGAGATTTGCAACAGAGAATAA 59.962 38.462 0.00 0.00 0.00 1.40
86 87 7.414429 CGATGGAGATTTGCAACAGAGAATAAA 60.414 37.037 0.00 0.00 0.00 1.40
87 88 6.913170 TGGAGATTTGCAACAGAGAATAAAC 58.087 36.000 0.00 0.00 0.00 2.01
88 89 6.489700 TGGAGATTTGCAACAGAGAATAAACA 59.510 34.615 0.00 0.00 0.00 2.83
89 90 7.014134 TGGAGATTTGCAACAGAGAATAAACAA 59.986 33.333 0.00 0.00 0.00 2.83
90 91 8.031277 GGAGATTTGCAACAGAGAATAAACAAT 58.969 33.333 0.00 0.00 0.00 2.71
91 92 8.976986 AGATTTGCAACAGAGAATAAACAATC 57.023 30.769 0.00 0.00 0.00 2.67
92 93 8.031277 AGATTTGCAACAGAGAATAAACAATCC 58.969 33.333 0.00 0.00 0.00 3.01
93 94 6.647334 TTGCAACAGAGAATAAACAATCCA 57.353 33.333 0.00 0.00 0.00 3.41
94 95 6.647334 TGCAACAGAGAATAAACAATCCAA 57.353 33.333 0.00 0.00 0.00 3.53
95 96 7.048629 TGCAACAGAGAATAAACAATCCAAA 57.951 32.000 0.00 0.00 0.00 3.28
96 97 6.922957 TGCAACAGAGAATAAACAATCCAAAC 59.077 34.615 0.00 0.00 0.00 2.93
97 98 7.147976 GCAACAGAGAATAAACAATCCAAACT 58.852 34.615 0.00 0.00 0.00 2.66
98 99 8.296713 GCAACAGAGAATAAACAATCCAAACTA 58.703 33.333 0.00 0.00 0.00 2.24
123 124 5.356882 TCGTAAGAGATTTGCAAGTTTGG 57.643 39.130 0.00 0.00 45.01 3.28
124 125 5.060506 TCGTAAGAGATTTGCAAGTTTGGA 58.939 37.500 0.00 0.00 45.01 3.53
125 126 5.529430 TCGTAAGAGATTTGCAAGTTTGGAA 59.471 36.000 0.00 0.00 45.01 3.53
126 127 6.206634 TCGTAAGAGATTTGCAAGTTTGGAAT 59.793 34.615 0.00 0.00 45.01 3.01
127 128 6.863126 CGTAAGAGATTTGCAAGTTTGGAATT 59.137 34.615 0.00 0.00 37.76 2.17
128 129 7.148918 CGTAAGAGATTTGCAAGTTTGGAATTG 60.149 37.037 0.00 0.00 37.76 2.32
135 136 3.374220 CAAGTTTGGAATTGCAGCAGA 57.626 42.857 0.00 0.00 0.00 4.26
136 137 3.314553 CAAGTTTGGAATTGCAGCAGAG 58.685 45.455 0.00 0.00 0.00 3.35
137 138 2.867624 AGTTTGGAATTGCAGCAGAGA 58.132 42.857 0.00 0.00 0.00 3.10
138 139 2.818432 AGTTTGGAATTGCAGCAGAGAG 59.182 45.455 0.00 0.00 0.00 3.20
139 140 2.816087 GTTTGGAATTGCAGCAGAGAGA 59.184 45.455 0.00 0.00 0.00 3.10
140 141 2.865119 TGGAATTGCAGCAGAGAGAA 57.135 45.000 0.00 0.00 0.00 2.87
141 142 3.361281 TGGAATTGCAGCAGAGAGAAT 57.639 42.857 0.00 0.00 0.00 2.40
142 143 4.492494 TGGAATTGCAGCAGAGAGAATA 57.508 40.909 0.00 0.00 0.00 1.75
143 144 4.847198 TGGAATTGCAGCAGAGAGAATAA 58.153 39.130 0.00 0.00 0.00 1.40
144 145 5.255687 TGGAATTGCAGCAGAGAGAATAAA 58.744 37.500 0.00 0.00 0.00 1.40
145 146 5.124457 TGGAATTGCAGCAGAGAGAATAAAC 59.876 40.000 0.00 0.00 0.00 2.01
146 147 5.124457 GGAATTGCAGCAGAGAGAATAAACA 59.876 40.000 0.00 0.00 0.00 2.83
147 148 6.349611 GGAATTGCAGCAGAGAGAATAAACAA 60.350 38.462 0.00 0.00 0.00 2.83
148 149 5.362556 TTGCAGCAGAGAGAATAAACAAC 57.637 39.130 0.00 0.00 0.00 3.32
149 150 4.388485 TGCAGCAGAGAGAATAAACAACA 58.612 39.130 0.00 0.00 0.00 3.33
150 151 4.821260 TGCAGCAGAGAGAATAAACAACAA 59.179 37.500 0.00 0.00 0.00 2.83
151 152 5.299028 TGCAGCAGAGAGAATAAACAACAAA 59.701 36.000 0.00 0.00 0.00 2.83
152 153 6.016024 TGCAGCAGAGAGAATAAACAACAAAT 60.016 34.615 0.00 0.00 0.00 2.32
153 154 7.174772 TGCAGCAGAGAGAATAAACAACAAATA 59.825 33.333 0.00 0.00 0.00 1.40
154 155 8.023128 GCAGCAGAGAGAATAAACAACAAATAA 58.977 33.333 0.00 0.00 0.00 1.40
155 156 9.552114 CAGCAGAGAGAATAAACAACAAATAAG 57.448 33.333 0.00 0.00 0.00 1.73
156 157 9.289782 AGCAGAGAGAATAAACAACAAATAAGT 57.710 29.630 0.00 0.00 0.00 2.24
157 158 9.899226 GCAGAGAGAATAAACAACAAATAAGTT 57.101 29.630 0.00 0.00 0.00 2.66
179 180 7.721402 AGTTAGATATAGCACAGAGAGTTTGG 58.279 38.462 0.00 0.00 0.00 3.28
180 181 7.561722 AGTTAGATATAGCACAGAGAGTTTGGA 59.438 37.037 0.00 0.00 0.00 3.53
181 182 6.798427 AGATATAGCACAGAGAGTTTGGAA 57.202 37.500 0.00 0.00 0.00 3.53
182 183 6.815089 AGATATAGCACAGAGAGTTTGGAAG 58.185 40.000 0.00 0.00 0.00 3.46
183 184 6.609212 AGATATAGCACAGAGAGTTTGGAAGA 59.391 38.462 0.00 0.00 0.00 2.87
184 185 3.845781 AGCACAGAGAGTTTGGAAGAA 57.154 42.857 0.00 0.00 0.00 2.52
185 186 4.156455 AGCACAGAGAGTTTGGAAGAAA 57.844 40.909 0.00 0.00 0.00 2.52
186 187 4.526970 AGCACAGAGAGTTTGGAAGAAAA 58.473 39.130 0.00 0.00 0.00 2.29
187 188 4.578105 AGCACAGAGAGTTTGGAAGAAAAG 59.422 41.667 0.00 0.00 0.00 2.27
188 189 4.791088 GCACAGAGAGTTTGGAAGAAAAGC 60.791 45.833 0.00 0.00 0.00 3.51
189 190 3.561725 ACAGAGAGTTTGGAAGAAAAGCG 59.438 43.478 0.00 0.00 0.00 4.68
190 191 3.809832 CAGAGAGTTTGGAAGAAAAGCGA 59.190 43.478 0.00 0.00 0.00 4.93
191 192 4.453819 CAGAGAGTTTGGAAGAAAAGCGAT 59.546 41.667 0.00 0.00 0.00 4.58
192 193 4.693095 AGAGAGTTTGGAAGAAAAGCGATC 59.307 41.667 0.00 0.00 0.00 3.69
193 194 3.753797 AGAGTTTGGAAGAAAAGCGATCC 59.246 43.478 0.00 0.00 0.00 3.36
194 195 3.486383 AGTTTGGAAGAAAAGCGATCCA 58.514 40.909 0.00 0.00 40.10 3.41
195 196 4.082125 AGTTTGGAAGAAAAGCGATCCAT 58.918 39.130 0.00 0.00 41.36 3.41
196 197 4.524328 AGTTTGGAAGAAAAGCGATCCATT 59.476 37.500 0.00 0.00 41.36 3.16
197 198 4.439305 TTGGAAGAAAAGCGATCCATTG 57.561 40.909 0.00 0.00 41.36 2.82
198 199 3.684908 TGGAAGAAAAGCGATCCATTGA 58.315 40.909 0.00 0.00 37.05 2.57
199 200 4.078537 TGGAAGAAAAGCGATCCATTGAA 58.921 39.130 0.00 0.00 37.05 2.69
200 201 4.156556 TGGAAGAAAAGCGATCCATTGAAG 59.843 41.667 0.00 0.00 37.05 3.02
201 202 4.439289 GGAAGAAAAGCGATCCATTGAAGG 60.439 45.833 0.00 0.00 32.08 3.46
202 203 3.955471 AGAAAAGCGATCCATTGAAGGA 58.045 40.909 0.00 0.00 43.01 3.36
236 237 8.667076 AGAATGAATTAATTAATTGCTTGGGC 57.333 30.769 24.60 11.09 36.13 5.36
237 238 7.716560 AGAATGAATTAATTAATTGCTTGGGCC 59.283 33.333 24.60 10.48 36.13 5.80
238 239 6.558488 TGAATTAATTAATTGCTTGGGCCT 57.442 33.333 24.60 0.34 36.13 5.19
239 240 7.667575 TGAATTAATTAATTGCTTGGGCCTA 57.332 32.000 24.60 0.00 36.13 3.93
240 241 7.496747 TGAATTAATTAATTGCTTGGGCCTAC 58.503 34.615 24.60 8.86 36.13 3.18
241 242 7.124901 TGAATTAATTAATTGCTTGGGCCTACA 59.875 33.333 24.60 10.96 36.13 2.74
242 243 6.859112 TTAATTAATTGCTTGGGCCTACAA 57.141 33.333 11.05 7.01 37.74 2.41
243 244 5.753721 AATTAATTGCTTGGGCCTACAAA 57.246 34.783 4.53 0.00 37.74 2.83
244 245 4.529109 TTAATTGCTTGGGCCTACAAAC 57.471 40.909 4.53 0.00 37.74 2.93
245 246 2.008242 ATTGCTTGGGCCTACAAACA 57.992 45.000 4.53 0.00 37.74 2.83
246 247 2.008242 TTGCTTGGGCCTACAAACAT 57.992 45.000 4.53 0.00 37.74 2.71
247 248 2.889170 TGCTTGGGCCTACAAACATA 57.111 45.000 4.53 0.00 37.74 2.29
248 249 2.442413 TGCTTGGGCCTACAAACATAC 58.558 47.619 4.53 0.00 37.74 2.39
249 250 1.400494 GCTTGGGCCTACAAACATACG 59.600 52.381 4.53 0.00 0.00 3.06
250 251 2.706890 CTTGGGCCTACAAACATACGT 58.293 47.619 4.53 0.00 0.00 3.57
251 252 2.102070 TGGGCCTACAAACATACGTG 57.898 50.000 4.53 0.00 0.00 4.49
252 253 1.339247 TGGGCCTACAAACATACGTGG 60.339 52.381 4.53 0.00 0.00 4.94
253 254 0.730840 GGCCTACAAACATACGTGGC 59.269 55.000 0.00 0.00 38.28 5.01
254 255 1.444836 GCCTACAAACATACGTGGCA 58.555 50.000 0.00 0.00 38.79 4.92
255 256 2.014128 GCCTACAAACATACGTGGCAT 58.986 47.619 0.00 0.00 38.79 4.40
256 257 2.223249 GCCTACAAACATACGTGGCATG 60.223 50.000 4.87 4.87 38.79 4.06
257 258 3.006940 CCTACAAACATACGTGGCATGT 58.993 45.455 17.65 17.65 38.25 3.21
258 259 2.987413 ACAAACATACGTGGCATGTG 57.013 45.000 22.23 9.09 36.74 3.21
259 260 1.068610 ACAAACATACGTGGCATGTGC 60.069 47.619 22.23 0.00 36.74 4.57
260 261 1.199789 CAAACATACGTGGCATGTGCT 59.800 47.619 22.23 6.76 41.70 4.40
261 262 1.086696 AACATACGTGGCATGTGCTC 58.913 50.000 22.23 0.00 41.70 4.26
262 263 0.036483 ACATACGTGGCATGTGCTCA 60.036 50.000 22.23 2.31 41.70 4.26
263 264 1.302366 CATACGTGGCATGTGCTCAT 58.698 50.000 22.23 4.81 41.70 2.90
264 265 1.672363 CATACGTGGCATGTGCTCATT 59.328 47.619 22.23 0.00 41.70 2.57
265 266 1.085893 TACGTGGCATGTGCTCATTG 58.914 50.000 22.23 0.00 41.70 2.82
266 267 1.138036 CGTGGCATGTGCTCATTGG 59.862 57.895 4.84 0.00 41.70 3.16
267 268 1.514087 GTGGCATGTGCTCATTGGG 59.486 57.895 4.84 0.00 41.70 4.12
268 269 2.352821 TGGCATGTGCTCATTGGGC 61.353 57.895 0.18 0.18 41.70 5.36
269 270 2.497770 GCATGTGCTCATTGGGCC 59.502 61.111 5.96 0.00 38.21 5.80
270 271 2.056223 GCATGTGCTCATTGGGCCT 61.056 57.895 5.96 0.00 38.21 5.19
271 272 1.813859 CATGTGCTCATTGGGCCTG 59.186 57.895 5.96 0.00 31.15 4.85
272 273 2.056223 ATGTGCTCATTGGGCCTGC 61.056 57.895 5.96 2.08 0.00 4.85
273 274 2.677524 GTGCTCATTGGGCCTGCA 60.678 61.111 5.96 4.88 0.00 4.41
274 275 2.677524 TGCTCATTGGGCCTGCAC 60.678 61.111 5.96 0.00 0.00 4.57
275 276 3.455469 GCTCATTGGGCCTGCACC 61.455 66.667 4.53 0.00 0.00 5.01
276 277 2.036098 CTCATTGGGCCTGCACCA 59.964 61.111 4.53 0.00 35.88 4.17
277 278 1.380785 CTCATTGGGCCTGCACCAT 60.381 57.895 4.53 0.00 37.93 3.55
278 279 0.106569 CTCATTGGGCCTGCACCATA 60.107 55.000 4.53 0.00 37.93 2.74
279 280 0.334335 TCATTGGGCCTGCACCATAA 59.666 50.000 4.53 0.00 37.93 1.90
280 281 1.063038 TCATTGGGCCTGCACCATAAT 60.063 47.619 4.53 0.00 37.93 1.28
281 282 2.176581 TCATTGGGCCTGCACCATAATA 59.823 45.455 4.53 0.00 37.93 0.98
282 283 2.363306 TTGGGCCTGCACCATAATAG 57.637 50.000 4.53 0.00 37.93 1.73
283 284 0.478072 TGGGCCTGCACCATAATAGG 59.522 55.000 4.53 0.00 31.83 2.57
284 285 0.478507 GGGCCTGCACCATAATAGGT 59.521 55.000 0.84 0.00 44.48 3.08
292 293 2.614829 ACCATAATAGGTGCGGTGAC 57.385 50.000 0.00 0.00 41.30 3.67
293 294 1.140252 ACCATAATAGGTGCGGTGACC 59.860 52.381 0.00 0.00 41.30 4.02
294 295 1.542547 CCATAATAGGTGCGGTGACCC 60.543 57.143 0.00 0.00 36.56 4.46
295 296 0.763035 ATAATAGGTGCGGTGACCCC 59.237 55.000 0.00 0.00 36.56 4.95
296 297 0.325860 TAATAGGTGCGGTGACCCCT 60.326 55.000 3.40 3.40 36.56 4.79
297 298 1.910580 AATAGGTGCGGTGACCCCTG 61.911 60.000 8.02 0.00 36.56 4.45
305 306 2.348998 GTGACCCCTGCACCTGAG 59.651 66.667 0.00 0.00 0.00 3.35
306 307 3.640407 TGACCCCTGCACCTGAGC 61.640 66.667 0.00 0.00 0.00 4.26
307 308 4.416738 GACCCCTGCACCTGAGCC 62.417 72.222 0.00 0.00 0.00 4.70
310 311 3.970410 CCCTGCACCTGAGCCCAA 61.970 66.667 0.00 0.00 0.00 4.12
311 312 2.674380 CCTGCACCTGAGCCCAAC 60.674 66.667 0.00 0.00 0.00 3.77
312 313 2.674380 CTGCACCTGAGCCCAACC 60.674 66.667 0.00 0.00 0.00 3.77
313 314 4.284550 TGCACCTGAGCCCAACCC 62.285 66.667 0.00 0.00 0.00 4.11
315 316 3.636231 CACCTGAGCCCAACCCGA 61.636 66.667 0.00 0.00 0.00 5.14
316 317 3.637273 ACCTGAGCCCAACCCGAC 61.637 66.667 0.00 0.00 0.00 4.79
317 318 3.322466 CCTGAGCCCAACCCGACT 61.322 66.667 0.00 0.00 0.00 4.18
318 319 2.750350 CTGAGCCCAACCCGACTT 59.250 61.111 0.00 0.00 0.00 3.01
319 320 1.672356 CTGAGCCCAACCCGACTTG 60.672 63.158 0.00 0.00 0.00 3.16
320 321 2.359975 GAGCCCAACCCGACTTGG 60.360 66.667 4.50 4.50 40.57 3.61
321 322 2.852075 AGCCCAACCCGACTTGGA 60.852 61.111 11.52 0.00 43.19 3.53
322 323 2.359975 GCCCAACCCGACTTGGAG 60.360 66.667 11.52 4.62 43.19 3.86
323 324 2.351276 CCCAACCCGACTTGGAGG 59.649 66.667 11.52 0.14 43.19 4.30
328 329 3.330720 CCCGACTTGGAGGGGCTT 61.331 66.667 0.00 0.00 43.90 4.35
329 330 2.269241 CCGACTTGGAGGGGCTTC 59.731 66.667 0.00 0.00 42.00 3.86
330 331 2.294078 CCGACTTGGAGGGGCTTCT 61.294 63.158 0.00 0.00 42.00 2.85
331 332 1.679898 CGACTTGGAGGGGCTTCTT 59.320 57.895 0.00 0.00 0.00 2.52
332 333 0.902531 CGACTTGGAGGGGCTTCTTA 59.097 55.000 0.00 0.00 0.00 2.10
333 334 1.486726 CGACTTGGAGGGGCTTCTTAT 59.513 52.381 0.00 0.00 0.00 1.73
334 335 2.483889 CGACTTGGAGGGGCTTCTTATC 60.484 54.545 0.00 0.00 0.00 1.75
335 336 1.847088 ACTTGGAGGGGCTTCTTATCC 59.153 52.381 0.00 0.00 0.00 2.59
336 337 1.143889 CTTGGAGGGGCTTCTTATCCC 59.856 57.143 0.00 0.00 41.87 3.85
337 338 0.045623 TGGAGGGGCTTCTTATCCCA 59.954 55.000 0.00 0.00 44.43 4.37
338 339 1.346465 TGGAGGGGCTTCTTATCCCAT 60.346 52.381 0.00 0.00 44.43 4.00
339 340 2.869101 GAGGGGCTTCTTATCCCATC 57.131 55.000 0.00 0.00 44.70 3.51
340 341 1.352687 GAGGGGCTTCTTATCCCATCC 59.647 57.143 0.82 0.00 45.05 3.51
341 342 1.060244 AGGGGCTTCTTATCCCATCCT 60.060 52.381 0.00 0.00 44.43 3.24
342 343 1.352687 GGGGCTTCTTATCCCATCCTC 59.647 57.143 0.00 0.00 44.43 3.71
343 344 2.343625 GGGCTTCTTATCCCATCCTCT 58.656 52.381 0.00 0.00 42.18 3.69
344 345 2.713708 GGGCTTCTTATCCCATCCTCTT 59.286 50.000 0.00 0.00 42.18 2.85
345 346 3.139211 GGGCTTCTTATCCCATCCTCTTT 59.861 47.826 0.00 0.00 42.18 2.52
346 347 4.386873 GGGCTTCTTATCCCATCCTCTTTT 60.387 45.833 0.00 0.00 42.18 2.27
347 348 5.204292 GGCTTCTTATCCCATCCTCTTTTT 58.796 41.667 0.00 0.00 0.00 1.94
370 371 9.814507 TTTTTAATACATAGTACGTGCACTTTG 57.185 29.630 16.19 6.88 34.71 2.77
371 372 8.537049 TTTAATACATAGTACGTGCACTTTGT 57.463 30.769 16.19 15.69 41.58 2.83
372 373 6.403333 AATACATAGTACGTGCACTTTGTG 57.597 37.500 18.89 8.53 39.85 3.33
385 386 4.383774 CACTTTGTGCGTATTCGAGAAA 57.616 40.909 0.00 0.00 39.71 2.52
386 387 4.768145 CACTTTGTGCGTATTCGAGAAAA 58.232 39.130 0.00 0.00 39.71 2.29
387 388 5.201910 CACTTTGTGCGTATTCGAGAAAAA 58.798 37.500 0.00 0.00 39.71 1.94
528 529 5.676552 ACATGTACAGAACCTACAACAACA 58.323 37.500 0.00 0.00 0.00 3.33
556 557 5.183530 AGGAGTTGATGGATGATTCACAA 57.816 39.130 0.00 0.00 0.00 3.33
574 575 4.651503 TCACAAGGGATAGAGAGGAATCAC 59.348 45.833 0.00 0.00 0.00 3.06
578 579 4.746466 AGGGATAGAGAGGAATCACGAAT 58.254 43.478 0.00 0.00 30.54 3.34
651 653 4.213564 TCTCTTTCTGATCTGGAAAGGC 57.786 45.455 26.05 0.00 45.49 4.35
721 723 6.560711 GTGTATTTTTGTCACAAGACCAACT 58.439 36.000 0.00 0.00 44.33 3.16
724 726 5.461032 TTTTTGTCACAAGACCAACTGTT 57.539 34.783 0.00 0.00 44.33 3.16
725 727 4.695217 TTTGTCACAAGACCAACTGTTC 57.305 40.909 0.00 0.00 44.33 3.18
776 778 4.913376 GATGCAATCATACAGACCACAAC 58.087 43.478 0.00 0.00 44.70 3.32
841 849 2.367202 GGACCCTCCCGAAGCATGA 61.367 63.158 0.00 0.00 0.00 3.07
850 858 1.139654 CCCGAAGCATGAGAATCTCCA 59.860 52.381 7.91 0.00 34.92 3.86
873 881 0.898320 AGTGACACCTCCCAGATTCG 59.102 55.000 0.84 0.00 0.00 3.34
879 887 0.035056 ACCTCCCAGATTCGCTTTGG 60.035 55.000 0.00 0.00 0.00 3.28
972 1037 3.129287 CCAACCAGTATAAAAGGCAGCTG 59.871 47.826 10.11 10.11 0.00 4.24
1102 1186 3.521796 GCCAGGGCGATCAAAGGC 61.522 66.667 0.00 0.00 34.71 4.35
1186 1273 4.697756 GCACACGCCTACCAGCCA 62.698 66.667 0.00 0.00 0.00 4.75
1197 1284 1.633945 CTACCAGCCAAGGTACCCTTT 59.366 52.381 8.74 0.00 41.69 3.11
1259 1346 2.043852 ATGTCGACGAGAGGGCCT 60.044 61.111 5.25 5.25 0.00 5.19
1570 1699 6.535150 GTGAATACGATCCTTCATCAAAGTGA 59.465 38.462 0.00 0.00 34.18 3.41
1590 1726 2.490328 AGTTTGTGTGCCGTTCATTG 57.510 45.000 0.00 0.00 0.00 2.82
1691 1833 5.756347 TCCATGTGCCGTATCAAAATAGTAC 59.244 40.000 0.00 0.00 0.00 2.73
1692 1834 5.758296 CCATGTGCCGTATCAAAATAGTACT 59.242 40.000 0.00 0.00 0.00 2.73
1800 1955 6.747280 CGTTTGGATGAAGCACCTTAATTTAG 59.253 38.462 0.00 0.00 0.00 1.85
2014 2170 4.342862 ACATATCACATCTAGGGCACAC 57.657 45.455 0.00 0.00 0.00 3.82
2023 2179 4.471386 ACATCTAGGGCACACACTAGAAAT 59.529 41.667 8.98 0.00 46.12 2.17
2137 2293 1.667154 CGAGGATGAGGTTGCCGAGA 61.667 60.000 0.00 0.00 0.00 4.04
2139 2295 1.139853 GAGGATGAGGTTGCCGAGATT 59.860 52.381 0.00 0.00 0.00 2.40
2222 2378 2.123077 CCTGATCGCCCCTCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
2332 2490 1.089481 GGCGCAATGATCTGGAACGA 61.089 55.000 10.83 0.00 0.00 3.85
2472 2633 5.596268 GGAAACGGTTCAGTAATTAACGT 57.404 39.130 16.38 0.00 35.25 3.99
2556 2717 0.031857 CATAGCTCTGTCCTCGGCTG 59.968 60.000 0.00 0.00 36.40 4.85
2593 2754 3.690280 TCGTGACGAGGCATGGCA 61.690 61.111 22.64 0.00 0.00 4.92
2647 2828 4.022068 GGTCTCCTCTTCTCATGCTCATAG 60.022 50.000 0.00 0.00 0.00 2.23
2651 2832 4.039004 TCCTCTTCTCATGCTCATAGAAGC 59.961 45.833 13.63 0.79 43.80 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.760047 ATCGGCCAGGACGTGTGC 62.760 66.667 16.39 0.00 34.61 4.57
7 8 2.779951 TTCATCGGCCAGGACGTGTG 62.780 60.000 16.39 15.21 34.61 3.82
10 11 1.330655 ATCTTCATCGGCCAGGACGT 61.331 55.000 16.39 0.00 34.61 4.34
11 12 0.179073 AATCTTCATCGGCCAGGACG 60.179 55.000 9.10 9.10 34.09 4.79
12 13 2.760374 CTAATCTTCATCGGCCAGGAC 58.240 52.381 2.24 0.00 0.00 3.85
13 14 1.070758 GCTAATCTTCATCGGCCAGGA 59.929 52.381 2.24 0.00 0.00 3.86
14 15 1.071385 AGCTAATCTTCATCGGCCAGG 59.929 52.381 2.24 0.00 0.00 4.45
15 16 2.540265 AGCTAATCTTCATCGGCCAG 57.460 50.000 2.24 0.00 0.00 4.85
16 17 4.623932 AATAGCTAATCTTCATCGGCCA 57.376 40.909 2.24 0.00 0.00 5.36
17 18 5.064071 GCTAAATAGCTAATCTTCATCGGCC 59.936 44.000 0.00 0.00 45.62 6.13
18 19 6.100792 GCTAAATAGCTAATCTTCATCGGC 57.899 41.667 0.00 0.00 45.62 5.54
33 34 3.208594 TGTCCATGCAGCAGCTAAATAG 58.791 45.455 0.00 0.00 42.74 1.73
34 35 3.280197 TGTCCATGCAGCAGCTAAATA 57.720 42.857 0.00 0.00 42.74 1.40
35 36 2.133281 TGTCCATGCAGCAGCTAAAT 57.867 45.000 0.00 0.00 42.74 1.40
36 37 1.908344 TTGTCCATGCAGCAGCTAAA 58.092 45.000 0.00 0.00 42.74 1.85
37 38 1.541147 GTTTGTCCATGCAGCAGCTAA 59.459 47.619 0.00 0.00 42.74 3.09
38 39 1.167851 GTTTGTCCATGCAGCAGCTA 58.832 50.000 0.00 0.00 42.74 3.32
39 40 0.824595 TGTTTGTCCATGCAGCAGCT 60.825 50.000 0.00 0.00 42.74 4.24
40 41 0.388134 CTGTTTGTCCATGCAGCAGC 60.388 55.000 0.00 0.00 42.57 5.25
41 42 3.786809 CTGTTTGTCCATGCAGCAG 57.213 52.632 0.00 0.00 0.00 4.24
43 44 4.565531 GCTGTTTGTCCATGCAGC 57.434 55.556 5.21 5.21 45.70 5.25
44 45 0.806868 ATCGCTGTTTGTCCATGCAG 59.193 50.000 0.00 0.00 0.00 4.41
45 46 0.522626 CATCGCTGTTTGTCCATGCA 59.477 50.000 0.00 0.00 0.00 3.96
46 47 0.179156 CCATCGCTGTTTGTCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
47 48 1.399440 CTCCATCGCTGTTTGTCCATG 59.601 52.381 0.00 0.00 0.00 3.66
48 49 1.278985 TCTCCATCGCTGTTTGTCCAT 59.721 47.619 0.00 0.00 0.00 3.41
49 50 0.684535 TCTCCATCGCTGTTTGTCCA 59.315 50.000 0.00 0.00 0.00 4.02
50 51 2.029838 ATCTCCATCGCTGTTTGTCC 57.970 50.000 0.00 0.00 0.00 4.02
51 52 3.751621 CAAATCTCCATCGCTGTTTGTC 58.248 45.455 0.00 0.00 0.00 3.18
52 53 2.095059 GCAAATCTCCATCGCTGTTTGT 60.095 45.455 0.00 0.00 0.00 2.83
53 54 2.095110 TGCAAATCTCCATCGCTGTTTG 60.095 45.455 0.00 0.00 0.00 2.93
54 55 2.161855 TGCAAATCTCCATCGCTGTTT 58.838 42.857 0.00 0.00 0.00 2.83
55 56 1.825090 TGCAAATCTCCATCGCTGTT 58.175 45.000 0.00 0.00 0.00 3.16
56 57 1.470098 GTTGCAAATCTCCATCGCTGT 59.530 47.619 0.00 0.00 0.00 4.40
57 58 1.469703 TGTTGCAAATCTCCATCGCTG 59.530 47.619 0.00 0.00 0.00 5.18
58 59 1.741706 CTGTTGCAAATCTCCATCGCT 59.258 47.619 0.00 0.00 0.00 4.93
59 60 1.739466 TCTGTTGCAAATCTCCATCGC 59.261 47.619 0.00 0.00 0.00 4.58
60 61 3.264947 TCTCTGTTGCAAATCTCCATCG 58.735 45.455 0.00 0.00 0.00 3.84
61 62 5.831702 ATTCTCTGTTGCAAATCTCCATC 57.168 39.130 0.00 0.00 0.00 3.51
62 63 7.177216 TGTTTATTCTCTGTTGCAAATCTCCAT 59.823 33.333 0.00 0.00 0.00 3.41
63 64 6.489700 TGTTTATTCTCTGTTGCAAATCTCCA 59.510 34.615 0.00 0.00 0.00 3.86
64 65 6.913170 TGTTTATTCTCTGTTGCAAATCTCC 58.087 36.000 0.00 0.00 0.00 3.71
65 66 8.976986 ATTGTTTATTCTCTGTTGCAAATCTC 57.023 30.769 0.00 0.00 0.00 2.75
66 67 8.031277 GGATTGTTTATTCTCTGTTGCAAATCT 58.969 33.333 0.00 0.00 0.00 2.40
67 68 7.814107 TGGATTGTTTATTCTCTGTTGCAAATC 59.186 33.333 0.00 0.00 0.00 2.17
68 69 7.669427 TGGATTGTTTATTCTCTGTTGCAAAT 58.331 30.769 0.00 0.00 0.00 2.32
69 70 7.048629 TGGATTGTTTATTCTCTGTTGCAAA 57.951 32.000 0.00 0.00 0.00 3.68
70 71 6.647334 TGGATTGTTTATTCTCTGTTGCAA 57.353 33.333 0.00 0.00 0.00 4.08
71 72 6.647334 TTGGATTGTTTATTCTCTGTTGCA 57.353 33.333 0.00 0.00 0.00 4.08
72 73 7.147976 AGTTTGGATTGTTTATTCTCTGTTGC 58.852 34.615 0.00 0.00 0.00 4.17
84 85 9.280174 TCTCTTACGAAATAGTTTGGATTGTTT 57.720 29.630 0.00 0.00 0.00 2.83
85 86 8.842358 TCTCTTACGAAATAGTTTGGATTGTT 57.158 30.769 0.00 0.00 0.00 2.83
86 87 9.449719 AATCTCTTACGAAATAGTTTGGATTGT 57.550 29.630 0.00 0.00 0.00 2.71
89 90 8.398665 GCAAATCTCTTACGAAATAGTTTGGAT 58.601 33.333 0.00 0.00 0.00 3.41
90 91 7.389330 TGCAAATCTCTTACGAAATAGTTTGGA 59.611 33.333 0.00 0.00 0.00 3.53
91 92 7.526608 TGCAAATCTCTTACGAAATAGTTTGG 58.473 34.615 0.00 0.00 0.00 3.28
92 93 8.948853 TTGCAAATCTCTTACGAAATAGTTTG 57.051 30.769 0.00 0.00 0.00 2.93
93 94 8.784043 ACTTGCAAATCTCTTACGAAATAGTTT 58.216 29.630 0.00 0.00 0.00 2.66
94 95 8.324163 ACTTGCAAATCTCTTACGAAATAGTT 57.676 30.769 0.00 0.00 0.00 2.24
95 96 7.907214 ACTTGCAAATCTCTTACGAAATAGT 57.093 32.000 0.00 0.00 0.00 2.12
96 97 9.055248 CAAACTTGCAAATCTCTTACGAAATAG 57.945 33.333 0.00 0.00 0.00 1.73
97 98 8.020819 CCAAACTTGCAAATCTCTTACGAAATA 58.979 33.333 0.00 0.00 0.00 1.40
98 99 6.863126 CCAAACTTGCAAATCTCTTACGAAAT 59.137 34.615 0.00 0.00 0.00 2.17
99 100 6.038825 TCCAAACTTGCAAATCTCTTACGAAA 59.961 34.615 0.00 0.00 0.00 3.46
100 101 5.529430 TCCAAACTTGCAAATCTCTTACGAA 59.471 36.000 0.00 0.00 0.00 3.85
101 102 5.060506 TCCAAACTTGCAAATCTCTTACGA 58.939 37.500 0.00 0.00 0.00 3.43
102 103 5.356882 TCCAAACTTGCAAATCTCTTACG 57.643 39.130 0.00 0.00 0.00 3.18
103 104 7.359514 GCAATTCCAAACTTGCAAATCTCTTAC 60.360 37.037 0.00 0.00 45.50 2.34
104 105 6.646240 GCAATTCCAAACTTGCAAATCTCTTA 59.354 34.615 0.00 0.00 45.50 2.10
105 106 5.467735 GCAATTCCAAACTTGCAAATCTCTT 59.532 36.000 0.00 0.00 45.50 2.85
106 107 4.992951 GCAATTCCAAACTTGCAAATCTCT 59.007 37.500 0.00 0.00 45.50 3.10
107 108 5.273523 GCAATTCCAAACTTGCAAATCTC 57.726 39.130 0.00 0.00 45.50 2.75
114 115 1.796459 CTGCTGCAATTCCAAACTTGC 59.204 47.619 3.02 0.51 46.19 4.01
115 116 3.005050 TCTCTGCTGCAATTCCAAACTTG 59.995 43.478 3.02 0.00 0.00 3.16
116 117 3.225104 TCTCTGCTGCAATTCCAAACTT 58.775 40.909 3.02 0.00 0.00 2.66
117 118 2.818432 CTCTCTGCTGCAATTCCAAACT 59.182 45.455 3.02 0.00 0.00 2.66
118 119 2.816087 TCTCTCTGCTGCAATTCCAAAC 59.184 45.455 3.02 0.00 0.00 2.93
119 120 3.144657 TCTCTCTGCTGCAATTCCAAA 57.855 42.857 3.02 0.00 0.00 3.28
120 121 2.865119 TCTCTCTGCTGCAATTCCAA 57.135 45.000 3.02 0.00 0.00 3.53
121 122 2.865119 TTCTCTCTGCTGCAATTCCA 57.135 45.000 3.02 0.00 0.00 3.53
122 123 5.124457 TGTTTATTCTCTCTGCTGCAATTCC 59.876 40.000 3.02 0.00 0.00 3.01
123 124 6.187125 TGTTTATTCTCTCTGCTGCAATTC 57.813 37.500 3.02 0.00 0.00 2.17
124 125 6.016024 TGTTGTTTATTCTCTCTGCTGCAATT 60.016 34.615 3.02 0.00 0.00 2.32
125 126 5.474532 TGTTGTTTATTCTCTCTGCTGCAAT 59.525 36.000 3.02 0.00 0.00 3.56
126 127 4.821260 TGTTGTTTATTCTCTCTGCTGCAA 59.179 37.500 3.02 0.00 0.00 4.08
127 128 4.388485 TGTTGTTTATTCTCTCTGCTGCA 58.612 39.130 0.88 0.88 0.00 4.41
128 129 5.362556 TTGTTGTTTATTCTCTCTGCTGC 57.637 39.130 0.00 0.00 0.00 5.25
129 130 9.552114 CTTATTTGTTGTTTATTCTCTCTGCTG 57.448 33.333 0.00 0.00 0.00 4.41
130 131 9.289782 ACTTATTTGTTGTTTATTCTCTCTGCT 57.710 29.630 0.00 0.00 0.00 4.24
131 132 9.899226 AACTTATTTGTTGTTTATTCTCTCTGC 57.101 29.630 0.00 0.00 0.00 4.26
153 154 8.200792 CCAAACTCTCTGTGCTATATCTAACTT 58.799 37.037 0.00 0.00 0.00 2.66
154 155 7.561722 TCCAAACTCTCTGTGCTATATCTAACT 59.438 37.037 0.00 0.00 0.00 2.24
155 156 7.717568 TCCAAACTCTCTGTGCTATATCTAAC 58.282 38.462 0.00 0.00 0.00 2.34
156 157 7.898014 TCCAAACTCTCTGTGCTATATCTAA 57.102 36.000 0.00 0.00 0.00 2.10
157 158 7.780271 TCTTCCAAACTCTCTGTGCTATATCTA 59.220 37.037 0.00 0.00 0.00 1.98
158 159 6.609212 TCTTCCAAACTCTCTGTGCTATATCT 59.391 38.462 0.00 0.00 0.00 1.98
159 160 6.810911 TCTTCCAAACTCTCTGTGCTATATC 58.189 40.000 0.00 0.00 0.00 1.63
160 161 6.798427 TCTTCCAAACTCTCTGTGCTATAT 57.202 37.500 0.00 0.00 0.00 0.86
161 162 6.605471 TTCTTCCAAACTCTCTGTGCTATA 57.395 37.500 0.00 0.00 0.00 1.31
162 163 5.489792 TTCTTCCAAACTCTCTGTGCTAT 57.510 39.130 0.00 0.00 0.00 2.97
163 164 4.955811 TTCTTCCAAACTCTCTGTGCTA 57.044 40.909 0.00 0.00 0.00 3.49
164 165 3.845781 TTCTTCCAAACTCTCTGTGCT 57.154 42.857 0.00 0.00 0.00 4.40
165 166 4.791088 GCTTTTCTTCCAAACTCTCTGTGC 60.791 45.833 0.00 0.00 0.00 4.57
166 167 4.553547 CGCTTTTCTTCCAAACTCTCTGTG 60.554 45.833 0.00 0.00 0.00 3.66
167 168 3.561725 CGCTTTTCTTCCAAACTCTCTGT 59.438 43.478 0.00 0.00 0.00 3.41
168 169 3.809832 TCGCTTTTCTTCCAAACTCTCTG 59.190 43.478 0.00 0.00 0.00 3.35
169 170 4.073293 TCGCTTTTCTTCCAAACTCTCT 57.927 40.909 0.00 0.00 0.00 3.10
170 171 4.142795 GGATCGCTTTTCTTCCAAACTCTC 60.143 45.833 0.00 0.00 0.00 3.20
171 172 3.753797 GGATCGCTTTTCTTCCAAACTCT 59.246 43.478 0.00 0.00 0.00 3.24
172 173 3.502211 TGGATCGCTTTTCTTCCAAACTC 59.498 43.478 0.00 0.00 35.38 3.01
173 174 3.486383 TGGATCGCTTTTCTTCCAAACT 58.514 40.909 0.00 0.00 35.38 2.66
174 175 3.915437 TGGATCGCTTTTCTTCCAAAC 57.085 42.857 0.00 0.00 35.38 2.93
175 176 4.522405 TCAATGGATCGCTTTTCTTCCAAA 59.478 37.500 0.00 0.00 41.36 3.28
176 177 4.078537 TCAATGGATCGCTTTTCTTCCAA 58.921 39.130 0.00 0.00 41.36 3.53
177 178 3.684908 TCAATGGATCGCTTTTCTTCCA 58.315 40.909 0.00 0.00 42.18 3.53
178 179 4.439289 CCTTCAATGGATCGCTTTTCTTCC 60.439 45.833 0.00 0.00 0.00 3.46
179 180 4.396166 TCCTTCAATGGATCGCTTTTCTTC 59.604 41.667 0.00 0.00 0.00 2.87
180 181 4.335416 TCCTTCAATGGATCGCTTTTCTT 58.665 39.130 0.00 0.00 0.00 2.52
181 182 3.955471 TCCTTCAATGGATCGCTTTTCT 58.045 40.909 0.00 0.00 0.00 2.52
182 183 4.907879 ATCCTTCAATGGATCGCTTTTC 57.092 40.909 0.00 0.00 42.77 2.29
183 184 6.773976 TTAATCCTTCAATGGATCGCTTTT 57.226 33.333 0.00 0.00 45.35 2.27
184 185 6.966534 ATTAATCCTTCAATGGATCGCTTT 57.033 33.333 0.00 0.00 45.35 3.51
185 186 6.966534 AATTAATCCTTCAATGGATCGCTT 57.033 33.333 0.00 0.00 45.35 4.68
186 187 8.463930 TTTAATTAATCCTTCAATGGATCGCT 57.536 30.769 0.00 0.00 45.35 4.93
187 188 8.567948 TCTTTAATTAATCCTTCAATGGATCGC 58.432 33.333 0.00 0.00 45.35 4.58
210 211 9.112725 GCCCAAGCAATTAATTAATTCATTCTT 57.887 29.630 18.50 15.28 39.53 2.52
211 212 7.716560 GGCCCAAGCAATTAATTAATTCATTCT 59.283 33.333 18.50 11.29 42.56 2.40
212 213 7.716560 AGGCCCAAGCAATTAATTAATTCATTC 59.283 33.333 18.50 9.60 42.56 2.67
213 214 7.576403 AGGCCCAAGCAATTAATTAATTCATT 58.424 30.769 18.50 13.54 42.56 2.57
214 215 7.140522 AGGCCCAAGCAATTAATTAATTCAT 57.859 32.000 18.50 8.96 42.56 2.57
215 216 6.558488 AGGCCCAAGCAATTAATTAATTCA 57.442 33.333 18.50 0.00 42.56 2.57
216 217 7.496747 TGTAGGCCCAAGCAATTAATTAATTC 58.503 34.615 18.50 13.67 42.56 2.17
217 218 7.430760 TGTAGGCCCAAGCAATTAATTAATT 57.569 32.000 16.15 16.15 42.56 1.40
218 219 7.430760 TTGTAGGCCCAAGCAATTAATTAAT 57.569 32.000 4.81 4.81 42.56 1.40
219 220 6.859112 TTGTAGGCCCAAGCAATTAATTAA 57.141 33.333 0.00 0.00 42.56 1.40
220 221 6.211584 TGTTTGTAGGCCCAAGCAATTAATTA 59.788 34.615 8.46 0.00 42.56 1.40
221 222 5.012561 TGTTTGTAGGCCCAAGCAATTAATT 59.987 36.000 8.46 0.00 42.56 1.40
222 223 4.530161 TGTTTGTAGGCCCAAGCAATTAAT 59.470 37.500 8.46 0.00 42.56 1.40
223 224 3.898123 TGTTTGTAGGCCCAAGCAATTAA 59.102 39.130 8.46 0.00 42.56 1.40
224 225 3.501349 TGTTTGTAGGCCCAAGCAATTA 58.499 40.909 8.46 0.00 42.56 1.40
225 226 2.324541 TGTTTGTAGGCCCAAGCAATT 58.675 42.857 8.46 0.00 42.56 2.32
226 227 2.008242 TGTTTGTAGGCCCAAGCAAT 57.992 45.000 8.46 0.00 42.56 3.56
227 228 2.008242 ATGTTTGTAGGCCCAAGCAA 57.992 45.000 13.61 5.31 38.71 3.91
228 229 2.442413 GTATGTTTGTAGGCCCAAGCA 58.558 47.619 12.35 12.35 42.56 3.91
229 230 1.400494 CGTATGTTTGTAGGCCCAAGC 59.600 52.381 0.00 0.00 38.76 4.01
230 231 2.418628 CACGTATGTTTGTAGGCCCAAG 59.581 50.000 0.00 0.00 0.00 3.61
231 232 2.428491 CACGTATGTTTGTAGGCCCAA 58.572 47.619 0.00 0.00 0.00 4.12
232 233 1.339247 CCACGTATGTTTGTAGGCCCA 60.339 52.381 0.00 0.00 0.00 5.36
233 234 1.375551 CCACGTATGTTTGTAGGCCC 58.624 55.000 0.00 0.00 0.00 5.80
234 235 0.730840 GCCACGTATGTTTGTAGGCC 59.269 55.000 0.00 0.00 34.71 5.19
235 236 1.444836 TGCCACGTATGTTTGTAGGC 58.555 50.000 6.46 6.46 40.93 3.93
236 237 3.006940 ACATGCCACGTATGTTTGTAGG 58.993 45.455 0.00 0.00 35.48 3.18
237 238 3.727673 GCACATGCCACGTATGTTTGTAG 60.728 47.826 0.00 0.00 36.79 2.74
238 239 2.160615 GCACATGCCACGTATGTTTGTA 59.839 45.455 0.00 0.00 36.79 2.41
239 240 1.068610 GCACATGCCACGTATGTTTGT 60.069 47.619 0.00 0.00 36.79 2.83
240 241 1.199789 AGCACATGCCACGTATGTTTG 59.800 47.619 0.00 0.00 43.38 2.93
241 242 1.468520 GAGCACATGCCACGTATGTTT 59.531 47.619 0.00 0.00 43.38 2.83
242 243 1.086696 GAGCACATGCCACGTATGTT 58.913 50.000 0.00 0.00 43.38 2.71
243 244 0.036483 TGAGCACATGCCACGTATGT 60.036 50.000 0.00 0.00 43.38 2.29
244 245 1.302366 ATGAGCACATGCCACGTATG 58.698 50.000 0.00 0.00 43.38 2.39
245 246 1.672363 CAATGAGCACATGCCACGTAT 59.328 47.619 0.00 0.00 43.38 3.06
246 247 1.085893 CAATGAGCACATGCCACGTA 58.914 50.000 0.00 0.00 43.38 3.57
247 248 1.588824 CCAATGAGCACATGCCACGT 61.589 55.000 0.00 0.00 43.38 4.49
248 249 1.138036 CCAATGAGCACATGCCACG 59.862 57.895 0.00 0.00 43.38 4.94
249 250 1.514087 CCCAATGAGCACATGCCAC 59.486 57.895 0.00 0.00 43.38 5.01
250 251 2.352821 GCCCAATGAGCACATGCCA 61.353 57.895 0.00 0.00 43.38 4.92
251 252 2.497770 GCCCAATGAGCACATGCC 59.502 61.111 0.00 0.00 43.38 4.40
252 253 2.056223 AGGCCCAATGAGCACATGC 61.056 57.895 0.00 0.00 42.49 4.06
253 254 1.813859 CAGGCCCAATGAGCACATG 59.186 57.895 0.00 0.00 36.79 3.21
254 255 2.056223 GCAGGCCCAATGAGCACAT 61.056 57.895 0.00 0.00 38.50 3.21
255 256 2.677524 GCAGGCCCAATGAGCACA 60.678 61.111 0.00 0.00 0.00 4.57
256 257 2.677524 TGCAGGCCCAATGAGCAC 60.678 61.111 0.00 0.00 0.00 4.40
257 258 2.677524 GTGCAGGCCCAATGAGCA 60.678 61.111 0.00 0.00 0.00 4.26
258 259 3.455469 GGTGCAGGCCCAATGAGC 61.455 66.667 0.00 0.00 0.00 4.26
259 260 0.106569 TATGGTGCAGGCCCAATGAG 60.107 55.000 0.00 0.00 35.14 2.90
260 261 0.334335 TTATGGTGCAGGCCCAATGA 59.666 50.000 0.00 0.00 35.14 2.57
261 262 1.416243 ATTATGGTGCAGGCCCAATG 58.584 50.000 0.00 0.00 35.14 2.82
262 263 2.491455 CCTATTATGGTGCAGGCCCAAT 60.491 50.000 0.00 0.00 35.14 3.16
263 264 1.133513 CCTATTATGGTGCAGGCCCAA 60.134 52.381 0.00 0.00 35.14 4.12
264 265 0.478072 CCTATTATGGTGCAGGCCCA 59.522 55.000 0.00 0.00 36.16 5.36
265 266 0.478507 ACCTATTATGGTGCAGGCCC 59.521 55.000 0.00 0.00 39.17 5.80
273 274 1.140252 GGTCACCGCACCTATTATGGT 59.860 52.381 0.00 0.00 41.77 3.55
274 275 1.542547 GGGTCACCGCACCTATTATGG 60.543 57.143 0.00 0.00 36.57 2.74
275 276 1.542547 GGGGTCACCGCACCTATTATG 60.543 57.143 5.89 0.00 36.57 1.90
276 277 0.763035 GGGGTCACCGCACCTATTAT 59.237 55.000 5.89 0.00 36.57 1.28
277 278 0.325860 AGGGGTCACCGCACCTATTA 60.326 55.000 14.41 0.00 46.96 0.98
278 279 1.615424 AGGGGTCACCGCACCTATT 60.615 57.895 14.41 0.00 46.96 1.73
279 280 2.040606 AGGGGTCACCGCACCTAT 59.959 61.111 14.41 0.00 46.96 2.57
280 281 3.000819 CAGGGGTCACCGCACCTA 61.001 66.667 14.41 0.00 46.96 3.08
288 289 2.348998 CTCAGGTGCAGGGGTCAC 59.651 66.667 0.00 0.00 0.00 3.67
289 290 3.640407 GCTCAGGTGCAGGGGTCA 61.640 66.667 0.00 0.00 0.00 4.02
290 291 4.416738 GGCTCAGGTGCAGGGGTC 62.417 72.222 0.00 0.00 34.04 4.46
293 294 3.970410 TTGGGCTCAGGTGCAGGG 61.970 66.667 0.00 0.00 34.04 4.45
294 295 2.674380 GTTGGGCTCAGGTGCAGG 60.674 66.667 0.00 0.00 34.04 4.85
295 296 2.674380 GGTTGGGCTCAGGTGCAG 60.674 66.667 0.00 0.00 34.04 4.41
296 297 4.284550 GGGTTGGGCTCAGGTGCA 62.285 66.667 0.00 0.00 34.04 4.57
298 299 3.636231 TCGGGTTGGGCTCAGGTG 61.636 66.667 0.00 0.00 0.00 4.00
299 300 3.637273 GTCGGGTTGGGCTCAGGT 61.637 66.667 0.00 0.00 0.00 4.00
300 301 2.895424 AAGTCGGGTTGGGCTCAGG 61.895 63.158 0.00 0.00 0.00 3.86
301 302 1.672356 CAAGTCGGGTTGGGCTCAG 60.672 63.158 0.00 0.00 0.00 3.35
302 303 2.429930 CAAGTCGGGTTGGGCTCA 59.570 61.111 0.00 0.00 0.00 4.26
303 304 2.359975 CCAAGTCGGGTTGGGCTC 60.360 66.667 8.42 0.00 43.02 4.70
304 305 2.852075 TCCAAGTCGGGTTGGGCT 60.852 61.111 14.46 0.00 46.24 5.19
305 306 2.359975 CTCCAAGTCGGGTTGGGC 60.360 66.667 14.46 0.00 46.24 5.36
306 307 2.351276 CCTCCAAGTCGGGTTGGG 59.649 66.667 14.46 7.26 46.24 4.12
308 309 2.351276 CCCCTCCAAGTCGGGTTG 59.649 66.667 0.00 0.00 38.88 3.77
309 310 3.647771 GCCCCTCCAAGTCGGGTT 61.648 66.667 0.00 0.00 39.22 4.11
310 311 4.658786 AGCCCCTCCAAGTCGGGT 62.659 66.667 0.00 0.00 39.22 5.28
311 312 3.330720 AAGCCCCTCCAAGTCGGG 61.331 66.667 0.00 0.00 40.29 5.14
312 313 1.842381 AAGAAGCCCCTCCAAGTCGG 61.842 60.000 0.00 0.00 0.00 4.79
313 314 0.902531 TAAGAAGCCCCTCCAAGTCG 59.097 55.000 0.00 0.00 0.00 4.18
314 315 2.158740 GGATAAGAAGCCCCTCCAAGTC 60.159 54.545 0.00 0.00 0.00 3.01
315 316 1.847088 GGATAAGAAGCCCCTCCAAGT 59.153 52.381 0.00 0.00 0.00 3.16
316 317 1.143889 GGGATAAGAAGCCCCTCCAAG 59.856 57.143 0.00 0.00 46.50 3.61
317 318 1.222567 GGGATAAGAAGCCCCTCCAA 58.777 55.000 0.00 0.00 46.50 3.53
318 319 2.945718 GGGATAAGAAGCCCCTCCA 58.054 57.895 0.00 0.00 46.50 3.86
324 325 4.445557 AAAGAGGATGGGATAAGAAGCC 57.554 45.455 0.00 0.00 0.00 4.35
344 345 9.814507 CAAAGTGCACGTACTATGTATTAAAAA 57.185 29.630 12.01 0.00 0.00 1.94
345 346 8.991026 ACAAAGTGCACGTACTATGTATTAAAA 58.009 29.630 12.01 0.00 0.00 1.52
346 347 8.436970 CACAAAGTGCACGTACTATGTATTAAA 58.563 33.333 12.01 0.00 0.00 1.52
347 348 7.955502 CACAAAGTGCACGTACTATGTATTAA 58.044 34.615 12.01 0.00 0.00 1.40
348 349 7.514573 CACAAAGTGCACGTACTATGTATTA 57.485 36.000 12.01 0.00 0.00 0.98
349 350 6.403333 CACAAAGTGCACGTACTATGTATT 57.597 37.500 12.01 0.00 0.00 1.89
364 365 4.383774 TTTCTCGAATACGCACAAAGTG 57.616 40.909 0.00 0.00 39.58 3.16
365 366 5.412526 TTTTTCTCGAATACGCACAAAGT 57.587 34.783 0.00 0.00 39.58 2.66
481 482 9.656323 TGTATGATGTACTCCCTCTTATAAACT 57.344 33.333 0.00 0.00 0.00 2.66
484 485 9.601810 ACATGTATGATGTACTCCCTCTTATAA 57.398 33.333 0.00 0.00 0.00 0.98
486 487 9.026121 GTACATGTATGATGTACTCCCTCTTAT 57.974 37.037 9.18 0.00 46.45 1.73
487 488 8.405418 GTACATGTATGATGTACTCCCTCTTA 57.595 38.462 9.18 0.00 46.45 2.10
488 489 7.291411 GTACATGTATGATGTACTCCCTCTT 57.709 40.000 9.18 0.00 46.45 2.85
489 490 6.902771 GTACATGTATGATGTACTCCCTCT 57.097 41.667 9.18 0.00 46.45 3.69
497 498 8.528044 TGTAGGTTCTGTACATGTATGATGTA 57.472 34.615 9.18 0.00 33.76 2.29
498 499 7.418337 TGTAGGTTCTGTACATGTATGATGT 57.582 36.000 9.18 0.00 36.13 3.06
508 509 5.352016 GTGTTGTTGTTGTAGGTTCTGTACA 59.648 40.000 0.00 0.00 0.00 2.90
528 529 2.567169 TCATCCATCAACTCCTCGTGTT 59.433 45.455 0.00 0.00 0.00 3.32
556 557 3.885976 TCGTGATTCCTCTCTATCCCT 57.114 47.619 0.00 0.00 0.00 4.20
574 575 5.347093 CCGAATGTTATCCTCATCAGATTCG 59.653 44.000 0.00 0.00 0.00 3.34
578 579 4.262207 GCTCCGAATGTTATCCTCATCAGA 60.262 45.833 0.00 0.00 0.00 3.27
688 690 3.059733 TGACAAAAATACACGTACGCACC 60.060 43.478 16.72 0.00 0.00 5.01
721 723 3.129113 GCAGTGCACCATGATAATGAACA 59.871 43.478 14.63 0.00 0.00 3.18
724 726 3.286329 AGCAGTGCACCATGATAATGA 57.714 42.857 19.20 0.00 0.00 2.57
725 727 4.132336 ACTAGCAGTGCACCATGATAATG 58.868 43.478 19.20 3.46 0.00 1.90
776 778 1.165270 CCCAACGAAACCTAAGCTGG 58.835 55.000 0.00 0.00 0.00 4.85
841 849 2.564947 GGTGTCACTGACTGGAGATTCT 59.435 50.000 10.54 0.00 33.15 2.40
850 858 0.188587 TCTGGGAGGTGTCACTGACT 59.811 55.000 10.54 0.00 29.55 3.41
873 881 0.875059 AAACGTAGCTCTGCCAAAGC 59.125 50.000 0.00 0.00 40.14 3.51
879 887 0.438830 CCAACGAAACGTAGCTCTGC 59.561 55.000 0.00 0.00 39.99 4.26
972 1037 0.391661 TGCTGGAATGACGAAGAGGC 60.392 55.000 0.00 0.00 0.00 4.70
1102 1186 2.125310 TACGCCATCGCCACCTTG 60.125 61.111 0.00 0.00 39.84 3.61
1158 1242 1.664649 GCGTGTGCTGTAGTGCTCA 60.665 57.895 0.00 0.00 38.39 4.26
1197 1284 2.622011 GCGGTGGCGTCAATGGAAA 61.622 57.895 0.00 0.00 0.00 3.13
1237 1324 1.025041 CCCTCTCGTCGACATCATCA 58.975 55.000 17.16 0.00 0.00 3.07
1239 1326 1.736586 GCCCTCTCGTCGACATCAT 59.263 57.895 17.16 0.00 0.00 2.45
1259 1346 1.138036 CGGACAGTATGAACGCCGA 59.862 57.895 0.00 0.00 41.11 5.54
1337 1424 4.436998 GCCTGGACCGACCTGACG 62.437 72.222 0.00 0.00 39.52 4.35
1532 1655 2.418628 CGTATTCACATCCCAGCGTTTT 59.581 45.455 0.00 0.00 0.00 2.43
1533 1656 2.006888 CGTATTCACATCCCAGCGTTT 58.993 47.619 0.00 0.00 0.00 3.60
1534 1657 1.206132 TCGTATTCACATCCCAGCGTT 59.794 47.619 0.00 0.00 0.00 4.84
1535 1658 0.821517 TCGTATTCACATCCCAGCGT 59.178 50.000 0.00 0.00 0.00 5.07
1570 1699 2.165437 ACAATGAACGGCACACAAACTT 59.835 40.909 0.00 0.00 0.00 2.66
1590 1726 1.040339 TGAACTGTGGGGCCAACAAC 61.040 55.000 16.10 10.04 0.00 3.32
1657 1799 0.804989 GGCACATGGAAAGGAGTTCG 59.195 55.000 0.00 0.00 37.08 3.95
1800 1955 8.011844 AGTGGGAAATCTATTAAAAATCTGGC 57.988 34.615 0.00 0.00 0.00 4.85
1859 2015 9.912634 CAACAATTACATTTTAGATGACTTGGT 57.087 29.630 0.00 0.00 0.00 3.67
1941 2097 9.719355 TTAGTTTAATCTCTGCTATTGTTGTCA 57.281 29.630 0.00 0.00 0.00 3.58
2014 2170 9.698309 ATCGTGGTAGAATTCATATTTCTAGTG 57.302 33.333 8.44 0.00 36.59 2.74
2023 2179 6.038936 TGTTCGAGATCGTGGTAGAATTCATA 59.961 38.462 8.44 0.00 40.80 2.15
2137 2293 0.974383 ACGACGACTTCTTCCCCAAT 59.026 50.000 0.00 0.00 0.00 3.16
2139 2295 0.316204 GAACGACGACTTCTTCCCCA 59.684 55.000 0.00 0.00 0.00 4.96
2222 2378 1.103803 GCCTCTCGTGATCCTGTACA 58.896 55.000 0.00 0.00 0.00 2.90
2250 2408 3.672295 GAAGGGACAGCAGGCCTCG 62.672 68.421 0.00 0.00 0.00 4.63
2556 2717 3.140814 GGTTGCGGGATTGAGCCC 61.141 66.667 0.00 0.00 45.10 5.19
2588 2749 4.845580 CCTCGCTCGCCTTGCCAT 62.846 66.667 0.00 0.00 0.00 4.40
2593 2754 3.144193 CTCCTCCTCGCTCGCCTT 61.144 66.667 0.00 0.00 0.00 4.35
2647 2828 1.470112 GGTGAGCTCTTCTACCGCTTC 60.470 57.143 16.19 0.00 33.47 3.86
2651 2832 5.769484 TTATAAGGTGAGCTCTTCTACCG 57.231 43.478 16.19 0.00 38.24 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.