Multiple sequence alignment - TraesCS3A01G428600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G428600 chr3A 100.000 3032 0 0 1 3032 671758951 671761982 0.000000e+00 5600.0
1 TraesCS3A01G428600 chr3A 80.975 1067 156 23 1333 2376 693484398 693485440 0.000000e+00 802.0
2 TraesCS3A01G428600 chr3A 81.867 750 125 7 1633 2380 693558634 693557894 3.320000e-174 621.0
3 TraesCS3A01G428600 chr3A 87.725 334 33 6 1039 1371 693484068 693484394 1.710000e-102 383.0
4 TraesCS3A01G428600 chr3A 85.714 357 38 8 995 1351 693647025 693647368 6.180000e-97 364.0
5 TraesCS3A01G428600 chr3A 83.898 354 52 2 1012 1363 693566454 693566104 1.740000e-87 333.0
6 TraesCS3A01G428600 chr3A 91.892 111 9 0 2507 2617 671761567 671761457 4.050000e-34 156.0
7 TraesCS3A01G428600 chr3D 94.336 918 36 6 935 1840 536334898 536335811 0.000000e+00 1393.0
8 TraesCS3A01G428600 chr3D 78.078 1405 237 38 1012 2396 557921006 557922359 0.000000e+00 822.0
9 TraesCS3A01G428600 chr3D 81.800 1011 155 18 1385 2376 557721529 557722529 0.000000e+00 821.0
10 TraesCS3A01G428600 chr3D 78.656 1176 212 24 1224 2380 557764771 557763616 0.000000e+00 745.0
11 TraesCS3A01G428600 chr3D 82.042 813 116 19 1550 2358 557914783 557915569 0.000000e+00 665.0
12 TraesCS3A01G428600 chr3D 83.471 726 97 13 1635 2358 557879665 557880369 0.000000e+00 654.0
13 TraesCS3A01G428600 chr3D 88.060 335 32 6 1039 1372 557721141 557721468 1.020000e-104 390.0
14 TraesCS3A01G428600 chr3D 88.715 319 30 4 1030 1348 557794913 557795225 4.740000e-103 385.0
15 TraesCS3A01G428600 chr3D 86.313 358 35 9 995 1351 557914222 557914566 7.930000e-101 377.0
16 TraesCS3A01G428600 chr3D 89.593 221 20 2 1013 1233 557766071 557765854 8.280000e-71 278.0
17 TraesCS3A01G428600 chr3D 93.478 46 3 0 2409 2454 557922735 557922780 5.420000e-08 69.4
18 TraesCS3A01G428600 chr4B 94.556 900 49 0 3 902 394620375 394621274 0.000000e+00 1391.0
19 TraesCS3A01G428600 chr4B 85.998 907 111 6 1 895 615825479 615826381 0.000000e+00 957.0
20 TraesCS3A01G428600 chr4B 81.087 883 163 4 1 881 17486109 17486989 0.000000e+00 702.0
21 TraesCS3A01G428600 chr2B 94.163 908 51 2 3 909 29192427 29191521 0.000000e+00 1382.0
22 TraesCS3A01G428600 chr2B 91.454 901 76 1 1 901 137929021 137928122 0.000000e+00 1236.0
23 TraesCS3A01G428600 chr2B 82.609 92 11 5 2566 2654 712888664 712888575 3.240000e-10 76.8
24 TraesCS3A01G428600 chr3B 92.163 906 59 6 1498 2401 708797172 708798067 0.000000e+00 1269.0
25 TraesCS3A01G428600 chr3B 79.810 1367 203 51 1018 2358 740503031 740504350 0.000000e+00 928.0
26 TraesCS3A01G428600 chr3B 81.751 1085 164 19 1333 2396 740039947 740041018 0.000000e+00 876.0
27 TraesCS3A01G428600 chr3B 90.657 578 27 8 899 1470 708796621 708797177 0.000000e+00 743.0
28 TraesCS3A01G428600 chr3B 83.333 732 103 14 1629 2358 740101321 740102035 0.000000e+00 658.0
29 TraesCS3A01G428600 chr3B 89.681 407 25 6 920 1318 708514038 708513641 1.250000e-138 503.0
30 TraesCS3A01G428600 chr3B 87.675 357 37 4 995 1351 740514515 740514864 2.810000e-110 409.0
31 TraesCS3A01G428600 chr3B 87.395 357 33 7 996 1352 740051408 740051752 1.690000e-107 399.0
32 TraesCS3A01G428600 chr7B 91.556 900 75 1 1 900 680121339 680122237 0.000000e+00 1240.0
33 TraesCS3A01G428600 chr7B 93.418 395 26 0 3 397 730126269 730125875 1.210000e-163 586.0
34 TraesCS3A01G428600 chr7B 91.395 430 27 2 472 901 730125555 730125136 5.630000e-162 580.0
35 TraesCS3A01G428600 chr2A 89.480 903 89 6 1 901 762611834 762610936 0.000000e+00 1136.0
36 TraesCS3A01G428600 chr7A 88.778 900 99 2 1 900 204182196 204181299 0.000000e+00 1101.0
37 TraesCS3A01G428600 chr7A 89.630 135 5 7 2492 2620 118166937 118166806 2.420000e-36 163.0
38 TraesCS3A01G428600 chr7A 91.228 114 8 2 2506 2617 130361564 130361677 1.460000e-33 154.0
39 TraesCS3A01G428600 chr7A 90.598 117 6 4 2507 2618 118166809 118166925 1.880000e-32 150.0
40 TraesCS3A01G428600 chr4D 83.259 902 142 8 1 899 122701973 122701078 0.000000e+00 821.0
41 TraesCS3A01G428600 chr4D 80.731 903 164 9 1 900 446172797 446173692 0.000000e+00 695.0
42 TraesCS3A01G428600 chr6B 83.073 898 147 4 1 895 617164763 617165658 0.000000e+00 811.0
43 TraesCS3A01G428600 chr6B 82.870 864 142 4 1 864 457871723 457872580 0.000000e+00 771.0
44 TraesCS3A01G428600 chr6B 85.481 613 87 2 1 613 118977278 118977888 3.300000e-179 638.0
45 TraesCS3A01G428600 chr5D 82.086 815 128 7 83 895 535499704 535498906 0.000000e+00 680.0
46 TraesCS3A01G428600 chr5D 89.076 119 7 4 2506 2622 530638595 530638709 3.150000e-30 143.0
47 TraesCS3A01G428600 chr5B 81.499 827 146 7 75 899 459582634 459581813 0.000000e+00 673.0
48 TraesCS3A01G428600 chr5B 89.167 120 9 3 2500 2617 559193078 559193195 2.440000e-31 147.0
49 TraesCS3A01G428600 chr5A 91.304 115 5 3 2505 2617 387966876 387966765 5.240000e-33 152.0
50 TraesCS3A01G428600 chr7D 89.744 117 6 5 2507 2617 161484837 161484953 8.760000e-31 145.0
51 TraesCS3A01G428600 chr1D 89.655 116 9 3 2506 2619 475807372 475807258 8.760000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G428600 chr3A 671758951 671761982 3031 False 5600.0 5600 100.0000 1 3032 1 chr3A.!!$F1 3031
1 TraesCS3A01G428600 chr3A 693557894 693558634 740 True 621.0 621 81.8670 1633 2380 1 chr3A.!!$R2 747
2 TraesCS3A01G428600 chr3A 693484068 693485440 1372 False 592.5 802 84.3500 1039 2376 2 chr3A.!!$F3 1337
3 TraesCS3A01G428600 chr3D 536334898 536335811 913 False 1393.0 1393 94.3360 935 1840 1 chr3D.!!$F1 905
4 TraesCS3A01G428600 chr3D 557879665 557880369 704 False 654.0 654 83.4710 1635 2358 1 chr3D.!!$F3 723
5 TraesCS3A01G428600 chr3D 557721141 557722529 1388 False 605.5 821 84.9300 1039 2376 2 chr3D.!!$F4 1337
6 TraesCS3A01G428600 chr3D 557914222 557915569 1347 False 521.0 665 84.1775 995 2358 2 chr3D.!!$F5 1363
7 TraesCS3A01G428600 chr3D 557763616 557766071 2455 True 511.5 745 84.1245 1013 2380 2 chr3D.!!$R1 1367
8 TraesCS3A01G428600 chr3D 557921006 557922780 1774 False 445.7 822 85.7780 1012 2454 2 chr3D.!!$F6 1442
9 TraesCS3A01G428600 chr4B 394620375 394621274 899 False 1391.0 1391 94.5560 3 902 1 chr4B.!!$F2 899
10 TraesCS3A01G428600 chr4B 615825479 615826381 902 False 957.0 957 85.9980 1 895 1 chr4B.!!$F3 894
11 TraesCS3A01G428600 chr4B 17486109 17486989 880 False 702.0 702 81.0870 1 881 1 chr4B.!!$F1 880
12 TraesCS3A01G428600 chr2B 29191521 29192427 906 True 1382.0 1382 94.1630 3 909 1 chr2B.!!$R1 906
13 TraesCS3A01G428600 chr2B 137928122 137929021 899 True 1236.0 1236 91.4540 1 901 1 chr2B.!!$R2 900
14 TraesCS3A01G428600 chr3B 708796621 708798067 1446 False 1006.0 1269 91.4100 899 2401 2 chr3B.!!$F6 1502
15 TraesCS3A01G428600 chr3B 740503031 740504350 1319 False 928.0 928 79.8100 1018 2358 1 chr3B.!!$F4 1340
16 TraesCS3A01G428600 chr3B 740039947 740041018 1071 False 876.0 876 81.7510 1333 2396 1 chr3B.!!$F1 1063
17 TraesCS3A01G428600 chr3B 740101321 740102035 714 False 658.0 658 83.3330 1629 2358 1 chr3B.!!$F3 729
18 TraesCS3A01G428600 chr7B 680121339 680122237 898 False 1240.0 1240 91.5560 1 900 1 chr7B.!!$F1 899
19 TraesCS3A01G428600 chr7B 730125136 730126269 1133 True 583.0 586 92.4065 3 901 2 chr7B.!!$R1 898
20 TraesCS3A01G428600 chr2A 762610936 762611834 898 True 1136.0 1136 89.4800 1 901 1 chr2A.!!$R1 900
21 TraesCS3A01G428600 chr7A 204181299 204182196 897 True 1101.0 1101 88.7780 1 900 1 chr7A.!!$R2 899
22 TraesCS3A01G428600 chr4D 122701078 122701973 895 True 821.0 821 83.2590 1 899 1 chr4D.!!$R1 898
23 TraesCS3A01G428600 chr4D 446172797 446173692 895 False 695.0 695 80.7310 1 900 1 chr4D.!!$F1 899
24 TraesCS3A01G428600 chr6B 617164763 617165658 895 False 811.0 811 83.0730 1 895 1 chr6B.!!$F3 894
25 TraesCS3A01G428600 chr6B 457871723 457872580 857 False 771.0 771 82.8700 1 864 1 chr6B.!!$F2 863
26 TraesCS3A01G428600 chr6B 118977278 118977888 610 False 638.0 638 85.4810 1 613 1 chr6B.!!$F1 612
27 TraesCS3A01G428600 chr5D 535498906 535499704 798 True 680.0 680 82.0860 83 895 1 chr5D.!!$R1 812
28 TraesCS3A01G428600 chr5B 459581813 459582634 821 True 673.0 673 81.4990 75 899 1 chr5B.!!$R1 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 876 0.107703 GGATCTCACCATTGCCACGA 60.108 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2602 4438 0.099082 GCAAGTACTCTCTCCGTCCG 59.901 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.061812 AGACATATGGCAGAGTCCCCT 60.062 52.381 12.11 0.00 0.00 4.79
59 60 2.107204 GGAGCAATGGAGGATACATGGT 59.893 50.000 0.00 0.00 41.41 3.55
196 197 6.149973 TCTGGCTGTTTGAGAATACAAATCAG 59.850 38.462 1.36 1.36 40.91 2.90
309 311 7.519328 GCTTTCCACTATGTCTTTCGTAAACAA 60.519 37.037 0.00 0.00 0.00 2.83
326 328 2.962859 ACAAATTTTGGGAGGAGCTGT 58.037 42.857 13.42 0.00 34.12 4.40
568 818 3.069079 AGTCTTGAAGCTCATGCATGT 57.931 42.857 25.43 6.92 42.74 3.21
599 849 1.894282 GCTCTAGCCCGGGATTTGC 60.894 63.158 29.31 19.44 34.31 3.68
626 876 0.107703 GGATCTCACCATTGCCACGA 60.108 55.000 0.00 0.00 0.00 4.35
824 1086 0.613572 TCGTCATGTGTGGCTAGGGA 60.614 55.000 0.00 0.00 0.00 4.20
826 1088 1.807755 CGTCATGTGTGGCTAGGGATG 60.808 57.143 0.00 0.00 0.00 3.51
881 1143 9.581289 TTGTGAACTTTGAATAAAATCCCTAGA 57.419 29.630 0.00 0.00 0.00 2.43
932 1194 2.468831 GCATCGTCTCTTCACTCCATC 58.531 52.381 0.00 0.00 0.00 3.51
958 1220 1.071471 CTCGATCCCCAATTCCCCG 59.929 63.158 0.00 0.00 0.00 5.73
963 1225 0.258774 ATCCCCAATTCCCCGTTCTG 59.741 55.000 0.00 0.00 0.00 3.02
970 1232 0.898326 ATTCCCCGTTCTGCCCAAAC 60.898 55.000 0.00 0.00 0.00 2.93
982 1244 1.595093 GCCCAAACCCTGAATCCACG 61.595 60.000 0.00 0.00 0.00 4.94
994 1256 1.874872 GAATCCACGGGAAACAAACGA 59.125 47.619 0.00 0.00 34.34 3.85
1382 2792 2.190313 GGGCGCAGACATGATGGA 59.810 61.111 10.83 0.00 37.00 3.41
1458 2886 4.142902 CGCCGATCCGAAATTATATTTGCT 60.143 41.667 0.00 0.00 0.00 3.91
1536 2976 3.835395 ACAAATTCGGGGAAGGCAAATTA 59.165 39.130 0.00 0.00 0.00 1.40
1594 3040 4.613944 CGATGGCGTGTCCTACTTTTATA 58.386 43.478 0.00 0.00 35.26 0.98
1697 3143 1.133976 CCATCTTACCTTGGCCTCAGG 60.134 57.143 17.64 17.64 0.00 3.86
1734 3183 0.392998 CACGATCCAGTCCCAAAGGG 60.393 60.000 0.00 0.00 46.11 3.95
1910 3365 5.411831 TCTGGTGTATATCTCATCCATGC 57.588 43.478 0.00 0.00 0.00 4.06
1944 3399 4.148128 ACTTCACATATGGCTCCTCAAG 57.852 45.455 7.80 1.24 0.00 3.02
1947 3402 1.770658 CACATATGGCTCCTCAAGGGA 59.229 52.381 7.80 0.00 42.77 4.20
2094 3549 1.485124 TGGGTCGATGTGCACTCTAT 58.515 50.000 19.41 2.66 0.00 1.98
2196 3651 0.400381 TGATGAGCTGGCCTCCCATA 60.400 55.000 3.32 0.00 41.21 2.74
2228 3683 3.021695 TCGTGGATAGTCCTACAAGGTG 58.978 50.000 0.00 0.00 37.46 4.00
2258 3713 6.834168 TTTTCCCTTTTGGTGATCTGTATC 57.166 37.500 0.00 0.00 38.10 2.24
2260 3717 2.614057 CCCTTTTGGTGATCTGTATCGC 59.386 50.000 0.00 0.00 41.13 4.58
2266 3723 1.335142 GGTGATCTGTATCGCGTCCTC 60.335 57.143 5.77 0.00 42.50 3.71
2286 3744 3.650139 TCGTAGAGGTTGCAGAGTTTTC 58.350 45.455 0.00 0.00 0.00 2.29
2314 3772 2.475187 GCATCGTGCATCTCACTGTTTC 60.475 50.000 0.00 0.00 44.26 2.78
2368 3841 7.976175 GTGATTGATTCCTTAGGCCTTTTTAAG 59.024 37.037 12.58 8.52 0.00 1.85
2383 3856 9.447040 GGCCTTTTTAAGAATACTAATTAAGCG 57.553 33.333 0.00 0.00 0.00 4.68
2400 3873 7.740519 ATTAAGCGACATTAGTGAATTTTGC 57.259 32.000 0.00 0.00 33.81 3.68
2401 3874 5.376854 AAGCGACATTAGTGAATTTTGCT 57.623 34.783 0.00 0.00 42.06 3.91
2403 3876 4.455533 AGCGACATTAGTGAATTTTGCTCA 59.544 37.500 0.00 0.00 37.78 4.26
2404 3877 5.048782 AGCGACATTAGTGAATTTTGCTCAA 60.049 36.000 0.00 0.00 37.78 3.02
2405 3878 5.801947 GCGACATTAGTGAATTTTGCTCAAT 59.198 36.000 0.00 0.00 31.77 2.57
2407 3880 7.645340 GCGACATTAGTGAATTTTGCTCAATAT 59.355 33.333 0.00 0.00 31.77 1.28
2436 4272 5.920085 CAAAATTGCACATGATAGTGTCG 57.080 39.130 0.00 0.00 41.52 4.35
2442 4278 3.198068 GCACATGATAGTGTCGATGGTT 58.802 45.455 0.00 0.00 41.52 3.67
2448 4284 4.637276 TGATAGTGTCGATGGTTGTTGTT 58.363 39.130 0.00 0.00 0.00 2.83
2454 4290 3.191581 TGTCGATGGTTGTTGTTGTTTGT 59.808 39.130 0.00 0.00 0.00 2.83
2455 4291 4.395231 TGTCGATGGTTGTTGTTGTTTGTA 59.605 37.500 0.00 0.00 0.00 2.41
2456 4292 4.731480 GTCGATGGTTGTTGTTGTTTGTAC 59.269 41.667 0.00 0.00 0.00 2.90
2457 4293 4.395231 TCGATGGTTGTTGTTGTTTGTACA 59.605 37.500 0.00 0.00 0.00 2.90
2458 4294 5.066634 TCGATGGTTGTTGTTGTTTGTACAT 59.933 36.000 0.00 0.00 33.44 2.29
2459 4295 6.260271 TCGATGGTTGTTGTTGTTTGTACATA 59.740 34.615 0.00 0.00 33.44 2.29
2460 4296 7.041030 TCGATGGTTGTTGTTGTTTGTACATAT 60.041 33.333 0.00 0.00 33.44 1.78
2461 4297 8.231161 CGATGGTTGTTGTTGTTTGTACATATA 58.769 33.333 0.00 0.00 33.44 0.86
2464 4300 9.684448 TGGTTGTTGTTGTTTGTACATATATTG 57.316 29.630 0.00 0.00 33.44 1.90
2465 4301 9.900710 GGTTGTTGTTGTTTGTACATATATTGA 57.099 29.630 0.00 0.00 33.44 2.57
2484 4320 6.710597 ATTGAAGTATTAGACTGTAGCGGA 57.289 37.500 0.00 0.00 38.87 5.54
2485 4321 5.496133 TGAAGTATTAGACTGTAGCGGAC 57.504 43.478 0.00 0.00 38.87 4.79
2486 4322 4.337555 TGAAGTATTAGACTGTAGCGGACC 59.662 45.833 0.00 0.00 38.87 4.46
2487 4323 3.220940 AGTATTAGACTGTAGCGGACCC 58.779 50.000 0.00 0.00 36.87 4.46
2488 4324 1.411041 ATTAGACTGTAGCGGACCCC 58.589 55.000 0.00 0.00 0.00 4.95
2489 4325 0.333993 TTAGACTGTAGCGGACCCCT 59.666 55.000 0.00 0.00 0.00 4.79
2490 4326 0.106819 TAGACTGTAGCGGACCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
2491 4327 1.380112 GACTGTAGCGGACCCCTCT 60.380 63.158 0.00 0.00 0.00 3.69
2492 4328 1.668101 GACTGTAGCGGACCCCTCTG 61.668 65.000 0.00 0.00 0.00 3.35
2493 4329 1.682684 CTGTAGCGGACCCCTCTGT 60.683 63.158 0.00 0.00 0.00 3.41
2494 4330 1.949847 CTGTAGCGGACCCCTCTGTG 61.950 65.000 0.00 0.00 0.00 3.66
2495 4331 1.681327 GTAGCGGACCCCTCTGTGA 60.681 63.158 0.00 0.00 0.00 3.58
2496 4332 1.681327 TAGCGGACCCCTCTGTGAC 60.681 63.158 0.00 0.00 0.00 3.67
2497 4333 2.151307 TAGCGGACCCCTCTGTGACT 62.151 60.000 0.00 0.00 0.00 3.41
2498 4334 3.007973 GCGGACCCCTCTGTGACTC 62.008 68.421 0.00 0.00 0.00 3.36
2499 4335 1.304547 CGGACCCCTCTGTGACTCT 60.305 63.158 0.00 0.00 0.00 3.24
2500 4336 1.599606 CGGACCCCTCTGTGACTCTG 61.600 65.000 0.00 0.00 0.00 3.35
2501 4337 0.543174 GGACCCCTCTGTGACTCTGT 60.543 60.000 0.00 0.00 0.00 3.41
2502 4338 0.605589 GACCCCTCTGTGACTCTGTG 59.394 60.000 0.00 0.00 0.00 3.66
2503 4339 0.833834 ACCCCTCTGTGACTCTGTGG 60.834 60.000 0.00 0.00 0.00 4.17
2504 4340 0.542938 CCCCTCTGTGACTCTGTGGA 60.543 60.000 4.62 0.00 32.75 4.02
2505 4341 1.342074 CCCTCTGTGACTCTGTGGAA 58.658 55.000 4.62 0.00 32.75 3.53
2506 4342 1.905215 CCCTCTGTGACTCTGTGGAAT 59.095 52.381 4.62 0.00 32.75 3.01
2507 4343 3.099905 CCCTCTGTGACTCTGTGGAATA 58.900 50.000 4.62 0.00 32.75 1.75
2508 4344 3.118956 CCCTCTGTGACTCTGTGGAATAC 60.119 52.174 4.62 0.00 32.75 1.89
2509 4345 3.766591 CCTCTGTGACTCTGTGGAATACT 59.233 47.826 0.00 0.00 32.75 2.12
2510 4346 4.142271 CCTCTGTGACTCTGTGGAATACTC 60.142 50.000 0.00 0.00 32.75 2.59
2511 4347 3.764434 TCTGTGACTCTGTGGAATACTCC 59.236 47.826 0.00 0.00 42.81 3.85
2512 4348 2.832129 TGTGACTCTGTGGAATACTCCC 59.168 50.000 0.00 0.00 41.64 4.30
2513 4349 3.100671 GTGACTCTGTGGAATACTCCCT 58.899 50.000 0.00 0.00 41.64 4.20
2514 4350 3.131400 GTGACTCTGTGGAATACTCCCTC 59.869 52.174 0.00 0.00 41.64 4.30
2515 4351 2.696187 GACTCTGTGGAATACTCCCTCC 59.304 54.545 0.00 0.00 41.64 4.30
2516 4352 1.683917 CTCTGTGGAATACTCCCTCCG 59.316 57.143 0.00 0.00 41.64 4.63
2517 4353 1.006758 TCTGTGGAATACTCCCTCCGT 59.993 52.381 0.00 0.00 41.64 4.69
2518 4354 1.409427 CTGTGGAATACTCCCTCCGTC 59.591 57.143 0.00 0.00 41.64 4.79
2519 4355 0.751452 GTGGAATACTCCCTCCGTCC 59.249 60.000 0.00 0.00 41.64 4.79
2520 4356 0.337082 TGGAATACTCCCTCCGTCCA 59.663 55.000 0.00 0.00 41.64 4.02
2521 4357 1.041437 GGAATACTCCCTCCGTCCAG 58.959 60.000 0.00 0.00 35.42 3.86
2522 4358 1.411216 GGAATACTCCCTCCGTCCAGA 60.411 57.143 0.00 0.00 35.42 3.86
2523 4359 2.385803 GAATACTCCCTCCGTCCAGAA 58.614 52.381 0.00 0.00 0.00 3.02
2524 4360 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
2525 4361 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
2526 4362 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
2527 4363 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
2528 4364 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
2529 4365 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
2530 4366 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
2531 4367 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
2532 4368 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
2533 4369 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
2534 4370 4.383118 CCTCCGTCCAGAAATACTTGTCAT 60.383 45.833 0.00 0.00 0.00 3.06
2535 4371 4.755411 TCCGTCCAGAAATACTTGTCATC 58.245 43.478 0.00 0.00 0.00 2.92
2536 4372 4.221924 TCCGTCCAGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 0.00 3.07
2537 4373 4.935205 CCGTCCAGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
2538 4374 5.411361 CCGTCCAGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 32.87 2.69
2539 4375 6.072728 CCGTCCAGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 32.87 2.44
2540 4376 7.362056 CCGTCCAGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 32.87 1.82
2541 4377 7.482743 CGTCCAGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
2542 4378 8.514594 GTCCAGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
2543 4379 9.076781 TCCAGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
2544 4380 9.865321 CCAGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
2552 4388 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
2553 4389 9.880157 CTTGTCATCAAAATGAATAAAAGGGAT 57.120 29.630 0.00 0.00 43.42 3.85
2554 4390 9.656040 TTGTCATCAAAATGAATAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
2555 4391 8.814931 TGTCATCAAAATGAATAAAAGGGATGT 58.185 29.630 0.00 0.00 43.42 3.06
2593 4429 8.814931 ACATCCCTTTTATTCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
2594 4430 9.656040 CATCCCTTTTATTCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
2595 4431 9.880157 ATCCCTTTTATTCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
2596 4432 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
2603 4439 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2604 4440 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2605 4441 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2606 4442 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2607 4443 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2608 4444 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2609 4445 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2610 4446 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2611 4447 2.165030 GACAAGTATTTCCGGACGGAGA 59.835 50.000 13.64 10.06 46.06 3.71
2612 4448 2.165845 ACAAGTATTTCCGGACGGAGAG 59.834 50.000 13.64 0.20 46.06 3.20
2613 4449 2.426024 CAAGTATTTCCGGACGGAGAGA 59.574 50.000 13.64 3.93 46.06 3.10
2614 4450 2.299521 AGTATTTCCGGACGGAGAGAG 58.700 52.381 13.64 0.00 46.06 3.20
2615 4451 2.022934 GTATTTCCGGACGGAGAGAGT 58.977 52.381 13.64 0.00 46.06 3.24
2616 4452 2.431954 ATTTCCGGACGGAGAGAGTA 57.568 50.000 13.64 0.00 46.06 2.59
2617 4453 1.457346 TTTCCGGACGGAGAGAGTAC 58.543 55.000 13.64 0.00 46.06 2.73
2618 4454 0.617413 TTCCGGACGGAGAGAGTACT 59.383 55.000 13.64 0.00 46.06 2.73
2619 4455 0.617413 TCCGGACGGAGAGAGTACTT 59.383 55.000 9.76 0.00 39.76 2.24
2620 4456 0.733729 CCGGACGGAGAGAGTACTTG 59.266 60.000 4.40 0.00 37.50 3.16
2621 4457 0.099082 CGGACGGAGAGAGTACTTGC 59.901 60.000 0.00 0.00 0.00 4.01
2622 4458 1.465794 GGACGGAGAGAGTACTTGCT 58.534 55.000 0.00 0.00 0.00 3.91
2623 4459 1.819903 GGACGGAGAGAGTACTTGCTT 59.180 52.381 0.00 0.00 0.00 3.91
2624 4460 2.159352 GGACGGAGAGAGTACTTGCTTC 60.159 54.545 0.00 0.00 0.00 3.86
2625 4461 2.750712 GACGGAGAGAGTACTTGCTTCT 59.249 50.000 0.00 0.00 0.00 2.85
2626 4462 2.490115 ACGGAGAGAGTACTTGCTTCTG 59.510 50.000 0.00 1.22 0.00 3.02
2627 4463 2.490115 CGGAGAGAGTACTTGCTTCTGT 59.510 50.000 0.00 0.00 0.00 3.41
2628 4464 3.057174 CGGAGAGAGTACTTGCTTCTGTT 60.057 47.826 0.00 0.00 0.00 3.16
2629 4465 4.559704 CGGAGAGAGTACTTGCTTCTGTTT 60.560 45.833 0.00 0.00 0.00 2.83
2630 4466 4.688413 GGAGAGAGTACTTGCTTCTGTTTG 59.312 45.833 0.00 0.00 0.00 2.93
2631 4467 5.283457 AGAGAGTACTTGCTTCTGTTTGT 57.717 39.130 0.00 0.00 0.00 2.83
2632 4468 5.053145 AGAGAGTACTTGCTTCTGTTTGTG 58.947 41.667 0.00 0.00 0.00 3.33
2633 4469 3.561725 AGAGTACTTGCTTCTGTTTGTGC 59.438 43.478 0.00 0.00 0.00 4.57
2634 4470 3.545703 AGTACTTGCTTCTGTTTGTGCT 58.454 40.909 0.00 0.00 0.00 4.40
2635 4471 2.857592 ACTTGCTTCTGTTTGTGCTG 57.142 45.000 0.00 0.00 0.00 4.41
2636 4472 1.406539 ACTTGCTTCTGTTTGTGCTGG 59.593 47.619 0.00 0.00 0.00 4.85
2637 4473 0.102844 TTGCTTCTGTTTGTGCTGGC 59.897 50.000 0.00 0.00 0.00 4.85
2638 4474 1.036481 TGCTTCTGTTTGTGCTGGCA 61.036 50.000 0.00 0.00 0.00 4.92
2639 4475 0.318445 GCTTCTGTTTGTGCTGGCAG 60.318 55.000 10.94 10.94 0.00 4.85
2640 4476 0.318445 CTTCTGTTTGTGCTGGCAGC 60.318 55.000 31.91 31.91 42.82 5.25
2649 4485 4.315588 GCTGGCAGCAGAAGTCAT 57.684 55.556 33.33 0.00 41.89 3.06
2650 4486 1.801332 GCTGGCAGCAGAAGTCATG 59.199 57.895 33.33 0.00 41.89 3.07
2651 4487 1.801332 CTGGCAGCAGAAGTCATGC 59.199 57.895 0.00 0.00 44.18 4.06
2662 4498 3.064900 GAAGTCATGCTTCCTGAACCT 57.935 47.619 15.07 0.00 45.95 3.50
2663 4499 2.486472 AGTCATGCTTCCTGAACCTG 57.514 50.000 0.00 0.00 0.00 4.00
2664 4500 1.004044 AGTCATGCTTCCTGAACCTGG 59.996 52.381 0.00 0.00 0.00 4.45
2665 4501 1.067295 TCATGCTTCCTGAACCTGGT 58.933 50.000 0.00 0.00 0.00 4.00
2666 4502 1.003580 TCATGCTTCCTGAACCTGGTC 59.996 52.381 0.00 0.00 0.00 4.02
2667 4503 1.004044 CATGCTTCCTGAACCTGGTCT 59.996 52.381 0.00 0.00 0.00 3.85
2668 4504 1.140312 TGCTTCCTGAACCTGGTCTT 58.860 50.000 0.00 0.00 0.00 3.01
2669 4505 1.072331 TGCTTCCTGAACCTGGTCTTC 59.928 52.381 0.00 0.00 0.00 2.87
2670 4506 1.611936 GCTTCCTGAACCTGGTCTTCC 60.612 57.143 0.00 0.00 0.00 3.46
2671 4507 1.003696 CTTCCTGAACCTGGTCTTCCC 59.996 57.143 0.00 0.00 0.00 3.97
2672 4508 0.193574 TCCTGAACCTGGTCTTCCCT 59.806 55.000 0.00 0.00 0.00 4.20
2673 4509 1.068121 CCTGAACCTGGTCTTCCCTT 58.932 55.000 0.00 0.00 0.00 3.95
2674 4510 1.425448 CCTGAACCTGGTCTTCCCTTT 59.575 52.381 0.00 0.00 0.00 3.11
2675 4511 2.642807 CCTGAACCTGGTCTTCCCTTTA 59.357 50.000 0.00 0.00 0.00 1.85
2676 4512 3.267031 CCTGAACCTGGTCTTCCCTTTAT 59.733 47.826 0.00 0.00 0.00 1.40
2677 4513 4.473559 CCTGAACCTGGTCTTCCCTTTATA 59.526 45.833 0.00 0.00 0.00 0.98
2678 4514 5.396884 CCTGAACCTGGTCTTCCCTTTATAG 60.397 48.000 0.00 0.00 0.00 1.31
2679 4515 5.098663 TGAACCTGGTCTTCCCTTTATAGT 58.901 41.667 0.00 0.00 0.00 2.12
2680 4516 5.189145 TGAACCTGGTCTTCCCTTTATAGTC 59.811 44.000 0.00 0.00 0.00 2.59
2681 4517 4.961585 ACCTGGTCTTCCCTTTATAGTCT 58.038 43.478 0.00 0.00 0.00 3.24
2682 4518 4.963628 ACCTGGTCTTCCCTTTATAGTCTC 59.036 45.833 0.00 0.00 0.00 3.36
2683 4519 4.962995 CCTGGTCTTCCCTTTATAGTCTCA 59.037 45.833 0.00 0.00 0.00 3.27
2684 4520 5.604650 CCTGGTCTTCCCTTTATAGTCTCAT 59.395 44.000 0.00 0.00 0.00 2.90
2685 4521 6.782988 CCTGGTCTTCCCTTTATAGTCTCATA 59.217 42.308 0.00 0.00 0.00 2.15
2686 4522 7.290248 CCTGGTCTTCCCTTTATAGTCTCATAA 59.710 40.741 0.00 0.00 0.00 1.90
2687 4523 8.798975 TGGTCTTCCCTTTATAGTCTCATAAT 57.201 34.615 0.00 0.00 0.00 1.28
2688 4524 9.892444 TGGTCTTCCCTTTATAGTCTCATAATA 57.108 33.333 0.00 0.00 0.00 0.98
2703 4539 9.886132 AGTCTCATAATAAAAATTCGTAGTGGT 57.114 29.630 0.00 0.00 0.00 4.16
2704 4540 9.916397 GTCTCATAATAAAAATTCGTAGTGGTG 57.084 33.333 0.00 0.00 0.00 4.17
2705 4541 8.609176 TCTCATAATAAAAATTCGTAGTGGTGC 58.391 33.333 0.00 0.00 0.00 5.01
2706 4542 8.500753 TCATAATAAAAATTCGTAGTGGTGCT 57.499 30.769 0.00 0.00 0.00 4.40
2707 4543 8.394877 TCATAATAAAAATTCGTAGTGGTGCTG 58.605 33.333 0.00 0.00 0.00 4.41
2708 4544 6.811253 AATAAAAATTCGTAGTGGTGCTGA 57.189 33.333 0.00 0.00 0.00 4.26
2709 4545 6.811253 ATAAAAATTCGTAGTGGTGCTGAA 57.189 33.333 0.00 0.00 0.00 3.02
2710 4546 5.508200 AAAAATTCGTAGTGGTGCTGAAA 57.492 34.783 0.00 0.00 0.00 2.69
2711 4547 5.508200 AAAATTCGTAGTGGTGCTGAAAA 57.492 34.783 0.00 0.00 0.00 2.29
2712 4548 4.483476 AATTCGTAGTGGTGCTGAAAAC 57.517 40.909 0.00 0.00 0.00 2.43
2713 4549 2.902705 TCGTAGTGGTGCTGAAAACT 57.097 45.000 0.00 0.00 0.00 2.66
2714 4550 2.479837 TCGTAGTGGTGCTGAAAACTG 58.520 47.619 0.00 0.00 0.00 3.16
2715 4551 1.069906 CGTAGTGGTGCTGAAAACTGC 60.070 52.381 0.00 0.00 0.00 4.40
2716 4552 1.266989 GTAGTGGTGCTGAAAACTGCC 59.733 52.381 0.00 0.00 0.00 4.85
2717 4553 1.109323 AGTGGTGCTGAAAACTGCCC 61.109 55.000 0.00 0.00 0.00 5.36
2718 4554 1.109323 GTGGTGCTGAAAACTGCCCT 61.109 55.000 0.00 0.00 0.00 5.19
2719 4555 0.476338 TGGTGCTGAAAACTGCCCTA 59.524 50.000 0.00 0.00 0.00 3.53
2720 4556 1.075374 TGGTGCTGAAAACTGCCCTAT 59.925 47.619 0.00 0.00 0.00 2.57
2721 4557 2.171003 GGTGCTGAAAACTGCCCTATT 58.829 47.619 0.00 0.00 0.00 1.73
2722 4558 2.562738 GGTGCTGAAAACTGCCCTATTT 59.437 45.455 0.00 0.00 0.00 1.40
2723 4559 3.578688 GTGCTGAAAACTGCCCTATTTG 58.421 45.455 0.00 0.00 0.00 2.32
2724 4560 2.029110 TGCTGAAAACTGCCCTATTTGC 60.029 45.455 0.00 0.00 0.00 3.68
2725 4561 2.232208 GCTGAAAACTGCCCTATTTGCT 59.768 45.455 0.00 0.00 0.00 3.91
2726 4562 3.306294 GCTGAAAACTGCCCTATTTGCTT 60.306 43.478 0.00 0.00 0.00 3.91
2727 4563 4.488879 CTGAAAACTGCCCTATTTGCTTC 58.511 43.478 0.00 0.00 0.00 3.86
2728 4564 4.151883 TGAAAACTGCCCTATTTGCTTCT 58.848 39.130 0.00 0.00 0.00 2.85
2729 4565 4.588528 TGAAAACTGCCCTATTTGCTTCTT 59.411 37.500 0.00 0.00 0.00 2.52
2730 4566 5.070313 TGAAAACTGCCCTATTTGCTTCTTT 59.930 36.000 0.00 0.00 0.00 2.52
2731 4567 4.790765 AACTGCCCTATTTGCTTCTTTC 57.209 40.909 0.00 0.00 0.00 2.62
2732 4568 2.749621 ACTGCCCTATTTGCTTCTTTCG 59.250 45.455 0.00 0.00 0.00 3.46
2733 4569 1.472480 TGCCCTATTTGCTTCTTTCGC 59.528 47.619 0.00 0.00 0.00 4.70
2734 4570 1.472480 GCCCTATTTGCTTCTTTCGCA 59.528 47.619 0.00 0.00 35.22 5.10
2735 4571 2.099756 GCCCTATTTGCTTCTTTCGCAT 59.900 45.455 0.00 0.00 37.22 4.73
2736 4572 3.699067 CCCTATTTGCTTCTTTCGCATG 58.301 45.455 0.00 0.00 37.22 4.06
2737 4573 3.489738 CCCTATTTGCTTCTTTCGCATGG 60.490 47.826 0.00 0.00 37.22 3.66
2738 4574 3.378112 CCTATTTGCTTCTTTCGCATGGA 59.622 43.478 0.00 0.00 37.22 3.41
2739 4575 4.037208 CCTATTTGCTTCTTTCGCATGGAT 59.963 41.667 0.00 0.00 37.22 3.41
2740 4576 3.492421 TTTGCTTCTTTCGCATGGATC 57.508 42.857 0.00 0.00 37.22 3.36
2741 4577 2.408271 TGCTTCTTTCGCATGGATCT 57.592 45.000 0.00 0.00 31.40 2.75
2742 4578 2.283298 TGCTTCTTTCGCATGGATCTC 58.717 47.619 0.00 0.00 31.40 2.75
2743 4579 2.093288 TGCTTCTTTCGCATGGATCTCT 60.093 45.455 0.00 0.00 31.40 3.10
2744 4580 2.543430 GCTTCTTTCGCATGGATCTCTC 59.457 50.000 0.00 0.00 0.00 3.20
2745 4581 3.790091 CTTCTTTCGCATGGATCTCTCA 58.210 45.455 0.00 0.00 0.00 3.27
2746 4582 4.378774 CTTCTTTCGCATGGATCTCTCAT 58.621 43.478 0.00 0.00 0.00 2.90
2747 4583 4.412796 TCTTTCGCATGGATCTCTCATT 57.587 40.909 0.00 0.00 0.00 2.57
2748 4584 4.375272 TCTTTCGCATGGATCTCTCATTC 58.625 43.478 0.00 0.00 0.00 2.67
2749 4585 4.100653 TCTTTCGCATGGATCTCTCATTCT 59.899 41.667 0.00 0.00 0.00 2.40
2750 4586 3.382048 TCGCATGGATCTCTCATTCTG 57.618 47.619 0.00 0.00 0.00 3.02
2751 4587 2.697229 TCGCATGGATCTCTCATTCTGT 59.303 45.455 0.00 0.00 0.00 3.41
2752 4588 3.133542 TCGCATGGATCTCTCATTCTGTT 59.866 43.478 0.00 0.00 0.00 3.16
2753 4589 3.493877 CGCATGGATCTCTCATTCTGTTC 59.506 47.826 0.00 0.00 0.00 3.18
2754 4590 4.706035 GCATGGATCTCTCATTCTGTTCT 58.294 43.478 0.00 0.00 0.00 3.01
2755 4591 5.508657 CGCATGGATCTCTCATTCTGTTCTA 60.509 44.000 0.00 0.00 0.00 2.10
2756 4592 6.465948 GCATGGATCTCTCATTCTGTTCTAT 58.534 40.000 0.00 0.00 0.00 1.98
2757 4593 7.576477 CGCATGGATCTCTCATTCTGTTCTATA 60.576 40.741 0.00 0.00 0.00 1.31
2758 4594 7.545265 GCATGGATCTCTCATTCTGTTCTATAC 59.455 40.741 0.00 0.00 0.00 1.47
2759 4595 8.805175 CATGGATCTCTCATTCTGTTCTATACT 58.195 37.037 0.00 0.00 0.00 2.12
2760 4596 8.774546 TGGATCTCTCATTCTGTTCTATACTT 57.225 34.615 0.00 0.00 0.00 2.24
2761 4597 8.637099 TGGATCTCTCATTCTGTTCTATACTTG 58.363 37.037 0.00 0.00 0.00 3.16
2762 4598 8.637986 GGATCTCTCATTCTGTTCTATACTTGT 58.362 37.037 0.00 0.00 0.00 3.16
2770 4606 9.809096 CATTCTGTTCTATACTTGTATCACAGT 57.191 33.333 17.66 6.42 33.57 3.55
2783 4619 7.976734 ACTTGTATCACAGTTATCTGAACTAGC 59.023 37.037 7.81 0.00 43.76 3.42
2784 4620 7.404671 TGTATCACAGTTATCTGAACTAGCA 57.595 36.000 7.81 0.00 43.76 3.49
2785 4621 7.484140 TGTATCACAGTTATCTGAACTAGCAG 58.516 38.462 7.81 0.00 43.76 4.24
2786 4622 5.984695 TCACAGTTATCTGAACTAGCAGT 57.015 39.130 7.81 0.00 43.76 4.40
2787 4623 5.714047 TCACAGTTATCTGAACTAGCAGTG 58.286 41.667 7.81 0.00 43.76 3.66
2788 4624 4.328440 CACAGTTATCTGAACTAGCAGTGC 59.672 45.833 7.13 7.13 43.76 4.40
2789 4625 4.021104 ACAGTTATCTGAACTAGCAGTGCA 60.021 41.667 19.20 2.32 43.76 4.57
2790 4626 4.931601 CAGTTATCTGAACTAGCAGTGCAA 59.068 41.667 19.20 0.00 43.76 4.08
2791 4627 5.409520 CAGTTATCTGAACTAGCAGTGCAAA 59.590 40.000 19.20 3.75 43.76 3.68
2792 4628 5.997746 AGTTATCTGAACTAGCAGTGCAAAA 59.002 36.000 19.20 0.94 32.29 2.44
2793 4629 6.656693 AGTTATCTGAACTAGCAGTGCAAAAT 59.343 34.615 19.20 0.00 32.29 1.82
2794 4630 5.972107 ATCTGAACTAGCAGTGCAAAATT 57.028 34.783 19.20 5.75 32.29 1.82
2795 4631 5.112220 TCTGAACTAGCAGTGCAAAATTG 57.888 39.130 19.20 0.00 32.29 2.32
2796 4632 4.557296 TCTGAACTAGCAGTGCAAAATTGC 60.557 41.667 19.20 11.11 43.15 3.56
2810 4646 4.942852 CAAAATTGCAAACTGGACCTACA 58.057 39.130 1.71 0.00 0.00 2.74
2811 4647 5.355596 CAAAATTGCAAACTGGACCTACAA 58.644 37.500 1.71 0.00 0.00 2.41
2812 4648 5.606348 AAATTGCAAACTGGACCTACAAA 57.394 34.783 1.71 0.00 0.00 2.83
2813 4649 5.606348 AATTGCAAACTGGACCTACAAAA 57.394 34.783 1.71 0.00 0.00 2.44
2814 4650 5.606348 ATTGCAAACTGGACCTACAAAAA 57.394 34.783 1.71 0.00 0.00 1.94
2815 4651 4.379339 TGCAAACTGGACCTACAAAAAC 57.621 40.909 0.00 0.00 0.00 2.43
2816 4652 3.764434 TGCAAACTGGACCTACAAAAACA 59.236 39.130 0.00 0.00 0.00 2.83
2817 4653 4.404073 TGCAAACTGGACCTACAAAAACAT 59.596 37.500 0.00 0.00 0.00 2.71
2818 4654 4.744631 GCAAACTGGACCTACAAAAACATG 59.255 41.667 0.00 0.00 0.00 3.21
2819 4655 5.451242 GCAAACTGGACCTACAAAAACATGA 60.451 40.000 0.00 0.00 0.00 3.07
2820 4656 6.208644 CAAACTGGACCTACAAAAACATGAG 58.791 40.000 0.00 0.00 0.00 2.90
2821 4657 5.304686 ACTGGACCTACAAAAACATGAGA 57.695 39.130 0.00 0.00 0.00 3.27
2822 4658 5.063880 ACTGGACCTACAAAAACATGAGAC 58.936 41.667 0.00 0.00 0.00 3.36
2823 4659 5.042463 TGGACCTACAAAAACATGAGACA 57.958 39.130 0.00 0.00 0.00 3.41
2824 4660 5.063204 TGGACCTACAAAAACATGAGACAG 58.937 41.667 0.00 0.00 0.00 3.51
2825 4661 4.083271 GGACCTACAAAAACATGAGACAGC 60.083 45.833 0.00 0.00 0.00 4.40
2826 4662 4.460263 ACCTACAAAAACATGAGACAGCA 58.540 39.130 0.00 0.00 0.00 4.41
2827 4663 5.072741 ACCTACAAAAACATGAGACAGCAT 58.927 37.500 0.00 0.00 0.00 3.79
2846 4682 7.593875 CAGCATGTATAAGAGGATTAAGAGC 57.406 40.000 0.00 0.00 0.00 4.09
2847 4683 7.385267 CAGCATGTATAAGAGGATTAAGAGCT 58.615 38.462 0.00 0.00 0.00 4.09
2848 4684 7.331440 CAGCATGTATAAGAGGATTAAGAGCTG 59.669 40.741 0.00 0.00 36.67 4.24
2849 4685 7.234371 AGCATGTATAAGAGGATTAAGAGCTGA 59.766 37.037 0.00 0.00 0.00 4.26
2850 4686 7.875041 GCATGTATAAGAGGATTAAGAGCTGAA 59.125 37.037 0.00 0.00 0.00 3.02
2851 4687 9.421806 CATGTATAAGAGGATTAAGAGCTGAAG 57.578 37.037 0.00 0.00 0.00 3.02
2852 4688 8.540507 TGTATAAGAGGATTAAGAGCTGAAGT 57.459 34.615 0.00 0.00 0.00 3.01
2853 4689 9.642343 TGTATAAGAGGATTAAGAGCTGAAGTA 57.358 33.333 0.00 0.00 0.00 2.24
2856 4692 5.852827 AGAGGATTAAGAGCTGAAGTATGC 58.147 41.667 0.00 0.00 0.00 3.14
2857 4693 4.967036 AGGATTAAGAGCTGAAGTATGCC 58.033 43.478 0.00 0.00 0.00 4.40
2858 4694 4.657969 AGGATTAAGAGCTGAAGTATGCCT 59.342 41.667 0.00 0.00 0.00 4.75
2859 4695 5.841237 AGGATTAAGAGCTGAAGTATGCCTA 59.159 40.000 0.00 0.00 0.00 3.93
2860 4696 6.014669 AGGATTAAGAGCTGAAGTATGCCTAG 60.015 42.308 0.00 0.00 0.00 3.02
2861 4697 3.467374 AAGAGCTGAAGTATGCCTAGC 57.533 47.619 0.00 0.00 34.71 3.42
2862 4698 1.691434 AGAGCTGAAGTATGCCTAGCC 59.309 52.381 0.00 0.00 35.05 3.93
2863 4699 1.691434 GAGCTGAAGTATGCCTAGCCT 59.309 52.381 0.00 0.00 35.05 4.58
2864 4700 2.103941 GAGCTGAAGTATGCCTAGCCTT 59.896 50.000 0.00 0.00 35.05 4.35
2865 4701 2.158842 AGCTGAAGTATGCCTAGCCTTG 60.159 50.000 0.00 0.00 35.05 3.61
2866 4702 2.420687 GCTGAAGTATGCCTAGCCTTGT 60.421 50.000 0.00 0.00 0.00 3.16
2867 4703 3.462021 CTGAAGTATGCCTAGCCTTGTC 58.538 50.000 0.00 0.00 0.00 3.18
2868 4704 2.837591 TGAAGTATGCCTAGCCTTGTCA 59.162 45.455 0.00 0.00 0.00 3.58
2869 4705 3.263170 TGAAGTATGCCTAGCCTTGTCAA 59.737 43.478 0.00 0.00 0.00 3.18
2870 4706 4.080356 TGAAGTATGCCTAGCCTTGTCAAT 60.080 41.667 0.00 0.00 0.00 2.57
2871 4707 4.078639 AGTATGCCTAGCCTTGTCAATC 57.921 45.455 0.00 0.00 0.00 2.67
2872 4708 3.713764 AGTATGCCTAGCCTTGTCAATCT 59.286 43.478 0.00 0.00 0.00 2.40
2873 4709 2.408271 TGCCTAGCCTTGTCAATCTG 57.592 50.000 0.00 0.00 0.00 2.90
2874 4710 1.630369 TGCCTAGCCTTGTCAATCTGT 59.370 47.619 0.00 0.00 0.00 3.41
2875 4711 2.040278 TGCCTAGCCTTGTCAATCTGTT 59.960 45.455 0.00 0.00 0.00 3.16
2876 4712 3.263170 TGCCTAGCCTTGTCAATCTGTTA 59.737 43.478 0.00 0.00 0.00 2.41
2877 4713 4.080356 TGCCTAGCCTTGTCAATCTGTTAT 60.080 41.667 0.00 0.00 0.00 1.89
2878 4714 4.513318 GCCTAGCCTTGTCAATCTGTTATC 59.487 45.833 0.00 0.00 0.00 1.75
2879 4715 5.674525 CCTAGCCTTGTCAATCTGTTATCA 58.325 41.667 0.00 0.00 0.00 2.15
2880 4716 6.294473 CCTAGCCTTGTCAATCTGTTATCAT 58.706 40.000 0.00 0.00 0.00 2.45
2881 4717 6.204301 CCTAGCCTTGTCAATCTGTTATCATG 59.796 42.308 0.00 0.00 0.00 3.07
2882 4718 4.337555 AGCCTTGTCAATCTGTTATCATGC 59.662 41.667 0.00 0.00 0.00 4.06
2883 4719 4.337555 GCCTTGTCAATCTGTTATCATGCT 59.662 41.667 0.00 0.00 0.00 3.79
2884 4720 5.732528 GCCTTGTCAATCTGTTATCATGCTG 60.733 44.000 0.00 0.00 0.00 4.41
2885 4721 5.587443 CCTTGTCAATCTGTTATCATGCTGA 59.413 40.000 0.00 0.00 0.00 4.26
2886 4722 6.426980 TTGTCAATCTGTTATCATGCTGAC 57.573 37.500 0.00 0.00 34.03 3.51
2887 4723 4.877823 TGTCAATCTGTTATCATGCTGACC 59.122 41.667 0.00 0.00 32.77 4.02
2888 4724 4.877823 GTCAATCTGTTATCATGCTGACCA 59.122 41.667 0.00 0.00 0.00 4.02
2889 4725 4.877823 TCAATCTGTTATCATGCTGACCAC 59.122 41.667 0.00 0.00 0.00 4.16
2890 4726 4.767578 ATCTGTTATCATGCTGACCACT 57.232 40.909 0.00 0.00 0.00 4.00
2891 4727 5.876651 ATCTGTTATCATGCTGACCACTA 57.123 39.130 0.00 0.00 0.00 2.74
2892 4728 5.876651 TCTGTTATCATGCTGACCACTAT 57.123 39.130 0.00 0.00 0.00 2.12
2893 4729 5.604565 TCTGTTATCATGCTGACCACTATG 58.395 41.667 0.00 0.00 0.00 2.23
2894 4730 5.129320 TCTGTTATCATGCTGACCACTATGT 59.871 40.000 0.00 0.00 0.00 2.29
2895 4731 5.744171 TGTTATCATGCTGACCACTATGTT 58.256 37.500 0.00 0.00 0.00 2.71
2896 4732 6.179756 TGTTATCATGCTGACCACTATGTTT 58.820 36.000 0.00 0.00 0.00 2.83
2897 4733 6.658816 TGTTATCATGCTGACCACTATGTTTT 59.341 34.615 0.00 0.00 0.00 2.43
2898 4734 5.824904 ATCATGCTGACCACTATGTTTTC 57.175 39.130 0.00 0.00 0.00 2.29
2899 4735 4.910195 TCATGCTGACCACTATGTTTTCT 58.090 39.130 0.00 0.00 0.00 2.52
2900 4736 5.316167 TCATGCTGACCACTATGTTTTCTT 58.684 37.500 0.00 0.00 0.00 2.52
2901 4737 5.181811 TCATGCTGACCACTATGTTTTCTTG 59.818 40.000 0.00 0.00 0.00 3.02
2902 4738 3.253188 TGCTGACCACTATGTTTTCTTGC 59.747 43.478 0.00 0.00 0.00 4.01
2903 4739 3.253188 GCTGACCACTATGTTTTCTTGCA 59.747 43.478 0.00 0.00 0.00 4.08
2904 4740 4.787598 CTGACCACTATGTTTTCTTGCAC 58.212 43.478 0.00 0.00 0.00 4.57
2905 4741 4.203226 TGACCACTATGTTTTCTTGCACA 58.797 39.130 0.00 0.00 0.00 4.57
2906 4742 4.826733 TGACCACTATGTTTTCTTGCACAT 59.173 37.500 0.00 0.00 37.40 3.21
2907 4743 6.000840 TGACCACTATGTTTTCTTGCACATA 58.999 36.000 0.00 0.00 35.24 2.29
2908 4744 6.488344 TGACCACTATGTTTTCTTGCACATAA 59.512 34.615 0.00 0.00 35.84 1.90
2909 4745 7.013750 TGACCACTATGTTTTCTTGCACATAAA 59.986 33.333 0.00 0.00 35.84 1.40
2910 4746 7.895759 ACCACTATGTTTTCTTGCACATAAAT 58.104 30.769 0.00 0.00 35.84 1.40
2911 4747 9.019656 ACCACTATGTTTTCTTGCACATAAATA 57.980 29.630 0.00 0.00 35.84 1.40
2912 4748 9.507280 CCACTATGTTTTCTTGCACATAAATAG 57.493 33.333 0.00 0.00 35.84 1.73
2917 4753 8.389779 TGTTTTCTTGCACATAAATAGTCAGA 57.610 30.769 0.00 0.00 0.00 3.27
2918 4754 8.845227 TGTTTTCTTGCACATAAATAGTCAGAA 58.155 29.630 0.00 0.00 0.00 3.02
2919 4755 9.677567 GTTTTCTTGCACATAAATAGTCAGAAA 57.322 29.630 0.00 0.00 0.00 2.52
2920 4756 9.677567 TTTTCTTGCACATAAATAGTCAGAAAC 57.322 29.630 2.22 0.00 0.00 2.78
2921 4757 7.377766 TCTTGCACATAAATAGTCAGAAACC 57.622 36.000 0.00 0.00 0.00 3.27
2922 4758 6.374333 TCTTGCACATAAATAGTCAGAAACCC 59.626 38.462 0.00 0.00 0.00 4.11
2923 4759 5.565509 TGCACATAAATAGTCAGAAACCCA 58.434 37.500 0.00 0.00 0.00 4.51
2924 4760 6.186957 TGCACATAAATAGTCAGAAACCCAT 58.813 36.000 0.00 0.00 0.00 4.00
2925 4761 7.342581 TGCACATAAATAGTCAGAAACCCATA 58.657 34.615 0.00 0.00 0.00 2.74
2926 4762 7.831690 TGCACATAAATAGTCAGAAACCCATAA 59.168 33.333 0.00 0.00 0.00 1.90
2927 4763 8.682710 GCACATAAATAGTCAGAAACCCATAAA 58.317 33.333 0.00 0.00 0.00 1.40
2933 4769 8.525290 AATAGTCAGAAACCCATAAATTCTGG 57.475 34.615 13.08 0.91 46.32 3.86
2934 4770 6.139679 AGTCAGAAACCCATAAATTCTGGA 57.860 37.500 13.08 0.69 46.32 3.86
2935 4771 6.552008 AGTCAGAAACCCATAAATTCTGGAA 58.448 36.000 13.08 0.00 46.32 3.53
2936 4772 7.184862 AGTCAGAAACCCATAAATTCTGGAAT 58.815 34.615 13.08 0.00 46.32 3.01
2937 4773 7.675619 AGTCAGAAACCCATAAATTCTGGAATT 59.324 33.333 13.08 3.06 46.32 2.17
2939 4775 8.531146 TCAGAAACCCATAAATTCTGGAATTTC 58.469 33.333 20.16 17.81 44.98 2.17
2940 4776 7.765819 CAGAAACCCATAAATTCTGGAATTTCC 59.234 37.037 20.16 8.59 44.98 3.13
2941 4777 7.679881 AGAAACCCATAAATTCTGGAATTTCCT 59.320 33.333 20.16 9.92 44.98 3.36
2942 4778 8.909423 AAACCCATAAATTCTGGAATTTCCTA 57.091 30.769 20.16 7.95 44.98 2.94
2943 4779 9.506042 AAACCCATAAATTCTGGAATTTCCTAT 57.494 29.630 20.16 9.53 44.98 2.57
2944 4780 9.506042 AACCCATAAATTCTGGAATTTCCTATT 57.494 29.630 20.16 10.11 44.98 1.73
2945 4781 9.506042 ACCCATAAATTCTGGAATTTCCTATTT 57.494 29.630 20.16 17.80 44.98 1.40
2946 4782 9.987272 CCCATAAATTCTGGAATTTCCTATTTC 57.013 33.333 20.16 0.00 44.98 2.17
2955 4791 9.989296 TCTGGAATTTCCTATTTCTTAAATCCA 57.011 29.630 16.25 0.00 37.46 3.41
2988 4824 9.790389 AATTTTCTACATACTACTTCTCGACTG 57.210 33.333 0.00 0.00 0.00 3.51
2989 4825 7.918536 TTTCTACATACTACTTCTCGACTGT 57.081 36.000 0.00 0.00 0.00 3.55
2990 4826 6.905544 TCTACATACTACTTCTCGACTGTG 57.094 41.667 0.00 0.00 0.00 3.66
2991 4827 6.637657 TCTACATACTACTTCTCGACTGTGA 58.362 40.000 0.00 0.00 0.00 3.58
2992 4828 7.101700 TCTACATACTACTTCTCGACTGTGAA 58.898 38.462 0.00 0.00 0.00 3.18
2993 4829 5.940595 ACATACTACTTCTCGACTGTGAAC 58.059 41.667 0.00 0.00 0.00 3.18
2994 4830 3.919223 ACTACTTCTCGACTGTGAACC 57.081 47.619 0.00 0.00 0.00 3.62
2995 4831 3.488363 ACTACTTCTCGACTGTGAACCT 58.512 45.455 0.00 0.00 0.00 3.50
2996 4832 3.502979 ACTACTTCTCGACTGTGAACCTC 59.497 47.826 0.00 0.00 0.00 3.85
2997 4833 2.307768 ACTTCTCGACTGTGAACCTCA 58.692 47.619 0.00 0.00 0.00 3.86
2998 4834 2.693591 ACTTCTCGACTGTGAACCTCAA 59.306 45.455 0.00 0.00 0.00 3.02
2999 4835 3.243569 ACTTCTCGACTGTGAACCTCAAG 60.244 47.826 0.00 0.00 0.00 3.02
3000 4836 1.000163 TCTCGACTGTGAACCTCAAGC 60.000 52.381 0.00 0.00 0.00 4.01
3001 4837 1.000283 CTCGACTGTGAACCTCAAGCT 60.000 52.381 0.00 0.00 0.00 3.74
3002 4838 2.229062 CTCGACTGTGAACCTCAAGCTA 59.771 50.000 0.00 0.00 0.00 3.32
3003 4839 2.030185 TCGACTGTGAACCTCAAGCTAC 60.030 50.000 0.00 0.00 0.00 3.58
3004 4840 2.029828 CGACTGTGAACCTCAAGCTACT 60.030 50.000 0.00 0.00 0.00 2.57
3005 4841 3.553096 CGACTGTGAACCTCAAGCTACTT 60.553 47.826 0.00 0.00 0.00 2.24
3006 4842 4.321008 CGACTGTGAACCTCAAGCTACTTA 60.321 45.833 0.00 0.00 0.00 2.24
3007 4843 5.622460 CGACTGTGAACCTCAAGCTACTTAT 60.622 44.000 0.00 0.00 0.00 1.73
3008 4844 5.482908 ACTGTGAACCTCAAGCTACTTATG 58.517 41.667 0.00 0.00 0.00 1.90
3009 4845 5.246203 ACTGTGAACCTCAAGCTACTTATGA 59.754 40.000 0.00 0.00 0.00 2.15
3010 4846 5.724328 TGTGAACCTCAAGCTACTTATGAG 58.276 41.667 5.52 5.52 40.17 2.90
3016 4852 4.764172 CTCAAGCTACTTATGAGGTTGCT 58.236 43.478 9.18 0.00 46.91 3.91
3017 4853 5.907207 CTCAAGCTACTTATGAGGTTGCTA 58.093 41.667 9.18 0.00 46.91 3.49
3018 4854 6.294361 TCAAGCTACTTATGAGGTTGCTAA 57.706 37.500 9.18 0.00 46.91 3.09
3019 4855 6.889198 TCAAGCTACTTATGAGGTTGCTAAT 58.111 36.000 9.18 0.00 46.91 1.73
3020 4856 8.018537 TCAAGCTACTTATGAGGTTGCTAATA 57.981 34.615 9.18 0.00 46.91 0.98
3021 4857 7.926555 TCAAGCTACTTATGAGGTTGCTAATAC 59.073 37.037 9.18 0.00 46.91 1.89
3022 4858 7.604657 AGCTACTTATGAGGTTGCTAATACT 57.395 36.000 0.00 0.00 42.03 2.12
3023 4859 8.024145 AGCTACTTATGAGGTTGCTAATACTT 57.976 34.615 0.00 0.00 42.03 2.24
3024 4860 7.928706 AGCTACTTATGAGGTTGCTAATACTTG 59.071 37.037 0.00 0.00 42.03 3.16
3025 4861 7.711339 GCTACTTATGAGGTTGCTAATACTTGT 59.289 37.037 0.00 0.00 33.90 3.16
3026 4862 9.601217 CTACTTATGAGGTTGCTAATACTTGTT 57.399 33.333 0.00 0.00 0.00 2.83
3027 4863 8.863872 ACTTATGAGGTTGCTAATACTTGTTT 57.136 30.769 0.00 0.00 0.00 2.83
3028 4864 8.947115 ACTTATGAGGTTGCTAATACTTGTTTC 58.053 33.333 0.00 0.00 0.00 2.78
3029 4865 6.759497 ATGAGGTTGCTAATACTTGTTTCC 57.241 37.500 0.00 0.00 0.00 3.13
3030 4866 5.007682 TGAGGTTGCTAATACTTGTTTCCC 58.992 41.667 0.00 0.00 0.00 3.97
3031 4867 4.341487 AGGTTGCTAATACTTGTTTCCCC 58.659 43.478 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.605083 CTCCGCATATAGAGCAGGCA 59.395 55.000 0.00 0.00 0.00 4.75
59 60 0.038251 CAACTCAGTAGCGAGTGGCA 60.038 55.000 0.00 0.00 45.56 4.92
309 311 6.241645 GCTATATACAGCTCCTCCCAAAATT 58.758 40.000 0.00 0.00 38.57 1.82
491 738 1.410153 AGCACCAAGAAACTTGCCAAG 59.590 47.619 2.11 2.11 35.47 3.61
599 849 4.441079 GGCAATGGTGAGATCCTGAAAATG 60.441 45.833 0.00 0.00 0.00 2.32
626 876 6.339730 TGTTTGAAATCACTTCAGCACAATT 58.660 32.000 0.00 0.00 44.84 2.32
824 1086 3.641434 ACAAGCAATCTCTGGTAGCAT 57.359 42.857 0.00 0.00 33.58 3.79
826 1088 4.513318 GGAATACAAGCAATCTCTGGTAGC 59.487 45.833 0.00 0.00 33.58 3.58
909 1171 0.179097 GAGTGAAGAGACGATGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
910 1172 0.179097 GGAGTGAAGAGACGATGCCC 60.179 60.000 0.00 0.00 0.00 5.36
918 1180 2.010497 CGAGTCGATGGAGTGAAGAGA 58.990 52.381 6.73 0.00 0.00 3.10
932 1194 3.967335 GGGGATCGAGGCGAGTCG 61.967 72.222 8.54 8.54 39.91 4.18
958 1220 1.546029 GATTCAGGGTTTGGGCAGAAC 59.454 52.381 0.00 0.00 0.00 3.01
963 1225 1.595093 CGTGGATTCAGGGTTTGGGC 61.595 60.000 0.00 0.00 0.00 5.36
970 1232 0.037590 TGTTTCCCGTGGATTCAGGG 59.962 55.000 5.68 5.68 45.71 4.45
982 1244 3.316868 TCCATTCTGTTCGTTTGTTTCCC 59.683 43.478 0.00 0.00 0.00 3.97
994 1256 2.354203 GCGTCTCTCCTTCCATTCTGTT 60.354 50.000 0.00 0.00 0.00 3.16
1065 1327 4.980805 TTGGAGACACACGCCGCC 62.981 66.667 0.00 0.00 42.67 6.13
1066 1328 3.414700 CTTGGAGACACACGCCGC 61.415 66.667 0.00 0.00 42.67 6.53
1408 2818 1.864711 GAAGTTCTGTACGTGCAAGCA 59.135 47.619 7.96 0.00 0.00 3.91
1458 2886 2.436469 CATAGCGGGCTGTGCACA 60.436 61.111 20.37 20.37 33.85 4.57
1536 2976 6.015180 TGGAAAAGAGCTGAATAAAAGTGCAT 60.015 34.615 0.00 0.00 0.00 3.96
1594 3040 1.892819 CTGTCGCACTCCACCCTGAT 61.893 60.000 0.00 0.00 0.00 2.90
1697 3143 6.261381 GGATCGTGGATATAGTAGGATGTCTC 59.739 46.154 0.00 0.00 0.00 3.36
1707 3153 3.181422 TGGGACTGGATCGTGGATATAGT 60.181 47.826 0.00 0.00 0.00 2.12
1734 3183 2.553079 TTTTGTTGTGAACGAGCACC 57.447 45.000 9.27 0.00 37.99 5.01
1910 3365 7.086376 CCATATGTGAAGTTGAAACTCTTTGG 58.914 38.462 1.24 0.00 38.57 3.28
1944 3399 0.890996 CCAACAACCAGCTGTCTCCC 60.891 60.000 13.81 0.00 0.00 4.30
1947 3402 0.466189 CCACCAACAACCAGCTGTCT 60.466 55.000 13.81 0.00 0.00 3.41
2018 3473 7.879677 CCACATGGTTTATCTAGATATCAGCAA 59.120 37.037 20.15 8.41 0.00 3.91
2029 3484 3.743132 AGTCCCCCACATGGTTTATCTA 58.257 45.455 0.00 0.00 0.00 1.98
2094 3549 4.009675 GTGTCCTGCACTTGATATCCAAA 58.990 43.478 0.00 0.00 44.41 3.28
2196 3651 1.414181 CTATCCACGAGTGCAGGGAAT 59.586 52.381 0.00 0.00 32.25 3.01
2238 3693 3.681594 GCGATACAGATCACCAAAAGGGA 60.682 47.826 0.00 0.00 41.15 4.20
2241 3696 2.930040 ACGCGATACAGATCACCAAAAG 59.070 45.455 15.93 0.00 31.78 2.27
2245 3700 0.384309 GGACGCGATACAGATCACCA 59.616 55.000 15.93 0.00 31.78 4.17
2266 3723 2.737252 GGAAAACTCTGCAACCTCTACG 59.263 50.000 0.00 0.00 0.00 3.51
2276 3733 2.798976 TGCACATTGGAAAACTCTGC 57.201 45.000 0.00 0.00 0.00 4.26
2279 3736 3.236816 CACGATGCACATTGGAAAACTC 58.763 45.455 0.00 0.00 0.00 3.01
2314 3772 2.773993 AACCACCCCACAACTATACG 57.226 50.000 0.00 0.00 0.00 3.06
2380 3853 4.455533 TGAGCAAAATTCACTAATGTCGCT 59.544 37.500 0.00 0.00 0.00 4.93
2391 3864 9.486497 TTTGCAACTAATATTGAGCAAAATTCA 57.514 25.926 19.65 6.28 45.47 2.57
2458 4294 9.511272 TCCGCTACAGTCTAATACTTCAATATA 57.489 33.333 0.00 0.00 35.76 0.86
2459 4295 8.298140 GTCCGCTACAGTCTAATACTTCAATAT 58.702 37.037 0.00 0.00 35.76 1.28
2460 4296 7.255381 GGTCCGCTACAGTCTAATACTTCAATA 60.255 40.741 0.00 0.00 35.76 1.90
2461 4297 6.461231 GGTCCGCTACAGTCTAATACTTCAAT 60.461 42.308 0.00 0.00 35.76 2.57
2462 4298 5.163581 GGTCCGCTACAGTCTAATACTTCAA 60.164 44.000 0.00 0.00 35.76 2.69
2463 4299 4.337555 GGTCCGCTACAGTCTAATACTTCA 59.662 45.833 0.00 0.00 35.76 3.02
2464 4300 4.261530 GGGTCCGCTACAGTCTAATACTTC 60.262 50.000 0.00 0.00 35.76 3.01
2465 4301 3.635836 GGGTCCGCTACAGTCTAATACTT 59.364 47.826 0.00 0.00 35.76 2.24
2466 4302 3.220940 GGGTCCGCTACAGTCTAATACT 58.779 50.000 0.00 0.00 39.81 2.12
2467 4303 2.295629 GGGGTCCGCTACAGTCTAATAC 59.704 54.545 0.00 0.00 0.00 1.89
2468 4304 2.176364 AGGGGTCCGCTACAGTCTAATA 59.824 50.000 6.68 0.00 0.00 0.98
2469 4305 1.063114 AGGGGTCCGCTACAGTCTAAT 60.063 52.381 6.68 0.00 0.00 1.73
2470 4306 0.333993 AGGGGTCCGCTACAGTCTAA 59.666 55.000 6.68 0.00 0.00 2.10
2471 4307 0.106819 GAGGGGTCCGCTACAGTCTA 60.107 60.000 8.73 0.00 0.00 2.59
2472 4308 1.380112 GAGGGGTCCGCTACAGTCT 60.380 63.158 8.73 0.00 0.00 3.24
2473 4309 1.380112 AGAGGGGTCCGCTACAGTC 60.380 63.158 8.73 0.00 30.33 3.51
2474 4310 1.682684 CAGAGGGGTCCGCTACAGT 60.683 63.158 8.73 0.00 31.11 3.55
2475 4311 1.682684 ACAGAGGGGTCCGCTACAG 60.683 63.158 8.73 4.47 31.11 2.74
2476 4312 1.982395 CACAGAGGGGTCCGCTACA 60.982 63.158 8.73 0.00 31.11 2.74
2477 4313 1.681327 TCACAGAGGGGTCCGCTAC 60.681 63.158 8.73 3.08 31.11 3.58
2478 4314 1.681327 GTCACAGAGGGGTCCGCTA 60.681 63.158 8.73 0.00 31.11 4.26
2479 4315 2.997897 GTCACAGAGGGGTCCGCT 60.998 66.667 8.47 8.47 32.88 5.52
2480 4316 2.997897 AGTCACAGAGGGGTCCGC 60.998 66.667 0.00 0.00 0.00 5.54
2481 4317 1.304547 AGAGTCACAGAGGGGTCCG 60.305 63.158 0.00 0.00 0.00 4.79
2482 4318 0.543174 ACAGAGTCACAGAGGGGTCC 60.543 60.000 0.00 0.00 0.00 4.46
2483 4319 0.605589 CACAGAGTCACAGAGGGGTC 59.394 60.000 0.00 0.00 0.00 4.46
2484 4320 0.833834 CCACAGAGTCACAGAGGGGT 60.834 60.000 0.00 0.00 0.00 4.95
2485 4321 0.542938 TCCACAGAGTCACAGAGGGG 60.543 60.000 0.00 0.00 0.00 4.79
2486 4322 1.342074 TTCCACAGAGTCACAGAGGG 58.658 55.000 0.00 0.00 0.00 4.30
2487 4323 3.766591 AGTATTCCACAGAGTCACAGAGG 59.233 47.826 0.00 0.00 0.00 3.69
2488 4324 4.142271 GGAGTATTCCACAGAGTCACAGAG 60.142 50.000 0.00 0.00 43.45 3.35
2489 4325 3.764434 GGAGTATTCCACAGAGTCACAGA 59.236 47.826 0.00 0.00 43.45 3.41
2490 4326 3.118956 GGGAGTATTCCACAGAGTCACAG 60.119 52.174 6.61 0.00 45.98 3.66
2491 4327 2.832129 GGGAGTATTCCACAGAGTCACA 59.168 50.000 6.61 0.00 45.98 3.58
2492 4328 3.100671 AGGGAGTATTCCACAGAGTCAC 58.899 50.000 6.61 0.00 45.98 3.67
2493 4329 3.366396 GAGGGAGTATTCCACAGAGTCA 58.634 50.000 6.61 0.00 45.98 3.41
2494 4330 2.696187 GGAGGGAGTATTCCACAGAGTC 59.304 54.545 6.61 0.00 45.98 3.36
2495 4331 2.753247 GGAGGGAGTATTCCACAGAGT 58.247 52.381 6.61 0.00 45.98 3.24
2496 4332 1.683917 CGGAGGGAGTATTCCACAGAG 59.316 57.143 6.61 0.00 45.98 3.35
2497 4333 1.006758 ACGGAGGGAGTATTCCACAGA 59.993 52.381 6.61 0.00 45.98 3.41
2498 4334 1.409427 GACGGAGGGAGTATTCCACAG 59.591 57.143 6.61 3.43 45.98 3.66
2499 4335 1.481871 GACGGAGGGAGTATTCCACA 58.518 55.000 6.61 0.00 45.98 4.17
2500 4336 0.751452 GGACGGAGGGAGTATTCCAC 59.249 60.000 6.61 0.00 45.98 4.02
2501 4337 0.337082 TGGACGGAGGGAGTATTCCA 59.663 55.000 6.61 0.00 45.98 3.53
2502 4338 1.041437 CTGGACGGAGGGAGTATTCC 58.959 60.000 0.00 0.00 43.23 3.01
2503 4339 2.068834 TCTGGACGGAGGGAGTATTC 57.931 55.000 0.00 0.00 0.00 1.75
2504 4340 2.544844 TTCTGGACGGAGGGAGTATT 57.455 50.000 0.00 0.00 0.00 1.89
2505 4341 2.544844 TTTCTGGACGGAGGGAGTAT 57.455 50.000 0.00 0.00 0.00 2.12
2506 4342 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
2507 4343 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
2508 4344 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
2509 4345 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
2510 4346 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
2511 4347 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
2512 4348 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
2513 4349 4.221924 TGATGACAAGTATTTCTGGACGGA 59.778 41.667 0.00 0.00 0.00 4.69
2514 4350 4.503910 TGATGACAAGTATTTCTGGACGG 58.496 43.478 0.00 0.00 0.00 4.79
2515 4351 6.480524 TTTGATGACAAGTATTTCTGGACG 57.519 37.500 0.00 0.00 37.32 4.79
2516 4352 8.514594 TCATTTTGATGACAAGTATTTCTGGAC 58.485 33.333 0.00 0.00 37.32 4.02
2517 4353 8.634335 TCATTTTGATGACAAGTATTTCTGGA 57.366 30.769 0.00 0.00 37.32 3.86
2518 4354 9.865321 ATTCATTTTGATGACAAGTATTTCTGG 57.135 29.630 0.00 0.00 37.32 3.86
2526 4362 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
2527 4363 9.880157 ATCCCTTTTATTCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
2528 4364 9.656040 CATCCCTTTTATTCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
2529 4365 8.814931 ACATCCCTTTTATTCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
2567 4403 8.814931 TGTCATCAAAATGAATAAAAGGGATGT 58.185 29.630 0.00 0.00 43.42 3.06
2568 4404 9.656040 TTGTCATCAAAATGAATAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
2569 4405 9.880157 CTTGTCATCAAAATGAATAAAAGGGAT 57.120 29.630 0.00 0.00 43.42 3.85
2570 4406 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
2578 4414 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2579 4415 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2580 4416 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2581 4417 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2582 4418 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2583 4419 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2584 4420 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2585 4421 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2586 4422 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2587 4423 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2588 4424 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2589 4425 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2590 4426 2.165030 TCTCCGTCCGGAAATACTTGTC 59.835 50.000 5.23 0.00 44.66 3.18
2591 4427 2.165845 CTCTCCGTCCGGAAATACTTGT 59.834 50.000 5.23 0.00 44.66 3.16
2592 4428 2.426024 TCTCTCCGTCCGGAAATACTTG 59.574 50.000 5.23 0.00 44.66 3.16
2593 4429 2.688958 CTCTCTCCGTCCGGAAATACTT 59.311 50.000 5.23 0.00 44.66 2.24
2594 4430 2.299521 CTCTCTCCGTCCGGAAATACT 58.700 52.381 5.23 0.00 44.66 2.12
2595 4431 2.022934 ACTCTCTCCGTCCGGAAATAC 58.977 52.381 5.23 0.00 44.66 1.89
2596 4432 2.431954 ACTCTCTCCGTCCGGAAATA 57.568 50.000 5.23 0.00 44.66 1.40
2597 4433 2.022934 GTACTCTCTCCGTCCGGAAAT 58.977 52.381 5.23 0.00 44.66 2.17
2598 4434 1.004044 AGTACTCTCTCCGTCCGGAAA 59.996 52.381 5.23 0.00 44.66 3.13
2599 4435 0.617413 AGTACTCTCTCCGTCCGGAA 59.383 55.000 5.23 0.00 44.66 4.30
2600 4436 0.617413 AAGTACTCTCTCCGTCCGGA 59.383 55.000 0.00 0.00 42.90 5.14
2601 4437 0.733729 CAAGTACTCTCTCCGTCCGG 59.266 60.000 0.00 0.00 0.00 5.14
2602 4438 0.099082 GCAAGTACTCTCTCCGTCCG 59.901 60.000 0.00 0.00 0.00 4.79
2603 4439 1.465794 AGCAAGTACTCTCTCCGTCC 58.534 55.000 0.00 0.00 0.00 4.79
2604 4440 2.750712 AGAAGCAAGTACTCTCTCCGTC 59.249 50.000 0.00 0.00 0.00 4.79
2605 4441 2.490115 CAGAAGCAAGTACTCTCTCCGT 59.510 50.000 0.00 0.00 0.00 4.69
2606 4442 2.490115 ACAGAAGCAAGTACTCTCTCCG 59.510 50.000 0.00 0.00 0.00 4.63
2607 4443 4.529109 AACAGAAGCAAGTACTCTCTCC 57.471 45.455 0.00 0.00 0.00 3.71
2608 4444 5.176590 CACAAACAGAAGCAAGTACTCTCTC 59.823 44.000 0.00 0.00 0.00 3.20
2609 4445 5.053145 CACAAACAGAAGCAAGTACTCTCT 58.947 41.667 0.00 0.00 0.00 3.10
2610 4446 4.319118 GCACAAACAGAAGCAAGTACTCTC 60.319 45.833 0.00 0.00 0.00 3.20
2611 4447 3.561725 GCACAAACAGAAGCAAGTACTCT 59.438 43.478 0.00 0.00 0.00 3.24
2612 4448 3.561725 AGCACAAACAGAAGCAAGTACTC 59.438 43.478 0.00 0.00 0.00 2.59
2613 4449 3.313526 CAGCACAAACAGAAGCAAGTACT 59.686 43.478 0.00 0.00 0.00 2.73
2614 4450 3.548818 CCAGCACAAACAGAAGCAAGTAC 60.549 47.826 0.00 0.00 0.00 2.73
2615 4451 2.618241 CCAGCACAAACAGAAGCAAGTA 59.382 45.455 0.00 0.00 0.00 2.24
2616 4452 1.406539 CCAGCACAAACAGAAGCAAGT 59.593 47.619 0.00 0.00 0.00 3.16
2617 4453 1.866880 GCCAGCACAAACAGAAGCAAG 60.867 52.381 0.00 0.00 0.00 4.01
2618 4454 0.102844 GCCAGCACAAACAGAAGCAA 59.897 50.000 0.00 0.00 0.00 3.91
2619 4455 1.036481 TGCCAGCACAAACAGAAGCA 61.036 50.000 0.00 0.00 0.00 3.91
2620 4456 0.318445 CTGCCAGCACAAACAGAAGC 60.318 55.000 0.00 0.00 31.67 3.86
2621 4457 0.318445 GCTGCCAGCACAAACAGAAG 60.318 55.000 12.82 0.00 41.89 2.85
2622 4458 1.735360 GCTGCCAGCACAAACAGAA 59.265 52.632 12.82 0.00 41.89 3.02
2623 4459 3.435590 GCTGCCAGCACAAACAGA 58.564 55.556 12.82 0.00 41.89 3.41
2632 4468 1.801332 CATGACTTCTGCTGCCAGC 59.199 57.895 10.45 10.45 42.82 4.85
2633 4469 1.801332 GCATGACTTCTGCTGCCAG 59.199 57.895 0.00 0.00 40.54 4.85
2634 4470 3.991999 GCATGACTTCTGCTGCCA 58.008 55.556 0.00 0.00 36.68 4.92
2643 4479 2.553904 CCAGGTTCAGGAAGCATGACTT 60.554 50.000 13.07 0.00 42.98 3.01
2644 4480 1.004044 CCAGGTTCAGGAAGCATGACT 59.996 52.381 13.07 0.00 40.96 3.41
2645 4481 1.271597 ACCAGGTTCAGGAAGCATGAC 60.272 52.381 13.07 0.00 40.96 3.06
2646 4482 1.003580 GACCAGGTTCAGGAAGCATGA 59.996 52.381 13.07 0.00 40.96 3.07
2647 4483 1.004044 AGACCAGGTTCAGGAAGCATG 59.996 52.381 13.07 8.29 40.96 4.06
2648 4484 1.366319 AGACCAGGTTCAGGAAGCAT 58.634 50.000 13.07 0.00 40.96 3.79
2649 4485 1.072331 GAAGACCAGGTTCAGGAAGCA 59.928 52.381 13.07 0.00 40.96 3.91
2650 4486 1.611936 GGAAGACCAGGTTCAGGAAGC 60.612 57.143 0.00 3.12 38.96 3.86
2651 4487 1.003696 GGGAAGACCAGGTTCAGGAAG 59.996 57.143 0.00 0.00 39.85 3.46
2652 4488 1.064825 GGGAAGACCAGGTTCAGGAA 58.935 55.000 0.00 0.00 39.85 3.36
2653 4489 0.193574 AGGGAAGACCAGGTTCAGGA 59.806 55.000 0.00 0.00 43.89 3.86
2654 4490 1.068121 AAGGGAAGACCAGGTTCAGG 58.932 55.000 0.00 0.00 43.89 3.86
2655 4491 2.959465 AAAGGGAAGACCAGGTTCAG 57.041 50.000 0.00 0.00 43.89 3.02
2656 4492 5.098663 ACTATAAAGGGAAGACCAGGTTCA 58.901 41.667 0.00 0.00 43.89 3.18
2657 4493 5.425862 AGACTATAAAGGGAAGACCAGGTTC 59.574 44.000 0.00 0.00 43.89 3.62
2658 4494 5.351405 AGACTATAAAGGGAAGACCAGGTT 58.649 41.667 0.00 0.00 43.89 3.50
2659 4495 4.961585 AGACTATAAAGGGAAGACCAGGT 58.038 43.478 0.00 0.00 43.89 4.00
2660 4496 4.962995 TGAGACTATAAAGGGAAGACCAGG 59.037 45.833 0.00 0.00 43.89 4.45
2661 4497 6.739331 ATGAGACTATAAAGGGAAGACCAG 57.261 41.667 0.00 0.00 43.89 4.00
2662 4498 8.798975 ATTATGAGACTATAAAGGGAAGACCA 57.201 34.615 0.00 0.00 43.89 4.02
2677 4513 9.886132 ACCACTACGAATTTTTATTATGAGACT 57.114 29.630 0.00 0.00 0.00 3.24
2678 4514 9.916397 CACCACTACGAATTTTTATTATGAGAC 57.084 33.333 0.00 0.00 0.00 3.36
2679 4515 8.609176 GCACCACTACGAATTTTTATTATGAGA 58.391 33.333 0.00 0.00 0.00 3.27
2680 4516 8.612619 AGCACCACTACGAATTTTTATTATGAG 58.387 33.333 0.00 0.00 0.00 2.90
2681 4517 8.394877 CAGCACCACTACGAATTTTTATTATGA 58.605 33.333 0.00 0.00 0.00 2.15
2682 4518 8.394877 TCAGCACCACTACGAATTTTTATTATG 58.605 33.333 0.00 0.00 0.00 1.90
2683 4519 8.500753 TCAGCACCACTACGAATTTTTATTAT 57.499 30.769 0.00 0.00 0.00 1.28
2684 4520 7.908827 TCAGCACCACTACGAATTTTTATTA 57.091 32.000 0.00 0.00 0.00 0.98
2685 4521 6.811253 TCAGCACCACTACGAATTTTTATT 57.189 33.333 0.00 0.00 0.00 1.40
2686 4522 6.811253 TTCAGCACCACTACGAATTTTTAT 57.189 33.333 0.00 0.00 0.00 1.40
2687 4523 6.621316 TTTCAGCACCACTACGAATTTTTA 57.379 33.333 0.00 0.00 0.00 1.52
2688 4524 5.508200 TTTCAGCACCACTACGAATTTTT 57.492 34.783 0.00 0.00 0.00 1.94
2689 4525 5.067283 AGTTTTCAGCACCACTACGAATTTT 59.933 36.000 0.00 0.00 0.00 1.82
2690 4526 4.578928 AGTTTTCAGCACCACTACGAATTT 59.421 37.500 0.00 0.00 0.00 1.82
2691 4527 4.024048 CAGTTTTCAGCACCACTACGAATT 60.024 41.667 0.00 0.00 0.00 2.17
2692 4528 3.498397 CAGTTTTCAGCACCACTACGAAT 59.502 43.478 0.00 0.00 0.00 3.34
2693 4529 2.869801 CAGTTTTCAGCACCACTACGAA 59.130 45.455 0.00 0.00 0.00 3.85
2694 4530 2.479837 CAGTTTTCAGCACCACTACGA 58.520 47.619 0.00 0.00 0.00 3.43
2695 4531 1.069906 GCAGTTTTCAGCACCACTACG 60.070 52.381 0.00 0.00 32.46 3.51
2696 4532 1.266989 GGCAGTTTTCAGCACCACTAC 59.733 52.381 0.00 0.00 33.89 2.73
2697 4533 1.604604 GGCAGTTTTCAGCACCACTA 58.395 50.000 0.00 0.00 33.89 2.74
2698 4534 1.109323 GGGCAGTTTTCAGCACCACT 61.109 55.000 0.00 0.00 33.89 4.00
2699 4535 1.109323 AGGGCAGTTTTCAGCACCAC 61.109 55.000 0.00 0.00 36.34 4.16
2700 4536 0.476338 TAGGGCAGTTTTCAGCACCA 59.524 50.000 0.00 0.00 36.34 4.17
2701 4537 1.839424 ATAGGGCAGTTTTCAGCACC 58.161 50.000 0.00 0.00 36.34 5.01
2702 4538 3.578688 CAAATAGGGCAGTTTTCAGCAC 58.421 45.455 0.00 0.00 35.92 4.40
2703 4539 2.029110 GCAAATAGGGCAGTTTTCAGCA 60.029 45.455 0.00 0.00 33.89 4.41
2704 4540 2.232208 AGCAAATAGGGCAGTTTTCAGC 59.768 45.455 0.00 0.00 0.00 4.26
2705 4541 4.219288 AGAAGCAAATAGGGCAGTTTTCAG 59.781 41.667 0.00 0.00 0.00 3.02
2706 4542 4.151883 AGAAGCAAATAGGGCAGTTTTCA 58.848 39.130 0.00 0.00 0.00 2.69
2707 4543 4.790765 AGAAGCAAATAGGGCAGTTTTC 57.209 40.909 0.00 0.00 0.00 2.29
2708 4544 5.541845 GAAAGAAGCAAATAGGGCAGTTTT 58.458 37.500 0.00 0.00 0.00 2.43
2709 4545 4.321230 CGAAAGAAGCAAATAGGGCAGTTT 60.321 41.667 0.00 0.00 0.00 2.66
2710 4546 3.191371 CGAAAGAAGCAAATAGGGCAGTT 59.809 43.478 0.00 0.00 0.00 3.16
2711 4547 2.749621 CGAAAGAAGCAAATAGGGCAGT 59.250 45.455 0.00 0.00 0.00 4.40
2712 4548 2.478539 GCGAAAGAAGCAAATAGGGCAG 60.479 50.000 0.00 0.00 34.19 4.85
2713 4549 1.472480 GCGAAAGAAGCAAATAGGGCA 59.528 47.619 0.00 0.00 34.19 5.36
2714 4550 1.472480 TGCGAAAGAAGCAAATAGGGC 59.528 47.619 0.00 0.00 42.18 5.19
2723 4559 2.543430 GAGAGATCCATGCGAAAGAAGC 59.457 50.000 0.00 0.00 0.00 3.86
2724 4560 3.790091 TGAGAGATCCATGCGAAAGAAG 58.210 45.455 0.00 0.00 0.00 2.85
2725 4561 3.893326 TGAGAGATCCATGCGAAAGAA 57.107 42.857 0.00 0.00 0.00 2.52
2726 4562 4.100653 AGAATGAGAGATCCATGCGAAAGA 59.899 41.667 0.00 0.00 0.00 2.52
2727 4563 4.211584 CAGAATGAGAGATCCATGCGAAAG 59.788 45.833 0.00 0.00 39.69 2.62
2728 4564 4.124970 CAGAATGAGAGATCCATGCGAAA 58.875 43.478 0.00 0.00 39.69 3.46
2729 4565 3.133542 ACAGAATGAGAGATCCATGCGAA 59.866 43.478 0.00 0.00 39.69 4.70
2730 4566 2.697229 ACAGAATGAGAGATCCATGCGA 59.303 45.455 0.00 0.00 39.69 5.10
2731 4567 3.109044 ACAGAATGAGAGATCCATGCG 57.891 47.619 0.00 0.00 39.69 4.73
2732 4568 4.706035 AGAACAGAATGAGAGATCCATGC 58.294 43.478 0.00 0.00 39.69 4.06
2733 4569 8.805175 AGTATAGAACAGAATGAGAGATCCATG 58.195 37.037 0.00 0.00 39.69 3.66
2734 4570 8.954834 AGTATAGAACAGAATGAGAGATCCAT 57.045 34.615 0.00 0.00 39.69 3.41
2735 4571 8.637099 CAAGTATAGAACAGAATGAGAGATCCA 58.363 37.037 0.00 0.00 39.69 3.41
2736 4572 8.637986 ACAAGTATAGAACAGAATGAGAGATCC 58.362 37.037 0.00 0.00 39.69 3.36
2744 4580 9.809096 ACTGTGATACAAGTATAGAACAGAATG 57.191 33.333 23.19 9.34 46.00 2.67
2757 4593 7.976734 GCTAGTTCAGATAACTGTGATACAAGT 59.023 37.037 0.00 0.00 43.81 3.16
2758 4594 7.976175 TGCTAGTTCAGATAACTGTGATACAAG 59.024 37.037 0.00 0.00 43.81 3.16
2759 4595 7.836842 TGCTAGTTCAGATAACTGTGATACAA 58.163 34.615 0.00 0.00 43.81 2.41
2760 4596 7.122799 ACTGCTAGTTCAGATAACTGTGATACA 59.877 37.037 4.57 0.00 43.81 2.29
2761 4597 7.433719 CACTGCTAGTTCAGATAACTGTGATAC 59.566 40.741 4.57 0.00 43.81 2.24
2762 4598 7.484140 CACTGCTAGTTCAGATAACTGTGATA 58.516 38.462 4.57 0.00 43.81 2.15
2763 4599 6.336566 CACTGCTAGTTCAGATAACTGTGAT 58.663 40.000 4.57 0.00 43.81 3.06
2764 4600 5.714047 CACTGCTAGTTCAGATAACTGTGA 58.286 41.667 4.57 0.00 43.81 3.58
2765 4601 4.328440 GCACTGCTAGTTCAGATAACTGTG 59.672 45.833 4.57 2.15 43.81 3.66
2766 4602 4.021104 TGCACTGCTAGTTCAGATAACTGT 60.021 41.667 1.98 0.00 43.81 3.55
2767 4603 4.498241 TGCACTGCTAGTTCAGATAACTG 58.502 43.478 1.98 0.00 44.66 3.16
2768 4604 4.808414 TGCACTGCTAGTTCAGATAACT 57.192 40.909 1.98 0.00 37.51 2.24
2769 4605 5.862924 TTTGCACTGCTAGTTCAGATAAC 57.137 39.130 1.98 0.00 37.51 1.89
2770 4606 7.307694 CAATTTTGCACTGCTAGTTCAGATAA 58.692 34.615 1.98 0.00 37.51 1.75
2771 4607 6.845302 CAATTTTGCACTGCTAGTTCAGATA 58.155 36.000 1.98 0.00 37.51 1.98
2772 4608 5.706916 CAATTTTGCACTGCTAGTTCAGAT 58.293 37.500 1.98 0.00 37.51 2.90
2773 4609 5.112220 CAATTTTGCACTGCTAGTTCAGA 57.888 39.130 1.98 0.00 37.51 3.27
2788 4624 4.942852 TGTAGGTCCAGTTTGCAATTTTG 58.057 39.130 0.00 0.00 0.00 2.44
2789 4625 5.606348 TTGTAGGTCCAGTTTGCAATTTT 57.394 34.783 0.00 0.00 0.00 1.82
2790 4626 5.606348 TTTGTAGGTCCAGTTTGCAATTT 57.394 34.783 0.00 0.00 0.00 1.82
2791 4627 5.606348 TTTTGTAGGTCCAGTTTGCAATT 57.394 34.783 0.00 0.00 0.00 2.32
2792 4628 5.105146 TGTTTTTGTAGGTCCAGTTTGCAAT 60.105 36.000 0.00 0.00 0.00 3.56
2793 4629 4.220821 TGTTTTTGTAGGTCCAGTTTGCAA 59.779 37.500 0.00 0.00 0.00 4.08
2794 4630 3.764434 TGTTTTTGTAGGTCCAGTTTGCA 59.236 39.130 0.00 0.00 0.00 4.08
2795 4631 4.379339 TGTTTTTGTAGGTCCAGTTTGC 57.621 40.909 0.00 0.00 0.00 3.68
2796 4632 6.039270 TCTCATGTTTTTGTAGGTCCAGTTTG 59.961 38.462 0.00 0.00 0.00 2.93
2797 4633 6.039382 GTCTCATGTTTTTGTAGGTCCAGTTT 59.961 38.462 0.00 0.00 0.00 2.66
2798 4634 5.531287 GTCTCATGTTTTTGTAGGTCCAGTT 59.469 40.000 0.00 0.00 0.00 3.16
2799 4635 5.063880 GTCTCATGTTTTTGTAGGTCCAGT 58.936 41.667 0.00 0.00 0.00 4.00
2800 4636 5.063204 TGTCTCATGTTTTTGTAGGTCCAG 58.937 41.667 0.00 0.00 0.00 3.86
2801 4637 5.042463 TGTCTCATGTTTTTGTAGGTCCA 57.958 39.130 0.00 0.00 0.00 4.02
2802 4638 4.083271 GCTGTCTCATGTTTTTGTAGGTCC 60.083 45.833 0.00 0.00 0.00 4.46
2803 4639 4.515191 TGCTGTCTCATGTTTTTGTAGGTC 59.485 41.667 0.00 0.00 0.00 3.85
2804 4640 4.460263 TGCTGTCTCATGTTTTTGTAGGT 58.540 39.130 0.00 0.00 0.00 3.08
2805 4641 5.396484 CATGCTGTCTCATGTTTTTGTAGG 58.604 41.667 0.00 0.00 39.10 3.18
2815 4651 6.094193 TCCTCTTATACATGCTGTCTCATG 57.906 41.667 0.00 2.54 46.86 3.07
2816 4652 6.931790 ATCCTCTTATACATGCTGTCTCAT 57.068 37.500 0.00 0.00 0.00 2.90
2817 4653 6.737720 AATCCTCTTATACATGCTGTCTCA 57.262 37.500 0.00 0.00 0.00 3.27
2818 4654 8.580720 TCTTAATCCTCTTATACATGCTGTCTC 58.419 37.037 0.00 0.00 0.00 3.36
2819 4655 8.484214 TCTTAATCCTCTTATACATGCTGTCT 57.516 34.615 0.00 0.00 0.00 3.41
2820 4656 7.330700 GCTCTTAATCCTCTTATACATGCTGTC 59.669 40.741 0.00 0.00 0.00 3.51
2821 4657 7.016072 AGCTCTTAATCCTCTTATACATGCTGT 59.984 37.037 0.00 0.00 0.00 4.40
2822 4658 7.331440 CAGCTCTTAATCCTCTTATACATGCTG 59.669 40.741 0.00 0.00 35.51 4.41
2823 4659 7.234371 TCAGCTCTTAATCCTCTTATACATGCT 59.766 37.037 0.00 0.00 0.00 3.79
2824 4660 7.382110 TCAGCTCTTAATCCTCTTATACATGC 58.618 38.462 0.00 0.00 0.00 4.06
2825 4661 9.421806 CTTCAGCTCTTAATCCTCTTATACATG 57.578 37.037 0.00 0.00 0.00 3.21
2826 4662 9.153479 ACTTCAGCTCTTAATCCTCTTATACAT 57.847 33.333 0.00 0.00 0.00 2.29
2827 4663 8.540507 ACTTCAGCTCTTAATCCTCTTATACA 57.459 34.615 0.00 0.00 0.00 2.29
2830 4666 8.093927 GCATACTTCAGCTCTTAATCCTCTTAT 58.906 37.037 0.00 0.00 0.00 1.73
2831 4667 7.437748 GCATACTTCAGCTCTTAATCCTCTTA 58.562 38.462 0.00 0.00 0.00 2.10
2832 4668 6.287525 GCATACTTCAGCTCTTAATCCTCTT 58.712 40.000 0.00 0.00 0.00 2.85
2833 4669 5.221621 GGCATACTTCAGCTCTTAATCCTCT 60.222 44.000 0.00 0.00 0.00 3.69
2834 4670 4.994217 GGCATACTTCAGCTCTTAATCCTC 59.006 45.833 0.00 0.00 0.00 3.71
2835 4671 4.657969 AGGCATACTTCAGCTCTTAATCCT 59.342 41.667 0.00 0.00 0.00 3.24
2836 4672 4.967036 AGGCATACTTCAGCTCTTAATCC 58.033 43.478 0.00 0.00 0.00 3.01
2837 4673 5.637387 GCTAGGCATACTTCAGCTCTTAATC 59.363 44.000 0.00 0.00 0.00 1.75
2838 4674 5.512232 GGCTAGGCATACTTCAGCTCTTAAT 60.512 44.000 12.16 0.00 32.78 1.40
2839 4675 4.202264 GGCTAGGCATACTTCAGCTCTTAA 60.202 45.833 12.16 0.00 32.78 1.85
2840 4676 3.322254 GGCTAGGCATACTTCAGCTCTTA 59.678 47.826 12.16 0.00 32.78 2.10
2841 4677 2.103941 GGCTAGGCATACTTCAGCTCTT 59.896 50.000 12.16 0.00 32.78 2.85
2842 4678 1.691434 GGCTAGGCATACTTCAGCTCT 59.309 52.381 12.16 0.00 32.78 4.09
2843 4679 1.691434 AGGCTAGGCATACTTCAGCTC 59.309 52.381 19.70 0.00 32.78 4.09
2844 4680 1.799933 AGGCTAGGCATACTTCAGCT 58.200 50.000 19.70 0.00 32.78 4.24
2845 4681 2.216898 CAAGGCTAGGCATACTTCAGC 58.783 52.381 19.70 0.00 0.00 4.26
2846 4682 3.118629 TGACAAGGCTAGGCATACTTCAG 60.119 47.826 19.70 0.00 0.00 3.02
2847 4683 2.837591 TGACAAGGCTAGGCATACTTCA 59.162 45.455 19.70 10.07 0.00 3.02
2848 4684 3.543680 TGACAAGGCTAGGCATACTTC 57.456 47.619 19.70 7.64 0.00 3.01
2849 4685 4.164988 AGATTGACAAGGCTAGGCATACTT 59.835 41.667 19.70 0.41 0.00 2.24
2850 4686 3.713764 AGATTGACAAGGCTAGGCATACT 59.286 43.478 19.70 3.43 0.00 2.12
2851 4687 3.812053 CAGATTGACAAGGCTAGGCATAC 59.188 47.826 19.70 7.37 0.00 2.39
2852 4688 3.455910 ACAGATTGACAAGGCTAGGCATA 59.544 43.478 19.70 0.00 0.00 3.14
2853 4689 2.240667 ACAGATTGACAAGGCTAGGCAT 59.759 45.455 19.70 3.00 0.00 4.40
2854 4690 1.630369 ACAGATTGACAAGGCTAGGCA 59.370 47.619 19.70 0.00 0.00 4.75
2855 4691 2.409948 ACAGATTGACAAGGCTAGGC 57.590 50.000 8.55 8.55 0.00 3.93
2856 4692 5.674525 TGATAACAGATTGACAAGGCTAGG 58.325 41.667 0.00 0.00 0.00 3.02
2857 4693 6.293298 GCATGATAACAGATTGACAAGGCTAG 60.293 42.308 0.00 0.00 0.00 3.42
2858 4694 5.528690 GCATGATAACAGATTGACAAGGCTA 59.471 40.000 0.00 0.00 0.00 3.93
2859 4695 4.337555 GCATGATAACAGATTGACAAGGCT 59.662 41.667 0.00 0.00 0.00 4.58
2860 4696 4.337555 AGCATGATAACAGATTGACAAGGC 59.662 41.667 0.00 0.00 0.00 4.35
2861 4697 5.587443 TCAGCATGATAACAGATTGACAAGG 59.413 40.000 0.00 0.00 42.56 3.61
2862 4698 6.673154 TCAGCATGATAACAGATTGACAAG 57.327 37.500 0.00 0.00 42.56 3.16
2878 4714 5.396484 CAAGAAAACATAGTGGTCAGCATG 58.604 41.667 0.00 0.00 37.54 4.06
2879 4715 4.082571 GCAAGAAAACATAGTGGTCAGCAT 60.083 41.667 0.00 0.00 0.00 3.79
2880 4716 3.253188 GCAAGAAAACATAGTGGTCAGCA 59.747 43.478 0.00 0.00 0.00 4.41
2881 4717 3.253188 TGCAAGAAAACATAGTGGTCAGC 59.747 43.478 0.00 0.00 0.00 4.26
2882 4718 4.275689 TGTGCAAGAAAACATAGTGGTCAG 59.724 41.667 0.00 0.00 0.00 3.51
2883 4719 4.203226 TGTGCAAGAAAACATAGTGGTCA 58.797 39.130 0.00 0.00 0.00 4.02
2884 4720 4.829064 TGTGCAAGAAAACATAGTGGTC 57.171 40.909 0.00 0.00 0.00 4.02
2885 4721 6.892658 TTATGTGCAAGAAAACATAGTGGT 57.107 33.333 0.00 0.00 39.68 4.16
2886 4722 9.507280 CTATTTATGTGCAAGAAAACATAGTGG 57.493 33.333 0.00 0.00 39.68 4.00
2891 4727 9.013229 TCTGACTATTTATGTGCAAGAAAACAT 57.987 29.630 0.00 0.00 40.13 2.71
2892 4728 8.389779 TCTGACTATTTATGTGCAAGAAAACA 57.610 30.769 0.00 0.00 0.00 2.83
2893 4729 9.677567 TTTCTGACTATTTATGTGCAAGAAAAC 57.322 29.630 0.00 0.00 0.00 2.43
2894 4730 9.677567 GTTTCTGACTATTTATGTGCAAGAAAA 57.322 29.630 3.98 0.00 0.00 2.29
2895 4731 8.296713 GGTTTCTGACTATTTATGTGCAAGAAA 58.703 33.333 0.00 0.00 0.00 2.52
2896 4732 7.094377 GGGTTTCTGACTATTTATGTGCAAGAA 60.094 37.037 0.00 0.00 0.00 2.52
2897 4733 6.374333 GGGTTTCTGACTATTTATGTGCAAGA 59.626 38.462 0.00 0.00 0.00 3.02
2898 4734 6.150976 TGGGTTTCTGACTATTTATGTGCAAG 59.849 38.462 0.00 0.00 0.00 4.01
2899 4735 6.007076 TGGGTTTCTGACTATTTATGTGCAA 58.993 36.000 0.00 0.00 0.00 4.08
2900 4736 5.565509 TGGGTTTCTGACTATTTATGTGCA 58.434 37.500 0.00 0.00 0.00 4.57
2901 4737 6.699575 ATGGGTTTCTGACTATTTATGTGC 57.300 37.500 0.00 0.00 0.00 4.57
2907 4743 8.971073 CCAGAATTTATGGGTTTCTGACTATTT 58.029 33.333 12.21 0.00 45.88 1.40
2908 4744 8.336235 TCCAGAATTTATGGGTTTCTGACTATT 58.664 33.333 10.07 0.00 45.88 1.73
2909 4745 7.872138 TCCAGAATTTATGGGTTTCTGACTAT 58.128 34.615 10.07 0.00 45.88 2.12
2910 4746 7.265599 TCCAGAATTTATGGGTTTCTGACTA 57.734 36.000 10.07 0.00 45.88 2.59
2911 4747 6.139679 TCCAGAATTTATGGGTTTCTGACT 57.860 37.500 10.07 0.00 45.88 3.41
2912 4748 6.834168 TTCCAGAATTTATGGGTTTCTGAC 57.166 37.500 10.07 0.00 45.88 3.51
2913 4749 8.434589 AAATTCCAGAATTTATGGGTTTCTGA 57.565 30.769 15.04 0.00 45.93 3.27
2929 4765 9.989296 TGGATTTAAGAAATAGGAAATTCCAGA 57.011 29.630 15.21 1.75 39.61 3.86
2962 4798 9.790389 CAGTCGAGAAGTAGTATGTAGAAAATT 57.210 33.333 0.00 0.00 0.00 1.82
2963 4799 8.958506 ACAGTCGAGAAGTAGTATGTAGAAAAT 58.041 33.333 0.00 0.00 0.00 1.82
2964 4800 8.235226 CACAGTCGAGAAGTAGTATGTAGAAAA 58.765 37.037 0.00 0.00 0.00 2.29
2965 4801 7.605309 TCACAGTCGAGAAGTAGTATGTAGAAA 59.395 37.037 0.00 0.00 0.00 2.52
2966 4802 7.101700 TCACAGTCGAGAAGTAGTATGTAGAA 58.898 38.462 0.00 0.00 0.00 2.10
2967 4803 6.637657 TCACAGTCGAGAAGTAGTATGTAGA 58.362 40.000 0.00 0.00 0.00 2.59
2968 4804 6.905544 TCACAGTCGAGAAGTAGTATGTAG 57.094 41.667 0.00 0.00 0.00 2.74
2969 4805 6.093219 GGTTCACAGTCGAGAAGTAGTATGTA 59.907 42.308 0.00 0.00 0.00 2.29
2970 4806 5.106237 GGTTCACAGTCGAGAAGTAGTATGT 60.106 44.000 0.00 0.00 0.00 2.29
2971 4807 5.124138 AGGTTCACAGTCGAGAAGTAGTATG 59.876 44.000 0.00 0.00 0.00 2.39
2972 4808 5.254901 AGGTTCACAGTCGAGAAGTAGTAT 58.745 41.667 0.00 0.00 0.00 2.12
2973 4809 4.649692 AGGTTCACAGTCGAGAAGTAGTA 58.350 43.478 0.00 0.00 0.00 1.82
2974 4810 3.488363 AGGTTCACAGTCGAGAAGTAGT 58.512 45.455 0.00 0.00 0.00 2.73
2975 4811 3.502595 TGAGGTTCACAGTCGAGAAGTAG 59.497 47.826 0.00 0.00 0.00 2.57
2976 4812 3.483421 TGAGGTTCACAGTCGAGAAGTA 58.517 45.455 0.00 0.00 0.00 2.24
2977 4813 2.307768 TGAGGTTCACAGTCGAGAAGT 58.692 47.619 0.00 0.00 0.00 3.01
2978 4814 3.312828 CTTGAGGTTCACAGTCGAGAAG 58.687 50.000 0.00 0.00 0.00 2.85
2979 4815 2.545952 GCTTGAGGTTCACAGTCGAGAA 60.546 50.000 0.00 0.00 0.00 2.87
2980 4816 1.000163 GCTTGAGGTTCACAGTCGAGA 60.000 52.381 0.00 0.00 0.00 4.04
2981 4817 1.000283 AGCTTGAGGTTCACAGTCGAG 60.000 52.381 0.00 0.00 0.00 4.04
2982 4818 1.040646 AGCTTGAGGTTCACAGTCGA 58.959 50.000 0.00 0.00 0.00 4.20
2983 4819 2.029828 AGTAGCTTGAGGTTCACAGTCG 60.030 50.000 0.00 0.00 0.00 4.18
2984 4820 3.669251 AGTAGCTTGAGGTTCACAGTC 57.331 47.619 0.00 0.00 0.00 3.51
2985 4821 5.246203 TCATAAGTAGCTTGAGGTTCACAGT 59.754 40.000 0.00 0.00 0.00 3.55
2986 4822 5.724328 TCATAAGTAGCTTGAGGTTCACAG 58.276 41.667 0.00 0.00 0.00 3.66
2987 4823 5.724328 CTCATAAGTAGCTTGAGGTTCACA 58.276 41.667 4.69 0.00 34.55 3.58
2994 4830 4.764172 AGCAACCTCATAAGTAGCTTGAG 58.236 43.478 5.52 5.52 37.27 3.02
2995 4831 4.826274 AGCAACCTCATAAGTAGCTTGA 57.174 40.909 0.00 0.00 0.00 3.02
2996 4832 7.928706 AGTATTAGCAACCTCATAAGTAGCTTG 59.071 37.037 0.00 0.00 32.49 4.01
2997 4833 8.024145 AGTATTAGCAACCTCATAAGTAGCTT 57.976 34.615 0.00 0.00 32.49 3.74
2998 4834 7.604657 AGTATTAGCAACCTCATAAGTAGCT 57.395 36.000 0.00 0.00 34.84 3.32
2999 4835 7.711339 ACAAGTATTAGCAACCTCATAAGTAGC 59.289 37.037 0.00 0.00 0.00 3.58
3000 4836 9.601217 AACAAGTATTAGCAACCTCATAAGTAG 57.399 33.333 0.00 0.00 0.00 2.57
3001 4837 9.953565 AAACAAGTATTAGCAACCTCATAAGTA 57.046 29.630 0.00 0.00 0.00 2.24
3002 4838 8.863872 AAACAAGTATTAGCAACCTCATAAGT 57.136 30.769 0.00 0.00 0.00 2.24
3003 4839 8.398665 GGAAACAAGTATTAGCAACCTCATAAG 58.601 37.037 0.00 0.00 0.00 1.73
3004 4840 7.338449 GGGAAACAAGTATTAGCAACCTCATAA 59.662 37.037 0.00 0.00 0.00 1.90
3005 4841 6.826741 GGGAAACAAGTATTAGCAACCTCATA 59.173 38.462 0.00 0.00 0.00 2.15
3006 4842 5.652452 GGGAAACAAGTATTAGCAACCTCAT 59.348 40.000 0.00 0.00 0.00 2.90
3007 4843 5.007682 GGGAAACAAGTATTAGCAACCTCA 58.992 41.667 0.00 0.00 0.00 3.86
3008 4844 4.398358 GGGGAAACAAGTATTAGCAACCTC 59.602 45.833 0.00 0.00 0.00 3.85
3009 4845 4.341487 GGGGAAACAAGTATTAGCAACCT 58.659 43.478 0.00 0.00 0.00 3.50
3010 4846 4.713824 GGGGAAACAAGTATTAGCAACC 57.286 45.455 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.