Multiple sequence alignment - TraesCS3A01G432300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G432300 chr3A 100.000 2624 0 0 1 2624 673464856 673462233 0.000000e+00 4846
1 TraesCS3A01G432300 chr3A 96.794 1965 62 1 661 2624 84658337 84660301 0.000000e+00 3278
2 TraesCS3A01G432300 chr3A 90.302 1722 92 27 967 2624 749191989 749193699 0.000000e+00 2185
3 TraesCS3A01G432300 chr3A 97.956 587 9 3 1 585 596498108 596497523 0.000000e+00 1014
4 TraesCS3A01G432300 chr3A 95.748 588 12 5 1 585 408024220 408024797 0.000000e+00 935
5 TraesCS3A01G432300 chr1A 96.953 1969 49 3 657 2624 287792001 287790043 0.000000e+00 3293
6 TraesCS3A01G432300 chr1A 96.447 1970 57 9 657 2624 286251330 286249372 0.000000e+00 3238
7 TraesCS3A01G432300 chr1A 91.724 145 10 1 443 585 49290414 49290270 1.590000e-47 200
8 TraesCS3A01G432300 chr1A 80.899 267 38 9 3 267 22762669 22762414 5.730000e-47 198
9 TraesCS3A01G432300 chr1B 94.827 1817 62 14 661 2446 111678082 111679897 0.000000e+00 2806
10 TraesCS3A01G432300 chr1B 96.446 1463 49 3 986 2446 365459126 365460587 0.000000e+00 2410
11 TraesCS3A01G432300 chr1B 98.438 192 3 0 657 848 111684530 111684339 3.230000e-89 339
12 TraesCS3A01G432300 chr1B 86.878 221 23 3 29 244 547279958 547280177 2.610000e-60 243
13 TraesCS3A01G432300 chr1B 83.966 237 26 8 37 267 561548979 561548749 1.580000e-52 217
14 TraesCS3A01G432300 chr2B 94.355 1807 69 13 661 2446 54342319 54340525 0.000000e+00 2741
15 TraesCS3A01G432300 chr2B 95.021 241 9 1 2384 2624 152162683 152162920 2.470000e-100 375
16 TraesCS3A01G432300 chr2B 92.453 265 14 4 657 921 520689919 520689661 8.870000e-100 374
17 TraesCS3A01G432300 chr2B 96.759 216 7 0 2409 2624 152165555 152165770 6.900000e-96 361
18 TraesCS3A01G432300 chr5A 97.059 1462 40 3 987 2446 535680149 535681609 0.000000e+00 2459
19 TraesCS3A01G432300 chr5A 97.846 1068 23 0 661 1728 510267003 510265936 0.000000e+00 1845
20 TraesCS3A01G432300 chr5A 94.150 906 23 4 1748 2624 510265964 510265060 0.000000e+00 1352
21 TraesCS3A01G432300 chr5A 91.369 336 24 3 661 992 535678931 535679265 3.080000e-124 455
22 TraesCS3A01G432300 chr5A 92.063 315 16 6 661 971 666938391 666938700 4.010000e-118 435
23 TraesCS3A01G432300 chr5A 95.455 154 7 0 432 585 52404831 52404984 2.020000e-61 246
24 TraesCS3A01G432300 chr6A 96.200 1500 51 4 933 2427 71535671 71534173 0.000000e+00 2449
25 TraesCS3A01G432300 chr5B 93.633 1649 36 7 1002 2624 271125082 271126687 0.000000e+00 2399
26 TraesCS3A01G432300 chr5B 97.917 192 3 1 657 848 271134972 271134782 5.410000e-87 331
27 TraesCS3A01G432300 chr7A 92.538 1702 50 18 949 2624 37860486 37858836 0.000000e+00 2368
28 TraesCS3A01G432300 chr7A 97.917 192 4 0 657 848 37854384 37854575 1.510000e-87 333
29 TraesCS3A01G432300 chr3D 86.188 2020 153 40 661 2624 23223788 23221839 0.000000e+00 2069
30 TraesCS3A01G432300 chr3D 80.657 274 37 11 2 267 567092862 567092597 5.730000e-47 198
31 TraesCS3A01G432300 chr4D 92.737 358 23 3 230 585 362412438 362412082 5.010000e-142 514
32 TraesCS3A01G432300 chr1D 92.697 356 23 3 231 585 65844483 65844836 6.480000e-141 510
33 TraesCS3A01G432300 chr1D 82.463 268 34 9 2 267 10929290 10929546 3.400000e-54 222
34 TraesCS3A01G432300 chr7D 90.390 385 34 3 204 585 63780405 63780021 1.080000e-138 503
35 TraesCS3A01G432300 chr7D 92.000 325 24 2 262 585 156103972 156104295 3.080000e-124 455
36 TraesCS3A01G432300 chr7D 82.156 269 34 9 3 267 251037410 251037668 4.400000e-53 219
37 TraesCS3A01G432300 chr6B 92.049 327 16 7 661 982 485308621 485308300 3.980000e-123 451
38 TraesCS3A01G432300 chr6B 90.881 329 24 6 656 982 485307214 485307538 1.120000e-118 436
39 TraesCS3A01G432300 chr6B 89.595 346 33 3 231 574 708792445 708792101 1.120000e-118 436
40 TraesCS3A01G432300 chr6B 92.460 252 16 2 657 907 96336754 96336505 8.930000e-95 357
41 TraesCS3A01G432300 chr5D 90.000 350 33 2 237 584 327734184 327733835 3.980000e-123 451
42 TraesCS3A01G432300 chr4A 93.644 236 14 1 657 892 135346950 135347184 4.160000e-93 351
43 TraesCS3A01G432300 chr2D 82.288 271 37 7 2 267 440965757 440966021 9.450000e-55 224
44 TraesCS3A01G432300 chr3B 88.485 165 15 3 285 448 260378974 260378813 2.060000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G432300 chr3A 673462233 673464856 2623 True 4846.0 4846 100.000 1 2624 1 chr3A.!!$R2 2623
1 TraesCS3A01G432300 chr3A 84658337 84660301 1964 False 3278.0 3278 96.794 661 2624 1 chr3A.!!$F1 1963
2 TraesCS3A01G432300 chr3A 749191989 749193699 1710 False 2185.0 2185 90.302 967 2624 1 chr3A.!!$F3 1657
3 TraesCS3A01G432300 chr3A 596497523 596498108 585 True 1014.0 1014 97.956 1 585 1 chr3A.!!$R1 584
4 TraesCS3A01G432300 chr3A 408024220 408024797 577 False 935.0 935 95.748 1 585 1 chr3A.!!$F2 584
5 TraesCS3A01G432300 chr1A 287790043 287792001 1958 True 3293.0 3293 96.953 657 2624 1 chr1A.!!$R4 1967
6 TraesCS3A01G432300 chr1A 286249372 286251330 1958 True 3238.0 3238 96.447 657 2624 1 chr1A.!!$R3 1967
7 TraesCS3A01G432300 chr1B 111678082 111679897 1815 False 2806.0 2806 94.827 661 2446 1 chr1B.!!$F1 1785
8 TraesCS3A01G432300 chr1B 365459126 365460587 1461 False 2410.0 2410 96.446 986 2446 1 chr1B.!!$F2 1460
9 TraesCS3A01G432300 chr2B 54340525 54342319 1794 True 2741.0 2741 94.355 661 2446 1 chr2B.!!$R1 1785
10 TraesCS3A01G432300 chr2B 152162683 152165770 3087 False 368.0 375 95.890 2384 2624 2 chr2B.!!$F1 240
11 TraesCS3A01G432300 chr5A 510265060 510267003 1943 True 1598.5 1845 95.998 661 2624 2 chr5A.!!$R1 1963
12 TraesCS3A01G432300 chr5A 535678931 535681609 2678 False 1457.0 2459 94.214 661 2446 2 chr5A.!!$F3 1785
13 TraesCS3A01G432300 chr6A 71534173 71535671 1498 True 2449.0 2449 96.200 933 2427 1 chr6A.!!$R1 1494
14 TraesCS3A01G432300 chr5B 271125082 271126687 1605 False 2399.0 2399 93.633 1002 2624 1 chr5B.!!$F1 1622
15 TraesCS3A01G432300 chr7A 37858836 37860486 1650 True 2368.0 2368 92.538 949 2624 1 chr7A.!!$R1 1675
16 TraesCS3A01G432300 chr3D 23221839 23223788 1949 True 2069.0 2069 86.188 661 2624 1 chr3D.!!$R1 1963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 427 0.033503 TGCTCGTGTGGGGAGATCTA 60.034 55.0 0.0 0.0 33.27 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2928 0.103937 GCGAAGGGAGTGGATGAGAG 59.896 60.0 0.0 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
261 264 6.966534 AAAAATCCACAACACAATCTCTCT 57.033 33.333 0.00 0.00 0.00 3.10
262 265 6.966534 AAAATCCACAACACAATCTCTCTT 57.033 33.333 0.00 0.00 0.00 2.85
263 266 8.463930 AAAAATCCACAACACAATCTCTCTTA 57.536 30.769 0.00 0.00 0.00 2.10
264 267 7.440523 AAATCCACAACACAATCTCTCTTAC 57.559 36.000 0.00 0.00 0.00 2.34
265 268 5.545063 TCCACAACACAATCTCTCTTACA 57.455 39.130 0.00 0.00 0.00 2.41
266 269 5.924356 TCCACAACACAATCTCTCTTACAA 58.076 37.500 0.00 0.00 0.00 2.41
267 270 6.353323 TCCACAACACAATCTCTCTTACAAA 58.647 36.000 0.00 0.00 0.00 2.83
268 271 6.826231 TCCACAACACAATCTCTCTTACAAAA 59.174 34.615 0.00 0.00 0.00 2.44
269 272 7.338196 TCCACAACACAATCTCTCTTACAAAAA 59.662 33.333 0.00 0.00 0.00 1.94
304 307 3.883830 TTTTTGCAACATCACCACAGT 57.116 38.095 0.00 0.00 0.00 3.55
305 308 3.883830 TTTTGCAACATCACCACAGTT 57.116 38.095 0.00 0.00 0.00 3.16
306 309 2.867287 TTGCAACATCACCACAGTTG 57.133 45.000 0.00 0.00 44.01 3.16
309 312 2.867287 CAACATCACCACAGTTGCAA 57.133 45.000 0.00 0.00 36.59 4.08
310 313 3.162202 CAACATCACCACAGTTGCAAA 57.838 42.857 0.00 0.00 36.59 3.68
311 314 3.117794 CAACATCACCACAGTTGCAAAG 58.882 45.455 0.00 0.00 36.59 2.77
312 315 2.378038 ACATCACCACAGTTGCAAAGT 58.622 42.857 0.00 0.00 0.00 2.66
313 316 2.760092 ACATCACCACAGTTGCAAAGTT 59.240 40.909 0.00 0.00 0.00 2.66
314 317 3.195396 ACATCACCACAGTTGCAAAGTTT 59.805 39.130 0.00 0.00 0.00 2.66
315 318 3.951775 TCACCACAGTTGCAAAGTTTT 57.048 38.095 0.00 0.00 0.00 2.43
316 319 3.843999 TCACCACAGTTGCAAAGTTTTC 58.156 40.909 0.00 0.00 0.00 2.29
317 320 3.509575 TCACCACAGTTGCAAAGTTTTCT 59.490 39.130 0.00 0.00 0.00 2.52
318 321 3.613737 CACCACAGTTGCAAAGTTTTCTG 59.386 43.478 0.00 5.78 0.00 3.02
319 322 2.604462 CCACAGTTGCAAAGTTTTCTGC 59.396 45.455 0.00 0.00 39.09 4.26
320 323 3.252400 CACAGTTGCAAAGTTTTCTGCA 58.748 40.909 0.00 0.00 46.50 4.41
327 330 5.964887 TGCAAAGTTTTCTGCAACAATAC 57.035 34.783 0.00 0.00 45.25 1.89
328 331 4.808364 TGCAAAGTTTTCTGCAACAATACC 59.192 37.500 0.00 0.00 45.25 2.73
329 332 4.808364 GCAAAGTTTTCTGCAACAATACCA 59.192 37.500 0.00 0.00 38.48 3.25
330 333 5.466393 GCAAAGTTTTCTGCAACAATACCAT 59.534 36.000 0.00 0.00 38.48 3.55
331 334 6.018016 GCAAAGTTTTCTGCAACAATACCATT 60.018 34.615 0.00 0.00 38.48 3.16
332 335 7.346695 CAAAGTTTTCTGCAACAATACCATTG 58.653 34.615 0.00 0.00 0.00 2.82
333 336 6.160576 AGTTTTCTGCAACAATACCATTGT 57.839 33.333 0.00 0.00 0.00 2.71
334 337 6.581712 AGTTTTCTGCAACAATACCATTGTT 58.418 32.000 10.67 10.67 42.75 2.83
345 348 7.707774 ACAATACCATTGTTGCAAAAGTTAC 57.292 32.000 0.00 0.00 0.00 2.50
346 349 7.268586 ACAATACCATTGTTGCAAAAGTTACA 58.731 30.769 0.00 0.00 0.00 2.41
347 350 7.930865 ACAATACCATTGTTGCAAAAGTTACAT 59.069 29.630 0.00 0.00 0.00 2.29
348 351 8.434661 CAATACCATTGTTGCAAAAGTTACATC 58.565 33.333 0.00 0.00 0.00 3.06
349 352 5.911752 ACCATTGTTGCAAAAGTTACATCA 58.088 33.333 0.00 0.00 0.00 3.07
350 353 5.752955 ACCATTGTTGCAAAAGTTACATCAC 59.247 36.000 0.00 0.00 0.00 3.06
351 354 5.752472 CCATTGTTGCAAAAGTTACATCACA 59.248 36.000 0.00 0.00 0.00 3.58
352 355 6.424509 CCATTGTTGCAAAAGTTACATCACAT 59.575 34.615 0.00 0.00 0.00 3.21
353 356 7.359431 CCATTGTTGCAAAAGTTACATCACATC 60.359 37.037 0.00 0.00 0.00 3.06
354 357 6.389830 TGTTGCAAAAGTTACATCACATCT 57.610 33.333 0.00 0.00 0.00 2.90
355 358 6.437928 TGTTGCAAAAGTTACATCACATCTC 58.562 36.000 0.00 0.00 0.00 2.75
356 359 5.627499 TGCAAAAGTTACATCACATCTCC 57.373 39.130 0.00 0.00 0.00 3.71
357 360 4.154015 TGCAAAAGTTACATCACATCTCCG 59.846 41.667 0.00 0.00 0.00 4.63
358 361 4.651994 CAAAAGTTACATCACATCTCCGC 58.348 43.478 0.00 0.00 0.00 5.54
359 362 3.610040 AAGTTACATCACATCTCCGCA 57.390 42.857 0.00 0.00 0.00 5.69
360 363 2.893637 AGTTACATCACATCTCCGCAC 58.106 47.619 0.00 0.00 0.00 5.34
361 364 2.233676 AGTTACATCACATCTCCGCACA 59.766 45.455 0.00 0.00 0.00 4.57
362 365 3.000041 GTTACATCACATCTCCGCACAA 59.000 45.455 0.00 0.00 0.00 3.33
363 366 2.183478 ACATCACATCTCCGCACAAA 57.817 45.000 0.00 0.00 0.00 2.83
364 367 2.079158 ACATCACATCTCCGCACAAAG 58.921 47.619 0.00 0.00 0.00 2.77
365 368 2.079158 CATCACATCTCCGCACAAAGT 58.921 47.619 0.00 0.00 0.00 2.66
366 369 1.795768 TCACATCTCCGCACAAAGTC 58.204 50.000 0.00 0.00 0.00 3.01
367 370 1.344438 TCACATCTCCGCACAAAGTCT 59.656 47.619 0.00 0.00 0.00 3.24
368 371 1.728971 CACATCTCCGCACAAAGTCTC 59.271 52.381 0.00 0.00 0.00 3.36
369 372 1.620819 ACATCTCCGCACAAAGTCTCT 59.379 47.619 0.00 0.00 0.00 3.10
370 373 2.826128 ACATCTCCGCACAAAGTCTCTA 59.174 45.455 0.00 0.00 0.00 2.43
371 374 3.449018 ACATCTCCGCACAAAGTCTCTAT 59.551 43.478 0.00 0.00 0.00 1.98
372 375 4.081420 ACATCTCCGCACAAAGTCTCTATT 60.081 41.667 0.00 0.00 0.00 1.73
373 376 4.537135 TCTCCGCACAAAGTCTCTATTT 57.463 40.909 0.00 0.00 0.00 1.40
374 377 4.495422 TCTCCGCACAAAGTCTCTATTTC 58.505 43.478 0.00 0.00 0.00 2.17
375 378 4.021456 TCTCCGCACAAAGTCTCTATTTCA 60.021 41.667 0.00 0.00 0.00 2.69
376 379 4.245660 TCCGCACAAAGTCTCTATTTCAG 58.754 43.478 0.00 0.00 0.00 3.02
377 380 3.181516 CCGCACAAAGTCTCTATTTCAGC 60.182 47.826 0.00 0.00 0.00 4.26
378 381 3.433274 CGCACAAAGTCTCTATTTCAGCA 59.567 43.478 0.00 0.00 0.00 4.41
379 382 4.083855 CGCACAAAGTCTCTATTTCAGCAA 60.084 41.667 0.00 0.00 0.00 3.91
380 383 5.149977 GCACAAAGTCTCTATTTCAGCAAC 58.850 41.667 0.00 0.00 0.00 4.17
381 384 5.277974 GCACAAAGTCTCTATTTCAGCAACA 60.278 40.000 0.00 0.00 0.00 3.33
382 385 6.728200 CACAAAGTCTCTATTTCAGCAACAA 58.272 36.000 0.00 0.00 0.00 2.83
383 386 6.634436 CACAAAGTCTCTATTTCAGCAACAAC 59.366 38.462 0.00 0.00 0.00 3.32
384 387 5.948992 AAGTCTCTATTTCAGCAACAACC 57.051 39.130 0.00 0.00 0.00 3.77
385 388 4.973168 AGTCTCTATTTCAGCAACAACCA 58.027 39.130 0.00 0.00 0.00 3.67
386 389 5.376625 AGTCTCTATTTCAGCAACAACCAA 58.623 37.500 0.00 0.00 0.00 3.67
387 390 5.239525 AGTCTCTATTTCAGCAACAACCAAC 59.760 40.000 0.00 0.00 0.00 3.77
388 391 5.239525 GTCTCTATTTCAGCAACAACCAACT 59.760 40.000 0.00 0.00 0.00 3.16
389 392 5.827797 TCTCTATTTCAGCAACAACCAACTT 59.172 36.000 0.00 0.00 0.00 2.66
390 393 5.830912 TCTATTTCAGCAACAACCAACTTG 58.169 37.500 0.00 0.00 35.77 3.16
391 394 4.734398 ATTTCAGCAACAACCAACTTGA 57.266 36.364 0.00 0.00 33.59 3.02
392 395 4.734398 TTTCAGCAACAACCAACTTGAT 57.266 36.364 0.00 0.00 33.59 2.57
393 396 3.713858 TCAGCAACAACCAACTTGATG 57.286 42.857 0.00 0.00 36.08 3.07
399 402 5.738118 CAACAACCAACTTGATGCAATTT 57.262 34.783 0.00 0.00 33.59 1.82
400 403 6.121613 CAACAACCAACTTGATGCAATTTT 57.878 33.333 0.00 0.00 33.59 1.82
401 404 5.738118 ACAACCAACTTGATGCAATTTTG 57.262 34.783 0.00 0.00 33.59 2.44
402 405 5.184711 ACAACCAACTTGATGCAATTTTGT 58.815 33.333 0.00 0.00 33.59 2.83
403 406 5.064962 ACAACCAACTTGATGCAATTTTGTG 59.935 36.000 0.00 0.00 33.59 3.33
404 407 5.021033 ACCAACTTGATGCAATTTTGTGA 57.979 34.783 0.00 0.00 0.00 3.58
405 408 5.613329 ACCAACTTGATGCAATTTTGTGAT 58.387 33.333 0.00 0.00 0.00 3.06
406 409 5.467399 ACCAACTTGATGCAATTTTGTGATG 59.533 36.000 0.00 0.00 0.00 3.07
407 410 5.379003 CAACTTGATGCAATTTTGTGATGC 58.621 37.500 0.00 0.00 40.45 3.91
408 411 4.890088 ACTTGATGCAATTTTGTGATGCT 58.110 34.783 0.00 0.00 40.66 3.79
409 412 4.927425 ACTTGATGCAATTTTGTGATGCTC 59.073 37.500 0.00 0.00 40.66 4.26
410 413 3.503891 TGATGCAATTTTGTGATGCTCG 58.496 40.909 0.00 0.00 40.66 5.03
411 414 3.057386 TGATGCAATTTTGTGATGCTCGT 60.057 39.130 0.00 0.00 40.66 4.18
412 415 2.663808 TGCAATTTTGTGATGCTCGTG 58.336 42.857 0.00 0.00 40.66 4.35
413 416 2.034432 TGCAATTTTGTGATGCTCGTGT 59.966 40.909 0.00 0.00 40.66 4.49
414 417 2.406024 GCAATTTTGTGATGCTCGTGTG 59.594 45.455 0.00 0.00 37.12 3.82
415 418 2.981805 CAATTTTGTGATGCTCGTGTGG 59.018 45.455 0.00 0.00 0.00 4.17
416 419 0.950836 TTTTGTGATGCTCGTGTGGG 59.049 50.000 0.00 0.00 0.00 4.61
417 420 0.888736 TTTGTGATGCTCGTGTGGGG 60.889 55.000 0.00 0.00 0.00 4.96
418 421 1.763546 TTGTGATGCTCGTGTGGGGA 61.764 55.000 0.00 0.00 0.00 4.81
419 422 1.448540 GTGATGCTCGTGTGGGGAG 60.449 63.158 0.00 0.00 34.62 4.30
420 423 1.609210 TGATGCTCGTGTGGGGAGA 60.609 57.895 0.00 0.00 33.27 3.71
421 424 0.977627 TGATGCTCGTGTGGGGAGAT 60.978 55.000 0.00 0.00 33.27 2.75
422 425 0.249657 GATGCTCGTGTGGGGAGATC 60.250 60.000 0.00 0.00 33.27 2.75
423 426 0.689080 ATGCTCGTGTGGGGAGATCT 60.689 55.000 0.00 0.00 33.27 2.75
424 427 0.033503 TGCTCGTGTGGGGAGATCTA 60.034 55.000 0.00 0.00 33.27 1.98
425 428 1.112113 GCTCGTGTGGGGAGATCTAA 58.888 55.000 0.00 0.00 33.27 2.10
426 429 1.202428 GCTCGTGTGGGGAGATCTAAC 60.202 57.143 0.00 0.00 33.27 2.34
427 430 2.100197 CTCGTGTGGGGAGATCTAACA 58.900 52.381 0.00 0.00 33.27 2.41
428 431 2.099921 CTCGTGTGGGGAGATCTAACAG 59.900 54.545 0.00 0.00 33.27 3.16
429 432 1.471676 CGTGTGGGGAGATCTAACAGC 60.472 57.143 0.00 0.00 0.00 4.40
430 433 0.824109 TGTGGGGAGATCTAACAGCG 59.176 55.000 0.00 0.00 0.00 5.18
431 434 0.824759 GTGGGGAGATCTAACAGCGT 59.175 55.000 0.00 0.00 0.00 5.07
432 435 0.824109 TGGGGAGATCTAACAGCGTG 59.176 55.000 0.00 0.00 0.00 5.34
433 436 0.105039 GGGGAGATCTAACAGCGTGG 59.895 60.000 0.00 0.00 0.00 4.94
434 437 0.105039 GGGAGATCTAACAGCGTGGG 59.895 60.000 0.00 0.00 0.00 4.61
435 438 1.112113 GGAGATCTAACAGCGTGGGA 58.888 55.000 0.00 0.00 0.00 4.37
436 439 1.067821 GGAGATCTAACAGCGTGGGAG 59.932 57.143 0.00 0.00 0.00 4.30
437 440 1.067821 GAGATCTAACAGCGTGGGAGG 59.932 57.143 0.00 0.00 0.00 4.30
438 441 0.824759 GATCTAACAGCGTGGGAGGT 59.175 55.000 0.00 0.00 0.00 3.85
439 442 0.537188 ATCTAACAGCGTGGGAGGTG 59.463 55.000 0.00 0.00 44.41 4.00
440 443 1.079127 CTAACAGCGTGGGAGGTGG 60.079 63.158 1.34 0.00 43.27 4.61
441 444 2.521958 CTAACAGCGTGGGAGGTGGG 62.522 65.000 1.34 0.00 43.27 4.61
446 449 3.953775 CGTGGGAGGTGGGCTTGT 61.954 66.667 0.00 0.00 0.00 3.16
447 450 2.520968 GTGGGAGGTGGGCTTGTT 59.479 61.111 0.00 0.00 0.00 2.83
448 451 1.152546 GTGGGAGGTGGGCTTGTTT 60.153 57.895 0.00 0.00 0.00 2.83
449 452 1.152830 TGGGAGGTGGGCTTGTTTC 59.847 57.895 0.00 0.00 0.00 2.78
450 453 1.360393 TGGGAGGTGGGCTTGTTTCT 61.360 55.000 0.00 0.00 0.00 2.52
451 454 0.895559 GGGAGGTGGGCTTGTTTCTG 60.896 60.000 0.00 0.00 0.00 3.02
452 455 1.527433 GGAGGTGGGCTTGTTTCTGC 61.527 60.000 0.00 0.00 0.00 4.26
453 456 0.823356 GAGGTGGGCTTGTTTCTGCA 60.823 55.000 0.00 0.00 0.00 4.41
454 457 0.396974 AGGTGGGCTTGTTTCTGCAA 60.397 50.000 0.00 0.00 0.00 4.08
455 458 0.249447 GGTGGGCTTGTTTCTGCAAC 60.249 55.000 0.00 0.00 35.71 4.17
456 459 0.459489 GTGGGCTTGTTTCTGCAACA 59.541 50.000 0.00 0.00 44.11 3.33
457 460 0.459489 TGGGCTTGTTTCTGCAACAC 59.541 50.000 0.00 0.00 45.54 3.32
458 461 0.249447 GGGCTTGTTTCTGCAACACC 60.249 55.000 0.00 0.00 45.54 4.16
459 462 0.594796 GGCTTGTTTCTGCAACACCG 60.595 55.000 0.00 0.00 45.54 4.94
460 463 1.208642 GCTTGTTTCTGCAACACCGC 61.209 55.000 0.00 0.00 45.54 5.68
461 464 0.929824 CTTGTTTCTGCAACACCGCG 60.930 55.000 0.00 0.00 45.54 6.46
462 465 2.725815 GTTTCTGCAACACCGCGC 60.726 61.111 0.00 0.00 35.18 6.86
463 466 2.899838 TTTCTGCAACACCGCGCT 60.900 55.556 5.56 0.00 33.35 5.92
464 467 2.477176 TTTCTGCAACACCGCGCTT 61.477 52.632 5.56 0.00 33.35 4.68
465 468 2.660553 TTTCTGCAACACCGCGCTTG 62.661 55.000 5.56 4.01 33.35 4.01
466 469 3.952675 CTGCAACACCGCGCTTGT 61.953 61.111 5.56 5.67 33.35 3.16
467 470 3.468266 CTGCAACACCGCGCTTGTT 62.468 57.895 16.13 16.13 37.69 2.83
469 472 3.024043 CAACACCGCGCTTGTTGC 61.024 61.111 28.09 0.00 45.36 4.17
470 473 3.513438 AACACCGCGCTTGTTGCA 61.513 55.556 19.85 0.00 43.06 4.08
471 474 3.057547 AACACCGCGCTTGTTGCAA 62.058 52.632 19.85 0.00 43.06 4.08
472 475 2.278466 CACCGCGCTTGTTGCAAA 60.278 55.556 5.56 0.00 43.06 3.68
473 476 1.875813 CACCGCGCTTGTTGCAAAA 60.876 52.632 5.56 0.00 43.06 2.44
474 477 1.588667 ACCGCGCTTGTTGCAAAAG 60.589 52.632 5.56 8.72 43.06 2.27
475 478 2.302230 CCGCGCTTGTTGCAAAAGG 61.302 57.895 5.56 8.56 43.06 3.11
476 479 2.302230 CGCGCTTGTTGCAAAAGGG 61.302 57.895 22.36 22.36 43.06 3.95
477 480 1.067250 GCGCTTGTTGCAAAAGGGA 59.933 52.632 26.88 1.98 43.06 4.20
478 481 0.940991 GCGCTTGTTGCAAAAGGGAG 60.941 55.000 26.88 11.01 43.06 4.30
479 482 0.318955 CGCTTGTTGCAAAAGGGAGG 60.319 55.000 22.28 5.12 43.06 4.30
480 483 0.752658 GCTTGTTGCAAAAGGGAGGT 59.247 50.000 17.37 0.00 42.31 3.85
481 484 1.538849 GCTTGTTGCAAAAGGGAGGTG 60.539 52.381 17.37 0.00 42.31 4.00
482 485 1.069049 CTTGTTGCAAAAGGGAGGTGG 59.931 52.381 0.00 0.00 0.00 4.61
483 486 0.758685 TGTTGCAAAAGGGAGGTGGG 60.759 55.000 0.00 0.00 0.00 4.61
484 487 1.152355 TTGCAAAAGGGAGGTGGGG 60.152 57.895 0.00 0.00 0.00 4.96
485 488 1.660019 TTGCAAAAGGGAGGTGGGGA 61.660 55.000 0.00 0.00 0.00 4.81
486 489 1.155155 GCAAAAGGGAGGTGGGGAA 59.845 57.895 0.00 0.00 0.00 3.97
487 490 1.185618 GCAAAAGGGAGGTGGGGAAC 61.186 60.000 0.00 0.00 0.00 3.62
488 491 0.893727 CAAAAGGGAGGTGGGGAACG 60.894 60.000 0.00 0.00 0.00 3.95
489 492 1.358051 AAAAGGGAGGTGGGGAACGT 61.358 55.000 0.00 0.00 0.00 3.99
490 493 2.064242 AAAGGGAGGTGGGGAACGTG 62.064 60.000 0.00 0.00 0.00 4.49
491 494 4.029809 GGGAGGTGGGGAACGTGG 62.030 72.222 0.00 0.00 0.00 4.94
492 495 4.029809 GGAGGTGGGGAACGTGGG 62.030 72.222 0.00 0.00 0.00 4.61
493 496 3.246880 GAGGTGGGGAACGTGGGT 61.247 66.667 0.00 0.00 0.00 4.51
494 497 2.775219 AGGTGGGGAACGTGGGTT 60.775 61.111 0.00 0.00 39.63 4.11
495 498 2.596338 GGTGGGGAACGTGGGTTG 60.596 66.667 0.00 0.00 36.24 3.77
496 499 2.193786 GTGGGGAACGTGGGTTGT 59.806 61.111 0.00 0.00 36.24 3.32
497 500 1.451072 GTGGGGAACGTGGGTTGTA 59.549 57.895 0.00 0.00 36.24 2.41
498 501 0.886043 GTGGGGAACGTGGGTTGTAC 60.886 60.000 0.00 0.00 36.24 2.90
499 502 1.343431 TGGGGAACGTGGGTTGTACA 61.343 55.000 0.00 0.00 36.24 2.90
500 503 0.037160 GGGGAACGTGGGTTGTACAT 59.963 55.000 0.00 0.00 36.24 2.29
501 504 1.546099 GGGGAACGTGGGTTGTACATT 60.546 52.381 0.00 0.00 36.24 2.71
502 505 1.538075 GGGAACGTGGGTTGTACATTG 59.462 52.381 0.00 0.00 36.24 2.82
503 506 1.538075 GGAACGTGGGTTGTACATTGG 59.462 52.381 0.00 0.00 36.24 3.16
504 507 2.496111 GAACGTGGGTTGTACATTGGA 58.504 47.619 0.00 0.00 36.24 3.53
505 508 1.886886 ACGTGGGTTGTACATTGGAC 58.113 50.000 0.00 0.00 0.00 4.02
506 509 0.793861 CGTGGGTTGTACATTGGACG 59.206 55.000 0.00 0.00 0.00 4.79
507 510 1.161843 GTGGGTTGTACATTGGACGG 58.838 55.000 0.00 0.00 0.00 4.79
508 511 0.606944 TGGGTTGTACATTGGACGGC 60.607 55.000 0.00 0.00 0.00 5.68
509 512 1.310216 GGGTTGTACATTGGACGGCC 61.310 60.000 0.00 0.00 0.00 6.13
510 513 0.606944 GGTTGTACATTGGACGGCCA 60.607 55.000 5.41 5.41 44.17 5.36
511 514 0.802494 GTTGTACATTGGACGGCCAG 59.198 55.000 11.51 1.32 46.91 4.85
512 515 0.958382 TTGTACATTGGACGGCCAGC 60.958 55.000 11.51 0.03 46.91 4.85
513 516 1.376683 GTACATTGGACGGCCAGCA 60.377 57.895 11.51 0.00 46.91 4.41
514 517 1.078497 TACATTGGACGGCCAGCAG 60.078 57.895 11.51 7.19 46.91 4.24
515 518 3.818787 CATTGGACGGCCAGCAGC 61.819 66.667 11.51 0.00 46.91 5.25
527 530 4.393155 AGCAGCGCGTCCATCCAA 62.393 61.111 8.43 0.00 0.00 3.53
528 531 4.166011 GCAGCGCGTCCATCCAAC 62.166 66.667 8.43 0.00 0.00 3.77
529 532 3.853330 CAGCGCGTCCATCCAACG 61.853 66.667 8.43 0.00 42.87 4.10
534 537 2.819595 CGTCCATCCAACGGCCAG 60.820 66.667 2.24 0.00 36.51 4.85
535 538 3.134127 GTCCATCCAACGGCCAGC 61.134 66.667 2.24 0.00 0.00 4.85
536 539 4.424711 TCCATCCAACGGCCAGCC 62.425 66.667 2.24 0.00 0.00 4.85
537 540 4.738998 CCATCCAACGGCCAGCCA 62.739 66.667 9.78 0.00 35.37 4.75
538 541 3.136123 CATCCAACGGCCAGCCAG 61.136 66.667 9.78 4.30 35.37 4.85
539 542 4.431131 ATCCAACGGCCAGCCAGG 62.431 66.667 9.78 7.43 41.84 4.45
552 555 3.508840 CCAGGCGGCGGATGTTTC 61.509 66.667 11.43 0.00 0.00 2.78
553 556 3.508840 CAGGCGGCGGATGTTTCC 61.509 66.667 9.78 0.00 38.81 3.13
554 557 4.028490 AGGCGGCGGATGTTTCCA 62.028 61.111 9.78 0.00 42.74 3.53
555 558 3.059386 GGCGGCGGATGTTTCCAA 61.059 61.111 9.78 0.00 42.74 3.53
556 559 2.414785 GGCGGCGGATGTTTCCAAT 61.415 57.895 9.78 0.00 42.74 3.16
557 560 1.510844 GCGGCGGATGTTTCCAATT 59.489 52.632 9.78 0.00 42.74 2.32
558 561 0.525455 GCGGCGGATGTTTCCAATTC 60.525 55.000 9.78 0.00 42.74 2.17
559 562 0.808125 CGGCGGATGTTTCCAATTCA 59.192 50.000 0.00 0.00 42.74 2.57
560 563 1.405105 CGGCGGATGTTTCCAATTCAT 59.595 47.619 0.00 0.00 42.74 2.57
561 564 2.541588 CGGCGGATGTTTCCAATTCATC 60.542 50.000 0.00 0.00 42.74 2.92
566 569 4.032703 GATGTTTCCAATTCATCCACCG 57.967 45.455 0.00 0.00 33.92 4.94
567 570 2.166829 TGTTTCCAATTCATCCACCGG 58.833 47.619 0.00 0.00 0.00 5.28
568 571 1.135112 GTTTCCAATTCATCCACCGGC 60.135 52.381 0.00 0.00 0.00 6.13
569 572 1.029408 TTCCAATTCATCCACCGGCG 61.029 55.000 0.00 0.00 0.00 6.46
570 573 2.480610 CCAATTCATCCACCGGCGG 61.481 63.158 27.06 27.06 0.00 6.13
571 574 1.451207 CAATTCATCCACCGGCGGA 60.451 57.895 35.78 14.91 40.07 5.54
572 575 1.451387 AATTCATCCACCGGCGGAC 60.451 57.895 35.78 0.00 38.07 4.79
573 576 3.733344 ATTCATCCACCGGCGGACG 62.733 63.158 35.78 22.44 38.07 4.79
586 589 4.228567 GGACGCCTAGCAGCCCTC 62.229 72.222 0.00 0.00 0.00 4.30
587 590 4.577246 GACGCCTAGCAGCCCTCG 62.577 72.222 0.00 0.00 0.00 4.63
589 592 4.277593 CGCCTAGCAGCCCTCGAG 62.278 72.222 5.13 5.13 0.00 4.04
590 593 2.835431 GCCTAGCAGCCCTCGAGA 60.835 66.667 15.71 0.00 0.00 4.04
591 594 2.427245 GCCTAGCAGCCCTCGAGAA 61.427 63.158 15.71 0.00 0.00 2.87
592 595 1.961180 GCCTAGCAGCCCTCGAGAAA 61.961 60.000 15.71 0.00 0.00 2.52
593 596 0.179097 CCTAGCAGCCCTCGAGAAAC 60.179 60.000 15.71 2.32 0.00 2.78
594 597 0.532573 CTAGCAGCCCTCGAGAAACA 59.467 55.000 15.71 0.00 0.00 2.83
595 598 0.973632 TAGCAGCCCTCGAGAAACAA 59.026 50.000 15.71 0.00 0.00 2.83
596 599 0.326264 AGCAGCCCTCGAGAAACAAT 59.674 50.000 15.71 0.00 0.00 2.71
597 600 0.449388 GCAGCCCTCGAGAAACAATG 59.551 55.000 15.71 4.94 0.00 2.82
598 601 1.089920 CAGCCCTCGAGAAACAATGG 58.910 55.000 15.71 5.57 0.00 3.16
599 602 0.035056 AGCCCTCGAGAAACAATGGG 60.035 55.000 15.71 5.80 37.76 4.00
600 603 0.322546 GCCCTCGAGAAACAATGGGT 60.323 55.000 15.71 0.00 37.09 4.51
601 604 1.739067 CCCTCGAGAAACAATGGGTC 58.261 55.000 15.71 0.00 0.00 4.46
602 605 1.359848 CCTCGAGAAACAATGGGTCG 58.640 55.000 15.71 0.00 0.00 4.79
603 606 0.721718 CTCGAGAAACAATGGGTCGC 59.278 55.000 6.58 0.00 0.00 5.19
604 607 0.034198 TCGAGAAACAATGGGTCGCA 59.966 50.000 0.00 0.00 0.00 5.10
605 608 0.871722 CGAGAAACAATGGGTCGCAA 59.128 50.000 0.00 0.00 0.00 4.85
606 609 1.135972 CGAGAAACAATGGGTCGCAAG 60.136 52.381 0.00 0.00 0.00 4.01
607 610 1.880027 GAGAAACAATGGGTCGCAAGT 59.120 47.619 0.00 0.00 39.48 3.16
608 611 1.608590 AGAAACAATGGGTCGCAAGTG 59.391 47.619 0.00 0.00 39.48 3.16
609 612 1.606668 GAAACAATGGGTCGCAAGTGA 59.393 47.619 9.95 0.00 39.48 3.41
610 613 1.686355 AACAATGGGTCGCAAGTGAA 58.314 45.000 9.95 0.00 39.48 3.18
611 614 1.686355 ACAATGGGTCGCAAGTGAAA 58.314 45.000 9.95 0.00 39.48 2.69
612 615 2.238521 ACAATGGGTCGCAAGTGAAAT 58.761 42.857 9.95 0.00 39.48 2.17
613 616 2.228822 ACAATGGGTCGCAAGTGAAATC 59.771 45.455 9.95 0.00 39.48 2.17
614 617 2.198827 ATGGGTCGCAAGTGAAATCA 57.801 45.000 0.00 0.00 39.48 2.57
615 618 2.198827 TGGGTCGCAAGTGAAATCAT 57.801 45.000 0.00 0.00 39.48 2.45
616 619 1.811965 TGGGTCGCAAGTGAAATCATG 59.188 47.619 0.00 0.00 39.48 3.07
617 620 2.083774 GGGTCGCAAGTGAAATCATGA 58.916 47.619 0.00 0.00 39.48 3.07
618 621 2.487762 GGGTCGCAAGTGAAATCATGAA 59.512 45.455 0.00 0.00 39.48 2.57
619 622 3.492313 GGTCGCAAGTGAAATCATGAAC 58.508 45.455 0.00 0.00 39.48 3.18
620 623 3.189287 GGTCGCAAGTGAAATCATGAACT 59.811 43.478 0.00 0.00 39.48 3.01
621 624 4.320494 GGTCGCAAGTGAAATCATGAACTT 60.320 41.667 0.00 1.65 39.48 2.66
622 625 5.106712 GGTCGCAAGTGAAATCATGAACTTA 60.107 40.000 9.60 0.00 39.48 2.24
623 626 6.017933 GTCGCAAGTGAAATCATGAACTTAG 58.982 40.000 9.60 7.79 39.48 2.18
624 627 5.700832 TCGCAAGTGAAATCATGAACTTAGT 59.299 36.000 9.60 0.00 39.48 2.24
625 628 6.017933 CGCAAGTGAAATCATGAACTTAGTC 58.982 40.000 9.60 3.38 31.80 2.59
626 629 6.347644 CGCAAGTGAAATCATGAACTTAGTCA 60.348 38.462 9.60 1.02 31.80 3.41
627 630 7.533426 GCAAGTGAAATCATGAACTTAGTCAT 58.467 34.615 9.60 0.00 38.84 3.06
628 631 8.668353 GCAAGTGAAATCATGAACTTAGTCATA 58.332 33.333 9.60 0.00 36.04 2.15
629 632 9.979270 CAAGTGAAATCATGAACTTAGTCATAC 57.021 33.333 9.60 0.00 36.04 2.39
630 633 9.725019 AAGTGAAATCATGAACTTAGTCATACA 57.275 29.630 8.44 0.00 36.04 2.29
631 634 9.725019 AGTGAAATCATGAACTTAGTCATACAA 57.275 29.630 0.00 0.00 36.04 2.41
634 637 9.478019 GAAATCATGAACTTAGTCATACAAACG 57.522 33.333 0.00 0.00 36.04 3.60
635 638 8.771920 AATCATGAACTTAGTCATACAAACGA 57.228 30.769 0.00 0.00 36.04 3.85
636 639 7.576750 TCATGAACTTAGTCATACAAACGAC 57.423 36.000 0.00 0.00 36.04 4.34
637 640 6.588756 TCATGAACTTAGTCATACAAACGACC 59.411 38.462 0.00 0.00 36.04 4.79
638 641 5.232463 TGAACTTAGTCATACAAACGACCC 58.768 41.667 0.00 0.00 32.33 4.46
639 642 3.841643 ACTTAGTCATACAAACGACCCG 58.158 45.455 0.00 0.00 32.33 5.28
640 643 2.945447 TAGTCATACAAACGACCCGG 57.055 50.000 0.00 0.00 32.33 5.73
641 644 0.971386 AGTCATACAAACGACCCGGT 59.029 50.000 0.00 0.00 32.33 5.28
642 645 2.170166 AGTCATACAAACGACCCGGTA 58.830 47.619 0.00 0.00 32.33 4.02
643 646 2.094545 AGTCATACAAACGACCCGGTAC 60.095 50.000 0.00 0.00 32.33 3.34
644 647 1.891811 TCATACAAACGACCCGGTACA 59.108 47.619 0.00 0.00 0.00 2.90
645 648 1.994779 CATACAAACGACCCGGTACAC 59.005 52.381 0.00 0.00 0.00 2.90
646 649 1.035923 TACAAACGACCCGGTACACA 58.964 50.000 0.00 0.00 0.00 3.72
647 650 0.530431 ACAAACGACCCGGTACACAC 60.530 55.000 0.00 0.00 0.00 3.82
648 651 0.530211 CAAACGACCCGGTACACACA 60.530 55.000 0.00 0.00 0.00 3.72
649 652 0.530431 AAACGACCCGGTACACACAC 60.530 55.000 0.00 0.00 0.00 3.82
650 653 1.674764 AACGACCCGGTACACACACA 61.675 55.000 0.00 0.00 0.00 3.72
651 654 1.067749 CGACCCGGTACACACACAA 59.932 57.895 0.00 0.00 0.00 3.33
652 655 0.530211 CGACCCGGTACACACACAAA 60.530 55.000 0.00 0.00 0.00 2.83
653 656 1.223187 GACCCGGTACACACACAAAG 58.777 55.000 0.00 0.00 0.00 2.77
654 657 0.179040 ACCCGGTACACACACAAAGG 60.179 55.000 0.00 0.00 0.00 3.11
655 658 0.179040 CCCGGTACACACACAAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
656 659 1.070445 CCCGGTACACACACAAAGGTA 59.930 52.381 0.00 0.00 0.00 3.08
657 660 2.485124 CCCGGTACACACACAAAGGTAA 60.485 50.000 0.00 0.00 0.00 2.85
658 661 3.204526 CCGGTACACACACAAAGGTAAA 58.795 45.455 0.00 0.00 0.00 2.01
659 662 3.816523 CCGGTACACACACAAAGGTAAAT 59.183 43.478 0.00 0.00 0.00 1.40
831 834 1.070758 GTCTCCTTGCTGACTGGACAA 59.929 52.381 0.00 0.00 0.00 3.18
887 931 2.257409 ATTGCAATCCGCTCCCTCGT 62.257 55.000 5.99 0.00 43.06 4.18
1219 1385 2.766263 CTGGTAACTAGATCTGTGCCCA 59.234 50.000 5.18 9.83 37.61 5.36
1226 1392 0.110486 AGATCTGTGCCCACCGTTTT 59.890 50.000 0.00 0.00 0.00 2.43
1250 1416 0.027455 TGTTGTTTCGTTGAGCAGCG 59.973 50.000 0.08 0.08 36.35 5.18
1344 1517 1.848388 TCAAGTGGCATGATGATCCCT 59.152 47.619 0.00 0.00 0.00 4.20
1437 1610 3.902881 AGCTCAAGACCGAGAAATCAT 57.097 42.857 0.00 0.00 34.79 2.45
1551 1724 4.347583 TGGATGTTCTTGCCAAGGAATTTT 59.652 37.500 4.30 0.00 0.00 1.82
1565 1738 7.388776 GCCAAGGAATTTTAGAGAAGCAAAAAT 59.611 33.333 0.00 0.00 35.01 1.82
1862 2928 2.270874 ATCCACTCGCCATTCCCCAC 62.271 60.000 0.00 0.00 0.00 4.61
1899 2968 2.681778 CTCTCGCCCACCCACTCT 60.682 66.667 0.00 0.00 0.00 3.24
1911 2980 0.820226 CCCACTCTCATCGCTTCTCA 59.180 55.000 0.00 0.00 0.00 3.27
1971 3043 4.717629 CGCCGTGCTCAAGACCGA 62.718 66.667 0.00 0.00 0.00 4.69
2014 3086 0.106819 CTGCAAGGGGGATTCAGAGG 60.107 60.000 0.00 0.00 0.00 3.69
2039 3111 1.621992 GCCGATGTGGAGGAGATCTA 58.378 55.000 0.00 0.00 42.00 1.98
2061 3133 3.825014 ACAACAGATTTCTGAGCTTGCAT 59.175 39.130 14.29 0.00 46.59 3.96
2367 3440 0.252421 AGATGTGGAGGAGGACAGCA 60.252 55.000 0.00 0.00 30.75 4.41
2406 6365 4.079850 ACAGCGAGCAGGAGCAGG 62.080 66.667 0.00 0.00 45.49 4.85
2407 6366 4.079850 CAGCGAGCAGGAGCAGGT 62.080 66.667 0.00 0.00 45.49 4.00
2408 6367 4.079850 AGCGAGCAGGAGCAGGTG 62.080 66.667 0.00 0.00 45.49 4.00
2410 6369 3.699894 CGAGCAGGAGCAGGTGGT 61.700 66.667 0.00 0.00 45.49 4.16
2411 6370 2.046507 GAGCAGGAGCAGGTGGTG 60.047 66.667 0.00 0.00 45.49 4.17
2462 6457 0.549902 TGGTGGTGGATGTGGAGGAT 60.550 55.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 247 6.618287 TTTGTAAGAGAGATTGTGTTGTGG 57.382 37.500 0.00 0.00 0.00 4.17
284 287 3.883830 ACTGTGGTGATGTTGCAAAAA 57.116 38.095 0.00 0.00 0.00 1.94
285 288 3.519579 CAACTGTGGTGATGTTGCAAAA 58.480 40.909 0.00 0.00 35.39 2.44
286 289 3.162202 CAACTGTGGTGATGTTGCAAA 57.838 42.857 0.00 0.00 35.39 3.68
287 290 2.867287 CAACTGTGGTGATGTTGCAA 57.133 45.000 0.00 0.00 35.39 4.08
290 293 2.867287 TTGCAACTGTGGTGATGTTG 57.133 45.000 0.00 0.00 42.55 3.33
291 294 2.760092 ACTTTGCAACTGTGGTGATGTT 59.240 40.909 0.00 0.00 0.00 2.71
292 295 2.378038 ACTTTGCAACTGTGGTGATGT 58.622 42.857 0.00 0.00 0.00 3.06
293 296 3.441496 AACTTTGCAACTGTGGTGATG 57.559 42.857 0.00 0.00 0.00 3.07
294 297 4.160252 AGAAAACTTTGCAACTGTGGTGAT 59.840 37.500 0.00 0.00 0.00 3.06
295 298 3.509575 AGAAAACTTTGCAACTGTGGTGA 59.490 39.130 0.00 0.00 0.00 4.02
296 299 3.613737 CAGAAAACTTTGCAACTGTGGTG 59.386 43.478 0.00 0.00 0.00 4.17
297 300 3.848726 CAGAAAACTTTGCAACTGTGGT 58.151 40.909 0.00 0.00 0.00 4.16
298 301 2.604462 GCAGAAAACTTTGCAACTGTGG 59.396 45.455 0.00 0.00 40.02 4.17
299 302 3.252400 TGCAGAAAACTTTGCAACTGTG 58.748 40.909 0.00 0.00 46.42 3.66
300 303 3.591196 TGCAGAAAACTTTGCAACTGT 57.409 38.095 0.00 0.00 46.42 3.55
306 309 4.808364 TGGTATTGTTGCAGAAAACTTTGC 59.192 37.500 0.00 0.00 40.67 3.68
307 310 7.011295 ACAATGGTATTGTTGCAGAAAACTTTG 59.989 33.333 1.55 0.00 0.00 2.77
308 311 7.047271 ACAATGGTATTGTTGCAGAAAACTTT 58.953 30.769 1.55 0.00 0.00 2.66
309 312 6.581712 ACAATGGTATTGTTGCAGAAAACTT 58.418 32.000 1.55 0.00 0.00 2.66
310 313 6.160576 ACAATGGTATTGTTGCAGAAAACT 57.839 33.333 1.55 0.00 0.00 2.66
311 314 6.843069 AACAATGGTATTGTTGCAGAAAAC 57.157 33.333 16.54 0.00 40.70 2.43
320 323 7.766278 TGTAACTTTTGCAACAATGGTATTGTT 59.234 29.630 12.70 12.70 42.75 2.83
321 324 7.268586 TGTAACTTTTGCAACAATGGTATTGT 58.731 30.769 0.00 1.55 0.00 2.71
322 325 7.706281 TGTAACTTTTGCAACAATGGTATTG 57.294 32.000 0.00 0.28 0.00 1.90
323 326 8.147058 TGATGTAACTTTTGCAACAATGGTATT 58.853 29.630 0.00 0.00 0.00 1.89
324 327 7.598493 GTGATGTAACTTTTGCAACAATGGTAT 59.402 33.333 0.00 0.00 30.76 2.73
325 328 6.920758 GTGATGTAACTTTTGCAACAATGGTA 59.079 34.615 0.00 0.00 30.76 3.25
326 329 5.752955 GTGATGTAACTTTTGCAACAATGGT 59.247 36.000 0.00 0.00 30.76 3.55
327 330 5.752472 TGTGATGTAACTTTTGCAACAATGG 59.248 36.000 0.00 0.00 30.76 3.16
328 331 6.825284 TGTGATGTAACTTTTGCAACAATG 57.175 33.333 0.00 0.00 30.76 2.82
329 332 7.436118 AGATGTGATGTAACTTTTGCAACAAT 58.564 30.769 0.00 0.00 30.76 2.71
330 333 6.804677 AGATGTGATGTAACTTTTGCAACAA 58.195 32.000 0.00 0.00 30.76 2.83
331 334 6.389830 AGATGTGATGTAACTTTTGCAACA 57.610 33.333 0.00 0.00 0.00 3.33
332 335 5.858581 GGAGATGTGATGTAACTTTTGCAAC 59.141 40.000 0.00 0.00 0.00 4.17
333 336 5.334802 CGGAGATGTGATGTAACTTTTGCAA 60.335 40.000 0.00 0.00 0.00 4.08
334 337 4.154015 CGGAGATGTGATGTAACTTTTGCA 59.846 41.667 0.00 0.00 0.00 4.08
335 338 4.651994 CGGAGATGTGATGTAACTTTTGC 58.348 43.478 0.00 0.00 0.00 3.68
336 339 4.154015 TGCGGAGATGTGATGTAACTTTTG 59.846 41.667 0.00 0.00 0.00 2.44
337 340 4.154195 GTGCGGAGATGTGATGTAACTTTT 59.846 41.667 0.00 0.00 0.00 2.27
338 341 3.684788 GTGCGGAGATGTGATGTAACTTT 59.315 43.478 0.00 0.00 0.00 2.66
339 342 3.262420 GTGCGGAGATGTGATGTAACTT 58.738 45.455 0.00 0.00 0.00 2.66
340 343 2.233676 TGTGCGGAGATGTGATGTAACT 59.766 45.455 0.00 0.00 0.00 2.24
341 344 2.616960 TGTGCGGAGATGTGATGTAAC 58.383 47.619 0.00 0.00 0.00 2.50
342 345 3.326836 TTGTGCGGAGATGTGATGTAA 57.673 42.857 0.00 0.00 0.00 2.41
343 346 3.261580 CTTTGTGCGGAGATGTGATGTA 58.738 45.455 0.00 0.00 0.00 2.29
344 347 2.079158 CTTTGTGCGGAGATGTGATGT 58.921 47.619 0.00 0.00 0.00 3.06
345 348 2.079158 ACTTTGTGCGGAGATGTGATG 58.921 47.619 0.00 0.00 0.00 3.07
346 349 2.027745 AGACTTTGTGCGGAGATGTGAT 60.028 45.455 0.00 0.00 0.00 3.06
347 350 1.344438 AGACTTTGTGCGGAGATGTGA 59.656 47.619 0.00 0.00 0.00 3.58
348 351 1.728971 GAGACTTTGTGCGGAGATGTG 59.271 52.381 0.00 0.00 0.00 3.21
349 352 1.620819 AGAGACTTTGTGCGGAGATGT 59.379 47.619 0.00 0.00 0.00 3.06
350 353 2.376808 AGAGACTTTGTGCGGAGATG 57.623 50.000 0.00 0.00 0.00 2.90
351 354 4.744795 AATAGAGACTTTGTGCGGAGAT 57.255 40.909 0.00 0.00 0.00 2.75
352 355 4.021456 TGAAATAGAGACTTTGTGCGGAGA 60.021 41.667 0.00 0.00 0.00 3.71
353 356 4.245660 TGAAATAGAGACTTTGTGCGGAG 58.754 43.478 0.00 0.00 0.00 4.63
354 357 4.245660 CTGAAATAGAGACTTTGTGCGGA 58.754 43.478 0.00 0.00 0.00 5.54
355 358 3.181516 GCTGAAATAGAGACTTTGTGCGG 60.182 47.826 0.00 0.00 0.00 5.69
356 359 3.433274 TGCTGAAATAGAGACTTTGTGCG 59.567 43.478 0.00 0.00 0.00 5.34
357 360 5.149977 GTTGCTGAAATAGAGACTTTGTGC 58.850 41.667 0.00 0.00 0.00 4.57
358 361 6.304356 TGTTGCTGAAATAGAGACTTTGTG 57.696 37.500 0.00 0.00 0.00 3.33
359 362 6.238759 GGTTGTTGCTGAAATAGAGACTTTGT 60.239 38.462 0.00 0.00 0.00 2.83
360 363 6.145535 GGTTGTTGCTGAAATAGAGACTTTG 58.854 40.000 0.00 0.00 0.00 2.77
361 364 5.827797 TGGTTGTTGCTGAAATAGAGACTTT 59.172 36.000 0.00 0.00 0.00 2.66
362 365 5.376625 TGGTTGTTGCTGAAATAGAGACTT 58.623 37.500 0.00 0.00 0.00 3.01
363 366 4.973168 TGGTTGTTGCTGAAATAGAGACT 58.027 39.130 0.00 0.00 0.00 3.24
364 367 5.239525 AGTTGGTTGTTGCTGAAATAGAGAC 59.760 40.000 0.00 0.00 0.00 3.36
365 368 5.376625 AGTTGGTTGTTGCTGAAATAGAGA 58.623 37.500 0.00 0.00 0.00 3.10
366 369 5.695851 AGTTGGTTGTTGCTGAAATAGAG 57.304 39.130 0.00 0.00 0.00 2.43
367 370 5.592282 TCAAGTTGGTTGTTGCTGAAATAGA 59.408 36.000 2.34 0.00 37.43 1.98
368 371 5.830912 TCAAGTTGGTTGTTGCTGAAATAG 58.169 37.500 2.34 0.00 37.43 1.73
369 372 5.843673 TCAAGTTGGTTGTTGCTGAAATA 57.156 34.783 2.34 0.00 37.43 1.40
370 373 4.734398 TCAAGTTGGTTGTTGCTGAAAT 57.266 36.364 2.34 0.00 37.43 2.17
371 374 4.431809 CATCAAGTTGGTTGTTGCTGAAA 58.568 39.130 2.34 0.00 37.43 2.69
372 375 4.044336 CATCAAGTTGGTTGTTGCTGAA 57.956 40.909 2.34 0.00 37.43 3.02
373 376 3.713858 CATCAAGTTGGTTGTTGCTGA 57.286 42.857 2.34 0.00 37.43 4.26
377 380 5.738118 AAATTGCATCAAGTTGGTTGTTG 57.262 34.783 2.34 0.00 38.44 3.33
378 381 5.647225 ACAAAATTGCATCAAGTTGGTTGTT 59.353 32.000 2.34 0.00 32.69 2.83
379 382 5.064962 CACAAAATTGCATCAAGTTGGTTGT 59.935 36.000 2.34 0.00 34.06 3.32
380 383 5.293814 TCACAAAATTGCATCAAGTTGGTTG 59.706 36.000 2.34 2.88 34.06 3.77
381 384 5.426504 TCACAAAATTGCATCAAGTTGGTT 58.573 33.333 2.34 0.00 34.06 3.67
382 385 5.021033 TCACAAAATTGCATCAAGTTGGT 57.979 34.783 2.34 0.00 36.24 3.67
383 386 5.615984 GCATCACAAAATTGCATCAAGTTGG 60.616 40.000 2.34 2.87 32.02 3.77
384 387 5.178623 AGCATCACAAAATTGCATCAAGTTG 59.821 36.000 0.00 0.00 38.84 3.16
385 388 5.302360 AGCATCACAAAATTGCATCAAGTT 58.698 33.333 0.00 0.00 38.84 2.66
386 389 4.890088 AGCATCACAAAATTGCATCAAGT 58.110 34.783 0.00 0.00 38.84 3.16
387 390 4.031314 CGAGCATCACAAAATTGCATCAAG 59.969 41.667 0.00 0.00 38.84 3.02
388 391 3.921630 CGAGCATCACAAAATTGCATCAA 59.078 39.130 0.00 0.00 38.84 2.57
389 392 3.057386 ACGAGCATCACAAAATTGCATCA 60.057 39.130 0.00 0.00 38.84 3.07
390 393 3.302434 CACGAGCATCACAAAATTGCATC 59.698 43.478 0.00 0.00 38.84 3.91
391 394 3.247442 CACGAGCATCACAAAATTGCAT 58.753 40.909 0.00 0.00 38.84 3.96
392 395 2.034432 ACACGAGCATCACAAAATTGCA 59.966 40.909 0.00 0.00 38.84 4.08
393 396 2.406024 CACACGAGCATCACAAAATTGC 59.594 45.455 0.00 0.00 36.63 3.56
394 397 2.981805 CCACACGAGCATCACAAAATTG 59.018 45.455 0.00 0.00 33.17 2.32
395 398 2.030007 CCCACACGAGCATCACAAAATT 60.030 45.455 0.00 0.00 33.17 1.82
396 399 1.541147 CCCACACGAGCATCACAAAAT 59.459 47.619 0.00 0.00 33.17 1.82
397 400 0.950836 CCCACACGAGCATCACAAAA 59.049 50.000 0.00 0.00 33.17 2.44
398 401 0.888736 CCCCACACGAGCATCACAAA 60.889 55.000 0.00 0.00 33.17 2.83
399 402 1.302431 CCCCACACGAGCATCACAA 60.302 57.895 0.00 0.00 33.17 3.33
400 403 2.171209 CTCCCCACACGAGCATCACA 62.171 60.000 0.00 0.00 33.17 3.58
401 404 1.448540 CTCCCCACACGAGCATCAC 60.449 63.158 0.00 0.00 33.17 3.06
402 405 0.977627 ATCTCCCCACACGAGCATCA 60.978 55.000 0.00 0.00 33.17 3.07
403 406 0.249657 GATCTCCCCACACGAGCATC 60.250 60.000 0.00 0.00 0.00 3.91
404 407 0.689080 AGATCTCCCCACACGAGCAT 60.689 55.000 0.00 0.00 0.00 3.79
405 408 0.033503 TAGATCTCCCCACACGAGCA 60.034 55.000 0.00 0.00 0.00 4.26
406 409 1.112113 TTAGATCTCCCCACACGAGC 58.888 55.000 0.00 0.00 0.00 5.03
407 410 2.099921 CTGTTAGATCTCCCCACACGAG 59.900 54.545 0.00 0.00 0.00 4.18
408 411 2.100197 CTGTTAGATCTCCCCACACGA 58.900 52.381 0.00 0.00 0.00 4.35
409 412 1.471676 GCTGTTAGATCTCCCCACACG 60.472 57.143 0.00 0.00 0.00 4.49
410 413 1.471676 CGCTGTTAGATCTCCCCACAC 60.472 57.143 0.00 0.00 0.00 3.82
411 414 0.824109 CGCTGTTAGATCTCCCCACA 59.176 55.000 0.00 0.00 0.00 4.17
412 415 0.824759 ACGCTGTTAGATCTCCCCAC 59.175 55.000 0.00 0.00 0.00 4.61
413 416 0.824109 CACGCTGTTAGATCTCCCCA 59.176 55.000 0.00 0.00 0.00 4.96
414 417 0.105039 CCACGCTGTTAGATCTCCCC 59.895 60.000 0.00 0.00 0.00 4.81
415 418 0.105039 CCCACGCTGTTAGATCTCCC 59.895 60.000 0.00 0.00 0.00 4.30
416 419 1.067821 CTCCCACGCTGTTAGATCTCC 59.932 57.143 0.00 0.00 0.00 3.71
417 420 1.067821 CCTCCCACGCTGTTAGATCTC 59.932 57.143 0.00 0.00 0.00 2.75
418 421 1.115467 CCTCCCACGCTGTTAGATCT 58.885 55.000 0.00 0.00 0.00 2.75
419 422 0.824759 ACCTCCCACGCTGTTAGATC 59.175 55.000 0.00 0.00 0.00 2.75
420 423 0.537188 CACCTCCCACGCTGTTAGAT 59.463 55.000 0.00 0.00 0.00 1.98
421 424 1.541310 CCACCTCCCACGCTGTTAGA 61.541 60.000 0.00 0.00 0.00 2.10
422 425 1.079127 CCACCTCCCACGCTGTTAG 60.079 63.158 0.00 0.00 0.00 2.34
423 426 2.589157 CCCACCTCCCACGCTGTTA 61.589 63.158 0.00 0.00 0.00 2.41
424 427 3.953775 CCCACCTCCCACGCTGTT 61.954 66.667 0.00 0.00 0.00 3.16
429 432 2.976494 AAACAAGCCCACCTCCCACG 62.976 60.000 0.00 0.00 0.00 4.94
430 433 1.152546 AAACAAGCCCACCTCCCAC 60.153 57.895 0.00 0.00 0.00 4.61
431 434 1.152830 GAAACAAGCCCACCTCCCA 59.847 57.895 0.00 0.00 0.00 4.37
432 435 0.895559 CAGAAACAAGCCCACCTCCC 60.896 60.000 0.00 0.00 0.00 4.30
433 436 1.527433 GCAGAAACAAGCCCACCTCC 61.527 60.000 0.00 0.00 0.00 4.30
434 437 0.823356 TGCAGAAACAAGCCCACCTC 60.823 55.000 0.00 0.00 0.00 3.85
435 438 0.396974 TTGCAGAAACAAGCCCACCT 60.397 50.000 0.00 0.00 0.00 4.00
436 439 0.249447 GTTGCAGAAACAAGCCCACC 60.249 55.000 0.00 0.00 38.75 4.61
437 440 0.459489 TGTTGCAGAAACAAGCCCAC 59.541 50.000 0.00 0.00 45.85 4.61
438 441 2.893441 TGTTGCAGAAACAAGCCCA 58.107 47.368 0.00 0.00 45.85 5.36
444 447 2.712539 CGCGGTGTTGCAGAAACA 59.287 55.556 0.00 0.00 46.66 2.83
445 448 2.662091 AAGCGCGGTGTTGCAGAAAC 62.662 55.000 13.41 0.00 39.41 2.78
446 449 2.477176 AAGCGCGGTGTTGCAGAAA 61.477 52.632 13.41 0.00 34.15 2.52
447 450 2.899838 AAGCGCGGTGTTGCAGAA 60.900 55.556 13.41 0.00 34.15 3.02
448 451 3.648982 CAAGCGCGGTGTTGCAGA 61.649 61.111 13.41 0.00 34.15 4.26
449 452 3.468266 AACAAGCGCGGTGTTGCAG 62.468 57.895 25.39 0.35 37.80 4.41
450 453 3.513438 AACAAGCGCGGTGTTGCA 61.513 55.556 25.39 0.00 37.80 4.08
451 454 3.024043 CAACAAGCGCGGTGTTGC 61.024 61.111 32.48 5.90 46.63 4.17
461 464 0.752658 ACCTCCCTTTTGCAACAAGC 59.247 50.000 0.00 0.00 45.96 4.01
462 465 1.069049 CCACCTCCCTTTTGCAACAAG 59.931 52.381 0.00 6.52 0.00 3.16
463 466 1.118838 CCACCTCCCTTTTGCAACAA 58.881 50.000 0.00 0.00 0.00 2.83
464 467 0.758685 CCCACCTCCCTTTTGCAACA 60.759 55.000 0.00 0.00 0.00 3.33
465 468 1.471829 CCCCACCTCCCTTTTGCAAC 61.472 60.000 0.00 0.00 0.00 4.17
466 469 1.152355 CCCCACCTCCCTTTTGCAA 60.152 57.895 0.00 0.00 0.00 4.08
467 470 1.660019 TTCCCCACCTCCCTTTTGCA 61.660 55.000 0.00 0.00 0.00 4.08
468 471 1.155155 TTCCCCACCTCCCTTTTGC 59.845 57.895 0.00 0.00 0.00 3.68
469 472 0.893727 CGTTCCCCACCTCCCTTTTG 60.894 60.000 0.00 0.00 0.00 2.44
470 473 1.358051 ACGTTCCCCACCTCCCTTTT 61.358 55.000 0.00 0.00 0.00 2.27
471 474 1.772979 ACGTTCCCCACCTCCCTTT 60.773 57.895 0.00 0.00 0.00 3.11
472 475 2.122099 ACGTTCCCCACCTCCCTT 60.122 61.111 0.00 0.00 0.00 3.95
473 476 2.928396 CACGTTCCCCACCTCCCT 60.928 66.667 0.00 0.00 0.00 4.20
474 477 4.029809 CCACGTTCCCCACCTCCC 62.030 72.222 0.00 0.00 0.00 4.30
475 478 4.029809 CCCACGTTCCCCACCTCC 62.030 72.222 0.00 0.00 0.00 4.30
476 479 2.826003 AACCCACGTTCCCCACCTC 61.826 63.158 0.00 0.00 0.00 3.85
477 480 2.775219 AACCCACGTTCCCCACCT 60.775 61.111 0.00 0.00 0.00 4.00
478 481 2.054473 TACAACCCACGTTCCCCACC 62.054 60.000 0.00 0.00 0.00 4.61
479 482 0.886043 GTACAACCCACGTTCCCCAC 60.886 60.000 0.00 0.00 0.00 4.61
480 483 1.343431 TGTACAACCCACGTTCCCCA 61.343 55.000 0.00 0.00 0.00 4.96
481 484 0.037160 ATGTACAACCCACGTTCCCC 59.963 55.000 0.00 0.00 0.00 4.81
482 485 1.538075 CAATGTACAACCCACGTTCCC 59.462 52.381 0.00 0.00 0.00 3.97
483 486 1.538075 CCAATGTACAACCCACGTTCC 59.462 52.381 0.00 0.00 0.00 3.62
484 487 2.224784 GTCCAATGTACAACCCACGTTC 59.775 50.000 0.00 0.00 0.00 3.95
485 488 2.223745 GTCCAATGTACAACCCACGTT 58.776 47.619 0.00 0.00 0.00 3.99
486 489 1.874739 CGTCCAATGTACAACCCACGT 60.875 52.381 0.00 0.00 0.00 4.49
487 490 0.793861 CGTCCAATGTACAACCCACG 59.206 55.000 0.00 3.00 0.00 4.94
488 491 1.161843 CCGTCCAATGTACAACCCAC 58.838 55.000 0.00 0.00 0.00 4.61
489 492 0.606944 GCCGTCCAATGTACAACCCA 60.607 55.000 0.00 0.00 0.00 4.51
490 493 1.310216 GGCCGTCCAATGTACAACCC 61.310 60.000 0.00 0.00 0.00 4.11
491 494 0.606944 TGGCCGTCCAATGTACAACC 60.607 55.000 0.00 0.00 39.99 3.77
492 495 0.802494 CTGGCCGTCCAATGTACAAC 59.198 55.000 0.00 0.00 42.91 3.32
493 496 0.958382 GCTGGCCGTCCAATGTACAA 60.958 55.000 0.00 0.00 42.91 2.41
494 497 1.376683 GCTGGCCGTCCAATGTACA 60.377 57.895 0.00 0.00 42.91 2.90
495 498 1.369091 CTGCTGGCCGTCCAATGTAC 61.369 60.000 0.00 0.00 42.91 2.90
496 499 1.078497 CTGCTGGCCGTCCAATGTA 60.078 57.895 0.00 0.00 42.91 2.29
497 500 2.360350 CTGCTGGCCGTCCAATGT 60.360 61.111 0.00 0.00 42.91 2.71
498 501 3.818787 GCTGCTGGCCGTCCAATG 61.819 66.667 0.00 0.00 42.91 2.82
510 513 4.393155 TTGGATGGACGCGCTGCT 62.393 61.111 5.73 0.00 0.00 4.24
511 514 4.166011 GTTGGATGGACGCGCTGC 62.166 66.667 5.73 0.00 0.00 5.25
512 515 3.853330 CGTTGGATGGACGCGCTG 61.853 66.667 5.73 1.02 33.42 5.18
517 520 2.819595 CTGGCCGTTGGATGGACG 60.820 66.667 0.00 0.00 33.95 4.79
518 521 3.134127 GCTGGCCGTTGGATGGAC 61.134 66.667 0.00 0.00 30.99 4.02
519 522 4.424711 GGCTGGCCGTTGGATGGA 62.425 66.667 0.00 0.00 0.00 3.41
520 523 4.738998 TGGCTGGCCGTTGGATGG 62.739 66.667 7.14 0.00 39.42 3.51
521 524 3.136123 CTGGCTGGCCGTTGGATG 61.136 66.667 7.14 0.00 39.42 3.51
522 525 4.431131 CCTGGCTGGCCGTTGGAT 62.431 66.667 7.14 0.00 39.42 3.41
535 538 3.508840 GAAACATCCGCCGCCTGG 61.509 66.667 0.00 0.00 38.77 4.45
536 539 3.508840 GGAAACATCCGCCGCCTG 61.509 66.667 0.00 0.00 0.00 4.85
537 540 2.837031 ATTGGAAACATCCGCCGCCT 62.837 55.000 0.00 0.00 42.32 5.52
538 541 1.944234 AATTGGAAACATCCGCCGCC 61.944 55.000 0.00 0.00 42.32 6.13
539 542 0.525455 GAATTGGAAACATCCGCCGC 60.525 55.000 0.00 0.00 42.32 6.53
540 543 0.808125 TGAATTGGAAACATCCGCCG 59.192 50.000 0.00 0.00 42.32 6.46
541 544 2.223805 GGATGAATTGGAAACATCCGCC 60.224 50.000 0.00 0.00 46.40 6.13
542 545 3.084070 GGATGAATTGGAAACATCCGC 57.916 47.619 0.00 0.00 46.40 5.54
545 548 3.181487 CCGGTGGATGAATTGGAAACATC 60.181 47.826 0.00 0.00 42.32 3.06
546 549 2.760092 CCGGTGGATGAATTGGAAACAT 59.240 45.455 0.00 0.00 42.32 2.71
547 550 2.166829 CCGGTGGATGAATTGGAAACA 58.833 47.619 0.00 0.00 39.83 2.83
548 551 1.135112 GCCGGTGGATGAATTGGAAAC 60.135 52.381 1.90 0.00 0.00 2.78
549 552 1.181786 GCCGGTGGATGAATTGGAAA 58.818 50.000 1.90 0.00 0.00 3.13
550 553 1.029408 CGCCGGTGGATGAATTGGAA 61.029 55.000 7.26 0.00 0.00 3.53
551 554 1.451207 CGCCGGTGGATGAATTGGA 60.451 57.895 7.26 0.00 0.00 3.53
552 555 2.480610 CCGCCGGTGGATGAATTGG 61.481 63.158 30.98 0.00 0.00 3.16
553 556 1.451207 TCCGCCGGTGGATGAATTG 60.451 57.895 32.96 4.86 31.53 2.32
554 557 1.451387 GTCCGCCGGTGGATGAATT 60.451 57.895 37.90 0.00 40.91 2.17
555 558 2.189521 GTCCGCCGGTGGATGAAT 59.810 61.111 37.90 0.00 40.91 2.57
556 559 4.444838 CGTCCGCCGGTGGATGAA 62.445 66.667 41.52 19.21 46.14 2.57
569 572 4.228567 GAGGGCTGCTAGGCGTCC 62.229 72.222 16.18 1.99 46.03 4.79
572 575 4.277593 CTCGAGGGCTGCTAGGCG 62.278 72.222 3.91 0.00 42.43 5.52
573 576 1.961180 TTTCTCGAGGGCTGCTAGGC 61.961 60.000 13.56 1.84 40.51 3.93
574 577 0.179097 GTTTCTCGAGGGCTGCTAGG 60.179 60.000 13.56 0.00 0.00 3.02
575 578 0.532573 TGTTTCTCGAGGGCTGCTAG 59.467 55.000 13.56 0.00 0.00 3.42
576 579 0.973632 TTGTTTCTCGAGGGCTGCTA 59.026 50.000 13.56 0.00 0.00 3.49
577 580 0.326264 ATTGTTTCTCGAGGGCTGCT 59.674 50.000 13.56 0.00 0.00 4.24
578 581 0.449388 CATTGTTTCTCGAGGGCTGC 59.551 55.000 13.56 0.00 0.00 5.25
579 582 1.089920 CCATTGTTTCTCGAGGGCTG 58.910 55.000 13.56 2.38 0.00 4.85
580 583 0.035056 CCCATTGTTTCTCGAGGGCT 60.035 55.000 13.56 0.00 30.56 5.19
581 584 0.322546 ACCCATTGTTTCTCGAGGGC 60.323 55.000 13.56 3.78 39.97 5.19
582 585 1.739067 GACCCATTGTTTCTCGAGGG 58.261 55.000 13.56 6.57 42.07 4.30
583 586 1.359848 CGACCCATTGTTTCTCGAGG 58.640 55.000 13.56 0.00 0.00 4.63
584 587 0.721718 GCGACCCATTGTTTCTCGAG 59.278 55.000 5.93 5.93 0.00 4.04
585 588 0.034198 TGCGACCCATTGTTTCTCGA 59.966 50.000 0.00 0.00 0.00 4.04
586 589 0.871722 TTGCGACCCATTGTTTCTCG 59.128 50.000 0.00 0.00 0.00 4.04
587 590 1.880027 ACTTGCGACCCATTGTTTCTC 59.120 47.619 0.00 0.00 0.00 2.87
588 591 1.608590 CACTTGCGACCCATTGTTTCT 59.391 47.619 0.00 0.00 0.00 2.52
589 592 1.606668 TCACTTGCGACCCATTGTTTC 59.393 47.619 0.00 0.00 0.00 2.78
590 593 1.686355 TCACTTGCGACCCATTGTTT 58.314 45.000 0.00 0.00 0.00 2.83
591 594 1.686355 TTCACTTGCGACCCATTGTT 58.314 45.000 0.00 0.00 0.00 2.83
592 595 1.686355 TTTCACTTGCGACCCATTGT 58.314 45.000 0.00 0.00 0.00 2.71
593 596 2.228582 TGATTTCACTTGCGACCCATTG 59.771 45.455 0.00 0.00 0.00 2.82
594 597 2.513753 TGATTTCACTTGCGACCCATT 58.486 42.857 0.00 0.00 0.00 3.16
595 598 2.198827 TGATTTCACTTGCGACCCAT 57.801 45.000 0.00 0.00 0.00 4.00
596 599 1.811965 CATGATTTCACTTGCGACCCA 59.188 47.619 0.00 0.00 0.00 4.51
597 600 2.083774 TCATGATTTCACTTGCGACCC 58.916 47.619 0.00 0.00 0.00 4.46
598 601 3.189287 AGTTCATGATTTCACTTGCGACC 59.811 43.478 0.00 0.00 0.00 4.79
599 602 4.410492 AGTTCATGATTTCACTTGCGAC 57.590 40.909 0.00 0.00 0.00 5.19
600 603 5.700832 ACTAAGTTCATGATTTCACTTGCGA 59.299 36.000 17.11 1.32 31.83 5.10
601 604 5.931532 ACTAAGTTCATGATTTCACTTGCG 58.068 37.500 17.11 11.69 31.83 4.85
602 605 6.902341 TGACTAAGTTCATGATTTCACTTGC 58.098 36.000 17.11 9.28 31.83 4.01
603 606 9.979270 GTATGACTAAGTTCATGATTTCACTTG 57.021 33.333 17.11 11.08 36.84 3.16
604 607 9.725019 TGTATGACTAAGTTCATGATTTCACTT 57.275 29.630 13.54 13.54 36.84 3.16
605 608 9.725019 TTGTATGACTAAGTTCATGATTTCACT 57.275 29.630 0.00 0.00 36.84 3.41
608 611 9.478019 CGTTTGTATGACTAAGTTCATGATTTC 57.522 33.333 0.00 0.00 36.84 2.17
609 612 9.214957 TCGTTTGTATGACTAAGTTCATGATTT 57.785 29.630 0.00 0.00 36.84 2.17
610 613 8.656849 GTCGTTTGTATGACTAAGTTCATGATT 58.343 33.333 0.00 0.00 36.84 2.57
611 614 7.277981 GGTCGTTTGTATGACTAAGTTCATGAT 59.722 37.037 0.00 0.00 39.71 2.45
612 615 6.588756 GGTCGTTTGTATGACTAAGTTCATGA 59.411 38.462 0.00 0.00 39.71 3.07
613 616 6.183360 GGGTCGTTTGTATGACTAAGTTCATG 60.183 42.308 0.00 0.00 39.71 3.07
614 617 5.873164 GGGTCGTTTGTATGACTAAGTTCAT 59.127 40.000 0.00 0.00 39.71 2.57
615 618 5.232463 GGGTCGTTTGTATGACTAAGTTCA 58.768 41.667 0.00 0.00 39.71 3.18
616 619 4.325472 CGGGTCGTTTGTATGACTAAGTTC 59.675 45.833 0.00 0.00 39.71 3.01
617 620 4.240096 CGGGTCGTTTGTATGACTAAGTT 58.760 43.478 0.00 0.00 39.71 2.66
618 621 3.367703 CCGGGTCGTTTGTATGACTAAGT 60.368 47.826 0.00 0.00 39.71 2.24
619 622 3.184541 CCGGGTCGTTTGTATGACTAAG 58.815 50.000 0.00 0.00 39.71 2.18
620 623 2.562298 ACCGGGTCGTTTGTATGACTAA 59.438 45.455 6.32 0.00 39.71 2.24
621 624 2.170166 ACCGGGTCGTTTGTATGACTA 58.830 47.619 6.32 0.00 39.71 2.59
622 625 0.971386 ACCGGGTCGTTTGTATGACT 59.029 50.000 6.32 0.00 39.71 3.41
623 626 2.262211 GTACCGGGTCGTTTGTATGAC 58.738 52.381 6.32 0.00 39.18 3.06
624 627 1.891811 TGTACCGGGTCGTTTGTATGA 59.108 47.619 6.32 0.00 0.00 2.15
625 628 1.994779 GTGTACCGGGTCGTTTGTATG 59.005 52.381 6.32 0.00 0.00 2.39
626 629 1.617850 TGTGTACCGGGTCGTTTGTAT 59.382 47.619 6.32 0.00 0.00 2.29
627 630 1.035923 TGTGTACCGGGTCGTTTGTA 58.964 50.000 6.32 0.00 0.00 2.41
628 631 0.530431 GTGTGTACCGGGTCGTTTGT 60.530 55.000 6.32 0.00 0.00 2.83
629 632 0.530211 TGTGTGTACCGGGTCGTTTG 60.530 55.000 6.32 0.00 0.00 2.93
630 633 0.530431 GTGTGTGTACCGGGTCGTTT 60.530 55.000 6.32 0.00 0.00 3.60
631 634 1.067916 GTGTGTGTACCGGGTCGTT 59.932 57.895 6.32 0.00 0.00 3.85
632 635 1.674764 TTGTGTGTGTACCGGGTCGT 61.675 55.000 6.32 0.00 0.00 4.34
633 636 0.530211 TTTGTGTGTGTACCGGGTCG 60.530 55.000 6.32 0.00 0.00 4.79
634 637 1.223187 CTTTGTGTGTGTACCGGGTC 58.777 55.000 6.32 0.00 0.00 4.46
635 638 0.179040 CCTTTGTGTGTGTACCGGGT 60.179 55.000 6.32 4.46 0.00 5.28
636 639 0.179040 ACCTTTGTGTGTGTACCGGG 60.179 55.000 6.32 0.00 0.00 5.73
637 640 2.529780 TACCTTTGTGTGTGTACCGG 57.470 50.000 0.00 0.00 0.00 5.28
638 641 4.512198 TCATTTACCTTTGTGTGTGTACCG 59.488 41.667 0.00 0.00 0.00 4.02
639 642 5.048991 CCTCATTTACCTTTGTGTGTGTACC 60.049 44.000 0.00 0.00 0.00 3.34
640 643 5.761234 TCCTCATTTACCTTTGTGTGTGTAC 59.239 40.000 0.00 0.00 0.00 2.90
641 644 5.931294 TCCTCATTTACCTTTGTGTGTGTA 58.069 37.500 0.00 0.00 0.00 2.90
642 645 4.787551 TCCTCATTTACCTTTGTGTGTGT 58.212 39.130 0.00 0.00 0.00 3.72
643 646 5.766150 TTCCTCATTTACCTTTGTGTGTG 57.234 39.130 0.00 0.00 0.00 3.82
644 647 5.891551 ACTTTCCTCATTTACCTTTGTGTGT 59.108 36.000 0.00 0.00 0.00 3.72
645 648 6.391227 ACTTTCCTCATTTACCTTTGTGTG 57.609 37.500 0.00 0.00 0.00 3.82
646 649 7.119262 CGATACTTTCCTCATTTACCTTTGTGT 59.881 37.037 0.00 0.00 0.00 3.72
647 650 7.119262 ACGATACTTTCCTCATTTACCTTTGTG 59.881 37.037 0.00 0.00 0.00 3.33
648 651 7.166167 ACGATACTTTCCTCATTTACCTTTGT 58.834 34.615 0.00 0.00 0.00 2.83
649 652 7.611213 ACGATACTTTCCTCATTTACCTTTG 57.389 36.000 0.00 0.00 0.00 2.77
650 653 8.631480 AAACGATACTTTCCTCATTTACCTTT 57.369 30.769 0.00 0.00 0.00 3.11
651 654 8.631480 AAAACGATACTTTCCTCATTTACCTT 57.369 30.769 0.00 0.00 0.00 3.50
652 655 7.336176 GGAAAACGATACTTTCCTCATTTACCT 59.664 37.037 7.02 0.00 45.66 3.08
653 656 7.470079 GGAAAACGATACTTTCCTCATTTACC 58.530 38.462 7.02 0.00 45.66 2.85
804 807 3.088532 AGTCAGCAAGGAGACTAGTCAG 58.911 50.000 24.44 9.72 42.92 3.51
831 834 0.323087 TGCATCTGCCAAGTCAGCAT 60.323 50.000 0.00 0.00 40.04 3.79
887 931 0.580578 GACGATAGAGTGCTACGCGA 59.419 55.000 15.93 0.00 41.38 5.87
925 969 2.753043 GGGGACGGCGACAGAGTA 60.753 66.667 16.62 0.00 0.00 2.59
1219 1385 4.049869 ACGAAACAACAAACAAAAACGGT 58.950 34.783 0.00 0.00 0.00 4.83
1226 1392 3.902150 TGCTCAACGAAACAACAAACAA 58.098 36.364 0.00 0.00 0.00 2.83
1250 1416 7.527084 AGAATCACGCAAAGACTATAACTTC 57.473 36.000 0.00 0.00 0.00 3.01
1344 1517 4.890088 AGCGTACTGACAAACTTATCCAA 58.110 39.130 0.00 0.00 0.00 3.53
1437 1610 1.070289 CATGAGAGCATGCTCCAGCTA 59.930 52.381 37.79 22.36 44.76 3.32
1490 1663 4.037690 GCGCTTTTAAATCCAGCACATAG 58.962 43.478 0.00 0.00 32.71 2.23
1565 1738 9.421806 CAGAAAAAGATGGCAAATTTGTACATA 57.578 29.630 22.07 0.00 31.46 2.29
1819 2880 1.229368 TGGGTGGGCTAGTGCTGTA 60.229 57.895 0.00 0.00 39.59 2.74
1862 2928 0.103937 GCGAAGGGAGTGGATGAGAG 59.896 60.000 0.00 0.00 0.00 3.20
1899 2968 1.805539 CGGCGTTGAGAAGCGATGA 60.806 57.895 0.00 0.00 0.00 2.92
1971 3043 1.004044 CTGCTCACAGTTTCCTCCCAT 59.996 52.381 0.00 0.00 39.22 4.00
2014 3086 1.452108 CCTCCACATCGGCCCTTTC 60.452 63.158 0.00 0.00 33.14 2.62
2039 3111 3.216800 TGCAAGCTCAGAAATCTGTTGT 58.783 40.909 10.06 0.00 44.12 3.32
2061 3133 0.827368 TAGCATGGTCCACGCACATA 59.173 50.000 13.29 0.00 0.00 2.29
2367 3440 1.203441 TCCACATCCTGCTCCTGCTT 61.203 55.000 0.00 0.00 40.48 3.91
2406 6365 1.377725 CCTCCACATCCAGCACCAC 60.378 63.158 0.00 0.00 0.00 4.16
2407 6366 1.538629 TCCTCCACATCCAGCACCA 60.539 57.895 0.00 0.00 0.00 4.17
2408 6367 1.078143 GTCCTCCACATCCAGCACC 60.078 63.158 0.00 0.00 0.00 5.01
2409 6368 0.392193 CTGTCCTCCACATCCAGCAC 60.392 60.000 0.00 0.00 33.23 4.40
2410 6369 1.985614 CTGTCCTCCACATCCAGCA 59.014 57.895 0.00 0.00 33.23 4.41
2411 6370 1.451028 GCTGTCCTCCACATCCAGC 60.451 63.158 0.00 0.00 41.37 4.85
2412 6371 1.153489 CGCTGTCCTCCACATCCAG 60.153 63.158 0.00 0.00 33.23 3.86
2413 6372 1.607801 CTCGCTGTCCTCCACATCCA 61.608 60.000 0.00 0.00 33.23 3.41
2414 6373 1.142748 CTCGCTGTCCTCCACATCC 59.857 63.158 0.00 0.00 33.23 3.51
2462 6457 4.316823 ACCTCCCCCTCGCTGTCA 62.317 66.667 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.