Multiple sequence alignment - TraesCS3A01G430600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G430600 chr3A 100.000 2307 0 0 1 2307 672890351 672888045 0 4261
1 TraesCS3A01G430600 chr3A 98.285 1866 31 1 443 2307 66006143 66004278 0 3267
2 TraesCS3A01G430600 chr3A 98.430 446 7 0 1 446 64984377 64983932 0 785
3 TraesCS3A01G430600 chr3A 98.430 446 7 0 1 446 672897249 672896804 0 785
4 TraesCS3A01G430600 chr6D 98.393 1867 28 2 443 2307 389246833 389244967 0 3280
5 TraesCS3A01G430600 chr2D 98.393 1867 28 2 443 2307 591983598 591985464 0 3280
6 TraesCS3A01G430600 chr7D 98.392 1866 29 1 443 2307 231555436 231553571 0 3278
7 TraesCS3A01G430600 chr3D 98.392 1866 28 2 443 2307 589264535 589262671 0 3278
8 TraesCS3A01G430600 chr7B 98.286 1867 30 2 443 2307 663100436 663098570 0 3269
9 TraesCS3A01G430600 chr7B 98.125 1867 33 2 443 2307 662725393 662727259 0 3253
10 TraesCS3A01G430600 chr5D 98.232 1867 31 2 443 2307 503244261 503246127 0 3264
11 TraesCS3A01G430600 chr2A 98.232 1867 31 2 443 2307 726907466 726905600 0 3264
12 TraesCS3A01G430600 chr7A 98.210 447 8 0 1 447 477501 477947 0 782
13 TraesCS3A01G430600 chr7A 98.206 446 8 0 1 446 736374850 736374405 0 780
14 TraesCS3A01G430600 chr6A 98.004 451 8 1 1 451 170548459 170548908 0 782
15 TraesCS3A01G430600 chr6A 98.206 446 8 0 1 446 9567268 9566823 0 780
16 TraesCS3A01G430600 chr5A 98.206 446 8 0 1 446 423882254 423881809 0 780
17 TraesCS3A01G430600 chr1A 98.206 446 8 0 1 446 235634266 235634711 0 780
18 TraesCS3A01G430600 chr1A 97.363 455 11 1 1 455 471446857 471447310 0 773


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G430600 chr3A 672888045 672890351 2306 True 4261 4261 100.000 1 2307 1 chr3A.!!$R3 2306
1 TraesCS3A01G430600 chr3A 66004278 66006143 1865 True 3267 3267 98.285 443 2307 1 chr3A.!!$R2 1864
2 TraesCS3A01G430600 chr6D 389244967 389246833 1866 True 3280 3280 98.393 443 2307 1 chr6D.!!$R1 1864
3 TraesCS3A01G430600 chr2D 591983598 591985464 1866 False 3280 3280 98.393 443 2307 1 chr2D.!!$F1 1864
4 TraesCS3A01G430600 chr7D 231553571 231555436 1865 True 3278 3278 98.392 443 2307 1 chr7D.!!$R1 1864
5 TraesCS3A01G430600 chr3D 589262671 589264535 1864 True 3278 3278 98.392 443 2307 1 chr3D.!!$R1 1864
6 TraesCS3A01G430600 chr7B 663098570 663100436 1866 True 3269 3269 98.286 443 2307 1 chr7B.!!$R1 1864
7 TraesCS3A01G430600 chr7B 662725393 662727259 1866 False 3253 3253 98.125 443 2307 1 chr7B.!!$F1 1864
8 TraesCS3A01G430600 chr5D 503244261 503246127 1866 False 3264 3264 98.232 443 2307 1 chr5D.!!$F1 1864
9 TraesCS3A01G430600 chr2A 726905600 726907466 1866 True 3264 3264 98.232 443 2307 1 chr2A.!!$R1 1864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.034896 ACACCCAAAGCACTCCTACG 59.965 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2076 0.568192 AGGGAAGCCTAGGATAGCCA 59.432 55.0 14.75 0.0 37.37 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.831702 CGGAGATACTTGTAGTGTACCTT 57.168 43.478 0.00 0.00 0.00 3.50
23 24 6.205101 CGGAGATACTTGTAGTGTACCTTT 57.795 41.667 0.00 0.00 0.00 3.11
24 25 7.325660 CGGAGATACTTGTAGTGTACCTTTA 57.674 40.000 0.00 0.00 0.00 1.85
25 26 7.938715 CGGAGATACTTGTAGTGTACCTTTAT 58.061 38.462 0.00 0.00 0.00 1.40
26 27 9.060347 CGGAGATACTTGTAGTGTACCTTTATA 57.940 37.037 0.00 0.00 0.00 0.98
28 29 9.896263 GAGATACTTGTAGTGTACCTTTATAGC 57.104 37.037 0.00 0.00 0.00 2.97
29 30 8.858094 AGATACTTGTAGTGTACCTTTATAGCC 58.142 37.037 0.00 0.00 0.00 3.93
30 31 6.862469 ACTTGTAGTGTACCTTTATAGCCA 57.138 37.500 0.00 0.00 0.00 4.75
31 32 6.637657 ACTTGTAGTGTACCTTTATAGCCAC 58.362 40.000 0.00 0.00 0.00 5.01
32 33 5.603170 TGTAGTGTACCTTTATAGCCACC 57.397 43.478 0.00 0.00 0.00 4.61
33 34 4.406649 TGTAGTGTACCTTTATAGCCACCC 59.593 45.833 0.00 0.00 0.00 4.61
34 35 3.456842 AGTGTACCTTTATAGCCACCCA 58.543 45.455 0.00 0.00 0.00 4.51
35 36 3.454812 AGTGTACCTTTATAGCCACCCAG 59.545 47.826 0.00 0.00 0.00 4.45
36 37 3.199289 GTGTACCTTTATAGCCACCCAGT 59.801 47.826 0.00 0.00 0.00 4.00
37 38 3.847780 TGTACCTTTATAGCCACCCAGTT 59.152 43.478 0.00 0.00 0.00 3.16
38 39 5.031495 TGTACCTTTATAGCCACCCAGTTA 58.969 41.667 0.00 0.00 0.00 2.24
39 40 4.498894 ACCTTTATAGCCACCCAGTTAC 57.501 45.455 0.00 0.00 0.00 2.50
40 41 3.118519 ACCTTTATAGCCACCCAGTTACG 60.119 47.826 0.00 0.00 0.00 3.18
41 42 3.118519 CCTTTATAGCCACCCAGTTACGT 60.119 47.826 0.00 0.00 0.00 3.57
42 43 4.510571 CTTTATAGCCACCCAGTTACGTT 58.489 43.478 0.00 0.00 0.00 3.99
43 44 2.396590 ATAGCCACCCAGTTACGTTG 57.603 50.000 0.00 0.00 0.00 4.10
44 45 1.050204 TAGCCACCCAGTTACGTTGT 58.950 50.000 0.00 0.00 0.00 3.32
45 46 0.534203 AGCCACCCAGTTACGTTGTG 60.534 55.000 0.00 0.00 0.00 3.33
46 47 0.533308 GCCACCCAGTTACGTTGTGA 60.533 55.000 0.00 0.00 0.00 3.58
47 48 1.223187 CCACCCAGTTACGTTGTGAC 58.777 55.000 0.00 0.00 0.00 3.67
56 57 4.278609 CGTTGTGACGTTTGGCAC 57.721 55.556 0.00 0.00 44.08 5.01
57 58 1.425825 CGTTGTGACGTTTGGCACA 59.574 52.632 0.00 0.00 44.08 4.57
58 59 0.859788 CGTTGTGACGTTTGGCACAC 60.860 55.000 2.92 1.86 43.97 3.82
59 60 0.524604 GTTGTGACGTTTGGCACACC 60.525 55.000 2.92 0.00 43.97 4.16
60 61 1.658686 TTGTGACGTTTGGCACACCC 61.659 55.000 2.92 0.00 43.97 4.61
61 62 2.115911 GTGACGTTTGGCACACCCA 61.116 57.895 0.00 0.00 43.51 4.51
68 69 2.278404 TGGCACACCCAAAGCACT 59.722 55.556 0.00 0.00 41.82 4.40
69 70 1.827789 TGGCACACCCAAAGCACTC 60.828 57.895 0.00 0.00 41.82 3.51
70 71 2.564721 GGCACACCCAAAGCACTCC 61.565 63.158 0.00 0.00 0.00 3.85
71 72 1.529244 GCACACCCAAAGCACTCCT 60.529 57.895 0.00 0.00 0.00 3.69
72 73 0.250727 GCACACCCAAAGCACTCCTA 60.251 55.000 0.00 0.00 0.00 2.94
73 74 1.523758 CACACCCAAAGCACTCCTAC 58.476 55.000 0.00 0.00 0.00 3.18
74 75 0.034896 ACACCCAAAGCACTCCTACG 59.965 55.000 0.00 0.00 0.00 3.51
75 76 0.673644 CACCCAAAGCACTCCTACGG 60.674 60.000 0.00 0.00 0.00 4.02
76 77 1.125711 ACCCAAAGCACTCCTACGGT 61.126 55.000 0.00 0.00 0.00 4.83
77 78 0.899720 CCCAAAGCACTCCTACGGTA 59.100 55.000 0.00 0.00 0.00 4.02
78 79 1.485066 CCCAAAGCACTCCTACGGTAT 59.515 52.381 0.00 0.00 0.00 2.73
79 80 2.483188 CCCAAAGCACTCCTACGGTATC 60.483 54.545 0.00 0.00 0.00 2.24
80 81 2.483188 CCAAAGCACTCCTACGGTATCC 60.483 54.545 0.00 0.00 0.00 2.59
81 82 2.154567 AAGCACTCCTACGGTATCCA 57.845 50.000 0.00 0.00 0.00 3.41
82 83 1.693627 AGCACTCCTACGGTATCCAG 58.306 55.000 0.00 0.00 0.00 3.86
83 84 0.674534 GCACTCCTACGGTATCCAGG 59.325 60.000 0.00 0.00 0.00 4.45
84 85 1.753141 GCACTCCTACGGTATCCAGGA 60.753 57.143 0.00 0.00 36.97 3.86
86 87 2.660670 CTCCTACGGTATCCAGGAGT 57.339 55.000 14.08 0.00 46.98 3.85
87 88 2.946785 CTCCTACGGTATCCAGGAGTT 58.053 52.381 14.08 0.00 46.98 3.01
88 89 2.623889 CTCCTACGGTATCCAGGAGTTG 59.376 54.545 14.08 0.00 46.98 3.16
89 90 1.068741 CCTACGGTATCCAGGAGTTGC 59.931 57.143 0.00 0.00 0.00 4.17
90 91 1.754803 CTACGGTATCCAGGAGTTGCA 59.245 52.381 0.00 0.00 0.00 4.08
91 92 0.249398 ACGGTATCCAGGAGTTGCAC 59.751 55.000 0.00 0.00 0.00 4.57
92 93 0.249120 CGGTATCCAGGAGTTGCACA 59.751 55.000 0.00 0.00 0.00 4.57
93 94 1.338674 CGGTATCCAGGAGTTGCACAA 60.339 52.381 0.00 0.00 0.00 3.33
94 95 2.680805 CGGTATCCAGGAGTTGCACAAT 60.681 50.000 0.00 0.00 0.00 2.71
95 96 2.945668 GGTATCCAGGAGTTGCACAATC 59.054 50.000 0.00 0.00 0.00 2.67
96 97 3.370953 GGTATCCAGGAGTTGCACAATCT 60.371 47.826 0.00 0.00 0.00 2.40
97 98 2.479566 TCCAGGAGTTGCACAATCTC 57.520 50.000 0.00 0.00 0.00 2.75
98 99 1.699083 TCCAGGAGTTGCACAATCTCA 59.301 47.619 12.06 0.00 0.00 3.27
99 100 2.306805 TCCAGGAGTTGCACAATCTCAT 59.693 45.455 12.06 5.39 0.00 2.90
100 101 2.422479 CCAGGAGTTGCACAATCTCATG 59.578 50.000 14.81 14.81 38.94 3.07
101 102 2.422479 CAGGAGTTGCACAATCTCATGG 59.578 50.000 14.32 0.00 36.69 3.66
102 103 2.040813 AGGAGTTGCACAATCTCATGGT 59.959 45.455 12.06 0.00 0.00 3.55
103 104 2.421424 GGAGTTGCACAATCTCATGGTC 59.579 50.000 12.06 0.00 0.00 4.02
104 105 3.341823 GAGTTGCACAATCTCATGGTCT 58.658 45.455 0.00 0.00 0.00 3.85
105 106 4.507710 GAGTTGCACAATCTCATGGTCTA 58.492 43.478 0.00 0.00 0.00 2.59
106 107 4.910195 AGTTGCACAATCTCATGGTCTAA 58.090 39.130 0.00 0.00 0.00 2.10
107 108 4.940046 AGTTGCACAATCTCATGGTCTAAG 59.060 41.667 0.00 0.00 0.00 2.18
108 109 3.877559 TGCACAATCTCATGGTCTAAGG 58.122 45.455 0.00 0.00 0.00 2.69
109 110 3.519107 TGCACAATCTCATGGTCTAAGGA 59.481 43.478 0.00 0.00 0.00 3.36
110 111 4.019411 TGCACAATCTCATGGTCTAAGGAA 60.019 41.667 0.00 0.00 0.00 3.36
111 112 4.943705 GCACAATCTCATGGTCTAAGGAAA 59.056 41.667 0.00 0.00 0.00 3.13
112 113 5.591877 GCACAATCTCATGGTCTAAGGAAAT 59.408 40.000 0.00 0.00 0.00 2.17
113 114 6.459298 GCACAATCTCATGGTCTAAGGAAATG 60.459 42.308 0.00 0.00 0.00 2.32
114 115 6.825213 CACAATCTCATGGTCTAAGGAAATGA 59.175 38.462 0.00 0.00 0.00 2.57
115 116 7.501559 CACAATCTCATGGTCTAAGGAAATGAT 59.498 37.037 0.00 0.00 31.04 2.45
116 117 8.717717 ACAATCTCATGGTCTAAGGAAATGATA 58.282 33.333 0.00 0.00 31.04 2.15
117 118 8.997323 CAATCTCATGGTCTAAGGAAATGATAC 58.003 37.037 0.00 0.00 31.04 2.24
118 119 7.921041 TCTCATGGTCTAAGGAAATGATACT 57.079 36.000 0.00 0.00 31.04 2.12
119 120 8.324191 TCTCATGGTCTAAGGAAATGATACTT 57.676 34.615 0.00 0.00 31.04 2.24
120 121 8.206867 TCTCATGGTCTAAGGAAATGATACTTG 58.793 37.037 0.00 0.00 31.04 3.16
121 122 8.089625 TCATGGTCTAAGGAAATGATACTTGA 57.910 34.615 0.00 0.00 0.00 3.02
122 123 7.987458 TCATGGTCTAAGGAAATGATACTTGAC 59.013 37.037 0.00 0.00 0.00 3.18
123 124 7.252612 TGGTCTAAGGAAATGATACTTGACA 57.747 36.000 0.00 0.00 30.76 3.58
124 125 7.861629 TGGTCTAAGGAAATGATACTTGACAT 58.138 34.615 0.00 0.00 30.76 3.06
125 126 8.328758 TGGTCTAAGGAAATGATACTTGACATT 58.671 33.333 0.00 0.00 38.18 2.71
126 127 9.832445 GGTCTAAGGAAATGATACTTGACATTA 57.168 33.333 0.00 0.00 35.99 1.90
133 134 9.508567 GGAAATGATACTTGACATTAGAAAAGC 57.491 33.333 0.00 0.00 35.99 3.51
139 140 9.709600 GATACTTGACATTAGAAAAGCTTTAGC 57.290 33.333 13.10 7.97 42.49 3.09
140 141 7.510549 ACTTGACATTAGAAAAGCTTTAGCA 57.489 32.000 13.10 0.00 45.16 3.49
141 142 8.115490 ACTTGACATTAGAAAAGCTTTAGCAT 57.885 30.769 13.10 0.00 45.16 3.79
142 143 9.231297 ACTTGACATTAGAAAAGCTTTAGCATA 57.769 29.630 13.10 0.54 45.16 3.14
143 144 9.495754 CTTGACATTAGAAAAGCTTTAGCATAC 57.504 33.333 13.10 1.75 45.16 2.39
144 145 7.684670 TGACATTAGAAAAGCTTTAGCATACG 58.315 34.615 13.10 1.72 45.16 3.06
145 146 7.547722 TGACATTAGAAAAGCTTTAGCATACGA 59.452 33.333 13.10 0.00 45.16 3.43
146 147 8.263940 ACATTAGAAAAGCTTTAGCATACGAA 57.736 30.769 13.10 3.87 45.16 3.85
147 148 8.175716 ACATTAGAAAAGCTTTAGCATACGAAC 58.824 33.333 13.10 0.00 45.16 3.95
148 149 7.900782 TTAGAAAAGCTTTAGCATACGAACT 57.099 32.000 13.10 0.00 45.16 3.01
149 150 8.991243 TTAGAAAAGCTTTAGCATACGAACTA 57.009 30.769 13.10 1.92 45.16 2.24
150 151 7.292129 AGAAAAGCTTTAGCATACGAACTAC 57.708 36.000 13.10 0.00 45.16 2.73
151 152 6.872020 AGAAAAGCTTTAGCATACGAACTACA 59.128 34.615 13.10 0.00 45.16 2.74
152 153 7.549488 AGAAAAGCTTTAGCATACGAACTACAT 59.451 33.333 13.10 0.00 45.16 2.29
153 154 6.589830 AAGCTTTAGCATACGAACTACATG 57.410 37.500 4.33 0.00 45.16 3.21
154 155 5.902681 AGCTTTAGCATACGAACTACATGA 58.097 37.500 0.00 0.00 45.16 3.07
155 156 6.516718 AGCTTTAGCATACGAACTACATGAT 58.483 36.000 0.00 0.00 45.16 2.45
156 157 6.642950 AGCTTTAGCATACGAACTACATGATC 59.357 38.462 0.00 0.00 45.16 2.92
157 158 6.642950 GCTTTAGCATACGAACTACATGATCT 59.357 38.462 0.00 0.00 41.59 2.75
158 159 7.169982 GCTTTAGCATACGAACTACATGATCTT 59.830 37.037 0.00 0.00 41.59 2.40
159 160 7.930513 TTAGCATACGAACTACATGATCTTG 57.069 36.000 0.00 7.04 0.00 3.02
160 161 5.907207 AGCATACGAACTACATGATCTTGT 58.093 37.500 17.37 17.37 0.00 3.16
161 162 5.750547 AGCATACGAACTACATGATCTTGTG 59.249 40.000 21.20 14.18 0.00 3.33
162 163 5.557136 GCATACGAACTACATGATCTTGTGC 60.557 44.000 21.20 10.70 30.47 4.57
163 164 4.193826 ACGAACTACATGATCTTGTGCT 57.806 40.909 21.20 7.82 0.00 4.40
164 165 5.324784 ACGAACTACATGATCTTGTGCTA 57.675 39.130 21.20 3.95 0.00 3.49
165 166 5.344066 ACGAACTACATGATCTTGTGCTAG 58.656 41.667 21.20 14.16 0.00 3.42
166 167 4.742167 CGAACTACATGATCTTGTGCTAGG 59.258 45.833 21.20 10.18 0.00 3.02
167 168 4.065321 ACTACATGATCTTGTGCTAGGC 57.935 45.455 21.20 0.00 0.00 3.93
168 169 3.708631 ACTACATGATCTTGTGCTAGGCT 59.291 43.478 21.20 0.00 0.00 4.58
169 170 4.895889 ACTACATGATCTTGTGCTAGGCTA 59.104 41.667 21.20 0.00 0.00 3.93
170 171 4.760530 ACATGATCTTGTGCTAGGCTAA 57.239 40.909 13.08 0.00 0.00 3.09
171 172 4.701765 ACATGATCTTGTGCTAGGCTAAG 58.298 43.478 13.08 0.00 0.00 2.18
172 173 3.827008 TGATCTTGTGCTAGGCTAAGG 57.173 47.619 0.00 0.00 0.00 2.69
173 174 3.374764 TGATCTTGTGCTAGGCTAAGGA 58.625 45.455 0.00 0.00 0.00 3.36
174 175 3.969976 TGATCTTGTGCTAGGCTAAGGAT 59.030 43.478 0.00 0.00 0.00 3.24
175 176 4.410228 TGATCTTGTGCTAGGCTAAGGATT 59.590 41.667 0.00 0.00 0.00 3.01
176 177 4.142609 TCTTGTGCTAGGCTAAGGATTG 57.857 45.455 0.00 0.00 0.00 2.67
177 178 3.118261 TCTTGTGCTAGGCTAAGGATTGG 60.118 47.826 0.00 0.00 0.00 3.16
178 179 1.490490 TGTGCTAGGCTAAGGATTGGG 59.510 52.381 0.00 0.00 0.00 4.12
179 180 1.490910 GTGCTAGGCTAAGGATTGGGT 59.509 52.381 0.00 0.00 0.00 4.51
180 181 1.768870 TGCTAGGCTAAGGATTGGGTC 59.231 52.381 0.00 0.00 0.00 4.46
181 182 2.050918 GCTAGGCTAAGGATTGGGTCT 58.949 52.381 0.00 0.00 0.00 3.85
182 183 2.439880 GCTAGGCTAAGGATTGGGTCTT 59.560 50.000 0.00 0.00 0.00 3.01
183 184 3.117851 GCTAGGCTAAGGATTGGGTCTTT 60.118 47.826 0.00 0.00 0.00 2.52
184 185 3.372440 AGGCTAAGGATTGGGTCTTTG 57.628 47.619 0.00 0.00 0.00 2.77
185 186 2.649816 AGGCTAAGGATTGGGTCTTTGT 59.350 45.455 0.00 0.00 0.00 2.83
186 187 3.017442 GGCTAAGGATTGGGTCTTTGTC 58.983 50.000 0.00 0.00 0.00 3.18
187 188 3.017442 GCTAAGGATTGGGTCTTTGTCC 58.983 50.000 0.00 0.00 0.00 4.02
188 189 3.561313 GCTAAGGATTGGGTCTTTGTCCA 60.561 47.826 0.00 0.00 0.00 4.02
189 190 3.833559 AAGGATTGGGTCTTTGTCCAT 57.166 42.857 0.00 0.00 32.48 3.41
190 191 3.372440 AGGATTGGGTCTTTGTCCATC 57.628 47.619 0.00 0.00 32.48 3.51
191 192 2.649312 AGGATTGGGTCTTTGTCCATCA 59.351 45.455 0.00 0.00 32.48 3.07
192 193 2.755103 GGATTGGGTCTTTGTCCATCAC 59.245 50.000 0.00 0.00 32.48 3.06
193 194 3.420893 GATTGGGTCTTTGTCCATCACA 58.579 45.455 0.00 0.00 32.48 3.58
194 195 3.524095 TTGGGTCTTTGTCCATCACAT 57.476 42.857 0.00 0.00 33.90 3.21
195 196 3.071874 TGGGTCTTTGTCCATCACATC 57.928 47.619 0.00 0.00 33.90 3.06
196 197 2.374839 TGGGTCTTTGTCCATCACATCA 59.625 45.455 0.00 0.00 33.90 3.07
197 198 3.010472 TGGGTCTTTGTCCATCACATCAT 59.990 43.478 0.00 0.00 33.90 2.45
198 199 4.019174 GGGTCTTTGTCCATCACATCATT 58.981 43.478 0.00 0.00 33.90 2.57
199 200 4.096984 GGGTCTTTGTCCATCACATCATTC 59.903 45.833 0.00 0.00 33.90 2.67
200 201 4.946157 GGTCTTTGTCCATCACATCATTCT 59.054 41.667 0.00 0.00 33.90 2.40
201 202 5.065731 GGTCTTTGTCCATCACATCATTCTC 59.934 44.000 0.00 0.00 33.90 2.87
202 203 5.065731 GTCTTTGTCCATCACATCATTCTCC 59.934 44.000 0.00 0.00 33.90 3.71
203 204 4.849813 TTGTCCATCACATCATTCTCCT 57.150 40.909 0.00 0.00 33.90 3.69
204 205 5.955961 TTGTCCATCACATCATTCTCCTA 57.044 39.130 0.00 0.00 33.90 2.94
205 206 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
206 207 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
207 208 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
208 209 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
209 210 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
217 218 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
218 219 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
219 220 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
220 221 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
221 222 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
222 223 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
223 224 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
224 225 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
225 226 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
226 227 6.881065 CCTAATGATGTGATCCCGTTATCAAT 59.119 38.462 0.00 0.00 37.61 2.57
227 228 6.564709 AATGATGTGATCCCGTTATCAATG 57.435 37.500 0.00 0.00 37.61 2.82
228 229 5.289083 TGATGTGATCCCGTTATCAATGA 57.711 39.130 0.00 0.00 37.61 2.57
229 230 5.056480 TGATGTGATCCCGTTATCAATGAC 58.944 41.667 0.00 0.00 37.61 3.06
230 231 4.479786 TGTGATCCCGTTATCAATGACA 57.520 40.909 0.00 0.00 37.61 3.58
231 232 5.034852 TGTGATCCCGTTATCAATGACAT 57.965 39.130 0.00 0.00 37.61 3.06
232 233 5.056480 TGTGATCCCGTTATCAATGACATC 58.944 41.667 0.00 0.00 37.61 3.06
233 234 4.452455 GTGATCCCGTTATCAATGACATCC 59.548 45.833 0.00 0.00 37.61 3.51
234 235 4.102367 TGATCCCGTTATCAATGACATCCA 59.898 41.667 0.00 0.00 32.97 3.41
235 236 4.495690 TCCCGTTATCAATGACATCCAA 57.504 40.909 0.00 0.00 0.00 3.53
236 237 5.047566 TCCCGTTATCAATGACATCCAAT 57.952 39.130 0.00 0.00 0.00 3.16
237 238 4.821260 TCCCGTTATCAATGACATCCAATG 59.179 41.667 0.00 0.00 0.00 2.82
248 249 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
249 250 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
250 251 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
251 252 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
252 253 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
253 254 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
254 255 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
255 256 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
256 257 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
257 258 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
258 259 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
259 260 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
260 261 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
261 262 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
262 263 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
263 264 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
264 265 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
265 266 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
266 267 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
267 268 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
268 269 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
269 270 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
270 271 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
271 272 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
272 273 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
273 274 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
274 275 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
275 276 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
276 277 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
277 278 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
278 279 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
279 280 4.679373 ACCATCTATTGATCAACGAGCT 57.321 40.909 11.07 0.00 0.00 4.09
280 281 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
281 282 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
282 283 5.303078 ACCATCTATTGATCAACGAGCTAGT 59.697 40.000 11.07 6.23 0.00 2.57
283 284 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
284 285 6.442112 CATCTATTGATCAACGAGCTAGTCA 58.558 40.000 11.07 0.00 0.00 3.41
285 286 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
286 287 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
287 288 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
288 289 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
289 290 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
290 291 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
291 292 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
292 293 4.576879 TCAACGAGCTAGTCAACTAGAGA 58.423 43.478 19.03 5.48 46.80 3.10
293 294 4.392445 TCAACGAGCTAGTCAACTAGAGAC 59.608 45.833 19.03 4.30 46.80 3.36
294 295 4.210724 ACGAGCTAGTCAACTAGAGACT 57.789 45.455 19.03 20.58 46.80 3.24
295 296 4.581868 ACGAGCTAGTCAACTAGAGACTT 58.418 43.478 21.49 9.20 46.80 3.01
296 297 5.732633 ACGAGCTAGTCAACTAGAGACTTA 58.267 41.667 21.49 10.94 46.80 2.24
297 298 5.581874 ACGAGCTAGTCAACTAGAGACTTAC 59.418 44.000 21.49 15.66 46.80 2.34
298 299 5.813672 CGAGCTAGTCAACTAGAGACTTACT 59.186 44.000 21.49 18.71 46.80 2.24
299 300 6.979817 CGAGCTAGTCAACTAGAGACTTACTA 59.020 42.308 21.49 8.29 46.80 1.82
300 301 7.168637 CGAGCTAGTCAACTAGAGACTTACTAG 59.831 44.444 21.49 15.57 46.80 2.57
301 302 7.277396 AGCTAGTCAACTAGAGACTTACTAGG 58.723 42.308 21.49 10.54 46.80 3.02
302 303 6.484308 GCTAGTCAACTAGAGACTTACTAGGG 59.516 46.154 21.49 9.39 46.80 3.53
303 304 6.391479 AGTCAACTAGAGACTTACTAGGGT 57.609 41.667 14.14 0.00 43.47 4.34
304 305 6.417258 AGTCAACTAGAGACTTACTAGGGTC 58.583 44.000 14.14 0.00 43.47 4.46
305 306 6.012683 AGTCAACTAGAGACTTACTAGGGTCA 60.013 42.308 14.14 0.00 43.47 4.02
306 307 6.829811 GTCAACTAGAGACTTACTAGGGTCAT 59.170 42.308 0.00 5.97 40.86 3.06
307 308 6.829298 TCAACTAGAGACTTACTAGGGTCATG 59.171 42.308 0.00 0.00 40.86 3.07
308 309 5.697067 ACTAGAGACTTACTAGGGTCATGG 58.303 45.833 0.00 7.29 40.86 3.66
309 310 4.611564 AGAGACTTACTAGGGTCATGGT 57.388 45.455 12.80 0.00 35.18 3.55
310 311 4.282496 AGAGACTTACTAGGGTCATGGTG 58.718 47.826 12.80 0.00 35.18 4.17
311 312 4.024670 GAGACTTACTAGGGTCATGGTGT 58.975 47.826 12.80 0.00 35.18 4.16
312 313 4.426704 AGACTTACTAGGGTCATGGTGTT 58.573 43.478 12.80 0.00 35.18 3.32
313 314 4.223032 AGACTTACTAGGGTCATGGTGTTG 59.777 45.833 12.80 0.00 35.18 3.33
314 315 3.908103 ACTTACTAGGGTCATGGTGTTGT 59.092 43.478 0.00 0.00 0.00 3.32
315 316 4.020485 ACTTACTAGGGTCATGGTGTTGTC 60.020 45.833 0.00 0.00 0.00 3.18
316 317 2.621070 ACTAGGGTCATGGTGTTGTCT 58.379 47.619 0.00 0.00 0.00 3.41
317 318 3.786553 ACTAGGGTCATGGTGTTGTCTA 58.213 45.455 0.00 0.00 0.00 2.59
318 319 4.362677 ACTAGGGTCATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 0.00 1.98
319 320 3.634397 AGGGTCATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 0.00 2.23
320 321 2.912956 AGGGTCATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 0.00 2.29
321 322 4.101114 AGGGTCATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 0.00 2.29
322 323 4.721776 AGGGTCATGGTGTTGTCTATGTAT 59.278 41.667 0.00 0.00 0.00 2.29
323 324 5.057149 GGGTCATGGTGTTGTCTATGTATC 58.943 45.833 0.00 0.00 0.00 2.24
324 325 5.057149 GGTCATGGTGTTGTCTATGTATCC 58.943 45.833 0.00 0.00 0.00 2.59
325 326 5.396324 GGTCATGGTGTTGTCTATGTATCCA 60.396 44.000 0.00 0.00 0.00 3.41
326 327 5.523916 GTCATGGTGTTGTCTATGTATCCAC 59.476 44.000 0.00 0.00 0.00 4.02
327 328 5.188751 TCATGGTGTTGTCTATGTATCCACA 59.811 40.000 0.00 0.00 39.52 4.17
328 329 4.827692 TGGTGTTGTCTATGTATCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
329 330 4.284746 TGGTGTTGTCTATGTATCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
330 331 5.045942 TGGTGTTGTCTATGTATCCACACAT 60.046 40.000 0.00 0.00 41.88 3.21
331 332 5.294306 GGTGTTGTCTATGTATCCACACATG 59.706 44.000 0.00 0.00 39.46 3.21
332 333 5.874810 GTGTTGTCTATGTATCCACACATGT 59.125 40.000 0.00 0.00 39.46 3.21
333 334 7.039270 GTGTTGTCTATGTATCCACACATGTA 58.961 38.462 0.00 0.00 39.46 2.29
334 335 7.710907 GTGTTGTCTATGTATCCACACATGTAT 59.289 37.037 0.00 0.00 39.46 2.29
335 336 7.926018 TGTTGTCTATGTATCCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
336 337 7.839680 TGTCTATGTATCCACACATGTATCT 57.160 36.000 0.00 0.00 39.46 1.98
337 338 7.661040 TGTCTATGTATCCACACATGTATCTG 58.339 38.462 0.00 0.00 39.46 2.90
338 339 7.505585 TGTCTATGTATCCACACATGTATCTGA 59.494 37.037 0.00 0.00 39.46 3.27
339 340 8.026026 GTCTATGTATCCACACATGTATCTGAG 58.974 40.741 0.00 0.00 39.46 3.35
340 341 6.737720 ATGTATCCACACATGTATCTGAGT 57.262 37.500 0.00 0.00 37.74 3.41
341 342 6.544928 TGTATCCACACATGTATCTGAGTT 57.455 37.500 0.00 0.00 0.00 3.01
342 343 6.946340 TGTATCCACACATGTATCTGAGTTT 58.054 36.000 0.00 0.00 0.00 2.66
343 344 7.041721 TGTATCCACACATGTATCTGAGTTTC 58.958 38.462 0.00 0.00 0.00 2.78
344 345 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
345 346 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
346 347 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
347 348 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
348 349 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
349 350 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
350 351 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
351 352 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
352 353 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
353 354 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
354 355 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
362 363 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
363 364 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
366 367 8.853077 TTCCTATCAATACAATTCTAGCATGG 57.147 34.615 0.00 0.00 0.00 3.66
367 368 8.206126 TCCTATCAATACAATTCTAGCATGGA 57.794 34.615 0.00 0.00 0.00 3.41
368 369 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
377 378 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
378 379 9.507329 ACAATTCTAGCATGGATAATAAACGAT 57.493 29.630 0.00 0.00 0.00 3.73
428 429 6.966534 AACCAATTTATCATTGCCTCTAGG 57.033 37.500 0.00 0.00 38.53 3.02
429 430 5.388654 ACCAATTTATCATTGCCTCTAGGG 58.611 41.667 0.00 0.00 35.18 3.53
505 506 1.871080 CTTGCGACTGGAGTGAAGTT 58.129 50.000 0.00 0.00 0.00 2.66
533 534 0.893447 GTAGCCGTACTGGAAGGTGT 59.107 55.000 7.77 0.00 42.00 4.16
536 537 2.055299 CCGTACTGGAAGGTGTGGT 58.945 57.895 0.00 0.00 42.00 4.16
741 742 7.741554 ATTAGTTGATAGTGATAGGATCCCC 57.258 40.000 8.55 0.00 0.00 4.81
796 797 0.176449 GGCATGGGGATGTCAAAAGC 59.824 55.000 0.00 0.00 0.00 3.51
871 872 1.149964 GCGCGACGGGTTATTAGCTT 61.150 55.000 12.10 0.00 0.00 3.74
1005 1006 0.818938 CAAGGCACATTAGCATGGCA 59.181 50.000 0.00 0.00 43.55 4.92
1054 1055 4.095782 TGAAACCAAACAAACTTCTCCTCG 59.904 41.667 0.00 0.00 0.00 4.63
1273 1280 1.512926 ACGCATCTTCACAGACCAAC 58.487 50.000 0.00 0.00 0.00 3.77
1279 1286 4.697352 GCATCTTCACAGACCAACAACTAT 59.303 41.667 0.00 0.00 0.00 2.12
1447 1454 1.134401 TCCTTAAATGGGAGCAGAGCG 60.134 52.381 0.00 0.00 0.00 5.03
1638 1645 0.761802 GGGAAGGATGAATCGCTCCT 59.238 55.000 0.00 0.00 43.86 3.69
1790 1798 3.525537 ACTCTTTCATGCATACTCCACG 58.474 45.455 0.00 0.00 0.00 4.94
1887 1895 3.808174 GTCTAATTGTCCAGGCGGTAATC 59.192 47.826 0.00 0.00 0.00 1.75
1957 1965 3.350833 GAAGAGGACTGAAACATGCCAT 58.649 45.455 0.00 0.00 0.00 4.40
2073 2081 2.029623 GATAGTTGGAGTCGGTGGCTA 58.970 52.381 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.831702 AAGGTACACTACAAGTATCTCCG 57.168 43.478 0.00 0.00 31.95 4.63
2 3 9.896263 GCTATAAAGGTACACTACAAGTATCTC 57.104 37.037 0.00 0.00 31.95 2.75
3 4 8.858094 GGCTATAAAGGTACACTACAAGTATCT 58.142 37.037 0.00 0.00 34.50 1.98
4 5 8.636213 TGGCTATAAAGGTACACTACAAGTATC 58.364 37.037 0.00 0.00 0.00 2.24
5 6 8.419442 GTGGCTATAAAGGTACACTACAAGTAT 58.581 37.037 0.00 0.00 0.00 2.12
6 7 7.147846 GGTGGCTATAAAGGTACACTACAAGTA 60.148 40.741 0.00 0.00 0.00 2.24
7 8 6.351626 GGTGGCTATAAAGGTACACTACAAGT 60.352 42.308 0.00 0.00 0.00 3.16
8 9 6.047231 GGTGGCTATAAAGGTACACTACAAG 58.953 44.000 0.00 0.00 0.00 3.16
9 10 5.104817 GGGTGGCTATAAAGGTACACTACAA 60.105 44.000 0.00 0.00 0.00 2.41
10 11 4.406649 GGGTGGCTATAAAGGTACACTACA 59.593 45.833 0.00 0.00 0.00 2.74
11 12 4.406649 TGGGTGGCTATAAAGGTACACTAC 59.593 45.833 0.00 0.00 0.00 2.73
12 13 4.622815 TGGGTGGCTATAAAGGTACACTA 58.377 43.478 0.00 0.00 0.00 2.74
13 14 3.454812 CTGGGTGGCTATAAAGGTACACT 59.545 47.826 0.00 0.00 0.00 3.55
14 15 3.199289 ACTGGGTGGCTATAAAGGTACAC 59.801 47.826 0.00 0.00 0.00 2.90
15 16 3.456842 ACTGGGTGGCTATAAAGGTACA 58.543 45.455 0.00 0.00 0.00 2.90
16 17 4.498894 AACTGGGTGGCTATAAAGGTAC 57.501 45.455 0.00 0.00 0.00 3.34
17 18 4.099881 CGTAACTGGGTGGCTATAAAGGTA 59.900 45.833 0.00 0.00 0.00 3.08
18 19 3.118519 CGTAACTGGGTGGCTATAAAGGT 60.119 47.826 0.00 0.00 0.00 3.50
19 20 3.118519 ACGTAACTGGGTGGCTATAAAGG 60.119 47.826 0.00 0.00 0.00 3.11
20 21 4.133013 ACGTAACTGGGTGGCTATAAAG 57.867 45.455 0.00 0.00 0.00 1.85
21 22 4.255301 CAACGTAACTGGGTGGCTATAAA 58.745 43.478 0.00 0.00 0.00 1.40
22 23 3.261390 ACAACGTAACTGGGTGGCTATAA 59.739 43.478 0.00 0.00 0.00 0.98
23 24 2.833338 ACAACGTAACTGGGTGGCTATA 59.167 45.455 0.00 0.00 0.00 1.31
24 25 1.626825 ACAACGTAACTGGGTGGCTAT 59.373 47.619 0.00 0.00 0.00 2.97
25 26 1.050204 ACAACGTAACTGGGTGGCTA 58.950 50.000 0.00 0.00 0.00 3.93
26 27 0.534203 CACAACGTAACTGGGTGGCT 60.534 55.000 0.00 0.00 0.00 4.75
27 28 0.533308 TCACAACGTAACTGGGTGGC 60.533 55.000 0.00 0.00 0.00 5.01
28 29 1.223187 GTCACAACGTAACTGGGTGG 58.777 55.000 0.00 0.00 0.00 4.61
29 30 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
30 31 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
40 41 0.524604 GGTGTGCCAAACGTCACAAC 60.525 55.000 9.13 8.22 43.78 3.32
41 42 1.658686 GGGTGTGCCAAACGTCACAA 61.659 55.000 9.13 0.00 43.78 3.33
42 43 2.115911 GGGTGTGCCAAACGTCACA 61.116 57.895 3.87 3.87 40.50 3.58
43 44 1.658686 TTGGGTGTGCCAAACGTCAC 61.659 55.000 0.00 0.00 36.17 3.67
44 45 0.965866 TTTGGGTGTGCCAAACGTCA 60.966 50.000 0.00 0.00 36.17 4.35
45 46 0.248866 CTTTGGGTGTGCCAAACGTC 60.249 55.000 0.00 0.00 34.15 4.34
46 47 1.813192 CTTTGGGTGTGCCAAACGT 59.187 52.632 0.00 0.00 34.15 3.99
47 48 1.591327 GCTTTGGGTGTGCCAAACG 60.591 57.895 0.00 0.00 34.15 3.60
48 49 0.809636 GTGCTTTGGGTGTGCCAAAC 60.810 55.000 0.00 0.00 34.15 2.93
49 50 0.975040 AGTGCTTTGGGTGTGCCAAA 60.975 50.000 0.00 0.00 36.06 3.28
50 51 1.381056 AGTGCTTTGGGTGTGCCAA 60.381 52.632 0.00 0.00 36.17 4.52
51 52 1.827789 GAGTGCTTTGGGTGTGCCA 60.828 57.895 0.00 0.00 36.17 4.92
52 53 2.564721 GGAGTGCTTTGGGTGTGCC 61.565 63.158 0.00 0.00 0.00 5.01
53 54 0.250727 TAGGAGTGCTTTGGGTGTGC 60.251 55.000 0.00 0.00 0.00 4.57
54 55 1.523758 GTAGGAGTGCTTTGGGTGTG 58.476 55.000 0.00 0.00 0.00 3.82
55 56 0.034896 CGTAGGAGTGCTTTGGGTGT 59.965 55.000 0.00 0.00 0.00 4.16
56 57 2.840974 CGTAGGAGTGCTTTGGGTG 58.159 57.895 0.00 0.00 0.00 4.61
70 71 1.754803 TGCAACTCCTGGATACCGTAG 59.245 52.381 0.00 0.00 0.00 3.51
71 72 1.479323 GTGCAACTCCTGGATACCGTA 59.521 52.381 0.00 0.00 0.00 4.02
72 73 0.249398 GTGCAACTCCTGGATACCGT 59.751 55.000 0.00 0.00 0.00 4.83
73 74 0.249120 TGTGCAACTCCTGGATACCG 59.751 55.000 0.00 0.00 38.04 4.02
74 75 2.489938 TTGTGCAACTCCTGGATACC 57.510 50.000 0.00 0.00 38.04 2.73
75 76 3.873952 GAGATTGTGCAACTCCTGGATAC 59.126 47.826 0.00 0.00 38.04 2.24
76 77 3.519107 TGAGATTGTGCAACTCCTGGATA 59.481 43.478 0.00 0.00 38.04 2.59
77 78 2.306805 TGAGATTGTGCAACTCCTGGAT 59.693 45.455 0.00 0.00 38.04 3.41
78 79 1.699083 TGAGATTGTGCAACTCCTGGA 59.301 47.619 0.00 0.00 38.04 3.86
79 80 2.189594 TGAGATTGTGCAACTCCTGG 57.810 50.000 0.00 0.00 38.04 4.45
80 81 2.422479 CCATGAGATTGTGCAACTCCTG 59.578 50.000 0.00 0.00 38.04 3.86
81 82 2.040813 ACCATGAGATTGTGCAACTCCT 59.959 45.455 0.00 0.00 38.04 3.69
82 83 2.421424 GACCATGAGATTGTGCAACTCC 59.579 50.000 0.00 0.00 38.04 3.85
83 84 3.341823 AGACCATGAGATTGTGCAACTC 58.658 45.455 0.00 0.00 38.04 3.01
84 85 3.430042 AGACCATGAGATTGTGCAACT 57.570 42.857 0.00 0.00 38.04 3.16
85 86 4.095483 CCTTAGACCATGAGATTGTGCAAC 59.905 45.833 0.00 0.00 37.35 4.17
86 87 4.019411 TCCTTAGACCATGAGATTGTGCAA 60.019 41.667 0.00 0.00 0.00 4.08
87 88 3.519107 TCCTTAGACCATGAGATTGTGCA 59.481 43.478 0.00 0.00 0.00 4.57
88 89 4.142609 TCCTTAGACCATGAGATTGTGC 57.857 45.455 0.00 0.00 0.00 4.57
89 90 6.825213 TCATTTCCTTAGACCATGAGATTGTG 59.175 38.462 0.00 0.00 0.00 3.33
90 91 6.962182 TCATTTCCTTAGACCATGAGATTGT 58.038 36.000 0.00 0.00 0.00 2.71
91 92 8.997323 GTATCATTTCCTTAGACCATGAGATTG 58.003 37.037 0.00 0.00 29.44 2.67
92 93 8.943085 AGTATCATTTCCTTAGACCATGAGATT 58.057 33.333 0.00 0.00 29.44 2.40
93 94 8.503428 AGTATCATTTCCTTAGACCATGAGAT 57.497 34.615 0.00 0.00 29.44 2.75
94 95 7.921041 AGTATCATTTCCTTAGACCATGAGA 57.079 36.000 0.00 0.00 29.44 3.27
95 96 8.206867 TCAAGTATCATTTCCTTAGACCATGAG 58.793 37.037 0.00 0.00 29.44 2.90
96 97 7.987458 GTCAAGTATCATTTCCTTAGACCATGA 59.013 37.037 0.00 0.00 0.00 3.07
97 98 7.770433 TGTCAAGTATCATTTCCTTAGACCATG 59.230 37.037 0.00 0.00 0.00 3.66
98 99 7.861629 TGTCAAGTATCATTTCCTTAGACCAT 58.138 34.615 0.00 0.00 0.00 3.55
99 100 7.252612 TGTCAAGTATCATTTCCTTAGACCA 57.747 36.000 0.00 0.00 0.00 4.02
100 101 8.738645 AATGTCAAGTATCATTTCCTTAGACC 57.261 34.615 0.00 0.00 31.35 3.85
107 108 9.508567 GCTTTTCTAATGTCAAGTATCATTTCC 57.491 33.333 0.00 0.00 36.06 3.13
113 114 9.709600 GCTAAAGCTTTTCTAATGTCAAGTATC 57.290 33.333 18.47 0.00 38.21 2.24
114 115 9.231297 TGCTAAAGCTTTTCTAATGTCAAGTAT 57.769 29.630 18.47 0.00 42.66 2.12
115 116 8.615878 TGCTAAAGCTTTTCTAATGTCAAGTA 57.384 30.769 18.47 0.96 42.66 2.24
116 117 7.510549 TGCTAAAGCTTTTCTAATGTCAAGT 57.489 32.000 18.47 0.00 42.66 3.16
117 118 9.495754 GTATGCTAAAGCTTTTCTAATGTCAAG 57.504 33.333 18.47 5.49 42.66 3.02
118 119 8.175069 CGTATGCTAAAGCTTTTCTAATGTCAA 58.825 33.333 18.47 0.00 42.66 3.18
119 120 7.547722 TCGTATGCTAAAGCTTTTCTAATGTCA 59.452 33.333 18.47 4.72 42.66 3.58
120 121 7.906160 TCGTATGCTAAAGCTTTTCTAATGTC 58.094 34.615 18.47 1.59 42.66 3.06
121 122 7.843490 TCGTATGCTAAAGCTTTTCTAATGT 57.157 32.000 18.47 0.66 42.66 2.71
122 123 8.391106 AGTTCGTATGCTAAAGCTTTTCTAATG 58.609 33.333 18.47 5.69 42.66 1.90
123 124 8.494016 AGTTCGTATGCTAAAGCTTTTCTAAT 57.506 30.769 18.47 8.96 42.66 1.73
124 125 7.900782 AGTTCGTATGCTAAAGCTTTTCTAA 57.099 32.000 18.47 0.00 42.66 2.10
125 126 8.030692 TGTAGTTCGTATGCTAAAGCTTTTCTA 58.969 33.333 18.47 4.25 42.66 2.10
126 127 6.872020 TGTAGTTCGTATGCTAAAGCTTTTCT 59.128 34.615 18.47 2.60 42.66 2.52
127 128 7.057149 TGTAGTTCGTATGCTAAAGCTTTTC 57.943 36.000 18.47 10.34 42.66 2.29
128 129 7.333423 TCATGTAGTTCGTATGCTAAAGCTTTT 59.667 33.333 18.47 1.19 42.66 2.27
129 130 6.816640 TCATGTAGTTCGTATGCTAAAGCTTT 59.183 34.615 17.30 17.30 42.66 3.51
130 131 6.338146 TCATGTAGTTCGTATGCTAAAGCTT 58.662 36.000 3.26 0.00 42.66 3.74
131 132 5.902681 TCATGTAGTTCGTATGCTAAAGCT 58.097 37.500 3.26 0.00 42.66 3.74
132 133 6.642950 AGATCATGTAGTTCGTATGCTAAAGC 59.357 38.462 0.00 0.00 42.50 3.51
133 134 8.483218 CAAGATCATGTAGTTCGTATGCTAAAG 58.517 37.037 0.00 0.00 0.00 1.85
134 135 7.979537 ACAAGATCATGTAGTTCGTATGCTAAA 59.020 33.333 0.80 0.00 0.00 1.85
135 136 7.435192 CACAAGATCATGTAGTTCGTATGCTAA 59.565 37.037 2.77 0.00 30.84 3.09
136 137 6.918022 CACAAGATCATGTAGTTCGTATGCTA 59.082 38.462 2.77 0.00 30.84 3.49
137 138 5.750547 CACAAGATCATGTAGTTCGTATGCT 59.249 40.000 2.77 0.00 30.84 3.79
138 139 5.557136 GCACAAGATCATGTAGTTCGTATGC 60.557 44.000 2.77 0.00 30.84 3.14
139 140 5.750547 AGCACAAGATCATGTAGTTCGTATG 59.249 40.000 2.77 0.00 30.84 2.39
140 141 5.907207 AGCACAAGATCATGTAGTTCGTAT 58.093 37.500 2.77 0.00 30.84 3.06
141 142 5.324784 AGCACAAGATCATGTAGTTCGTA 57.675 39.130 2.77 0.00 30.84 3.43
142 143 4.193826 AGCACAAGATCATGTAGTTCGT 57.806 40.909 2.77 0.00 30.84 3.85
143 144 4.742167 CCTAGCACAAGATCATGTAGTTCG 59.258 45.833 2.77 0.00 30.84 3.95
144 145 4.509600 GCCTAGCACAAGATCATGTAGTTC 59.490 45.833 2.77 0.00 30.84 3.01
145 146 4.163078 AGCCTAGCACAAGATCATGTAGTT 59.837 41.667 2.77 0.08 30.84 2.24
146 147 3.708631 AGCCTAGCACAAGATCATGTAGT 59.291 43.478 2.77 0.00 30.84 2.73
147 148 4.333913 AGCCTAGCACAAGATCATGTAG 57.666 45.455 2.77 0.00 30.84 2.74
148 149 5.221521 CCTTAGCCTAGCACAAGATCATGTA 60.222 44.000 2.77 0.00 30.84 2.29
149 150 4.444022 CCTTAGCCTAGCACAAGATCATGT 60.444 45.833 0.00 0.00 0.00 3.21
150 151 4.063689 CCTTAGCCTAGCACAAGATCATG 58.936 47.826 0.00 0.00 0.00 3.07
151 152 3.969976 TCCTTAGCCTAGCACAAGATCAT 59.030 43.478 0.00 0.00 0.00 2.45
152 153 3.374764 TCCTTAGCCTAGCACAAGATCA 58.625 45.455 0.00 0.00 0.00 2.92
153 154 4.615588 ATCCTTAGCCTAGCACAAGATC 57.384 45.455 3.37 0.00 0.00 2.75
154 155 4.445448 CCAATCCTTAGCCTAGCACAAGAT 60.445 45.833 3.37 0.00 0.00 2.40
155 156 3.118261 CCAATCCTTAGCCTAGCACAAGA 60.118 47.826 3.37 0.00 0.00 3.02
156 157 3.209410 CCAATCCTTAGCCTAGCACAAG 58.791 50.000 0.00 0.00 0.00 3.16
157 158 2.092429 CCCAATCCTTAGCCTAGCACAA 60.092 50.000 0.00 0.00 0.00 3.33
158 159 1.490490 CCCAATCCTTAGCCTAGCACA 59.510 52.381 0.00 0.00 0.00 4.57
159 160 1.490910 ACCCAATCCTTAGCCTAGCAC 59.509 52.381 0.00 0.00 0.00 4.40
160 161 1.768870 GACCCAATCCTTAGCCTAGCA 59.231 52.381 0.00 0.00 0.00 3.49
161 162 2.050918 AGACCCAATCCTTAGCCTAGC 58.949 52.381 0.00 0.00 0.00 3.42
162 163 4.080299 ACAAAGACCCAATCCTTAGCCTAG 60.080 45.833 0.00 0.00 0.00 3.02
163 164 3.850173 ACAAAGACCCAATCCTTAGCCTA 59.150 43.478 0.00 0.00 0.00 3.93
164 165 2.649816 ACAAAGACCCAATCCTTAGCCT 59.350 45.455 0.00 0.00 0.00 4.58
165 166 3.017442 GACAAAGACCCAATCCTTAGCC 58.983 50.000 0.00 0.00 0.00 3.93
166 167 3.017442 GGACAAAGACCCAATCCTTAGC 58.983 50.000 0.00 0.00 0.00 3.09
167 168 4.301072 TGGACAAAGACCCAATCCTTAG 57.699 45.455 0.00 0.00 0.00 2.18
168 169 4.290985 TGATGGACAAAGACCCAATCCTTA 59.709 41.667 0.00 0.00 35.85 2.69
169 170 3.075882 TGATGGACAAAGACCCAATCCTT 59.924 43.478 0.00 0.00 35.85 3.36
170 171 2.649312 TGATGGACAAAGACCCAATCCT 59.351 45.455 0.00 0.00 35.85 3.24
171 172 2.755103 GTGATGGACAAAGACCCAATCC 59.245 50.000 0.00 0.00 35.85 3.01
172 173 3.420893 TGTGATGGACAAAGACCCAATC 58.579 45.455 0.00 0.00 35.85 2.67
173 174 3.524095 TGTGATGGACAAAGACCCAAT 57.476 42.857 0.00 0.00 35.85 3.16
174 175 3.181435 TGATGTGATGGACAAAGACCCAA 60.181 43.478 0.00 0.00 38.36 4.12
175 176 2.374839 TGATGTGATGGACAAAGACCCA 59.625 45.455 0.00 0.00 38.36 4.51
176 177 3.071874 TGATGTGATGGACAAAGACCC 57.928 47.619 0.00 0.00 38.36 4.46
177 178 4.946157 AGAATGATGTGATGGACAAAGACC 59.054 41.667 0.00 0.00 38.36 3.85
178 179 5.065731 GGAGAATGATGTGATGGACAAAGAC 59.934 44.000 0.00 0.00 38.36 3.01
179 180 5.045359 AGGAGAATGATGTGATGGACAAAGA 60.045 40.000 0.00 0.00 38.36 2.52
180 181 5.191426 AGGAGAATGATGTGATGGACAAAG 58.809 41.667 0.00 0.00 38.36 2.77
181 182 5.183530 AGGAGAATGATGTGATGGACAAA 57.816 39.130 0.00 0.00 38.36 2.83
182 183 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
183 184 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
184 185 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
185 186 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
193 194 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
194 195 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
195 196 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
196 197 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
197 198 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
198 199 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
199 200 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
200 201 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
201 202 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
202 203 7.603784 TCATTGATAACGGGATCACATCATTAG 59.396 37.037 0.00 0.00 35.56 1.73
203 204 7.387673 GTCATTGATAACGGGATCACATCATTA 59.612 37.037 0.00 0.00 35.56 1.90
204 205 6.205464 GTCATTGATAACGGGATCACATCATT 59.795 38.462 0.00 0.00 35.56 2.57
205 206 5.702670 GTCATTGATAACGGGATCACATCAT 59.297 40.000 0.00 0.00 35.56 2.45
206 207 5.056480 GTCATTGATAACGGGATCACATCA 58.944 41.667 0.00 0.00 35.56 3.07
207 208 5.056480 TGTCATTGATAACGGGATCACATC 58.944 41.667 0.00 0.00 35.56 3.06
208 209 5.034852 TGTCATTGATAACGGGATCACAT 57.965 39.130 0.00 0.00 35.56 3.21
209 210 4.479786 TGTCATTGATAACGGGATCACA 57.520 40.909 0.00 0.00 35.56 3.58
210 211 4.452455 GGATGTCATTGATAACGGGATCAC 59.548 45.833 0.00 0.00 35.56 3.06
211 212 4.102367 TGGATGTCATTGATAACGGGATCA 59.898 41.667 0.00 0.00 33.96 2.92
212 213 4.641396 TGGATGTCATTGATAACGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
213 214 4.705110 TGGATGTCATTGATAACGGGAT 57.295 40.909 0.00 0.00 0.00 3.85
214 215 4.495690 TTGGATGTCATTGATAACGGGA 57.504 40.909 0.00 0.00 0.00 5.14
215 216 4.580167 ACATTGGATGTCATTGATAACGGG 59.420 41.667 0.00 0.00 39.92 5.28
216 217 5.756195 ACATTGGATGTCATTGATAACGG 57.244 39.130 0.00 0.00 39.92 4.44
229 230 2.092267 TCCTGACCATGGACATTGGATG 60.092 50.000 21.47 5.31 0.00 3.51
230 231 2.207988 TCCTGACCATGGACATTGGAT 58.792 47.619 21.47 0.00 0.00 3.41
231 232 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
232 233 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
233 234 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
234 235 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
235 236 1.340017 CGGTTTCCTGACCATGGACAT 60.340 52.381 21.47 0.00 39.78 3.06
236 237 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
237 238 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
238 239 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
239 240 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
240 241 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
241 242 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
242 243 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
243 244 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
244 245 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
245 246 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
246 247 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
247 248 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
248 249 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
249 250 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
250 251 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
251 252 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
252 253 5.047847 CGTTGATCAATAGATGGTTACGGT 58.952 41.667 12.12 0.00 33.72 4.83
253 254 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
254 255 5.107837 GCTCGTTGATCAATAGATGGTTACG 60.108 44.000 19.51 12.22 33.72 3.18
255 256 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
256 257 6.161855 AGCTCGTTGATCAATAGATGGTTA 57.838 37.500 19.51 0.00 33.72 2.85
257 258 5.028549 AGCTCGTTGATCAATAGATGGTT 57.971 39.130 19.51 6.05 33.72 3.67
258 259 4.679373 AGCTCGTTGATCAATAGATGGT 57.321 40.909 19.51 14.02 33.72 3.55
259 260 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
260 261 6.442112 TGACTAGCTCGTTGATCAATAGATG 58.558 40.000 19.51 12.48 33.72 2.90
261 262 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
262 263 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
263 264 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
264 265 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
265 266 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
266 267 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
267 268 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
268 269 5.294799 TCTCTAGTTGACTAGCTCGTTGATC 59.705 44.000 12.30 0.00 44.24 2.92
269 270 5.065474 GTCTCTAGTTGACTAGCTCGTTGAT 59.935 44.000 12.30 0.00 44.24 2.57
270 271 4.392445 GTCTCTAGTTGACTAGCTCGTTGA 59.608 45.833 12.30 2.97 44.24 3.18
271 272 4.393680 AGTCTCTAGTTGACTAGCTCGTTG 59.606 45.833 15.73 1.13 44.24 4.10
272 273 4.581868 AGTCTCTAGTTGACTAGCTCGTT 58.418 43.478 15.73 0.00 44.24 3.85
273 274 4.210724 AGTCTCTAGTTGACTAGCTCGT 57.789 45.455 15.73 0.00 44.24 4.18
274 275 5.813672 AGTAAGTCTCTAGTTGACTAGCTCG 59.186 44.000 16.97 0.00 43.16 5.03
275 276 7.440255 CCTAGTAAGTCTCTAGTTGACTAGCTC 59.560 44.444 16.97 6.26 43.16 4.09
276 277 7.277396 CCTAGTAAGTCTCTAGTTGACTAGCT 58.723 42.308 16.97 17.66 43.16 3.32
277 278 6.484308 CCCTAGTAAGTCTCTAGTTGACTAGC 59.516 46.154 16.97 13.52 43.16 3.42
278 279 7.567458 ACCCTAGTAAGTCTCTAGTTGACTAG 58.433 42.308 16.97 11.14 43.16 2.57
279 280 7.181665 TGACCCTAGTAAGTCTCTAGTTGACTA 59.818 40.741 16.97 5.60 43.16 2.59
280 281 6.012683 TGACCCTAGTAAGTCTCTAGTTGACT 60.013 42.308 12.88 12.88 45.55 3.41
281 282 6.179040 TGACCCTAGTAAGTCTCTAGTTGAC 58.821 44.000 9.51 9.51 34.72 3.18
282 283 6.384342 TGACCCTAGTAAGTCTCTAGTTGA 57.616 41.667 6.42 0.00 34.72 3.18
283 284 6.039941 CCATGACCCTAGTAAGTCTCTAGTTG 59.960 46.154 0.00 0.00 34.72 3.16
284 285 6.130569 CCATGACCCTAGTAAGTCTCTAGTT 58.869 44.000 0.00 0.00 34.72 2.24
285 286 5.194132 ACCATGACCCTAGTAAGTCTCTAGT 59.806 44.000 0.00 0.00 34.72 2.57
286 287 5.533154 CACCATGACCCTAGTAAGTCTCTAG 59.467 48.000 0.00 0.00 35.86 2.43
287 288 5.044328 ACACCATGACCCTAGTAAGTCTCTA 60.044 44.000 0.00 0.00 34.02 2.43
288 289 4.264442 ACACCATGACCCTAGTAAGTCTCT 60.264 45.833 0.00 0.00 34.02 3.10
289 290 4.024670 ACACCATGACCCTAGTAAGTCTC 58.975 47.826 0.00 0.00 34.02 3.36
290 291 4.062490 ACACCATGACCCTAGTAAGTCT 57.938 45.455 0.00 0.00 34.02 3.24
291 292 4.020485 ACAACACCATGACCCTAGTAAGTC 60.020 45.833 0.00 0.00 0.00 3.01
292 293 3.908103 ACAACACCATGACCCTAGTAAGT 59.092 43.478 0.00 0.00 0.00 2.24
293 294 4.223032 AGACAACACCATGACCCTAGTAAG 59.777 45.833 0.00 0.00 0.00 2.34
294 295 4.164981 AGACAACACCATGACCCTAGTAA 58.835 43.478 0.00 0.00 0.00 2.24
295 296 3.786553 AGACAACACCATGACCCTAGTA 58.213 45.455 0.00 0.00 0.00 1.82
296 297 2.621070 AGACAACACCATGACCCTAGT 58.379 47.619 0.00 0.00 0.00 2.57
297 298 4.162320 ACATAGACAACACCATGACCCTAG 59.838 45.833 0.00 0.00 0.00 3.02
298 299 4.101114 ACATAGACAACACCATGACCCTA 58.899 43.478 0.00 0.00 0.00 3.53
299 300 2.912956 ACATAGACAACACCATGACCCT 59.087 45.455 0.00 0.00 0.00 4.34
300 301 3.350219 ACATAGACAACACCATGACCC 57.650 47.619 0.00 0.00 0.00 4.46
301 302 5.057149 GGATACATAGACAACACCATGACC 58.943 45.833 0.00 0.00 0.00 4.02
302 303 5.670485 TGGATACATAGACAACACCATGAC 58.330 41.667 0.00 0.00 46.17 3.06
303 304 5.948742 TGGATACATAGACAACACCATGA 57.051 39.130 0.00 0.00 46.17 3.07
319 320 6.480320 GGAAACTCAGATACATGTGTGGATAC 59.520 42.308 9.11 0.00 0.00 2.24
320 321 6.384015 AGGAAACTCAGATACATGTGTGGATA 59.616 38.462 9.11 0.00 32.90 2.59
321 322 5.190528 AGGAAACTCAGATACATGTGTGGAT 59.809 40.000 9.11 0.00 32.90 3.41
322 323 4.532126 AGGAAACTCAGATACATGTGTGGA 59.468 41.667 9.11 1.00 32.90 4.02
323 324 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
324 325 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
325 326 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
326 327 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
327 328 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
328 329 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
336 337 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
337 338 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
340 341 9.288576 CCATGCTAGAATTGTATTGATAGGAAA 57.711 33.333 0.00 0.00 0.00 3.13
341 342 8.659527 TCCATGCTAGAATTGTATTGATAGGAA 58.340 33.333 0.00 0.00 0.00 3.36
342 343 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
351 352 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
352 353 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
402 403 9.082313 CCTAGAGGCAATGATAAATTGGTTATT 57.918 33.333 0.00 0.00 32.26 1.40
403 404 7.671398 CCCTAGAGGCAATGATAAATTGGTTAT 59.329 37.037 0.00 0.00 34.97 1.89
404 405 7.004086 CCCTAGAGGCAATGATAAATTGGTTA 58.996 38.462 0.00 0.00 0.00 2.85
405 406 5.835280 CCCTAGAGGCAATGATAAATTGGTT 59.165 40.000 0.00 0.00 0.00 3.67
406 407 5.388654 CCCTAGAGGCAATGATAAATTGGT 58.611 41.667 0.00 0.00 0.00 3.67
407 408 5.972107 CCCTAGAGGCAATGATAAATTGG 57.028 43.478 0.00 0.00 0.00 3.16
421 422 4.080299 ACTGTTGGAAATAAGCCCTAGAGG 60.080 45.833 0.00 0.00 39.47 3.69
422 423 5.104259 ACTGTTGGAAATAAGCCCTAGAG 57.896 43.478 0.00 0.00 0.00 2.43
423 424 4.534500 TGACTGTTGGAAATAAGCCCTAGA 59.466 41.667 0.00 0.00 0.00 2.43
424 425 4.843728 TGACTGTTGGAAATAAGCCCTAG 58.156 43.478 0.00 0.00 0.00 3.02
425 426 4.919774 TGACTGTTGGAAATAAGCCCTA 57.080 40.909 0.00 0.00 0.00 3.53
426 427 3.806949 TGACTGTTGGAAATAAGCCCT 57.193 42.857 0.00 0.00 0.00 5.19
427 428 5.163550 GGTAATGACTGTTGGAAATAAGCCC 60.164 44.000 0.00 0.00 0.00 5.19
428 429 5.163550 GGGTAATGACTGTTGGAAATAAGCC 60.164 44.000 0.00 0.00 0.00 4.35
429 430 5.652452 AGGGTAATGACTGTTGGAAATAAGC 59.348 40.000 0.00 0.00 0.00 3.09
430 431 7.703058 AAGGGTAATGACTGTTGGAAATAAG 57.297 36.000 0.00 0.00 0.00 1.73
431 432 9.016438 GTTAAGGGTAATGACTGTTGGAAATAA 57.984 33.333 0.00 0.00 0.00 1.40
432 433 7.612633 GGTTAAGGGTAATGACTGTTGGAAATA 59.387 37.037 0.00 0.00 0.00 1.40
433 434 6.436218 GGTTAAGGGTAATGACTGTTGGAAAT 59.564 38.462 0.00 0.00 0.00 2.17
434 435 5.771165 GGTTAAGGGTAATGACTGTTGGAAA 59.229 40.000 0.00 0.00 0.00 3.13
435 436 5.318630 GGTTAAGGGTAATGACTGTTGGAA 58.681 41.667 0.00 0.00 0.00 3.53
436 437 4.563993 CGGTTAAGGGTAATGACTGTTGGA 60.564 45.833 0.00 0.00 0.00 3.53
437 438 3.687698 CGGTTAAGGGTAATGACTGTTGG 59.312 47.826 0.00 0.00 0.00 3.77
438 439 4.320870 ACGGTTAAGGGTAATGACTGTTG 58.679 43.478 0.00 0.00 0.00 3.33
439 440 4.628963 ACGGTTAAGGGTAATGACTGTT 57.371 40.909 0.00 0.00 0.00 3.16
440 441 5.727434 CTTACGGTTAAGGGTAATGACTGT 58.273 41.667 0.00 0.00 32.33 3.55
505 506 2.231964 CCAGTACGGCTACCTTGTTACA 59.768 50.000 0.00 0.00 0.00 2.41
741 742 0.243636 GACATGGGGACGCCAAAAAG 59.756 55.000 16.09 8.47 0.00 2.27
796 797 3.366374 GCGAGAAAAACTCCATCCCTTTG 60.366 47.826 0.00 0.00 42.18 2.77
862 863 5.735354 GCACGCTCTACCACTAAGCTAATAA 60.735 44.000 0.00 0.00 33.83 1.40
871 872 2.056223 GGGGCACGCTCTACCACTA 61.056 63.158 0.00 0.00 38.67 2.74
1005 1006 4.030913 TCCGATTCAAACAGGAGGAGTAT 58.969 43.478 0.00 0.00 0.00 2.12
1054 1055 0.618968 ATCGCCCCATCTATCCTCCC 60.619 60.000 0.00 0.00 0.00 4.30
1273 1280 5.102953 TGAAAGGGGTGATCTCATAGTTG 57.897 43.478 0.00 0.00 0.00 3.16
1279 1286 3.054139 CCAGAATGAAAGGGGTGATCTCA 60.054 47.826 0.00 0.00 39.69 3.27
1447 1454 6.490381 ACACTCTAAGATCCTTTTTCAAACCC 59.510 38.462 0.00 0.00 0.00 4.11
1638 1645 7.365117 GGGAGAGAATCAATAGACTCCTTTTCA 60.365 40.741 0.00 0.00 42.17 2.69
1681 1688 1.257936 CGTGAAGTAAATCATCGCCCG 59.742 52.381 0.00 0.00 0.00 6.13
1887 1895 5.068723 ACCGGTTCAGGTACAAGATACTATG 59.931 44.000 0.00 0.00 43.89 2.23
1957 1965 8.258007 TCTTTTTGTCTCAGTAGAGTCTTTCAA 58.742 33.333 0.00 0.00 42.66 2.69
2068 2076 0.568192 AGGGAAGCCTAGGATAGCCA 59.432 55.000 14.75 0.00 37.37 4.75
2073 2081 2.618794 CAGATGAGGGAAGCCTAGGAT 58.381 52.381 14.75 1.88 0.00 3.24
2259 2267 2.687566 GGTCCGTGACCCCTGGAT 60.688 66.667 10.92 0.00 46.19 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.