Multiple sequence alignment - TraesCS3A01G429700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G429700 chr3A 100.000 3368 0 0 1 3368 672552536 672549169 0.000000e+00 6220.0
1 TraesCS3A01G429700 chr3D 92.013 3368 133 55 70 3368 537147065 537143765 0.000000e+00 4604.0
2 TraesCS3A01G429700 chr3D 90.541 74 4 3 1 72 537147173 537147101 9.950000e-16 95.3
3 TraesCS3A01G429700 chr3B 89.298 3420 183 85 77 3368 710589151 710585787 0.000000e+00 4119.0
4 TraesCS3A01G429700 chr1B 84.317 644 56 17 2571 3201 542807353 542806742 3.740000e-164 588.0
5 TraesCS3A01G429700 chrUn 79.825 228 38 4 2610 2834 304218273 304218051 3.480000e-35 159.0
6 TraesCS3A01G429700 chrUn 79.825 228 38 4 2610 2834 356637040 356637262 3.480000e-35 159.0
7 TraesCS3A01G429700 chr4B 79.825 228 38 4 2610 2834 237846966 237846744 3.480000e-35 159.0
8 TraesCS3A01G429700 chr4B 79.825 228 38 4 2610 2834 237886931 237886709 3.480000e-35 159.0
9 TraesCS3A01G429700 chr2D 93.023 43 3 0 1511 1553 32143562 32143604 2.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G429700 chr3A 672549169 672552536 3367 True 6220.00 6220 100.000 1 3368 1 chr3A.!!$R1 3367
1 TraesCS3A01G429700 chr3D 537143765 537147173 3408 True 2349.65 4604 91.277 1 3368 2 chr3D.!!$R1 3367
2 TraesCS3A01G429700 chr3B 710585787 710589151 3364 True 4119.00 4119 89.298 77 3368 1 chr3B.!!$R1 3291
3 TraesCS3A01G429700 chr1B 542806742 542807353 611 True 588.00 588 84.317 2571 3201 1 chr1B.!!$R1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1090 0.033991 CTTCCGACAGGGGAGAGAGA 60.034 60.000 0.0 0.0 45.43 3.1 F
991 1095 0.106217 GACAGGGGAGAGAGAGGAGG 60.106 65.000 0.0 0.0 0.00 4.3 F
992 1096 1.457455 CAGGGGAGAGAGAGGAGGC 60.457 68.421 0.0 0.0 0.00 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2090 0.591659 CCTTGATCATGATGCTGCCG 59.408 55.000 14.30 0.0 0.00 5.69 R
2037 2183 1.276421 AGCGTCATGAACAAGCTAGGT 59.724 47.619 12.59 0.0 36.28 3.08 R
2764 2986 1.373497 GATGGCTGATACTCCCGCG 60.373 63.158 0.00 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.619698 TCCAACTTCTCTAGGAATAATCAGTCA 59.380 37.037 0.00 0.00 33.01 3.41
55 56 6.825721 AGGAATAATCAGTCAAAGCCACTAAG 59.174 38.462 0.00 0.00 0.00 2.18
57 58 7.121315 GGAATAATCAGTCAAAGCCACTAAGTT 59.879 37.037 0.00 0.00 0.00 2.66
58 59 5.948992 AATCAGTCAAAGCCACTAAGTTC 57.051 39.130 0.00 0.00 0.00 3.01
60 61 2.480419 CAGTCAAAGCCACTAAGTTCCG 59.520 50.000 0.00 0.00 0.00 4.30
64 65 2.165319 AAGCCACTAAGTTCCGACAC 57.835 50.000 0.00 0.00 0.00 3.67
108 148 4.222353 AGGCACTTGAGGCTCTCA 57.778 55.556 16.72 1.25 40.91 3.27
169 209 2.125512 ATCGCGTCAGGTTCTGCC 60.126 61.111 5.77 0.00 37.58 4.85
170 210 3.989698 ATCGCGTCAGGTTCTGCCG 62.990 63.158 5.77 0.00 43.70 5.69
210 250 5.057819 CAGATCAGATCAGACCAAATCAGG 58.942 45.833 13.14 0.00 0.00 3.86
216 256 3.140814 GACCAAATCAGGCGGGGC 61.141 66.667 0.00 0.00 0.00 5.80
525 592 3.325716 GGTGGGGAACTAGTAGTTGTTGA 59.674 47.826 20.21 0.00 38.80 3.18
531 598 6.338937 GGGAACTAGTAGTTGTTGATGTAGG 58.661 44.000 20.21 0.00 38.80 3.18
553 633 2.750237 GGGGATCGCACCGCTTTT 60.750 61.111 12.32 0.00 39.35 2.27
560 640 0.108804 TCGCACCGCTTTTCTAGGAG 60.109 55.000 0.00 0.00 0.00 3.69
662 742 3.397482 CGGGAGGAGATAGAAAAGCATG 58.603 50.000 0.00 0.00 0.00 4.06
696 776 2.740055 AGCTCGGCAGTTCGCAAG 60.740 61.111 0.00 0.00 45.17 4.01
719 801 2.919494 GCCCGTTTGAAGCCCACTG 61.919 63.158 0.00 0.00 0.00 3.66
737 819 2.180769 GGAATTTCGGCCCGTTGC 59.819 61.111 1.63 0.00 40.16 4.17
759 842 2.353803 CGTCCAGAGGAATTCCGTTTCT 60.354 50.000 18.82 13.28 42.08 2.52
883 966 4.136511 TCGCTCGCGCCACCATTA 62.137 61.111 0.00 0.00 39.59 1.90
977 1081 2.125350 GCAGAGGCTTCCGACAGG 60.125 66.667 0.00 0.00 36.96 4.00
984 1088 1.682684 GCTTCCGACAGGGGAGAGA 60.683 63.158 0.00 0.00 45.43 3.10
985 1089 1.671901 GCTTCCGACAGGGGAGAGAG 61.672 65.000 0.00 0.00 45.43 3.20
986 1090 0.033991 CTTCCGACAGGGGAGAGAGA 60.034 60.000 0.00 0.00 45.43 3.10
987 1091 0.033991 TTCCGACAGGGGAGAGAGAG 60.034 60.000 0.00 0.00 37.40 3.20
988 1092 1.454847 CCGACAGGGGAGAGAGAGG 60.455 68.421 0.00 0.00 0.00 3.69
991 1095 0.106217 GACAGGGGAGAGAGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
992 1096 1.457455 CAGGGGAGAGAGAGGAGGC 60.457 68.421 0.00 0.00 0.00 4.70
1629 1775 4.754667 CTGGCGCTGCAGAGCTCA 62.755 66.667 35.87 29.30 43.77 4.26
1753 1899 2.979676 CGGTGGTGCACATGCTGT 60.980 61.111 20.43 0.00 42.66 4.40
2020 2166 2.653742 CACTACAGGTGCGTGATCG 58.346 57.895 0.00 0.00 39.22 3.69
2038 2184 5.205988 GATCGCATCAGATCATCATCAAC 57.794 43.478 0.00 0.00 44.70 3.18
2039 2185 3.396560 TCGCATCAGATCATCATCAACC 58.603 45.455 0.00 0.00 0.00 3.77
2050 2196 5.164620 TCATCATCAACCTAGCTTGTTCA 57.835 39.130 0.00 0.00 0.00 3.18
2051 2197 5.748402 TCATCATCAACCTAGCTTGTTCAT 58.252 37.500 0.00 0.00 0.00 2.57
2057 2211 1.276421 ACCTAGCTTGTTCATGACGCT 59.724 47.619 0.00 4.09 34.88 5.07
2058 2212 1.662629 CCTAGCTTGTTCATGACGCTG 59.337 52.381 14.69 7.55 32.49 5.18
2390 2549 9.664332 CTGAAATTCTGAATCCTTCTTAGAGAA 57.336 33.333 13.21 0.00 32.50 2.87
2486 2690 3.118186 TCGGTGTTTTCTTCCTCTTCCAA 60.118 43.478 0.00 0.00 0.00 3.53
2499 2703 4.599241 TCCTCTTCCAATTTTCACTCTCCT 59.401 41.667 0.00 0.00 0.00 3.69
2507 2718 5.123027 CCAATTTTCACTCTCCTTAGTGCTC 59.877 44.000 0.00 0.00 45.34 4.26
2562 2775 1.448985 TTTGTCAGTTCGGCATAGCC 58.551 50.000 0.00 0.00 46.75 3.93
2628 2841 4.196626 TGTCAACGACCGGAATTTAGAT 57.803 40.909 9.46 0.00 0.00 1.98
2633 2846 5.069383 TCAACGACCGGAATTTAGATATGGA 59.931 40.000 9.46 0.00 0.00 3.41
2653 2866 2.743636 ACACAGTCTCCGTTATGTGG 57.256 50.000 8.81 0.00 45.71 4.17
2675 2888 4.082136 GGGATAATCTTAGAGGCTGTACGG 60.082 50.000 0.00 0.00 0.00 4.02
2743 2957 5.173312 CACACGCACTCTATTCTTAATACGG 59.827 44.000 0.00 0.00 0.00 4.02
2746 2968 4.611782 CGCACTCTATTCTTAATACGGACG 59.388 45.833 0.00 0.00 0.00 4.79
2764 2986 3.126343 GGACGGTGATGTAAATTCACACC 59.874 47.826 0.00 0.00 44.22 4.16
2804 3026 2.695666 GGCTGCAGAGTAGACAAGGATA 59.304 50.000 20.43 0.00 0.00 2.59
2805 3027 3.491792 GGCTGCAGAGTAGACAAGGATAC 60.492 52.174 20.43 0.00 0.00 2.24
2845 3067 8.997621 TGTAACTCTAAACCACAAGATATGAC 57.002 34.615 0.00 0.00 0.00 3.06
2860 3082 7.722728 ACAAGATATGACATTGTGAATAGGCAT 59.277 33.333 0.00 0.00 35.89 4.40
2921 3146 4.148128 CAGGTTATGAGCTGTCCAAGAT 57.852 45.455 8.45 0.00 44.41 2.40
2924 3149 3.370953 GGTTATGAGCTGTCCAAGATGGT 60.371 47.826 0.00 0.00 39.03 3.55
2937 3175 3.380004 CCAAGATGGTAATAAAGGCGCAA 59.620 43.478 10.83 0.00 31.35 4.85
2954 3192 3.081804 CGCAAATAAAAGACCCCAGACT 58.918 45.455 0.00 0.00 0.00 3.24
2962 3200 8.950007 AATAAAAGACCCCAGACTTATCAAAA 57.050 30.769 0.00 0.00 0.00 2.44
2972 3210 7.040409 CCCCAGACTTATCAAAATAGGCAATAC 60.040 40.741 0.00 0.00 0.00 1.89
2973 3211 7.307989 CCCAGACTTATCAAAATAGGCAATACG 60.308 40.741 0.00 0.00 0.00 3.06
2974 3212 7.226720 CCAGACTTATCAAAATAGGCAATACGT 59.773 37.037 0.00 0.00 0.00 3.57
2975 3213 9.256477 CAGACTTATCAAAATAGGCAATACGTA 57.744 33.333 0.00 0.00 0.00 3.57
2992 3230 9.239002 GCAATACGTATATAAGATAAGGAGCAG 57.761 37.037 8.83 0.00 0.00 4.24
3006 3244 3.087031 AGGAGCAGAACAACCATCAATG 58.913 45.455 0.00 0.00 0.00 2.82
3084 3323 8.260818 CCCACTCTATGAACTGAGAAGATTAAA 58.739 37.037 0.00 0.00 34.65 1.52
3131 3373 5.006746 CACTGCCTTTATGATAACGAGGTTC 59.993 44.000 5.17 0.00 0.00 3.62
3160 3403 3.493129 TCACGAAACTGGATTCAAAGTCG 59.507 43.478 0.00 0.00 0.00 4.18
3161 3404 2.223377 ACGAAACTGGATTCAAAGTCGC 59.777 45.455 0.00 0.00 0.00 5.19
3243 3487 5.291905 ACATGTTACTATACTTCCTGCCC 57.708 43.478 0.00 0.00 0.00 5.36
3266 3510 3.254166 AGCAACCAACTAAACAGCAGATG 59.746 43.478 0.00 0.00 0.00 2.90
3277 3521 5.437289 AAACAGCAGATGACGAAAATTGA 57.563 34.783 0.00 0.00 0.00 2.57
3291 3535 4.211164 CGAAAATTGAAACAAGGGGAAAGC 59.789 41.667 0.00 0.00 0.00 3.51
3344 3588 1.377202 CCAACCACCGACCATCCAG 60.377 63.158 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.380742 TGATTATTCCTAGAGAAGTTGGAACT 57.619 34.615 0.00 0.00 40.78 3.01
44 45 2.490991 GTGTCGGAACTTAGTGGCTTT 58.509 47.619 0.00 0.00 0.00 3.51
60 61 1.710339 GCGAGATTTGCTCCGTGTC 59.290 57.895 0.00 0.00 40.70 3.67
64 65 3.929948 GCCGCGAGATTTGCTCCG 61.930 66.667 8.23 0.00 40.70 4.63
68 69 2.320044 GTACGCCGCGAGATTTGC 59.680 61.111 21.79 0.00 0.00 3.68
108 148 2.270205 CAGATGCAGAACGGCCCT 59.730 61.111 0.00 0.00 0.00 5.19
117 157 2.172372 GGAGCTGTCGCAGATGCAG 61.172 63.158 10.61 0.00 38.09 4.41
169 209 1.187704 CTGATGTTTGTTTTGTGCGCG 59.812 47.619 0.00 0.00 0.00 6.86
170 210 2.458951 TCTGATGTTTGTTTTGTGCGC 58.541 42.857 0.00 0.00 0.00 6.09
171 211 4.289342 TGATCTGATGTTTGTTTTGTGCG 58.711 39.130 0.00 0.00 0.00 5.34
262 302 4.890306 GCCTCCCCCTCCTCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
525 592 1.158705 CGATCCCCTCCCCCTACAT 59.841 63.158 0.00 0.00 0.00 2.29
553 633 2.765807 GCCTGGCAGCCTCCTAGA 60.766 66.667 15.17 0.00 0.00 2.43
696 776 4.056125 GCTTCAAACGGGCCCAGC 62.056 66.667 24.92 18.52 0.00 4.85
719 801 2.882132 CAACGGGCCGAAATTCCC 59.118 61.111 35.78 0.00 39.17 3.97
737 819 0.249398 AACGGAATTCCTCTGGACGG 59.751 55.000 22.05 6.56 34.34 4.79
838 921 4.084888 GGTTTCGCGCCAGAACGG 62.085 66.667 0.00 0.00 38.11 4.44
839 922 2.494504 GAAGGTTTCGCGCCAGAACG 62.495 60.000 0.00 0.00 0.00 3.95
903 986 2.049063 AGTGACCTCGCGTTGCTC 60.049 61.111 5.77 0.00 0.00 4.26
977 1081 2.520741 CCGCCTCCTCTCTCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
1629 1775 0.320771 GCATGGTGAGGAACGTGTCT 60.321 55.000 0.00 0.00 0.00 3.41
1944 2090 0.591659 CCTTGATCATGATGCTGCCG 59.408 55.000 14.30 0.00 0.00 5.69
2016 2162 4.093115 GGTTGATGATGATCTGATGCGATC 59.907 45.833 0.00 0.00 40.13 3.69
2018 2164 3.070590 AGGTTGATGATGATCTGATGCGA 59.929 43.478 0.00 0.00 0.00 5.10
2019 2165 3.400255 AGGTTGATGATGATCTGATGCG 58.600 45.455 0.00 0.00 0.00 4.73
2020 2166 4.392445 GCTAGGTTGATGATGATCTGATGC 59.608 45.833 0.00 0.00 0.00 3.91
2021 2167 5.795972 AGCTAGGTTGATGATGATCTGATG 58.204 41.667 0.00 0.00 0.00 3.07
2022 2168 6.183361 ACAAGCTAGGTTGATGATGATCTGAT 60.183 38.462 34.80 10.15 0.00 2.90
2024 2170 5.366460 ACAAGCTAGGTTGATGATGATCTG 58.634 41.667 34.80 10.46 0.00 2.90
2025 2171 5.627182 ACAAGCTAGGTTGATGATGATCT 57.373 39.130 34.80 11.49 0.00 2.75
2026 2172 5.819379 TGAACAAGCTAGGTTGATGATGATC 59.181 40.000 34.80 20.66 0.00 2.92
2027 2173 5.748402 TGAACAAGCTAGGTTGATGATGAT 58.252 37.500 34.80 12.84 0.00 2.45
2030 2176 5.587844 GTCATGAACAAGCTAGGTTGATGAT 59.412 40.000 34.80 22.75 45.74 2.45
2031 2177 4.937620 GTCATGAACAAGCTAGGTTGATGA 59.062 41.667 34.80 28.30 43.37 2.92
2032 2178 4.201753 CGTCATGAACAAGCTAGGTTGATG 60.202 45.833 34.80 26.87 39.98 3.07
2033 2179 3.935203 CGTCATGAACAAGCTAGGTTGAT 59.065 43.478 34.80 26.11 0.00 2.57
2034 2180 3.325870 CGTCATGAACAAGCTAGGTTGA 58.674 45.455 34.80 17.45 0.00 3.18
2035 2181 2.159653 GCGTCATGAACAAGCTAGGTTG 60.160 50.000 28.51 28.51 0.00 3.77
2036 2182 2.076863 GCGTCATGAACAAGCTAGGTT 58.923 47.619 0.12 0.12 0.00 3.50
2037 2183 1.276421 AGCGTCATGAACAAGCTAGGT 59.724 47.619 12.59 0.00 36.28 3.08
2038 2184 1.662629 CAGCGTCATGAACAAGCTAGG 59.337 52.381 13.49 2.74 36.28 3.02
2039 2185 2.346847 GTCAGCGTCATGAACAAGCTAG 59.653 50.000 13.49 9.67 36.28 3.42
2063 2217 4.892379 CATGCATGCGTTCGCCGG 62.892 66.667 14.93 0.00 36.94 6.13
2128 2287 3.393970 CTGCTTCTCCCCCGAGCA 61.394 66.667 0.00 0.00 43.56 4.26
2390 2549 6.731292 AGGAAACAAACAGAAGGCTTAATT 57.269 33.333 0.00 0.00 0.00 1.40
2391 2550 6.071896 GCTAGGAAACAAACAGAAGGCTTAAT 60.072 38.462 0.00 0.00 0.00 1.40
2392 2551 5.240844 GCTAGGAAACAAACAGAAGGCTTAA 59.759 40.000 0.00 0.00 0.00 1.85
2393 2552 4.760204 GCTAGGAAACAAACAGAAGGCTTA 59.240 41.667 0.00 0.00 0.00 3.09
2499 2703 5.166398 GTTCTAGCTTTAACGGAGCACTAA 58.834 41.667 0.00 0.00 42.56 2.24
2507 2718 6.161381 TGAAACTAGGTTCTAGCTTTAACGG 58.839 40.000 20.88 0.00 0.00 4.44
2628 2841 4.464951 ACATAACGGAGACTGTGTTCCATA 59.535 41.667 8.23 2.48 32.87 2.74
2633 2846 2.289444 CCCACATAACGGAGACTGTGTT 60.289 50.000 0.00 0.00 37.81 3.32
2639 2852 5.470047 AGATTATCCCACATAACGGAGAC 57.530 43.478 0.00 0.00 0.00 3.36
2641 2854 7.228314 TCTAAGATTATCCCACATAACGGAG 57.772 40.000 0.00 0.00 0.00 4.63
2653 2866 4.765856 TCCGTACAGCCTCTAAGATTATCC 59.234 45.833 0.00 0.00 0.00 2.59
2715 2929 3.152261 AGAATAGAGTGCGTGTGTAGC 57.848 47.619 0.00 0.00 0.00 3.58
2743 2957 4.336532 GGTGTGAATTTACATCACCGTC 57.663 45.455 8.65 0.00 45.19 4.79
2746 2968 2.475519 CGCGGTGTGAATTTACATCACC 60.476 50.000 13.42 6.45 45.19 4.02
2764 2986 1.373497 GATGGCTGATACTCCCGCG 60.373 63.158 0.00 0.00 0.00 6.46
2804 3026 5.048846 AGTTACATTCCACAGACCTTTGT 57.951 39.130 0.00 0.00 0.00 2.83
2805 3027 5.308825 AGAGTTACATTCCACAGACCTTTG 58.691 41.667 0.00 0.00 0.00 2.77
2845 3067 6.889301 AGTATTGGATGCCTATTCACAATG 57.111 37.500 0.00 0.00 31.71 2.82
2860 3082 7.611467 AGAAATGTATGCTGTCAAAGTATTGGA 59.389 33.333 0.00 0.00 37.15 3.53
2914 3139 3.211045 GCGCCTTTATTACCATCTTGGA 58.789 45.455 0.00 0.00 40.96 3.53
2917 3142 5.852282 ATTTGCGCCTTTATTACCATCTT 57.148 34.783 4.18 0.00 0.00 2.40
2919 3144 7.918562 TCTTTTATTTGCGCCTTTATTACCATC 59.081 33.333 4.18 0.00 0.00 3.51
2921 3146 7.030768 GTCTTTTATTTGCGCCTTTATTACCA 58.969 34.615 4.18 0.00 0.00 3.25
2924 3149 6.406065 GGGGTCTTTTATTTGCGCCTTTATTA 60.406 38.462 4.18 0.00 0.00 0.98
2937 3175 8.950007 TTTTGATAAGTCTGGGGTCTTTTATT 57.050 30.769 0.00 0.00 0.00 1.40
2972 3210 9.130312 GTTGTTCTGCTCCTTATCTTATATACG 57.870 37.037 0.00 0.00 0.00 3.06
2973 3211 9.425577 GGTTGTTCTGCTCCTTATCTTATATAC 57.574 37.037 0.00 0.00 0.00 1.47
2974 3212 9.154632 TGGTTGTTCTGCTCCTTATCTTATATA 57.845 33.333 0.00 0.00 0.00 0.86
2975 3213 8.034313 TGGTTGTTCTGCTCCTTATCTTATAT 57.966 34.615 0.00 0.00 0.00 0.86
2980 3218 4.225942 TGATGGTTGTTCTGCTCCTTATCT 59.774 41.667 0.00 0.00 0.00 1.98
2992 3230 5.468592 TGTATTGCACATTGATGGTTGTTC 58.531 37.500 0.00 0.00 30.04 3.18
3084 3323 1.392589 CAGTTTCACTGTGCCCTGTT 58.607 50.000 2.12 0.00 41.19 3.16
3131 3373 6.000891 TGAATCCAGTTTCGTGAATTCTTG 57.999 37.500 7.05 0.00 0.00 3.02
3160 3403 7.955864 CGGATAACTAAAAAGACTACAACTTGC 59.044 37.037 0.00 0.00 0.00 4.01
3161 3404 9.199982 TCGGATAACTAAAAAGACTACAACTTG 57.800 33.333 0.00 0.00 0.00 3.16
3243 3487 2.618241 TCTGCTGTTTAGTTGGTTGCTG 59.382 45.455 0.00 0.00 0.00 4.41
3266 3510 4.577834 TCCCCTTGTTTCAATTTTCGTC 57.422 40.909 0.00 0.00 0.00 4.20
3277 3521 1.770294 TGTTCGCTTTCCCCTTGTTT 58.230 45.000 0.00 0.00 0.00 2.83
3291 3535 6.711579 ACAATTTATACAGCGGTTATGTTCG 58.288 36.000 0.00 0.00 32.02 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.