Multiple sequence alignment - TraesCS3A01G432500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G432500 chr3A 100.000 3351 0 0 2259 5609 673900251 673903601 0.000000e+00 6189.0
1 TraesCS3A01G432500 chr3A 100.000 1994 0 0 1 1994 673897993 673899986 0.000000e+00 3683.0
2 TraesCS3A01G432500 chr3D 92.636 2200 106 28 3270 5442 538403038 538405208 0.000000e+00 3114.0
3 TraesCS3A01G432500 chr3D 87.111 2025 120 61 42 1994 538400119 538402074 0.000000e+00 2163.0
4 TraesCS3A01G432500 chr3D 89.407 793 70 8 2259 3038 538402128 538402919 0.000000e+00 987.0
5 TraesCS3A01G432500 chr3D 91.892 111 7 2 3077 3186 538402927 538403036 2.710000e-33 154.0
6 TraesCS3A01G432500 chr3D 92.105 38 1 2 3056 3092 55092804 55092768 1.000000e-02 52.8
7 TraesCS3A01G432500 chr3B 93.902 1640 67 13 3270 4898 713323218 713324835 0.000000e+00 2444.0
8 TraesCS3A01G432500 chr3B 86.859 1560 93 59 52 1584 713320356 713321830 0.000000e+00 1642.0
9 TraesCS3A01G432500 chr3B 92.846 643 33 6 2259 2891 713322349 713322988 0.000000e+00 920.0
10 TraesCS3A01G432500 chr3B 87.204 422 26 12 1582 1994 713321893 713322295 6.620000e-124 455.0
11 TraesCS3A01G432500 chr3B 85.976 164 21 1 5052 5215 713325117 713325278 2.080000e-39 174.0
12 TraesCS3A01G432500 chr3B 96.842 95 3 0 4931 5025 713324833 713324927 5.820000e-35 159.0
13 TraesCS3A01G432500 chr5B 94.144 1110 54 7 3848 4950 678578992 678577887 0.000000e+00 1679.0
14 TraesCS3A01G432500 chr5B 86.000 100 12 2 1292 1390 450107934 450107836 7.690000e-19 106.0
15 TraesCS3A01G432500 chr5B 87.952 83 9 1 2959 3040 611537743 611537661 4.630000e-16 97.1
16 TraesCS3A01G432500 chr4B 92.218 861 58 2 3848 4699 405287889 405287029 0.000000e+00 1210.0
17 TraesCS3A01G432500 chr4B 92.636 258 16 2 4694 4950 405279612 405279357 8.880000e-98 368.0
18 TraesCS3A01G432500 chr4B 86.420 81 8 3 5451 5529 493539807 493539728 1.000000e-12 86.1
19 TraesCS3A01G432500 chr4D 83.444 151 21 4 1241 1389 490151878 490151730 2.730000e-28 137.0
20 TraesCS3A01G432500 chr4D 83.696 92 15 0 2947 3038 459425892 459425983 2.780000e-13 87.9
21 TraesCS3A01G432500 chr7A 83.824 136 18 3 1255 1388 685230130 685229997 5.900000e-25 126.0
22 TraesCS3A01G432500 chr7A 82.353 102 17 1 1292 1393 225635848 225635748 2.780000e-13 87.9
23 TraesCS3A01G432500 chr2D 90.426 94 7 2 3178 3270 619321002 619321094 7.630000e-24 122.0
24 TraesCS3A01G432500 chr2D 90.217 92 8 1 3181 3271 627260971 627260880 9.870000e-23 119.0
25 TraesCS3A01G432500 chr2D 88.000 100 9 3 3181 3279 436111335 436111432 1.280000e-21 115.0
26 TraesCS3A01G432500 chr2D 100.000 32 0 0 3056 3087 463870124 463870155 6.070000e-05 60.2
27 TraesCS3A01G432500 chr2D 100.000 29 0 0 3056 3084 436111402 436111430 3.000000e-03 54.7
28 TraesCS3A01G432500 chr7D 90.323 93 7 2 3186 3277 519264630 519264539 2.740000e-23 121.0
29 TraesCS3A01G432500 chr7D 88.660 97 10 1 3182 3277 5068174 5068078 3.550000e-22 117.0
30 TraesCS3A01G432500 chr7D 81.553 103 16 3 1292 1393 213790665 213790565 1.300000e-11 82.4
31 TraesCS3A01G432500 chr7D 82.716 81 14 0 5460 5540 229801563 229801643 7.790000e-09 73.1
32 TraesCS3A01G432500 chr5D 91.111 90 6 2 3183 3270 62715246 62715157 2.740000e-23 121.0
33 TraesCS3A01G432500 chr5D 83.051 118 17 3 1292 1407 376939768 376939652 2.760000e-18 104.0
34 TraesCS3A01G432500 chr5D 82.474 97 11 5 5417 5510 355463992 355464085 4.660000e-11 80.5
35 TraesCS3A01G432500 chr5D 100.000 28 0 0 3058 3085 531874432 531874459 1.000000e-02 52.8
36 TraesCS3A01G432500 chr4A 88.776 98 9 2 3186 3282 440964823 440964919 9.870000e-23 119.0
37 TraesCS3A01G432500 chr4A 100.000 29 0 0 3056 3084 6936574 6936546 3.000000e-03 54.7
38 TraesCS3A01G432500 chr1D 88.660 97 10 1 3177 3272 30241478 30241574 3.550000e-22 117.0
39 TraesCS3A01G432500 chr1D 81.890 127 19 4 5418 5542 330094196 330094320 2.760000e-18 104.0
40 TraesCS3A01G432500 chr1D 86.486 74 9 1 2965 3038 199867560 199867488 4.660000e-11 80.5
41 TraesCS3A01G432500 chr1D 100.000 28 0 0 3058 3085 341552922 341552949 1.000000e-02 52.8
42 TraesCS3A01G432500 chr2B 87.255 102 9 4 3182 3282 387076275 387076177 4.590000e-21 113.0
43 TraesCS3A01G432500 chr2B 100.000 32 0 0 3056 3087 545261434 545261465 6.070000e-05 60.2
44 TraesCS3A01G432500 chr2B 88.636 44 3 2 2997 3040 694997063 694997022 1.000000e-02 52.8
45 TraesCS3A01G432500 chr5A 84.071 113 15 3 1292 1402 477587084 477586973 7.690000e-19 106.0
46 TraesCS3A01G432500 chr1B 88.889 81 9 0 5468 5548 668082504 668082424 3.580000e-17 100.0
47 TraesCS3A01G432500 chr1B 80.451 133 22 4 5418 5548 444943260 444943390 1.290000e-16 99.0
48 TraesCS3A01G432500 chr1B 86.486 74 9 1 2965 3038 286709107 286709035 4.660000e-11 80.5
49 TraesCS3A01G432500 chr1B 100.000 29 0 0 3058 3086 51962255 51962227 3.000000e-03 54.7
50 TraesCS3A01G432500 chr7B 86.364 88 11 1 5441 5527 622276814 622276901 1.660000e-15 95.3
51 TraesCS3A01G432500 chr7B 97.561 41 1 0 3 43 251048019 251048059 2.800000e-08 71.3
52 TraesCS3A01G432500 chr6A 91.667 60 5 0 5468 5527 507093320 507093261 3.600000e-12 84.2
53 TraesCS3A01G432500 chr2A 80.000 120 19 4 5419 5537 31921132 31921017 3.600000e-12 84.2
54 TraesCS3A01G432500 chr2A 100.000 32 0 0 3058 3089 758534695 758534726 6.070000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G432500 chr3A 673897993 673903601 5608 False 4936.000000 6189 100.000000 1 5609 2 chr3A.!!$F1 5608
1 TraesCS3A01G432500 chr3D 538400119 538405208 5089 False 1604.500000 3114 90.261500 42 5442 4 chr3D.!!$F1 5400
2 TraesCS3A01G432500 chr3B 713320356 713325278 4922 False 965.666667 2444 90.604833 52 5215 6 chr3B.!!$F1 5163
3 TraesCS3A01G432500 chr5B 678577887 678578992 1105 True 1679.000000 1679 94.144000 3848 4950 1 chr5B.!!$R3 1102
4 TraesCS3A01G432500 chr4B 405287029 405287889 860 True 1210.000000 1210 92.218000 3848 4699 1 chr4B.!!$R2 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 677 0.047176 TCCTCTCCTCTCCTCTCCCT 59.953 60.0 0.0 0.0 0.0 4.20 F
627 678 0.185901 CCTCTCCTCTCCTCTCCCTG 59.814 65.0 0.0 0.0 0.0 4.45 F
628 679 0.185901 CTCTCCTCTCCTCTCCCTGG 59.814 65.0 0.0 0.0 0.0 4.45 F
911 975 0.315382 CGCCATTTCTTGATCGTCGC 60.315 55.0 0.0 0.0 0.0 5.19 F
2465 2645 0.539051 AGGATCTCAAAGGTCAGCCG 59.461 55.0 0.0 0.0 40.5 5.52 F
3585 3787 0.107703 TTTCTGCCCTGATACAGCCG 60.108 55.0 0.0 0.0 33.8 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1536 0.319900 GATCACGGATGGATGTCGGG 60.320 60.0 0.00 0.0 0.00 5.14 R
1445 1538 0.389025 TGGATCACGGATGGATGTCG 59.611 55.0 0.00 0.0 0.00 4.35 R
1485 1578 0.804364 TAAAGATGTTGCTGCTGCCG 59.196 50.0 13.47 0.0 38.71 5.69 R
2910 3096 0.034337 TCCACGTGGTGTAAGAAGGC 59.966 55.0 32.74 0.0 36.34 4.35 R
3866 4078 1.116308 TGTCACTCCTGTTCACGGAA 58.884 50.0 0.00 0.0 0.00 4.30 R
4867 5098 0.035056 CCCCCTGTACTTTCTGCTGG 60.035 60.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.586843 ACACTTTGGCTTGGTCACA 57.413 47.368 0.00 0.00 0.00 3.58
19 20 1.102978 ACACTTTGGCTTGGTCACAC 58.897 50.000 0.00 0.00 0.00 3.82
20 21 1.340991 ACACTTTGGCTTGGTCACACT 60.341 47.619 0.00 0.00 0.00 3.55
21 22 2.092646 ACACTTTGGCTTGGTCACACTA 60.093 45.455 0.00 0.00 0.00 2.74
22 23 2.948979 CACTTTGGCTTGGTCACACTAA 59.051 45.455 0.00 0.00 0.00 2.24
23 24 3.569701 CACTTTGGCTTGGTCACACTAAT 59.430 43.478 0.00 0.00 0.00 1.73
24 25 3.821033 ACTTTGGCTTGGTCACACTAATC 59.179 43.478 0.00 0.00 0.00 1.75
25 26 3.788227 TTGGCTTGGTCACACTAATCT 57.212 42.857 0.00 0.00 0.00 2.40
26 27 3.334583 TGGCTTGGTCACACTAATCTC 57.665 47.619 0.00 0.00 0.00 2.75
27 28 2.027192 TGGCTTGGTCACACTAATCTCC 60.027 50.000 0.00 0.00 0.00 3.71
28 29 2.027192 GGCTTGGTCACACTAATCTCCA 60.027 50.000 0.00 0.00 0.00 3.86
29 30 3.559171 GGCTTGGTCACACTAATCTCCAA 60.559 47.826 0.00 0.00 34.47 3.53
30 31 3.437049 GCTTGGTCACACTAATCTCCAAC 59.563 47.826 0.00 0.00 32.61 3.77
31 32 3.695830 TGGTCACACTAATCTCCAACC 57.304 47.619 0.00 0.00 0.00 3.77
32 33 2.976185 TGGTCACACTAATCTCCAACCA 59.024 45.455 0.00 0.00 33.35 3.67
33 34 3.392947 TGGTCACACTAATCTCCAACCAA 59.607 43.478 0.00 0.00 32.86 3.67
34 35 4.141367 TGGTCACACTAATCTCCAACCAAA 60.141 41.667 0.00 0.00 32.86 3.28
35 36 4.215613 GGTCACACTAATCTCCAACCAAAC 59.784 45.833 0.00 0.00 0.00 2.93
36 37 4.819630 GTCACACTAATCTCCAACCAAACA 59.180 41.667 0.00 0.00 0.00 2.83
37 38 5.049405 GTCACACTAATCTCCAACCAAACAG 60.049 44.000 0.00 0.00 0.00 3.16
38 39 5.063204 CACACTAATCTCCAACCAAACAGA 58.937 41.667 0.00 0.00 0.00 3.41
39 40 5.049405 CACACTAATCTCCAACCAAACAGAC 60.049 44.000 0.00 0.00 0.00 3.51
40 41 4.455877 CACTAATCTCCAACCAAACAGACC 59.544 45.833 0.00 0.00 0.00 3.85
44 45 1.142870 CTCCAACCAAACAGACCCTCA 59.857 52.381 0.00 0.00 0.00 3.86
77 78 4.760047 CCCTCGCCACCAACTCCG 62.760 72.222 0.00 0.00 0.00 4.63
128 129 1.302832 CAGCGCTGGTTTCCTTCCT 60.303 57.895 29.88 0.00 0.00 3.36
131 132 1.377333 CGCTGGTTTCCTTCCTCCC 60.377 63.158 0.00 0.00 0.00 4.30
135 136 1.198759 TGGTTTCCTTCCTCCCTCCG 61.199 60.000 0.00 0.00 0.00 4.63
136 137 1.199425 GGTTTCCTTCCTCCCTCCGT 61.199 60.000 0.00 0.00 0.00 4.69
137 138 0.249676 GTTTCCTTCCTCCCTCCGTC 59.750 60.000 0.00 0.00 0.00 4.79
140 141 3.148279 CTTCCTCCCTCCGTCCCG 61.148 72.222 0.00 0.00 0.00 5.14
141 142 3.959329 CTTCCTCCCTCCGTCCCGT 62.959 68.421 0.00 0.00 0.00 5.28
142 143 3.951769 TTCCTCCCTCCGTCCCGTC 62.952 68.421 0.00 0.00 0.00 4.79
157 158 2.756025 CGTCCTCGCTCGCTCTCTT 61.756 63.158 0.00 0.00 0.00 2.85
163 180 0.449786 TCGCTCGCTCTCTTTCTCTG 59.550 55.000 0.00 0.00 0.00 3.35
226 246 2.745821 GGAGTGGTAAAACCTAAAGCGG 59.254 50.000 0.00 0.00 39.58 5.52
232 252 1.583495 AAAACCTAAAGCGGGCGAGC 61.583 55.000 0.00 0.00 37.41 5.03
250 270 1.367471 CGAGTGAACAGTGGAGGCA 59.633 57.895 0.00 0.00 0.00 4.75
253 273 2.031012 TGAACAGTGGAGGCAGCG 59.969 61.111 0.00 0.00 0.00 5.18
389 432 2.876858 ACTGTCCTCCCCCTCCCT 60.877 66.667 0.00 0.00 0.00 4.20
392 435 4.500826 GTCCTCCCCCTCCCTCCC 62.501 77.778 0.00 0.00 0.00 4.30
409 452 2.123077 CCCCTCATCGCCCTCTCT 60.123 66.667 0.00 0.00 0.00 3.10
428 479 1.144936 CTCCGCCCATCTCCAACTC 59.855 63.158 0.00 0.00 0.00 3.01
452 503 4.740822 ATCGGGGTTGGTGCTGCC 62.741 66.667 0.00 0.00 37.90 4.85
470 521 1.827789 CGCTGAGGCTAGCTCTCCT 60.828 63.158 22.63 10.13 41.51 3.69
471 522 1.795170 CGCTGAGGCTAGCTCTCCTC 61.795 65.000 22.63 21.26 46.95 3.71
472 523 0.468029 GCTGAGGCTAGCTCTCCTCT 60.468 60.000 25.59 9.16 46.90 3.69
504 555 3.323403 ACTCTCCACTGTTCTCTTCCTTG 59.677 47.826 0.00 0.00 0.00 3.61
512 563 2.125512 CTCTTCCTTGTCCGCCCG 60.126 66.667 0.00 0.00 0.00 6.13
513 564 4.388499 TCTTCCTTGTCCGCCCGC 62.388 66.667 0.00 0.00 0.00 6.13
587 638 3.367646 AGCAGTAGCACTAGACCAGTA 57.632 47.619 0.00 0.00 45.49 2.74
588 639 3.283751 AGCAGTAGCACTAGACCAGTAG 58.716 50.000 0.00 0.00 45.49 2.57
589 640 2.223618 GCAGTAGCACTAGACCAGTAGC 60.224 54.545 0.00 0.00 41.58 3.58
620 671 1.287739 CACTTCCTCCTCTCCTCTCCT 59.712 57.143 0.00 0.00 0.00 3.69
621 672 1.569072 ACTTCCTCCTCTCCTCTCCTC 59.431 57.143 0.00 0.00 0.00 3.71
622 673 1.852965 CTTCCTCCTCTCCTCTCCTCT 59.147 57.143 0.00 0.00 0.00 3.69
623 674 1.518367 TCCTCCTCTCCTCTCCTCTC 58.482 60.000 0.00 0.00 0.00 3.20
625 676 0.478507 CTCCTCTCCTCTCCTCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
626 677 0.047176 TCCTCTCCTCTCCTCTCCCT 59.953 60.000 0.00 0.00 0.00 4.20
627 678 0.185901 CCTCTCCTCTCCTCTCCCTG 59.814 65.000 0.00 0.00 0.00 4.45
628 679 0.185901 CTCTCCTCTCCTCTCCCTGG 59.814 65.000 0.00 0.00 0.00 4.45
660 711 4.394712 GTGGGTGGTCTGGCTCCG 62.395 72.222 0.00 0.00 0.00 4.63
740 794 3.489180 TCCGTCGATCTCACTTTTCTC 57.511 47.619 0.00 0.00 0.00 2.87
741 795 3.082548 TCCGTCGATCTCACTTTTCTCT 58.917 45.455 0.00 0.00 0.00 3.10
790 844 2.435586 CTCCTCTTGCTGGTGCGG 60.436 66.667 0.00 0.00 43.34 5.69
816 870 3.375647 ACTGTACTCTCTCCCTCTTCC 57.624 52.381 0.00 0.00 0.00 3.46
824 878 3.461831 CTCTCTCCCTCTTCCTCTTCCTA 59.538 52.174 0.00 0.00 0.00 2.94
861 915 2.430367 GGTGGGCGGTTCTTGTCT 59.570 61.111 0.00 0.00 0.00 3.41
872 926 2.775032 TTCTTGTCTGCGTACGGCCC 62.775 60.000 18.39 0.36 42.61 5.80
873 927 3.583276 CTTGTCTGCGTACGGCCCA 62.583 63.158 18.39 5.62 42.61 5.36
876 935 2.992689 TCTGCGTACGGCCCAGAA 60.993 61.111 18.39 3.87 42.61 3.02
893 952 1.893137 AGAAAGCCTTTTTAAGCCCCG 59.107 47.619 0.00 0.00 0.00 5.73
911 975 0.315382 CGCCATTTCTTGATCGTCGC 60.315 55.000 0.00 0.00 0.00 5.19
1039 1107 1.899437 GATGCCTTCGTGGGACCTCA 61.899 60.000 0.00 0.00 39.61 3.86
1395 1484 4.697756 TGCAGCAGGTACACCCGC 62.698 66.667 0.00 0.00 38.74 6.13
1403 1492 1.376812 GGTACACCCGCTCCCTTTG 60.377 63.158 0.00 0.00 0.00 2.77
1443 1536 2.513897 CCTGCCGATTCGTTCCCC 60.514 66.667 5.20 0.00 0.00 4.81
1481 1574 0.736325 CCACGCTCCCTAACTTCGTG 60.736 60.000 6.15 6.15 46.79 4.35
1485 1578 1.077089 GCTCCCTAACTTCGTGCGTC 61.077 60.000 0.00 0.00 0.00 5.19
1548 1641 2.286418 CGAGAGTTGCTGTGGTTTGTTC 60.286 50.000 0.00 0.00 0.00 3.18
1549 1642 1.670811 AGAGTTGCTGTGGTTTGTTCG 59.329 47.619 0.00 0.00 0.00 3.95
1609 1767 3.799420 CAGCTAGCTGGATTAGTTCGTTC 59.201 47.826 33.06 0.00 40.17 3.95
1610 1768 2.789893 GCTAGCTGGATTAGTTCGTTCG 59.210 50.000 7.70 0.00 0.00 3.95
1611 1769 3.734293 GCTAGCTGGATTAGTTCGTTCGT 60.734 47.826 7.70 0.00 0.00 3.85
1612 1770 3.314541 AGCTGGATTAGTTCGTTCGTT 57.685 42.857 0.00 0.00 0.00 3.85
1627 1785 4.084888 GTTCGGCGGGCGAACAAG 62.085 66.667 44.45 14.06 43.43 3.16
1665 1823 1.576421 CAGTTCCCTGTCGCTTTGC 59.424 57.895 0.00 0.00 33.80 3.68
1666 1824 1.600916 AGTTCCCTGTCGCTTTGCC 60.601 57.895 0.00 0.00 0.00 4.52
1707 1865 3.575630 GCTAGCGATTAATCATCCGACA 58.424 45.455 15.57 0.00 0.00 4.35
1719 1877 1.552799 ATCCGACATGCACCTCACCA 61.553 55.000 0.00 0.00 0.00 4.17
1769 1927 4.517832 GTCTCCCACTCACCGTAAAAATTT 59.482 41.667 0.00 0.00 0.00 1.82
1770 1928 4.517453 TCTCCCACTCACCGTAAAAATTTG 59.483 41.667 0.00 0.00 0.00 2.32
1771 1929 4.462133 TCCCACTCACCGTAAAAATTTGA 58.538 39.130 0.00 0.00 0.00 2.69
1774 1941 5.460748 CCCACTCACCGTAAAAATTTGAAAC 59.539 40.000 0.00 0.00 0.00 2.78
1788 1955 7.389803 AAATTTGAAACCCCACTTTGAAAAG 57.610 32.000 1.22 1.22 41.73 2.27
1816 1983 7.012515 ACACAAATCCATGTCAAAAAGTACGTA 59.987 33.333 0.00 0.00 0.00 3.57
1817 1984 8.020819 CACAAATCCATGTCAAAAAGTACGTAT 58.979 33.333 0.00 0.00 0.00 3.06
1818 1985 9.221933 ACAAATCCATGTCAAAAAGTACGTATA 57.778 29.630 0.00 0.00 0.00 1.47
1839 2006 7.226523 CGTATAATCACCATGGAAAACATCTGA 59.773 37.037 21.47 9.44 37.84 3.27
1840 2007 9.071276 GTATAATCACCATGGAAAACATCTGAT 57.929 33.333 21.47 11.52 37.84 2.90
1843 2010 4.945543 TCACCATGGAAAACATCTGATCTG 59.054 41.667 21.47 0.24 37.84 2.90
1844 2011 4.703575 CACCATGGAAAACATCTGATCTGT 59.296 41.667 21.47 0.00 37.84 3.41
1845 2012 5.882000 CACCATGGAAAACATCTGATCTGTA 59.118 40.000 21.47 0.00 37.84 2.74
1846 2013 5.882557 ACCATGGAAAACATCTGATCTGTAC 59.117 40.000 21.47 0.00 37.84 2.90
1847 2014 5.882000 CCATGGAAAACATCTGATCTGTACA 59.118 40.000 5.56 0.00 37.84 2.90
1848 2015 6.544931 CCATGGAAAACATCTGATCTGTACAT 59.455 38.462 5.56 0.00 37.84 2.29
1943 2114 2.125912 CCCGGACTGCGTCTGAAG 60.126 66.667 0.73 6.25 41.05 3.02
2294 2465 1.446792 CGTCGTTCTCATGGCTGCT 60.447 57.895 0.00 0.00 0.00 4.24
2299 2470 1.077930 TTCTCATGGCTGCTGCTCC 60.078 57.895 15.64 2.78 39.59 4.70
2421 2598 3.334583 TCAAACAGAGAATTCCTCCCG 57.665 47.619 0.65 0.00 42.97 5.14
2445 2625 2.690497 TGCTTCTAGAAGACAGGGATCG 59.310 50.000 32.16 6.67 40.79 3.69
2456 2636 2.695666 GACAGGGATCGAGGATCTCAAA 59.304 50.000 8.11 0.00 41.64 2.69
2465 2645 0.539051 AGGATCTCAAAGGTCAGCCG 59.461 55.000 0.00 0.00 40.50 5.52
2493 2673 4.696877 GTGGCCGTGTAATTAGGTTTTAGT 59.303 41.667 0.00 0.00 0.00 2.24
2494 2674 5.874261 GTGGCCGTGTAATTAGGTTTTAGTA 59.126 40.000 0.00 0.00 0.00 1.82
2495 2675 6.036408 GTGGCCGTGTAATTAGGTTTTAGTAG 59.964 42.308 0.00 0.00 0.00 2.57
2496 2676 6.108687 GGCCGTGTAATTAGGTTTTAGTAGT 58.891 40.000 0.00 0.00 0.00 2.73
2540 2725 2.095372 GGGTGTAATTAAGCTCGTGTGC 59.905 50.000 0.00 0.00 0.00 4.57
2568 2753 1.467678 TTGGGAAATTGGGGCGTGTG 61.468 55.000 0.00 0.00 0.00 3.82
2598 2783 1.404986 CCATGTGCTTGATTTGGCCTG 60.405 52.381 3.32 0.00 0.00 4.85
2666 2851 8.455682 TCTTGTTTTTCTACAACTTCGTTGATT 58.544 29.630 13.11 0.00 45.28 2.57
2668 2853 6.470877 TGTTTTTCTACAACTTCGTTGATTGC 59.529 34.615 13.11 0.00 45.28 3.56
2706 2892 9.699985 CAAATTTTCGATCTGTATCTTGAGAAG 57.300 33.333 0.00 0.00 0.00 2.85
2716 2902 9.902684 ATCTGTATCTTGAGAAGTCATTTTGAT 57.097 29.630 0.00 0.00 30.85 2.57
2894 3080 7.883217 GGTACTCCGTCAATCTCTAATATTCA 58.117 38.462 0.00 0.00 0.00 2.57
2921 3108 7.916914 TTTCCTGTTAATAGCCTTCTTACAC 57.083 36.000 0.00 0.00 0.00 2.90
2932 3119 2.546789 CCTTCTTACACCACGTGGAAAC 59.453 50.000 40.21 0.00 35.81 2.78
2933 3120 1.855513 TCTTACACCACGTGGAAACG 58.144 50.000 40.21 25.09 35.81 3.60
2935 3122 2.036217 TCTTACACCACGTGGAAACGAT 59.964 45.455 40.21 14.91 35.81 3.73
2955 3143 1.140852 TGCATGCGGCCTAGAAAGTAT 59.859 47.619 14.09 0.00 43.89 2.12
2962 3150 2.103263 CGGCCTAGAAAGTATTGCCTCT 59.897 50.000 0.00 0.00 36.74 3.69
2980 3168 6.058833 TGCCTCTGTAACAAAATGTAAGACA 58.941 36.000 0.00 0.00 0.00 3.41
2997 3185 9.807649 ATGTAAGACATTTCTTATGCCATTTTC 57.192 29.630 4.69 0.00 44.47 2.29
3044 3232 5.416271 TGGTACAAATGGAGTACTCCTTC 57.584 43.478 35.83 19.92 43.34 3.46
3045 3233 4.224370 TGGTACAAATGGAGTACTCCTTCC 59.776 45.833 35.83 26.26 43.34 3.46
3046 3234 7.078031 TGGTACAAATGGAGTACTCCTTCCG 62.078 48.000 35.83 25.83 43.34 4.30
3050 3238 2.502633 GGAGTACTCCTTCCGTCCC 58.497 63.158 31.12 5.20 46.16 4.46
3051 3239 0.324091 GGAGTACTCCTTCCGTCCCA 60.324 60.000 31.12 0.00 46.16 4.37
3052 3240 1.688627 GGAGTACTCCTTCCGTCCCAT 60.689 57.143 31.12 0.00 46.16 4.00
3053 3241 1.409427 GAGTACTCCTTCCGTCCCATG 59.591 57.143 12.13 0.00 0.00 3.66
3054 3242 1.006758 AGTACTCCTTCCGTCCCATGA 59.993 52.381 0.00 0.00 0.00 3.07
3055 3243 1.829222 GTACTCCTTCCGTCCCATGAA 59.171 52.381 0.00 0.00 0.00 2.57
3056 3244 1.584724 ACTCCTTCCGTCCCATGAAT 58.415 50.000 0.00 0.00 0.00 2.57
3057 3245 2.759355 ACTCCTTCCGTCCCATGAATA 58.241 47.619 0.00 0.00 0.00 1.75
3058 3246 3.318313 ACTCCTTCCGTCCCATGAATAT 58.682 45.455 0.00 0.00 0.00 1.28
3059 3247 3.716872 ACTCCTTCCGTCCCATGAATATT 59.283 43.478 0.00 0.00 0.00 1.28
3060 3248 4.905456 ACTCCTTCCGTCCCATGAATATTA 59.095 41.667 0.00 0.00 0.00 0.98
3061 3249 5.548056 ACTCCTTCCGTCCCATGAATATTAT 59.452 40.000 0.00 0.00 0.00 1.28
3062 3250 5.804639 TCCTTCCGTCCCATGAATATTATG 58.195 41.667 0.00 0.00 0.00 1.90
3063 3251 4.943705 CCTTCCGTCCCATGAATATTATGG 59.056 45.833 13.10 13.10 43.77 2.74
3071 3259 4.517285 CCATGAATATTATGGGACGGAGG 58.483 47.826 12.57 0.00 41.11 4.30
3072 3260 4.517285 CATGAATATTATGGGACGGAGGG 58.483 47.826 0.00 0.00 0.00 4.30
3073 3261 3.864328 TGAATATTATGGGACGGAGGGA 58.136 45.455 0.00 0.00 0.00 4.20
3074 3262 3.838317 TGAATATTATGGGACGGAGGGAG 59.162 47.826 0.00 0.00 0.00 4.30
3075 3263 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3080 3268 0.635009 TGGGACGGAGGGAGTAGATT 59.365 55.000 0.00 0.00 0.00 2.40
3081 3269 1.041437 GGGACGGAGGGAGTAGATTG 58.959 60.000 0.00 0.00 0.00 2.67
3091 3279 6.373216 CGGAGGGAGTAGATTGTAAGATCTAG 59.627 46.154 0.00 0.00 38.84 2.43
3092 3280 6.661805 GGAGGGAGTAGATTGTAAGATCTAGG 59.338 46.154 0.00 0.00 38.84 3.02
3186 3384 7.373617 TCCATCATGTGCTCCTAGTTAATTA 57.626 36.000 0.00 0.00 0.00 1.40
3187 3385 7.217200 TCCATCATGTGCTCCTAGTTAATTAC 58.783 38.462 0.00 0.00 0.00 1.89
3188 3386 7.071196 TCCATCATGTGCTCCTAGTTAATTACT 59.929 37.037 0.00 0.00 41.04 2.24
3189 3387 7.386299 CCATCATGTGCTCCTAGTTAATTACTC 59.614 40.741 0.00 0.00 38.33 2.59
3190 3388 6.817184 TCATGTGCTCCTAGTTAATTACTCC 58.183 40.000 0.00 0.00 38.33 3.85
3191 3389 5.609533 TGTGCTCCTAGTTAATTACTCCC 57.390 43.478 0.00 0.00 38.33 4.30
3192 3390 4.407945 TGTGCTCCTAGTTAATTACTCCCC 59.592 45.833 0.00 0.00 38.33 4.81
3193 3391 3.971971 TGCTCCTAGTTAATTACTCCCCC 59.028 47.826 0.00 0.00 38.33 5.40
3211 3409 4.755266 CCCCCGTCCCATAATATAAGAG 57.245 50.000 0.00 0.00 0.00 2.85
3212 3410 3.118371 CCCCCGTCCCATAATATAAGAGC 60.118 52.174 0.00 0.00 0.00 4.09
3213 3411 3.430374 CCCCGTCCCATAATATAAGAGCG 60.430 52.174 0.00 0.00 0.00 5.03
3214 3412 3.194968 CCCGTCCCATAATATAAGAGCGT 59.805 47.826 0.00 0.00 0.00 5.07
3215 3413 4.322499 CCCGTCCCATAATATAAGAGCGTT 60.322 45.833 0.00 0.00 0.00 4.84
3216 3414 5.235516 CCGTCCCATAATATAAGAGCGTTT 58.764 41.667 0.00 0.00 0.00 3.60
3217 3415 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3218 3416 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3219 3417 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3220 3418 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3221 3419 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3222 3420 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3223 3421 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
3224 3422 7.855904 CCATAATATAAGAGCGTTTTTGACACC 59.144 37.037 0.00 0.00 0.00 4.16
3225 3423 6.811253 AATATAAGAGCGTTTTTGACACCA 57.189 33.333 0.00 0.00 0.00 4.17
3226 3424 2.844122 AAGAGCGTTTTTGACACCAC 57.156 45.000 0.00 0.00 0.00 4.16
3227 3425 1.745232 AGAGCGTTTTTGACACCACA 58.255 45.000 0.00 0.00 0.00 4.17
3228 3426 1.400494 AGAGCGTTTTTGACACCACAC 59.600 47.619 0.00 0.00 0.00 3.82
3229 3427 1.400494 GAGCGTTTTTGACACCACACT 59.600 47.619 0.00 0.00 0.00 3.55
3230 3428 2.610374 GAGCGTTTTTGACACCACACTA 59.390 45.455 0.00 0.00 0.00 2.74
3231 3429 3.211045 AGCGTTTTTGACACCACACTAT 58.789 40.909 0.00 0.00 0.00 2.12
3232 3430 3.630312 AGCGTTTTTGACACCACACTATT 59.370 39.130 0.00 0.00 0.00 1.73
3233 3431 3.728718 GCGTTTTTGACACCACACTATTG 59.271 43.478 0.00 0.00 0.00 1.90
3234 3432 4.286910 CGTTTTTGACACCACACTATTGG 58.713 43.478 0.00 0.00 43.04 3.16
3235 3433 4.048504 GTTTTTGACACCACACTATTGGC 58.951 43.478 0.00 0.00 40.77 4.52
3236 3434 2.647683 TTGACACCACACTATTGGCA 57.352 45.000 0.00 0.00 40.77 4.92
3237 3435 2.647683 TGACACCACACTATTGGCAA 57.352 45.000 0.68 0.68 40.77 4.52
3238 3436 2.937519 TGACACCACACTATTGGCAAA 58.062 42.857 3.01 0.00 40.77 3.68
3239 3437 3.291584 TGACACCACACTATTGGCAAAA 58.708 40.909 3.01 0.00 40.77 2.44
3240 3438 3.701542 TGACACCACACTATTGGCAAAAA 59.298 39.130 3.01 0.00 40.77 1.94
3241 3439 4.343526 TGACACCACACTATTGGCAAAAAT 59.656 37.500 3.01 0.00 40.77 1.82
3242 3440 4.630111 ACACCACACTATTGGCAAAAATG 58.370 39.130 3.01 5.22 40.77 2.32
3243 3441 3.432933 CACCACACTATTGGCAAAAATGC 59.567 43.478 3.01 0.00 40.77 3.56
3244 3442 3.324556 ACCACACTATTGGCAAAAATGCT 59.675 39.130 3.01 0.00 40.77 3.79
3245 3443 4.202346 ACCACACTATTGGCAAAAATGCTT 60.202 37.500 3.01 0.00 40.77 3.91
3246 3444 4.756135 CCACACTATTGGCAAAAATGCTTT 59.244 37.500 3.01 0.00 34.73 3.51
3247 3445 5.239087 CCACACTATTGGCAAAAATGCTTTT 59.761 36.000 3.01 0.00 35.02 2.27
3248 3446 6.426328 CCACACTATTGGCAAAAATGCTTTTA 59.574 34.615 3.01 0.00 32.85 1.52
3249 3447 7.119553 CCACACTATTGGCAAAAATGCTTTTAT 59.880 33.333 3.01 0.00 32.85 1.40
3250 3448 9.149225 CACACTATTGGCAAAAATGCTTTTATA 57.851 29.630 3.01 0.00 32.85 0.98
3251 3449 9.889128 ACACTATTGGCAAAAATGCTTTTATAT 57.111 25.926 3.01 0.00 32.85 0.86
3257 3455 9.896645 TTGGCAAAAATGCTTTTATATTATGGA 57.103 25.926 0.00 0.00 32.85 3.41
3258 3456 9.896645 TGGCAAAAATGCTTTTATATTATGGAA 57.103 25.926 0.00 0.00 32.85 3.53
3260 3458 9.848172 GCAAAAATGCTTTTATATTATGGAACG 57.152 29.630 0.00 0.00 32.85 3.95
3263 3461 9.965824 AAAATGCTTTTATATTATGGAACGGAG 57.034 29.630 0.00 0.00 0.00 4.63
3264 3462 7.687941 ATGCTTTTATATTATGGAACGGAGG 57.312 36.000 0.00 0.00 0.00 4.30
3265 3463 6.833041 TGCTTTTATATTATGGAACGGAGGA 58.167 36.000 0.00 0.00 0.00 3.71
3266 3464 6.934645 TGCTTTTATATTATGGAACGGAGGAG 59.065 38.462 0.00 0.00 0.00 3.69
3267 3465 6.935208 GCTTTTATATTATGGAACGGAGGAGT 59.065 38.462 0.00 0.00 0.00 3.85
3268 3466 8.092687 GCTTTTATATTATGGAACGGAGGAGTA 58.907 37.037 0.00 0.00 0.00 2.59
3346 3544 2.039084 CCCCTTTCAGTTGACTGCTAGT 59.961 50.000 6.27 0.00 43.46 2.57
3385 3583 1.202475 TCACACGTGCTTGCTGAGTAA 60.202 47.619 17.22 0.00 0.00 2.24
3386 3584 1.193203 CACACGTGCTTGCTGAGTAAG 59.807 52.381 17.22 5.90 0.00 2.34
3387 3585 1.202533 ACACGTGCTTGCTGAGTAAGT 60.203 47.619 17.22 0.00 33.41 2.24
3498 3697 1.408702 GTTTTCAGTCTTTGGCTGGCA 59.591 47.619 0.00 0.00 34.89 4.92
3499 3698 1.999648 TTTCAGTCTTTGGCTGGCAT 58.000 45.000 4.22 0.00 34.89 4.40
3500 3699 1.538047 TTCAGTCTTTGGCTGGCATC 58.462 50.000 4.22 0.00 34.89 3.91
3535 3734 1.180029 CTGTGGGATCCAAAGCAAGG 58.820 55.000 15.23 0.00 31.50 3.61
3585 3787 0.107703 TTTCTGCCCTGATACAGCCG 60.108 55.000 0.00 0.00 33.80 5.52
3590 3792 0.396811 GCCCTGATACAGCCGGTATT 59.603 55.000 1.90 0.00 42.76 1.89
3620 3822 4.558226 AGCCAGTTAATGATGTCACAGA 57.442 40.909 0.00 0.00 0.00 3.41
3651 3853 5.188434 ACACCTATGACATGATGAAACCAG 58.812 41.667 0.00 0.00 0.00 4.00
3652 3854 5.045651 ACACCTATGACATGATGAAACCAGA 60.046 40.000 0.00 0.00 0.00 3.86
3653 3855 5.295292 CACCTATGACATGATGAAACCAGAC 59.705 44.000 0.00 0.00 0.00 3.51
3654 3856 4.818546 CCTATGACATGATGAAACCAGACC 59.181 45.833 0.00 0.00 0.00 3.85
3655 3857 3.786368 TGACATGATGAAACCAGACCA 57.214 42.857 0.00 0.00 0.00 4.02
3656 3858 3.678289 TGACATGATGAAACCAGACCAG 58.322 45.455 0.00 0.00 0.00 4.00
3657 3859 3.072915 TGACATGATGAAACCAGACCAGT 59.927 43.478 0.00 0.00 0.00 4.00
3658 3860 4.285775 TGACATGATGAAACCAGACCAGTA 59.714 41.667 0.00 0.00 0.00 2.74
3659 3861 4.836825 ACATGATGAAACCAGACCAGTAG 58.163 43.478 0.00 0.00 0.00 2.57
3660 3862 4.287067 ACATGATGAAACCAGACCAGTAGT 59.713 41.667 0.00 0.00 0.00 2.73
3701 3913 8.822805 ACTCCTATACCTGTGAAGATTTTTACA 58.177 33.333 0.00 0.00 32.58 2.41
3745 3957 0.745845 GTAGCAGGGTGGATGCACAG 60.746 60.000 19.67 9.27 46.31 3.66
3859 4071 2.527100 CGAACTAACTGTTAGCTCCCG 58.473 52.381 23.74 17.62 39.30 5.14
3863 4075 2.358267 ACTAACTGTTAGCTCCCGATCG 59.642 50.000 23.74 8.51 36.71 3.69
3866 4078 1.549170 ACTGTTAGCTCCCGATCGTTT 59.451 47.619 15.09 0.00 0.00 3.60
3891 4103 3.809832 CGTGAACAGGAGTGACAAGATTT 59.190 43.478 0.00 0.00 0.00 2.17
4314 4542 1.717791 CGATACAGTACGGCGGTGGA 61.718 60.000 13.24 2.14 0.00 4.02
4548 4776 2.639286 CAACACCAAGTGAGCGCC 59.361 61.111 2.29 0.00 36.96 6.53
4584 4812 3.127533 GACGCAGGTGGGATGCAC 61.128 66.667 0.37 0.00 44.05 4.57
4673 4901 9.683069 GTTGGTTATCAATCATCAAATATGTCC 57.317 33.333 0.00 0.00 37.73 4.02
4674 4902 8.993404 TGGTTATCAATCATCAAATATGTCCA 57.007 30.769 0.00 0.00 0.00 4.02
4675 4903 9.418839 TGGTTATCAATCATCAAATATGTCCAA 57.581 29.630 0.00 0.00 0.00 3.53
4700 4928 1.414181 AGTGTTAGCCCTGATGATCCG 59.586 52.381 0.00 0.00 0.00 4.18
4703 4931 1.059098 TTAGCCCTGATGATCCGCAT 58.941 50.000 0.00 0.00 40.77 4.73
4807 5037 7.435488 CAGAATTGGACTACGACGATTCTATTT 59.565 37.037 0.00 0.00 42.89 1.40
4808 5038 7.980099 AGAATTGGACTACGACGATTCTATTTT 59.020 33.333 0.00 0.00 42.92 1.82
4809 5039 6.880822 TTGGACTACGACGATTCTATTTTG 57.119 37.500 0.00 0.00 0.00 2.44
4839 5070 3.540617 GTTGGTTTGTTCATTTTGGCCT 58.459 40.909 3.32 0.00 0.00 5.19
4867 5098 2.224695 ACTTGGCTTGGTAGGGTTACAC 60.225 50.000 0.00 0.00 0.00 2.90
4900 5137 2.105993 ACAGGGGGTTTGAACTGTACTC 59.894 50.000 0.00 0.00 41.95 2.59
5025 5263 8.652290 GGAACAGTAGTTAGATTATCCAGGATT 58.348 37.037 7.44 0.00 38.30 3.01
5069 5470 4.058817 GTTCTAGCTAGGCGCATATGTTT 58.941 43.478 20.58 0.00 42.61 2.83
5086 5489 7.533222 GCATATGTTTTCAGAATTCAGATAGCG 59.467 37.037 8.44 0.00 0.00 4.26
5167 5570 7.865707 ACAGTAAAGTTCATGTTGAAGATGTC 58.134 34.615 2.11 0.00 37.00 3.06
5170 5573 2.413112 AGTTCATGTTGAAGATGTCGCG 59.587 45.455 0.00 0.00 37.00 5.87
5195 5598 4.658063 TGGGAGTCCACATAATTCGTTTT 58.342 39.130 12.30 0.00 38.32 2.43
5198 5601 6.887545 TGGGAGTCCACATAATTCGTTTTAAT 59.112 34.615 12.30 0.00 38.32 1.40
5237 5640 7.015682 GGAGAGTGATTGTTTGAGGATATAGGA 59.984 40.741 0.00 0.00 0.00 2.94
5242 5645 7.873505 GTGATTGTTTGAGGATATAGGAGGTAC 59.126 40.741 0.00 0.00 0.00 3.34
5246 5649 7.541074 TGTTTGAGGATATAGGAGGTACCATA 58.459 38.462 15.94 3.25 42.04 2.74
5247 5650 8.184249 TGTTTGAGGATATAGGAGGTACCATAT 58.816 37.037 15.94 8.39 42.04 1.78
5249 5652 8.609617 TTGAGGATATAGGAGGTACCATATTG 57.390 38.462 15.94 0.00 42.04 1.90
5265 5668 6.071984 ACCATATTGACAGGTAACCAAACAA 58.928 36.000 0.00 0.00 32.92 2.83
5276 5679 6.954903 AGGTAACCAAACAAGCCAAAGCTAC 61.955 44.000 0.00 0.00 45.30 3.58
5283 5686 3.134127 GCCAAAGCTACTGCCGGG 61.134 66.667 2.18 0.00 40.80 5.73
5285 5688 1.600107 CCAAAGCTACTGCCGGGTA 59.400 57.895 2.18 0.00 40.80 3.69
5287 5690 1.612199 CCAAAGCTACTGCCGGGTAAA 60.612 52.381 2.18 0.00 40.80 2.01
5293 5696 2.289820 GCTACTGCCGGGTAAATAAAGC 59.710 50.000 2.18 0.00 0.00 3.51
5304 5707 7.201758 GCCGGGTAAATAAAGCTGTAGTTTTAT 60.202 37.037 2.18 7.61 41.19 1.40
5322 5725 8.887036 AGTTTTATCATACTGCATGACGATAA 57.113 30.769 0.00 0.00 46.41 1.75
5352 5755 4.110036 AGTTCAAAAACTGTGGCTGAAC 57.890 40.909 15.72 15.72 44.13 3.18
5374 5777 8.318412 TGAACAGATCTTATTGGTGTAAGCTTA 58.682 33.333 0.86 0.86 32.85 3.09
5375 5778 9.331282 GAACAGATCTTATTGGTGTAAGCTTAT 57.669 33.333 9.88 0.00 32.85 1.73
5376 5779 8.668510 ACAGATCTTATTGGTGTAAGCTTATG 57.331 34.615 9.88 1.13 32.85 1.90
5377 5780 7.227512 ACAGATCTTATTGGTGTAAGCTTATGC 59.772 37.037 9.88 5.64 40.05 3.14
5387 5790 4.622364 GCTTATGCTCCATTGCGC 57.378 55.556 0.00 0.00 36.03 6.09
5396 5799 1.127213 GCTCCATTGCGCAAATTGTTG 59.873 47.619 28.81 19.67 37.83 3.33
5406 5809 3.049206 CGCAAATTGTTGTAAGGGTGTG 58.951 45.455 0.00 0.00 37.06 3.82
5422 5825 3.307762 GGGTGTGGCTAAATCTCAAGTCT 60.308 47.826 0.00 0.00 0.00 3.24
5424 5827 3.614616 GTGTGGCTAAATCTCAAGTCTCG 59.385 47.826 0.00 0.00 0.00 4.04
5442 5845 6.931838 AGTCTCGGTCAAGTGACAAAATATA 58.068 36.000 13.21 0.00 46.47 0.86
5443 5846 7.556844 AGTCTCGGTCAAGTGACAAAATATAT 58.443 34.615 13.21 0.00 46.47 0.86
5444 5847 8.041323 AGTCTCGGTCAAGTGACAAAATATATT 58.959 33.333 13.21 0.00 46.47 1.28
5445 5848 9.309516 GTCTCGGTCAAGTGACAAAATATATTA 57.690 33.333 13.21 0.00 46.47 0.98
5446 5849 9.878667 TCTCGGTCAAGTGACAAAATATATTAA 57.121 29.630 13.21 0.00 46.47 1.40
5449 5852 9.205916 CGGTCAAGTGACAAAATATATTAAACG 57.794 33.333 13.21 0.00 46.47 3.60
5450 5853 9.498307 GGTCAAGTGACAAAATATATTAAACGG 57.502 33.333 13.21 0.00 46.47 4.44
5489 5892 9.852091 ATTAAAAGAAGATTTTGCACAGATCTC 57.148 29.630 0.00 0.00 30.19 2.75
5490 5893 6.889301 AAAGAAGATTTTGCACAGATCTCA 57.111 33.333 0.00 0.00 30.19 3.27
5491 5894 6.889301 AAGAAGATTTTGCACAGATCTCAA 57.111 33.333 0.00 0.00 30.19 3.02
5492 5895 7.463961 AAGAAGATTTTGCACAGATCTCAAT 57.536 32.000 0.00 0.00 30.19 2.57
5493 5896 6.853720 AGAAGATTTTGCACAGATCTCAATG 58.146 36.000 0.00 0.00 30.19 2.82
5494 5897 6.433404 AGAAGATTTTGCACAGATCTCAATGT 59.567 34.615 0.00 0.00 30.19 2.71
5495 5898 7.609146 AGAAGATTTTGCACAGATCTCAATGTA 59.391 33.333 0.00 0.00 30.19 2.29
5496 5899 7.692460 AGATTTTGCACAGATCTCAATGTAA 57.308 32.000 0.00 0.00 0.00 2.41
5497 5900 7.759465 AGATTTTGCACAGATCTCAATGTAAG 58.241 34.615 0.00 0.00 0.00 2.34
5498 5901 7.609146 AGATTTTGCACAGATCTCAATGTAAGA 59.391 33.333 0.00 0.00 0.00 2.10
5499 5902 7.692460 TTTTGCACAGATCTCAATGTAAGAT 57.308 32.000 0.00 0.00 36.19 2.40
5500 5903 6.915544 TTGCACAGATCTCAATGTAAGATC 57.084 37.500 0.00 5.22 46.28 2.75
5514 5917 9.617523 TCAATGTAAGATCTCATGAATAAAGCA 57.382 29.630 0.00 0.00 0.00 3.91
5517 5920 8.302965 TGTAAGATCTCATGAATAAAGCATCG 57.697 34.615 0.00 0.00 0.00 3.84
5518 5921 8.143835 TGTAAGATCTCATGAATAAAGCATCGA 58.856 33.333 0.00 0.00 0.00 3.59
5519 5922 7.418840 AAGATCTCATGAATAAAGCATCGAC 57.581 36.000 0.00 0.00 0.00 4.20
5520 5923 6.757237 AGATCTCATGAATAAAGCATCGACT 58.243 36.000 0.00 0.00 0.00 4.18
5521 5924 6.645827 AGATCTCATGAATAAAGCATCGACTG 59.354 38.462 0.00 0.00 0.00 3.51
5522 5925 5.906073 TCTCATGAATAAAGCATCGACTGA 58.094 37.500 0.00 0.00 0.00 3.41
5523 5926 5.981915 TCTCATGAATAAAGCATCGACTGAG 59.018 40.000 0.00 0.00 0.00 3.35
5524 5927 5.906073 TCATGAATAAAGCATCGACTGAGA 58.094 37.500 0.00 0.00 0.00 3.27
5525 5928 5.750547 TCATGAATAAAGCATCGACTGAGAC 59.249 40.000 0.00 0.00 0.00 3.36
5526 5929 5.330455 TGAATAAAGCATCGACTGAGACT 57.670 39.130 0.00 0.00 0.00 3.24
5527 5930 5.724328 TGAATAAAGCATCGACTGAGACTT 58.276 37.500 0.00 0.00 0.00 3.01
5528 5931 6.166279 TGAATAAAGCATCGACTGAGACTTT 58.834 36.000 0.00 0.00 37.15 2.66
5529 5932 6.091305 TGAATAAAGCATCGACTGAGACTTTG 59.909 38.462 0.00 0.00 35.30 2.77
5530 5933 3.393089 AAGCATCGACTGAGACTTTGT 57.607 42.857 0.00 0.00 0.00 2.83
5531 5934 3.393089 AGCATCGACTGAGACTTTGTT 57.607 42.857 0.00 0.00 0.00 2.83
5532 5935 4.521130 AGCATCGACTGAGACTTTGTTA 57.479 40.909 0.00 0.00 0.00 2.41
5533 5936 4.883083 AGCATCGACTGAGACTTTGTTAA 58.117 39.130 0.00 0.00 0.00 2.01
5534 5937 4.926238 AGCATCGACTGAGACTTTGTTAAG 59.074 41.667 0.00 0.00 37.40 1.85
5550 5953 9.174166 ACTTTGTTAAGTCTCAATTAACTGTGT 57.826 29.630 8.55 3.21 40.60 3.72
5554 5957 9.781834 TGTTAAGTCTCAATTAACTGTGTTTTG 57.218 29.630 8.55 0.00 41.56 2.44
5555 5958 9.997482 GTTAAGTCTCAATTAACTGTGTTTTGA 57.003 29.630 1.37 0.00 39.14 2.69
5556 5959 9.997482 TTAAGTCTCAATTAACTGTGTTTTGAC 57.003 29.630 0.00 0.00 0.00 3.18
5557 5960 7.624360 AGTCTCAATTAACTGTGTTTTGACA 57.376 32.000 0.00 0.00 0.00 3.58
5558 5961 8.225603 AGTCTCAATTAACTGTGTTTTGACAT 57.774 30.769 0.00 0.00 0.00 3.06
5559 5962 8.686334 AGTCTCAATTAACTGTGTTTTGACATT 58.314 29.630 0.00 0.00 0.00 2.71
5560 5963 8.958043 GTCTCAATTAACTGTGTTTTGACATTC 58.042 33.333 0.00 0.00 0.00 2.67
5561 5964 8.134895 TCTCAATTAACTGTGTTTTGACATTCC 58.865 33.333 0.00 0.00 0.00 3.01
5562 5965 7.206687 TCAATTAACTGTGTTTTGACATTCCC 58.793 34.615 0.00 0.00 0.00 3.97
5563 5966 6.723298 ATTAACTGTGTTTTGACATTCCCA 57.277 33.333 0.00 0.00 0.00 4.37
5564 5967 6.723298 TTAACTGTGTTTTGACATTCCCAT 57.277 33.333 0.00 0.00 0.00 4.00
5565 5968 5.612725 AACTGTGTTTTGACATTCCCATT 57.387 34.783 0.00 0.00 0.00 3.16
5566 5969 6.723298 AACTGTGTTTTGACATTCCCATTA 57.277 33.333 0.00 0.00 0.00 1.90
5567 5970 6.916360 ACTGTGTTTTGACATTCCCATTAT 57.084 33.333 0.00 0.00 0.00 1.28
5568 5971 7.301868 ACTGTGTTTTGACATTCCCATTATT 57.698 32.000 0.00 0.00 0.00 1.40
5569 5972 7.153985 ACTGTGTTTTGACATTCCCATTATTG 58.846 34.615 0.00 0.00 0.00 1.90
5570 5973 7.060383 TGTGTTTTGACATTCCCATTATTGT 57.940 32.000 0.00 0.00 0.00 2.71
5571 5974 8.183104 TGTGTTTTGACATTCCCATTATTGTA 57.817 30.769 0.00 0.00 0.00 2.41
5572 5975 8.642432 TGTGTTTTGACATTCCCATTATTGTAA 58.358 29.630 0.00 0.00 0.00 2.41
5573 5976 9.482627 GTGTTTTGACATTCCCATTATTGTAAA 57.517 29.630 0.00 0.00 0.00 2.01
5604 6007 9.668497 AAGATACTGAAATCTTTACCAGTAACC 57.332 33.333 0.00 0.00 42.28 2.85
5605 6008 9.047947 AGATACTGAAATCTTTACCAGTAACCT 57.952 33.333 0.00 0.00 42.92 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.102978 GTGTGACCAAGCCAAAGTGT 58.897 50.000 0.00 0.00 0.00 3.55
1 2 1.392589 AGTGTGACCAAGCCAAAGTG 58.607 50.000 0.00 0.00 0.00 3.16
2 3 3.290948 TTAGTGTGACCAAGCCAAAGT 57.709 42.857 0.00 0.00 0.00 2.66
3 4 4.074970 AGATTAGTGTGACCAAGCCAAAG 58.925 43.478 0.00 0.00 0.00 2.77
4 5 4.072131 GAGATTAGTGTGACCAAGCCAAA 58.928 43.478 0.00 0.00 0.00 3.28
5 6 3.559171 GGAGATTAGTGTGACCAAGCCAA 60.559 47.826 0.00 0.00 0.00 4.52
6 7 2.027192 GGAGATTAGTGTGACCAAGCCA 60.027 50.000 0.00 0.00 0.00 4.75
7 8 2.027192 TGGAGATTAGTGTGACCAAGCC 60.027 50.000 0.00 0.00 0.00 4.35
8 9 3.334583 TGGAGATTAGTGTGACCAAGC 57.665 47.619 0.00 0.00 0.00 4.01
9 10 4.003648 GGTTGGAGATTAGTGTGACCAAG 58.996 47.826 0.00 0.00 37.93 3.61
10 11 3.392947 TGGTTGGAGATTAGTGTGACCAA 59.607 43.478 0.00 0.00 33.36 3.67
11 12 2.976185 TGGTTGGAGATTAGTGTGACCA 59.024 45.455 0.00 0.00 33.84 4.02
12 13 3.695830 TGGTTGGAGATTAGTGTGACC 57.304 47.619 0.00 0.00 0.00 4.02
13 14 4.819630 TGTTTGGTTGGAGATTAGTGTGAC 59.180 41.667 0.00 0.00 0.00 3.67
14 15 5.042463 TGTTTGGTTGGAGATTAGTGTGA 57.958 39.130 0.00 0.00 0.00 3.58
15 16 5.049405 GTCTGTTTGGTTGGAGATTAGTGTG 60.049 44.000 0.00 0.00 0.00 3.82
16 17 5.063880 GTCTGTTTGGTTGGAGATTAGTGT 58.936 41.667 0.00 0.00 0.00 3.55
17 18 4.455877 GGTCTGTTTGGTTGGAGATTAGTG 59.544 45.833 0.00 0.00 0.00 2.74
18 19 4.506802 GGGTCTGTTTGGTTGGAGATTAGT 60.507 45.833 0.00 0.00 0.00 2.24
19 20 4.010349 GGGTCTGTTTGGTTGGAGATTAG 58.990 47.826 0.00 0.00 0.00 1.73
20 21 3.655777 AGGGTCTGTTTGGTTGGAGATTA 59.344 43.478 0.00 0.00 0.00 1.75
21 22 2.447047 AGGGTCTGTTTGGTTGGAGATT 59.553 45.455 0.00 0.00 0.00 2.40
22 23 2.040412 GAGGGTCTGTTTGGTTGGAGAT 59.960 50.000 0.00 0.00 0.00 2.75
23 24 1.420138 GAGGGTCTGTTTGGTTGGAGA 59.580 52.381 0.00 0.00 0.00 3.71
24 25 1.142870 TGAGGGTCTGTTTGGTTGGAG 59.857 52.381 0.00 0.00 0.00 3.86
25 26 1.133915 GTGAGGGTCTGTTTGGTTGGA 60.134 52.381 0.00 0.00 0.00 3.53
26 27 1.133792 AGTGAGGGTCTGTTTGGTTGG 60.134 52.381 0.00 0.00 0.00 3.77
27 28 2.158755 AGAGTGAGGGTCTGTTTGGTTG 60.159 50.000 0.00 0.00 0.00 3.77
28 29 2.104963 GAGAGTGAGGGTCTGTTTGGTT 59.895 50.000 0.00 0.00 0.00 3.67
29 30 1.694696 GAGAGTGAGGGTCTGTTTGGT 59.305 52.381 0.00 0.00 0.00 3.67
30 31 1.974236 AGAGAGTGAGGGTCTGTTTGG 59.026 52.381 0.00 0.00 0.00 3.28
31 32 2.896685 AGAGAGAGTGAGGGTCTGTTTG 59.103 50.000 0.00 0.00 0.00 2.93
32 33 3.161866 GAGAGAGAGTGAGGGTCTGTTT 58.838 50.000 0.00 0.00 0.00 2.83
33 34 2.378547 AGAGAGAGAGTGAGGGTCTGTT 59.621 50.000 0.00 0.00 0.00 3.16
34 35 1.992557 AGAGAGAGAGTGAGGGTCTGT 59.007 52.381 0.00 0.00 0.00 3.41
35 36 2.239654 AGAGAGAGAGAGTGAGGGTCTG 59.760 54.545 0.00 0.00 0.00 3.51
36 37 2.505819 GAGAGAGAGAGAGTGAGGGTCT 59.494 54.545 0.00 0.00 0.00 3.85
37 38 2.505819 AGAGAGAGAGAGAGTGAGGGTC 59.494 54.545 0.00 0.00 0.00 4.46
38 39 2.239654 CAGAGAGAGAGAGAGTGAGGGT 59.760 54.545 0.00 0.00 0.00 4.34
39 40 2.923121 CAGAGAGAGAGAGAGTGAGGG 58.077 57.143 0.00 0.00 0.00 4.30
40 41 2.292267 GCAGAGAGAGAGAGAGTGAGG 58.708 57.143 0.00 0.00 0.00 3.86
44 45 1.212935 GAGGGCAGAGAGAGAGAGAGT 59.787 57.143 0.00 0.00 0.00 3.24
77 78 0.741221 CAGCGTGGTAGGGAAGAAGC 60.741 60.000 0.00 0.00 0.00 3.86
108 109 1.968540 GAAGGAAACCAGCGCTGCT 60.969 57.895 31.96 19.58 40.77 4.24
109 110 2.563427 GAAGGAAACCAGCGCTGC 59.437 61.111 31.96 17.65 0.00 5.25
110 111 1.301677 GAGGAAGGAAACCAGCGCTG 61.302 60.000 30.52 30.52 0.00 5.18
111 112 1.003233 GAGGAAGGAAACCAGCGCT 60.003 57.895 2.64 2.64 0.00 5.92
112 113 2.041115 GGAGGAAGGAAACCAGCGC 61.041 63.158 0.00 0.00 0.00 5.92
113 114 1.377333 GGGAGGAAGGAAACCAGCG 60.377 63.158 0.00 0.00 0.00 5.18
114 115 0.034960 GAGGGAGGAAGGAAACCAGC 60.035 60.000 0.00 0.00 0.00 4.85
140 141 0.524604 GAAAGAGAGCGAGCGAGGAC 60.525 60.000 0.00 0.00 0.00 3.85
141 142 0.678366 AGAAAGAGAGCGAGCGAGGA 60.678 55.000 0.00 0.00 0.00 3.71
142 143 0.248458 GAGAAAGAGAGCGAGCGAGG 60.248 60.000 0.00 0.00 0.00 4.63
226 246 2.049063 ACTGTTCACTCGCTCGCC 60.049 61.111 0.00 0.00 0.00 5.54
232 252 0.668706 CTGCCTCCACTGTTCACTCG 60.669 60.000 0.00 0.00 0.00 4.18
259 279 3.721706 CTCACCTCCACCCCTGCC 61.722 72.222 0.00 0.00 0.00 4.85
261 281 2.203998 ACCTCACCTCCACCCCTG 60.204 66.667 0.00 0.00 0.00 4.45
262 282 2.203998 CACCTCACCTCCACCCCT 60.204 66.667 0.00 0.00 0.00 4.79
264 284 2.125766 GAACCACCTCACCTCCACCC 62.126 65.000 0.00 0.00 0.00 4.61
392 435 2.123077 AGAGAGGGCGATGAGGGG 60.123 66.667 0.00 0.00 0.00 4.79
398 441 2.909965 GCGGAGAGAGAGGGCGAT 60.910 66.667 0.00 0.00 0.00 4.58
409 452 1.306141 AGTTGGAGATGGGCGGAGA 60.306 57.895 0.00 0.00 0.00 3.71
428 479 0.176680 CACCAACCCCGATGAGAGAG 59.823 60.000 0.00 0.00 0.00 3.20
452 503 1.827789 AGGAGAGCTAGCCTCAGCG 60.828 63.158 25.17 0.00 46.52 5.18
463 514 2.825532 AGTGAGTGAAGAAGAGGAGAGC 59.174 50.000 0.00 0.00 0.00 4.09
470 521 3.571828 CAGTGGAGAGTGAGTGAAGAAGA 59.428 47.826 0.00 0.00 0.00 2.87
471 522 3.320541 ACAGTGGAGAGTGAGTGAAGAAG 59.679 47.826 0.00 0.00 0.00 2.85
472 523 3.300388 ACAGTGGAGAGTGAGTGAAGAA 58.700 45.455 0.00 0.00 0.00 2.52
567 618 2.223803 ACTGGTCTAGTGCTACTGCT 57.776 50.000 0.00 0.00 38.49 4.24
620 671 2.529136 CCACCACCACCAGGGAGA 60.529 66.667 0.00 0.00 41.15 3.71
621 672 2.854032 ACCACCACCACCAGGGAG 60.854 66.667 0.00 0.00 41.15 4.30
622 673 3.174987 CACCACCACCACCAGGGA 61.175 66.667 0.00 0.00 41.15 4.20
623 674 4.284550 CCACCACCACCACCAGGG 62.285 72.222 0.00 0.00 44.81 4.45
625 676 2.203337 CACCACCACCACCACCAG 60.203 66.667 0.00 0.00 0.00 4.00
626 677 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
627 678 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
628 679 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
660 711 3.571401 AGGAGCATGCAATTAAGTATGGC 59.429 43.478 21.98 0.00 32.99 4.40
708 762 2.731348 GACGGATCGATGCGGCTC 60.731 66.667 36.67 24.80 46.79 4.70
723 777 3.732471 CGGGAGAGAAAAGTGAGATCGAC 60.732 52.174 0.00 0.00 0.00 4.20
740 794 2.685380 AGCTTGGGAGGACGGGAG 60.685 66.667 0.00 0.00 0.00 4.30
741 795 2.683933 GAGCTTGGGAGGACGGGA 60.684 66.667 0.00 0.00 0.00 5.14
790 844 3.358118 AGGGAGAGAGTACAGTAAGCAC 58.642 50.000 0.00 0.00 0.00 4.40
824 878 3.707640 CTCTCCTCGGTCCTCGCCT 62.708 68.421 0.00 0.00 39.05 5.52
861 915 2.047655 CTTTCTGGGCCGTACGCA 60.048 61.111 10.49 1.43 40.31 5.24
893 952 0.028110 GGCGACGATCAAGAAATGGC 59.972 55.000 0.00 0.00 0.00 4.40
911 975 3.741476 GGAGCTTGCTTGTGCCGG 61.741 66.667 0.00 0.00 38.71 6.13
979 1043 1.194997 GCCAAATACACACGTACGCAA 59.805 47.619 16.72 0.00 0.00 4.85
1395 1484 2.359900 CCGAGAAATGGACAAAGGGAG 58.640 52.381 0.00 0.00 0.00 4.30
1403 1492 2.750888 GCACGGCCGAGAAATGGAC 61.751 63.158 35.90 5.10 0.00 4.02
1443 1536 0.319900 GATCACGGATGGATGTCGGG 60.320 60.000 0.00 0.00 0.00 5.14
1445 1538 0.389025 TGGATCACGGATGGATGTCG 59.611 55.000 0.00 0.00 0.00 4.35
1470 1563 2.442188 GCCGACGCACGAAGTTAGG 61.442 63.158 0.00 0.00 41.61 2.69
1485 1578 0.804364 TAAAGATGTTGCTGCTGCCG 59.196 50.000 13.47 0.00 38.71 5.69
1548 1641 1.956620 GAGCTTTTCGCCGGAGTTCG 61.957 60.000 5.05 0.00 40.39 3.95
1549 1642 1.788481 GAGCTTTTCGCCGGAGTTC 59.212 57.895 5.05 0.00 40.39 3.01
1612 1770 3.599285 ATTCTTGTTCGCCCGCCGA 62.599 57.895 0.00 0.00 45.77 5.54
1627 1785 1.424493 CTCCGGCTGACAGCGAATTC 61.424 60.000 20.82 5.99 43.62 2.17
1665 1823 2.191513 CAAGCGAGCCATCATGGGG 61.192 63.158 5.62 0.00 38.19 4.96
1666 1824 2.191513 CCAAGCGAGCCATCATGGG 61.192 63.158 5.62 0.00 38.19 4.00
1707 1865 1.963515 GAGGTTTTTGGTGAGGTGCAT 59.036 47.619 0.00 0.00 0.00 3.96
1719 1877 1.138859 GGGCAGCAAACAGAGGTTTTT 59.861 47.619 0.00 0.00 44.63 1.94
1769 1927 2.834549 TGCTTTTCAAAGTGGGGTTTCA 59.165 40.909 1.37 0.00 38.28 2.69
1770 1928 3.194861 GTGCTTTTCAAAGTGGGGTTTC 58.805 45.455 1.37 0.00 38.28 2.78
1771 1929 2.569404 TGTGCTTTTCAAAGTGGGGTTT 59.431 40.909 1.37 0.00 38.28 3.27
1774 1941 1.480137 TGTGTGCTTTTCAAAGTGGGG 59.520 47.619 1.37 0.00 38.28 4.96
1788 1955 4.810491 ACTTTTTGACATGGATTTGTGTGC 59.190 37.500 0.00 0.00 0.00 4.57
1816 1983 8.003044 AGATCAGATGTTTTCCATGGTGATTAT 58.997 33.333 12.58 2.50 35.44 1.28
1817 1984 7.283807 CAGATCAGATGTTTTCCATGGTGATTA 59.716 37.037 12.58 0.00 35.44 1.75
1818 1985 6.096423 CAGATCAGATGTTTTCCATGGTGATT 59.904 38.462 12.58 0.22 35.44 2.57
1819 1986 5.593095 CAGATCAGATGTTTTCCATGGTGAT 59.407 40.000 12.58 10.66 36.90 3.06
1839 2006 8.918202 TTTTGTTTTCAGGTAGATGTACAGAT 57.082 30.769 0.33 0.00 0.00 2.90
1840 2007 7.444183 CCTTTTGTTTTCAGGTAGATGTACAGA 59.556 37.037 0.33 0.00 0.00 3.41
1843 2010 7.660208 TCTCCTTTTGTTTTCAGGTAGATGTAC 59.340 37.037 0.00 0.00 0.00 2.90
1844 2011 7.741785 TCTCCTTTTGTTTTCAGGTAGATGTA 58.258 34.615 0.00 0.00 0.00 2.29
1845 2012 6.601332 TCTCCTTTTGTTTTCAGGTAGATGT 58.399 36.000 0.00 0.00 0.00 3.06
1846 2013 7.445402 TCTTCTCCTTTTGTTTTCAGGTAGATG 59.555 37.037 0.00 0.00 0.00 2.90
1847 2014 7.518188 TCTTCTCCTTTTGTTTTCAGGTAGAT 58.482 34.615 0.00 0.00 0.00 1.98
1848 2015 6.895782 TCTTCTCCTTTTGTTTTCAGGTAGA 58.104 36.000 0.00 0.00 0.00 2.59
2294 2465 2.367202 GGGGAGGACGAATGGAGCA 61.367 63.158 0.00 0.00 0.00 4.26
2299 2470 1.449601 CCGTTGGGGAGGACGAATG 60.450 63.158 0.00 0.00 38.47 2.67
2375 2546 1.290203 CCGAGGATGTGGAAATCGTG 58.710 55.000 0.00 0.00 0.00 4.35
2376 2547 0.902531 ACCGAGGATGTGGAAATCGT 59.097 50.000 0.00 0.00 0.00 3.73
2421 2598 5.563867 CGATCCCTGTCTTCTAGAAGCATAC 60.564 48.000 25.04 18.67 38.28 2.39
2445 2625 1.472376 CGGCTGACCTTTGAGATCCTC 60.472 57.143 0.00 0.00 0.00 3.71
2456 2636 2.665000 CCACATCACGGCTGACCT 59.335 61.111 0.00 0.00 0.00 3.85
2465 2645 2.612212 CCTAATTACACGGCCACATCAC 59.388 50.000 2.24 0.00 0.00 3.06
2493 2673 7.544566 CGTAACCTTCAAGCAAGAATCTTACTA 59.455 37.037 0.00 0.00 33.29 1.82
2494 2674 6.369065 CGTAACCTTCAAGCAAGAATCTTACT 59.631 38.462 0.00 0.00 33.29 2.24
2495 2675 6.402226 CCGTAACCTTCAAGCAAGAATCTTAC 60.402 42.308 0.00 0.00 33.29 2.34
2496 2676 5.642063 CCGTAACCTTCAAGCAAGAATCTTA 59.358 40.000 0.00 0.00 33.29 2.10
2508 2693 5.412286 GCTTAATTACACCCGTAACCTTCAA 59.588 40.000 0.00 0.00 40.35 2.69
2540 2725 2.494870 CCCAATTTCCCAAGCTTCTCTG 59.505 50.000 0.00 0.00 0.00 3.35
2568 2753 3.084039 TCAAGCACATGGAAATGGAGAC 58.916 45.455 0.00 0.00 0.00 3.36
2598 2783 1.098050 GAACCACATGCCACAGATCC 58.902 55.000 0.00 0.00 0.00 3.36
2706 2892 4.455877 ACAGTTTCCTCCGATCAAAATGAC 59.544 41.667 9.14 0.00 31.30 3.06
2716 2902 1.673920 GCAAACAACAGTTTCCTCCGA 59.326 47.619 0.00 0.00 33.39 4.55
2897 3083 6.882678 GGTGTAAGAAGGCTATTAACAGGAAA 59.117 38.462 0.00 0.00 0.00 3.13
2899 3085 5.486063 TGGTGTAAGAAGGCTATTAACAGGA 59.514 40.000 0.00 0.00 0.00 3.86
2900 3086 5.585047 GTGGTGTAAGAAGGCTATTAACAGG 59.415 44.000 0.00 0.00 0.00 4.00
2901 3087 5.291128 CGTGGTGTAAGAAGGCTATTAACAG 59.709 44.000 0.00 0.00 0.00 3.16
2902 3088 5.172934 CGTGGTGTAAGAAGGCTATTAACA 58.827 41.667 0.00 0.00 0.00 2.41
2907 3093 2.093658 CCACGTGGTGTAAGAAGGCTAT 60.094 50.000 26.95 0.00 0.00 2.97
2910 3096 0.034337 TCCACGTGGTGTAAGAAGGC 59.966 55.000 32.74 0.00 36.34 4.35
2932 3119 1.159713 TTTCTAGGCCGCATGCATCG 61.160 55.000 19.57 5.23 43.89 3.84
2933 3120 0.590195 CTTTCTAGGCCGCATGCATC 59.410 55.000 19.57 8.10 43.89 3.91
2935 3122 0.539518 TACTTTCTAGGCCGCATGCA 59.460 50.000 19.57 0.00 43.89 3.96
2955 3143 6.544197 TGTCTTACATTTTGTTACAGAGGCAA 59.456 34.615 0.00 0.00 0.00 4.52
2980 3168 8.688747 TTGGTTTTGAAAATGGCATAAGAAAT 57.311 26.923 0.00 0.00 0.00 2.17
3009 3197 8.415950 TCCATTTGTACCAAAATGTAAGACAT 57.584 30.769 14.28 0.00 43.17 3.06
3010 3198 7.504238 ACTCCATTTGTACCAAAATGTAAGACA 59.496 33.333 14.28 0.00 43.17 3.41
3038 3226 4.357918 AATATTCATGGGACGGAAGGAG 57.642 45.455 0.00 0.00 0.00 3.69
3039 3227 5.280470 CCATAATATTCATGGGACGGAAGGA 60.280 44.000 12.57 0.00 39.49 3.36
3040 3228 4.943705 CCATAATATTCATGGGACGGAAGG 59.056 45.833 12.57 0.00 39.49 3.46
3049 3237 4.517285 CCTCCGTCCCATAATATTCATGG 58.483 47.826 13.10 13.10 42.30 3.66
3050 3238 4.225042 TCCCTCCGTCCCATAATATTCATG 59.775 45.833 0.00 0.00 0.00 3.07
3051 3239 4.435137 TCCCTCCGTCCCATAATATTCAT 58.565 43.478 0.00 0.00 0.00 2.57
3052 3240 3.838317 CTCCCTCCGTCCCATAATATTCA 59.162 47.826 0.00 0.00 0.00 2.57
3053 3241 3.838903 ACTCCCTCCGTCCCATAATATTC 59.161 47.826 0.00 0.00 0.00 1.75
3054 3242 3.870559 ACTCCCTCCGTCCCATAATATT 58.129 45.455 0.00 0.00 0.00 1.28
3055 3243 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3056 3244 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
3057 3245 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3058 3246 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3059 3247 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3060 3248 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3061 3249 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
3062 3250 1.041437 CAATCTACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
3063 3251 1.777941 ACAATCTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3064 3252 4.205587 TCTTACAATCTACTCCCTCCGTC 58.794 47.826 0.00 0.00 0.00 4.79
3065 3253 4.246712 TCTTACAATCTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
3066 3254 5.074115 AGATCTTACAATCTACTCCCTCCG 58.926 45.833 0.00 0.00 34.21 4.63
3067 3255 6.661805 CCTAGATCTTACAATCTACTCCCTCC 59.338 46.154 0.00 0.00 37.24 4.30
3068 3256 7.463431 TCCTAGATCTTACAATCTACTCCCTC 58.537 42.308 0.00 0.00 37.24 4.30
3069 3257 7.409408 TCCTAGATCTTACAATCTACTCCCT 57.591 40.000 0.00 0.00 37.24 4.20
3070 3258 6.152154 GCTCCTAGATCTTACAATCTACTCCC 59.848 46.154 0.00 0.00 37.24 4.30
3071 3259 6.946009 AGCTCCTAGATCTTACAATCTACTCC 59.054 42.308 0.00 0.00 37.24 3.85
3072 3260 7.574967 GCAGCTCCTAGATCTTACAATCTACTC 60.575 44.444 0.00 0.00 37.24 2.59
3073 3261 6.208599 GCAGCTCCTAGATCTTACAATCTACT 59.791 42.308 0.00 0.00 37.24 2.57
3074 3262 6.015856 TGCAGCTCCTAGATCTTACAATCTAC 60.016 42.308 0.00 0.00 37.24 2.59
3075 3263 6.071320 TGCAGCTCCTAGATCTTACAATCTA 58.929 40.000 0.00 0.00 37.24 1.98
3080 3268 4.651045 TCATTGCAGCTCCTAGATCTTACA 59.349 41.667 0.00 0.00 0.00 2.41
3081 3269 5.207110 TCATTGCAGCTCCTAGATCTTAC 57.793 43.478 0.00 0.00 0.00 2.34
3107 3295 4.948847 AGTGCCAAAAATCTCAACTTTCC 58.051 39.130 0.00 0.00 0.00 3.13
3190 3388 3.118371 GCTCTTATATTATGGGACGGGGG 60.118 52.174 0.00 0.00 0.00 5.40
3191 3389 3.430374 CGCTCTTATATTATGGGACGGGG 60.430 52.174 0.00 0.00 0.00 5.73
3192 3390 3.194968 ACGCTCTTATATTATGGGACGGG 59.805 47.826 0.00 0.00 0.00 5.28
3193 3391 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3194 3392 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3195 3393 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3196 3394 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3197 3395 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
3198 3396 7.855904 GGTGTCAAAAACGCTCTTATATTATGG 59.144 37.037 0.00 0.00 38.49 2.74
3199 3397 8.394877 TGGTGTCAAAAACGCTCTTATATTATG 58.605 33.333 0.00 0.00 38.49 1.90
3200 3398 8.395633 GTGGTGTCAAAAACGCTCTTATATTAT 58.604 33.333 0.00 0.00 38.49 1.28
3201 3399 7.388224 TGTGGTGTCAAAAACGCTCTTATATTA 59.612 33.333 0.00 0.00 38.49 0.98
3202 3400 6.205853 TGTGGTGTCAAAAACGCTCTTATATT 59.794 34.615 0.00 0.00 38.49 1.28
3203 3401 5.703592 TGTGGTGTCAAAAACGCTCTTATAT 59.296 36.000 0.00 0.00 38.49 0.86
3204 3402 5.049954 GTGTGGTGTCAAAAACGCTCTTATA 60.050 40.000 0.00 0.00 38.49 0.98
3205 3403 3.880490 TGTGGTGTCAAAAACGCTCTTAT 59.120 39.130 0.00 0.00 38.49 1.73
3206 3404 3.064271 GTGTGGTGTCAAAAACGCTCTTA 59.936 43.478 0.00 0.00 38.49 2.10
3207 3405 2.088423 TGTGGTGTCAAAAACGCTCTT 58.912 42.857 0.00 0.00 38.49 2.85
3208 3406 1.400494 GTGTGGTGTCAAAAACGCTCT 59.600 47.619 0.00 0.00 38.49 4.09
3209 3407 1.400494 AGTGTGGTGTCAAAAACGCTC 59.600 47.619 0.00 0.00 38.49 5.03
3210 3408 1.459450 AGTGTGGTGTCAAAAACGCT 58.541 45.000 0.00 0.00 38.49 5.07
3211 3409 3.619233 ATAGTGTGGTGTCAAAAACGC 57.381 42.857 0.00 0.00 37.67 4.84
3212 3410 4.286910 CCAATAGTGTGGTGTCAAAAACG 58.713 43.478 0.00 0.00 33.63 3.60
3213 3411 4.048504 GCCAATAGTGTGGTGTCAAAAAC 58.951 43.478 0.00 0.00 41.12 2.43
3214 3412 3.701542 TGCCAATAGTGTGGTGTCAAAAA 59.298 39.130 0.00 0.00 41.12 1.94
3215 3413 3.291584 TGCCAATAGTGTGGTGTCAAAA 58.708 40.909 0.00 0.00 41.12 2.44
3216 3414 2.937519 TGCCAATAGTGTGGTGTCAAA 58.062 42.857 0.00 0.00 41.12 2.69
3217 3415 2.647683 TGCCAATAGTGTGGTGTCAA 57.352 45.000 0.00 0.00 41.12 3.18
3218 3416 2.647683 TTGCCAATAGTGTGGTGTCA 57.352 45.000 0.00 0.00 41.12 3.58
3219 3417 4.314740 TTTTTGCCAATAGTGTGGTGTC 57.685 40.909 0.00 0.00 41.12 3.67
3220 3418 4.630111 CATTTTTGCCAATAGTGTGGTGT 58.370 39.130 0.00 0.00 41.12 4.16
3221 3419 3.432933 GCATTTTTGCCAATAGTGTGGTG 59.567 43.478 0.00 0.00 41.12 4.17
3222 3420 3.324556 AGCATTTTTGCCAATAGTGTGGT 59.675 39.130 0.00 0.00 41.12 4.16
3223 3421 3.929094 AGCATTTTTGCCAATAGTGTGG 58.071 40.909 0.00 0.00 42.05 4.17
3224 3422 5.927954 AAAGCATTTTTGCCAATAGTGTG 57.072 34.783 0.00 0.00 31.62 3.82
3238 3436 8.576442 CCTCCGTTCCATAATATAAAAGCATTT 58.424 33.333 0.00 0.00 42.41 2.32
3239 3437 7.942341 TCCTCCGTTCCATAATATAAAAGCATT 59.058 33.333 0.00 0.00 0.00 3.56
3240 3438 7.458397 TCCTCCGTTCCATAATATAAAAGCAT 58.542 34.615 0.00 0.00 0.00 3.79
3241 3439 6.833041 TCCTCCGTTCCATAATATAAAAGCA 58.167 36.000 0.00 0.00 0.00 3.91
3242 3440 6.935208 ACTCCTCCGTTCCATAATATAAAAGC 59.065 38.462 0.00 0.00 0.00 3.51
3253 3451 9.503399 GAATAAAATTATACTCCTCCGTTCCAT 57.497 33.333 0.00 0.00 0.00 3.41
3254 3452 8.711170 AGAATAAAATTATACTCCTCCGTTCCA 58.289 33.333 0.00 0.00 0.00 3.53
3255 3453 8.989980 CAGAATAAAATTATACTCCTCCGTTCC 58.010 37.037 0.00 0.00 0.00 3.62
3256 3454 9.760077 TCAGAATAAAATTATACTCCTCCGTTC 57.240 33.333 0.00 0.00 0.00 3.95
3258 3456 9.543783 GTTCAGAATAAAATTATACTCCTCCGT 57.456 33.333 0.00 0.00 0.00 4.69
3259 3457 9.765795 AGTTCAGAATAAAATTATACTCCTCCG 57.234 33.333 0.00 0.00 0.00 4.63
3297 3495 8.891671 ACACTCTAAACGGTCTAAATAAACAA 57.108 30.769 0.00 0.00 0.00 2.83
3346 3544 6.422701 CGTGTGAAGTGTTTTTCTGGATAGTA 59.577 38.462 0.00 0.00 0.00 1.82
3385 3583 6.458342 CGGAAAGAAGAAAAGTTTGTGCTACT 60.458 38.462 0.00 0.00 0.00 2.57
3386 3584 5.681543 CGGAAAGAAGAAAAGTTTGTGCTAC 59.318 40.000 0.00 0.00 0.00 3.58
3387 3585 5.587043 TCGGAAAGAAGAAAAGTTTGTGCTA 59.413 36.000 0.00 0.00 0.00 3.49
3535 3734 6.181206 AGAAACTTCAGGCCTAGATATTCC 57.819 41.667 3.98 0.00 0.00 3.01
3585 3787 6.509418 TTAACTGGCTTTCACATGAATACC 57.491 37.500 0.00 1.34 33.54 2.73
3590 3792 5.711506 ACATCATTAACTGGCTTTCACATGA 59.288 36.000 0.00 0.00 0.00 3.07
3620 3822 7.341030 TCATCATGTCATAGGTGTTCAATTCT 58.659 34.615 0.00 0.00 0.00 2.40
3656 3858 7.054491 AGGAGTGCTACTAGTAGACTACTAC 57.946 44.000 28.12 25.90 46.49 2.73
3657 3859 8.954834 ATAGGAGTGCTACTAGTAGACTACTA 57.045 38.462 31.16 31.16 38.94 1.82
3658 3860 7.860649 ATAGGAGTGCTACTAGTAGACTACT 57.139 40.000 29.91 29.91 42.68 2.57
3659 3861 8.034804 GGTATAGGAGTGCTACTAGTAGACTAC 58.965 44.444 30.09 26.24 35.21 2.73
3660 3862 7.955185 AGGTATAGGAGTGCTACTAGTAGACTA 59.045 40.741 30.09 21.04 35.21 2.59
3701 3913 7.719633 ACTGAACTGTAACATGGTAAGTTTCAT 59.280 33.333 15.12 5.82 31.45 2.57
3707 3919 6.163476 TGCTACTGAACTGTAACATGGTAAG 58.837 40.000 0.00 0.00 0.00 2.34
3745 3957 8.601845 ATTACAAAAACAAGCTGTAAATTCCC 57.398 30.769 0.00 0.00 38.61 3.97
3789 4001 2.159043 AGCCATGTCGACCAACTGATAG 60.159 50.000 14.12 0.00 0.00 2.08
3790 4002 1.831106 AGCCATGTCGACCAACTGATA 59.169 47.619 14.12 0.00 0.00 2.15
3863 4075 2.287103 GTCACTCCTGTTCACGGAAAAC 59.713 50.000 0.00 0.00 0.00 2.43
3866 4078 1.116308 TGTCACTCCTGTTCACGGAA 58.884 50.000 0.00 0.00 0.00 4.30
4402 4630 1.906994 TTAGACGCGTGCAACATGGC 61.907 55.000 20.70 0.00 35.74 4.40
4584 4812 1.392710 ATGACGAGAAGGGTAGGGCG 61.393 60.000 0.00 0.00 0.00 6.13
4673 4901 5.614308 TCATCAGGGCTAACACTATCATTG 58.386 41.667 0.00 0.00 0.00 2.82
4674 4902 5.894298 TCATCAGGGCTAACACTATCATT 57.106 39.130 0.00 0.00 0.00 2.57
4675 4903 5.046014 GGATCATCAGGGCTAACACTATCAT 60.046 44.000 0.00 0.00 0.00 2.45
4700 4928 5.278660 GGACATATCTTGGGTGATTTCATGC 60.279 44.000 0.00 0.00 0.00 4.06
4703 4931 5.449297 TGGACATATCTTGGGTGATTTCA 57.551 39.130 0.00 0.00 0.00 2.69
4807 5037 4.398358 TGAACAAACCAACCGATACAACAA 59.602 37.500 0.00 0.00 0.00 2.83
4808 5038 3.945921 TGAACAAACCAACCGATACAACA 59.054 39.130 0.00 0.00 0.00 3.33
4809 5039 4.555348 TGAACAAACCAACCGATACAAC 57.445 40.909 0.00 0.00 0.00 3.32
4839 5070 0.179043 TACCAAGCCAAGTGCACGAA 60.179 50.000 12.01 0.00 44.83 3.85
4867 5098 0.035056 CCCCCTGTACTTTCTGCTGG 60.035 60.000 0.00 0.00 0.00 4.85
4900 5137 4.433186 TTTTATGCCAATTCCACTGTCG 57.567 40.909 0.00 0.00 0.00 4.35
4950 5188 1.664649 TGAGAAACAGGCAGACGCG 60.665 57.895 3.53 3.53 39.92 6.01
5008 5246 6.122964 GGCCCATAATCCTGGATAATCTAAC 58.877 44.000 10.13 0.00 38.69 2.34
5025 5263 0.771127 GGCTATGGAAGTGGCCCATA 59.229 55.000 0.00 0.00 43.63 2.74
5069 5470 5.126222 AGAGTGTCGCTATCTGAATTCTGAA 59.874 40.000 17.62 7.74 0.00 3.02
5086 5489 4.926238 CACAGTTCCACAAGATAGAGTGTC 59.074 45.833 0.00 0.00 33.99 3.67
5152 5555 2.362169 TCGCGACATCTTCAACATGA 57.638 45.000 3.71 0.00 0.00 3.07
5167 5570 0.104120 TATGTGGACTCCCATTCGCG 59.896 55.000 0.00 0.00 45.68 5.87
5170 5573 4.451900 ACGAATTATGTGGACTCCCATTC 58.548 43.478 0.00 0.00 45.68 2.67
5195 5598 6.202331 TCACTCTCCCTAGAACATGGAATTA 58.798 40.000 0.00 0.00 0.00 1.40
5198 5601 4.061131 TCACTCTCCCTAGAACATGGAA 57.939 45.455 0.00 0.00 0.00 3.53
5208 5611 4.425772 TCCTCAAACAATCACTCTCCCTA 58.574 43.478 0.00 0.00 0.00 3.53
5237 5640 5.034200 TGGTTACCTGTCAATATGGTACCT 58.966 41.667 14.36 1.08 36.23 3.08
5242 5645 6.582677 TTGTTTGGTTACCTGTCAATATGG 57.417 37.500 2.07 0.00 0.00 2.74
5246 5649 3.320826 GGCTTGTTTGGTTACCTGTCAAT 59.679 43.478 2.07 0.00 0.00 2.57
5247 5650 2.691011 GGCTTGTTTGGTTACCTGTCAA 59.309 45.455 2.07 4.52 0.00 3.18
5249 5652 2.303175 TGGCTTGTTTGGTTACCTGTC 58.697 47.619 2.07 0.00 0.00 3.51
5276 5679 2.365582 ACAGCTTTATTTACCCGGCAG 58.634 47.619 0.00 0.00 0.00 4.85
5278 5681 3.538591 ACTACAGCTTTATTTACCCGGC 58.461 45.455 0.00 0.00 0.00 6.13
5287 5690 9.613428 TGCAGTATGATAAAACTACAGCTTTAT 57.387 29.630 0.00 0.00 39.69 1.40
5293 5696 7.435192 TCGTCATGCAGTATGATAAAACTACAG 59.565 37.037 4.31 0.00 46.85 2.74
5304 5707 9.788960 GATAACTATTATCGTCATGCAGTATGA 57.211 33.333 0.00 0.00 36.92 2.15
5308 5711 7.661968 ACTGATAACTATTATCGTCATGCAGT 58.338 34.615 0.00 0.00 43.90 4.40
5310 5713 8.141268 TGAACTGATAACTATTATCGTCATGCA 58.859 33.333 0.00 0.00 43.90 3.96
5352 5755 7.579726 GCATAAGCTTACACCAATAAGATCTG 58.420 38.462 8.70 0.00 34.59 2.90
5376 5779 1.127213 CAACAATTTGCGCAATGGAGC 59.873 47.619 25.64 0.00 40.59 4.70
5377 5780 2.406130 ACAACAATTTGCGCAATGGAG 58.594 42.857 25.64 17.69 36.00 3.86
5378 5781 2.522836 ACAACAATTTGCGCAATGGA 57.477 40.000 25.64 9.94 36.00 3.41
5379 5782 3.123284 CCTTACAACAATTTGCGCAATGG 59.877 43.478 25.64 18.02 36.00 3.16
5380 5783 3.123284 CCCTTACAACAATTTGCGCAATG 59.877 43.478 25.64 22.10 36.00 2.82
5386 5789 3.389221 CCACACCCTTACAACAATTTGC 58.611 45.455 0.00 0.00 36.00 3.68
5387 5790 3.069443 AGCCACACCCTTACAACAATTTG 59.931 43.478 0.00 0.00 38.83 2.32
5396 5799 4.216411 TGAGATTTAGCCACACCCTTAC 57.784 45.455 0.00 0.00 0.00 2.34
5406 5809 3.119101 TGACCGAGACTTGAGATTTAGCC 60.119 47.826 0.00 0.00 0.00 3.93
5424 5827 9.498307 CCGTTTAATATATTTTGTCACTTGACC 57.502 33.333 2.68 0.00 44.15 4.02
5463 5866 9.852091 GAGATCTGTGCAAAATCTTCTTTTAAT 57.148 29.630 0.00 0.00 0.00 1.40
5464 5867 8.849168 TGAGATCTGTGCAAAATCTTCTTTTAA 58.151 29.630 0.00 0.00 0.00 1.52
5465 5868 8.394971 TGAGATCTGTGCAAAATCTTCTTTTA 57.605 30.769 0.00 0.00 0.00 1.52
5466 5869 7.281040 TGAGATCTGTGCAAAATCTTCTTTT 57.719 32.000 0.00 0.00 0.00 2.27
5467 5870 6.889301 TGAGATCTGTGCAAAATCTTCTTT 57.111 33.333 0.00 0.00 0.00 2.52
5468 5871 6.889301 TTGAGATCTGTGCAAAATCTTCTT 57.111 33.333 0.00 0.00 0.00 2.52
5469 5872 6.433404 ACATTGAGATCTGTGCAAAATCTTCT 59.567 34.615 0.00 0.00 0.00 2.85
5470 5873 6.618811 ACATTGAGATCTGTGCAAAATCTTC 58.381 36.000 0.00 3.80 0.00 2.87
5471 5874 6.585695 ACATTGAGATCTGTGCAAAATCTT 57.414 33.333 0.00 0.00 0.00 2.40
5472 5875 7.609146 TCTTACATTGAGATCTGTGCAAAATCT 59.391 33.333 0.00 6.47 0.00 2.40
5473 5876 7.755591 TCTTACATTGAGATCTGTGCAAAATC 58.244 34.615 0.00 0.00 0.00 2.17
5474 5877 7.692460 TCTTACATTGAGATCTGTGCAAAAT 57.308 32.000 0.00 0.00 0.00 1.82
5475 5878 7.692460 ATCTTACATTGAGATCTGTGCAAAA 57.308 32.000 0.00 0.00 0.00 2.44
5476 5879 7.312657 GATCTTACATTGAGATCTGTGCAAA 57.687 36.000 0.00 0.00 43.88 3.68
5477 5880 6.915544 GATCTTACATTGAGATCTGTGCAA 57.084 37.500 0.00 0.00 43.88 4.08
5488 5891 9.617523 TGCTTTATTCATGAGATCTTACATTGA 57.382 29.630 0.00 0.00 0.00 2.57
5491 5894 8.933807 CGATGCTTTATTCATGAGATCTTACAT 58.066 33.333 0.00 0.00 0.00 2.29
5492 5895 8.143835 TCGATGCTTTATTCATGAGATCTTACA 58.856 33.333 0.00 0.00 0.00 2.41
5493 5896 8.431593 GTCGATGCTTTATTCATGAGATCTTAC 58.568 37.037 0.00 0.00 0.00 2.34
5494 5897 8.363390 AGTCGATGCTTTATTCATGAGATCTTA 58.637 33.333 0.00 0.00 0.00 2.10
5495 5898 7.171167 CAGTCGATGCTTTATTCATGAGATCTT 59.829 37.037 0.00 0.00 0.00 2.40
5496 5899 6.645827 CAGTCGATGCTTTATTCATGAGATCT 59.354 38.462 0.00 0.00 0.00 2.75
5497 5900 6.644181 TCAGTCGATGCTTTATTCATGAGATC 59.356 38.462 0.00 0.00 0.00 2.75
5498 5901 6.519382 TCAGTCGATGCTTTATTCATGAGAT 58.481 36.000 0.00 0.00 0.00 2.75
5499 5902 5.906073 TCAGTCGATGCTTTATTCATGAGA 58.094 37.500 0.00 0.00 0.00 3.27
5500 5903 5.981915 TCTCAGTCGATGCTTTATTCATGAG 59.018 40.000 0.00 0.00 0.00 2.90
5501 5904 5.750547 GTCTCAGTCGATGCTTTATTCATGA 59.249 40.000 0.00 0.00 0.00 3.07
5502 5905 5.752472 AGTCTCAGTCGATGCTTTATTCATG 59.248 40.000 0.00 0.00 0.00 3.07
5503 5906 5.911752 AGTCTCAGTCGATGCTTTATTCAT 58.088 37.500 0.00 0.00 0.00 2.57
5504 5907 5.330455 AGTCTCAGTCGATGCTTTATTCA 57.670 39.130 0.00 0.00 0.00 2.57
5505 5908 6.091441 ACAAAGTCTCAGTCGATGCTTTATTC 59.909 38.462 0.00 0.00 0.00 1.75
5506 5909 5.934625 ACAAAGTCTCAGTCGATGCTTTATT 59.065 36.000 0.00 0.00 0.00 1.40
5507 5910 5.482908 ACAAAGTCTCAGTCGATGCTTTAT 58.517 37.500 0.00 0.00 0.00 1.40
5508 5911 4.883083 ACAAAGTCTCAGTCGATGCTTTA 58.117 39.130 0.00 0.00 0.00 1.85
5509 5912 3.733337 ACAAAGTCTCAGTCGATGCTTT 58.267 40.909 0.00 0.00 0.00 3.51
5510 5913 3.393089 ACAAAGTCTCAGTCGATGCTT 57.607 42.857 0.00 0.00 0.00 3.91
5511 5914 3.393089 AACAAAGTCTCAGTCGATGCT 57.607 42.857 0.00 0.00 0.00 3.79
5512 5915 4.686554 ACTTAACAAAGTCTCAGTCGATGC 59.313 41.667 0.00 0.00 0.00 3.91
5513 5916 6.382821 GACTTAACAAAGTCTCAGTCGATG 57.617 41.667 10.31 0.00 44.32 3.84
5524 5927 9.174166 ACACAGTTAATTGAGACTTAACAAAGT 57.826 29.630 4.81 0.00 40.12 2.66
5528 5931 9.781834 CAAAACACAGTTAATTGAGACTTAACA 57.218 29.630 4.81 0.00 40.12 2.41
5529 5932 9.997482 TCAAAACACAGTTAATTGAGACTTAAC 57.003 29.630 4.81 0.00 38.68 2.01
5530 5933 9.997482 GTCAAAACACAGTTAATTGAGACTTAA 57.003 29.630 4.81 0.00 31.24 1.85
5531 5934 9.168451 TGTCAAAACACAGTTAATTGAGACTTA 57.832 29.630 4.81 0.00 31.24 2.24
5532 5935 8.050778 TGTCAAAACACAGTTAATTGAGACTT 57.949 30.769 4.81 0.00 31.24 3.01
5533 5936 7.624360 TGTCAAAACACAGTTAATTGAGACT 57.376 32.000 4.81 0.00 31.24 3.24
5534 5937 8.856490 AATGTCAAAACACAGTTAATTGAGAC 57.144 30.769 4.81 4.01 38.48 3.36
5535 5938 8.134895 GGAATGTCAAAACACAGTTAATTGAGA 58.865 33.333 4.81 0.00 38.48 3.27
5536 5939 7.382218 GGGAATGTCAAAACACAGTTAATTGAG 59.618 37.037 4.81 0.00 38.48 3.02
5537 5940 7.147828 TGGGAATGTCAAAACACAGTTAATTGA 60.148 33.333 4.81 0.00 38.48 2.57
5538 5941 6.983307 TGGGAATGTCAAAACACAGTTAATTG 59.017 34.615 0.00 0.00 38.48 2.32
5539 5942 7.118496 TGGGAATGTCAAAACACAGTTAATT 57.882 32.000 0.00 0.00 38.48 1.40
5540 5943 6.723298 TGGGAATGTCAAAACACAGTTAAT 57.277 33.333 0.00 0.00 38.48 1.40
5541 5944 6.723298 ATGGGAATGTCAAAACACAGTTAA 57.277 33.333 0.00 0.00 38.48 2.01
5542 5945 6.723298 AATGGGAATGTCAAAACACAGTTA 57.277 33.333 0.00 0.00 38.48 2.24
5543 5946 5.612725 AATGGGAATGTCAAAACACAGTT 57.387 34.783 0.00 0.00 38.48 3.16
5544 5947 6.916360 ATAATGGGAATGTCAAAACACAGT 57.084 33.333 0.00 0.00 38.48 3.55
5545 5948 7.153985 ACAATAATGGGAATGTCAAAACACAG 58.846 34.615 0.00 0.00 38.48 3.66
5546 5949 7.060383 ACAATAATGGGAATGTCAAAACACA 57.940 32.000 0.00 0.00 38.48 3.72
5547 5950 9.482627 TTTACAATAATGGGAATGTCAAAACAC 57.517 29.630 0.00 0.00 38.48 3.32
5578 5981 9.668497 GGTTACTGGTAAAGATTTCAGTATCTT 57.332 33.333 0.00 0.00 44.62 2.40
5579 5982 9.047947 AGGTTACTGGTAAAGATTTCAGTATCT 57.952 33.333 0.00 0.00 40.82 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.