Multiple sequence alignment - TraesCS3A01G427100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G427100 chr3A 100.000 5065 0 0 1 5065 670552604 670547540 0.000000e+00 9354.0
1 TraesCS3A01G427100 chr3A 97.143 105 3 0 4616 4720 670547894 670547790 1.450000e-40 178.0
2 TraesCS3A01G427100 chr3A 97.143 105 3 0 4711 4815 670547989 670547885 1.450000e-40 178.0
3 TraesCS3A01G427100 chr3B 91.346 3513 192 52 768 4200 706760701 706757221 0.000000e+00 4700.0
4 TraesCS3A01G427100 chr3B 94.335 2136 96 9 2262 4378 706191127 706188998 0.000000e+00 3251.0
5 TraesCS3A01G427100 chr3B 86.860 860 46 27 1009 1840 706192253 706191433 0.000000e+00 900.0
6 TraesCS3A01G427100 chr3B 93.146 321 22 0 1864 2184 706191446 706191126 5.940000e-129 472.0
7 TraesCS3A01G427100 chr3B 91.589 214 16 2 4335 4546 706757198 706756985 1.380000e-75 294.0
8 TraesCS3A01G427100 chr3B 91.284 218 9 6 4834 5050 706187699 706187491 6.420000e-74 289.0
9 TraesCS3A01G427100 chr3B 91.597 119 8 2 4705 4822 772395227 772395344 4.060000e-36 163.0
10 TraesCS3A01G427100 chr3B 100.000 38 0 0 8 45 706761906 706761869 2.530000e-08 71.3
11 TraesCS3A01G427100 chr3D 94.546 2017 77 13 2191 4200 535404904 535402914 0.000000e+00 3085.0
12 TraesCS3A01G427100 chr3D 87.689 1324 73 27 767 2042 535406207 535404926 0.000000e+00 1459.0
13 TraesCS3A01G427100 chr3D 81.395 731 90 28 1 721 535406903 535406209 5.730000e-154 555.0
14 TraesCS3A01G427100 chr3D 92.884 267 17 2 4335 4599 535402891 535402625 2.210000e-103 387.0
15 TraesCS3A01G427100 chr3D 95.259 232 10 1 4834 5065 535402632 535402402 2.880000e-97 366.0
16 TraesCS3A01G427100 chr4D 91.473 129 10 1 4705 4833 145530436 145530309 5.210000e-40 176.0
17 TraesCS3A01G427100 chr4D 90.000 120 12 0 4601 4720 145530446 145530327 6.790000e-34 156.0
18 TraesCS3A01G427100 chr4D 92.661 109 6 2 4705 4813 496376482 496376376 6.790000e-34 156.0
19 TraesCS3A01G427100 chr4D 90.517 116 10 1 4603 4718 496376490 496376376 8.780000e-33 152.0
20 TraesCS3A01G427100 chr4D 79.144 187 32 7 561 744 356568068 356567886 6.890000e-24 122.0
21 TraesCS3A01G427100 chr4B 90.299 134 12 1 4705 4838 612497786 612497918 1.870000e-39 174.0
22 TraesCS3A01G427100 chr4B 78.912 147 28 3 564 709 440050763 440050619 4.170000e-16 97.1
23 TraesCS3A01G427100 chr7A 91.057 123 11 0 4711 4833 716713546 716713424 3.140000e-37 167.0
24 TraesCS3A01G427100 chr7A 89.256 121 13 0 4600 4720 716713562 716713442 8.780000e-33 152.0
25 TraesCS3A01G427100 chr7A 83.448 145 21 3 535 679 222639627 222639768 1.140000e-26 132.0
26 TraesCS3A01G427100 chr7A 89.474 95 10 0 4599 4693 676427695 676427789 2.480000e-23 121.0
27 TraesCS3A01G427100 chr2B 80.751 213 38 3 527 738 377106106 377105896 4.060000e-36 163.0
28 TraesCS3A01G427100 chr2B 82.353 85 12 3 660 742 393021334 393021417 2.530000e-08 71.3
29 TraesCS3A01G427100 chr5B 88.372 129 14 1 4705 4833 319798910 319798783 2.440000e-33 154.0
30 TraesCS3A01G427100 chr5B 85.124 121 18 0 4600 4720 319798921 319798801 1.910000e-24 124.0
31 TraesCS3A01G427100 chr4A 81.026 195 33 4 552 744 108868430 108868622 8.780000e-33 152.0
32 TraesCS3A01G427100 chr7D 80.100 201 36 4 552 751 431938068 431937871 4.090000e-31 147.0
33 TraesCS3A01G427100 chr7D 80.328 122 19 2 475 596 249496772 249496888 2.510000e-13 87.9
34 TraesCS3A01G427100 chr2A 95.556 90 4 0 4745 4834 768201952 768201863 1.470000e-30 145.0
35 TraesCS3A01G427100 chr2A 85.950 121 17 0 4600 4720 720228964 720228844 4.120000e-26 130.0
36 TraesCS3A01G427100 chrUn 95.506 89 4 0 4745 4833 333814955 333814867 5.290000e-30 143.0
37 TraesCS3A01G427100 chrUn 95.775 71 3 0 4650 4720 333814955 333814885 1.150000e-21 115.0
38 TraesCS3A01G427100 chrUn 95.775 71 3 0 4650 4720 333817712 333817642 1.150000e-21 115.0
39 TraesCS3A01G427100 chr7B 80.769 182 25 9 565 743 17851577 17851403 3.180000e-27 134.0
40 TraesCS3A01G427100 chr6D 82.734 139 17 6 552 687 370775766 370775900 3.200000e-22 117.0
41 TraesCS3A01G427100 chr6B 76.415 212 43 5 503 709 619518850 619518641 1.930000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G427100 chr3A 670547540 670552604 5064 True 9354.000000 9354 100.000000 1 5065 1 chr3A.!!$R1 5064
1 TraesCS3A01G427100 chr3B 706756985 706761906 4921 True 1688.433333 4700 94.311667 8 4546 3 chr3B.!!$R2 4538
2 TraesCS3A01G427100 chr3B 706187491 706192253 4762 True 1228.000000 3251 91.406250 1009 5050 4 chr3B.!!$R1 4041
3 TraesCS3A01G427100 chr3D 535402402 535406903 4501 True 1170.400000 3085 90.354600 1 5065 5 chr3D.!!$R1 5064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 435 0.172803 AAGTTACTAGCTCACCCGCG 59.827 55.0 0.00 0.00 34.40 6.46 F
940 1509 0.324275 GATTTAACCCCAGCCAGCCA 60.324 55.0 0.00 0.00 0.00 4.75 F
1656 2288 0.744874 TCATAGTCGTAGGCAGTGGC 59.255 55.0 9.02 9.02 40.13 5.01 F
1961 2627 0.039708 GAAGCTGCCTGAAGTTGTGC 60.040 55.0 0.00 0.00 0.00 4.57 F
3567 4249 0.032952 GGAAGTGTGACTACGTGGCA 59.967 55.0 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2354 0.108615 CTGTAGTGAAGCACCCCGAG 60.109 60.000 0.00 0.0 34.49 4.63 R
1771 2403 1.072489 TCACCAACCAGACCGCATTAA 59.928 47.619 0.00 0.0 0.00 1.40 R
3127 3809 0.392193 AGGAAGCGCTTCACTCCATG 60.392 55.000 41.60 0.0 41.20 3.66 R
3870 4552 1.070786 GTCGGTCACCCACACATGT 59.929 57.895 0.00 0.0 0.00 3.21 R
4719 6531 0.036765 TTAAGGGCCGCCGCTATATG 60.037 55.000 2.55 0.0 33.36 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.944048 TGGTGTGGACTATTCATATCACG 58.056 43.478 0.00 0.00 0.00 4.35
46 47 3.741344 GGTGTGGACTATTCATATCACGC 59.259 47.826 0.00 0.00 35.62 5.34
47 48 3.425525 GTGTGGACTATTCATATCACGCG 59.574 47.826 3.53 3.53 0.00 6.01
48 49 3.316868 TGTGGACTATTCATATCACGCGA 59.683 43.478 15.93 0.00 0.00 5.87
49 50 3.914966 GTGGACTATTCATATCACGCGAG 59.085 47.826 15.93 4.59 0.00 5.03
50 51 3.057526 TGGACTATTCATATCACGCGAGG 60.058 47.826 15.93 4.29 0.00 4.63
51 52 2.917971 GACTATTCATATCACGCGAGGC 59.082 50.000 15.93 0.00 0.00 4.70
68 69 2.643044 GCGAGACACGACATGACTC 58.357 57.895 0.00 0.00 43.97 3.36
72 73 0.805614 AGACACGACATGACTCCTCG 59.194 55.000 0.00 0.00 0.00 4.63
74 75 1.199327 GACACGACATGACTCCTCGAA 59.801 52.381 9.36 0.00 0.00 3.71
80 81 3.304559 CGACATGACTCCTCGAAACATTC 59.695 47.826 0.00 0.00 0.00 2.67
129 134 8.865001 GTTTAGTCTTTTGTGTAGCTAGAGATG 58.135 37.037 0.00 0.00 0.00 2.90
170 296 6.498304 ACTTCATGTGACTTTAGCTTTGTTG 58.502 36.000 0.00 0.00 0.00 3.33
172 298 6.449635 TCATGTGACTTTAGCTTTGTTGTT 57.550 33.333 0.00 0.00 0.00 2.83
247 433 3.181489 CCAGTAAGTTACTAGCTCACCCG 60.181 52.174 15.13 0.35 37.23 5.28
248 434 2.426381 AGTAAGTTACTAGCTCACCCGC 59.574 50.000 14.00 0.00 37.23 6.13
249 435 0.172803 AAGTTACTAGCTCACCCGCG 59.827 55.000 0.00 0.00 34.40 6.46
250 436 0.679002 AGTTACTAGCTCACCCGCGA 60.679 55.000 8.23 0.00 34.40 5.87
255 441 0.721718 CTAGCTCACCCGCGAAAAAG 59.278 55.000 8.23 0.27 34.40 2.27
263 449 2.280445 CACCCGCGAAAAAGAAACAAAC 59.720 45.455 8.23 0.00 0.00 2.93
270 461 6.012482 CGCGAAAAAGAAACAAACAAACAAT 58.988 32.000 0.00 0.00 0.00 2.71
305 496 4.359706 AGTTTGAATCGTTGGCAAAGAAC 58.640 39.130 19.29 15.78 32.76 3.01
307 498 3.624326 TGAATCGTTGGCAAAGAACAG 57.376 42.857 19.29 0.00 0.00 3.16
308 499 2.948979 TGAATCGTTGGCAAAGAACAGT 59.051 40.909 19.29 5.93 0.00 3.55
392 583 4.098807 GGAAAAGACAAGGCACAAAGGTAA 59.901 41.667 0.00 0.00 0.00 2.85
405 596 6.075280 GCACAAAGGTAAACACTTGTATACG 58.925 40.000 0.00 0.00 0.00 3.06
415 606 2.158841 CACTTGTATACGCACCAACACC 59.841 50.000 0.00 0.00 0.00 4.16
431 622 4.351054 CCCACCCTCGCAAGCCTT 62.351 66.667 0.00 0.00 37.18 4.35
441 632 0.453390 CGCAAGCCTTCAATCCTTCC 59.547 55.000 0.00 0.00 0.00 3.46
472 663 9.801873 AGATTGTTTTATAAACATGGCATACAC 57.198 29.630 0.00 0.00 0.00 2.90
473 664 9.579768 GATTGTTTTATAAACATGGCATACACA 57.420 29.630 0.00 0.00 0.00 3.72
474 665 8.749841 TTGTTTTATAAACATGGCATACACAC 57.250 30.769 0.00 0.00 0.00 3.82
475 666 7.886338 TGTTTTATAAACATGGCATACACACA 58.114 30.769 0.00 0.00 0.00 3.72
477 668 9.197694 GTTTTATAAACATGGCATACACACAAA 57.802 29.630 0.00 0.00 0.00 2.83
478 669 9.935241 TTTTATAAACATGGCATACACACAAAT 57.065 25.926 0.00 0.00 0.00 2.32
479 670 8.923609 TTATAAACATGGCATACACACAAATG 57.076 30.769 0.00 0.00 0.00 2.32
480 671 3.235157 ACATGGCATACACACAAATGC 57.765 42.857 0.00 0.00 46.20 3.56
481 672 2.827322 ACATGGCATACACACAAATGCT 59.173 40.909 0.00 0.00 46.16 3.79
482 673 3.119388 ACATGGCATACACACAAATGCTC 60.119 43.478 0.00 0.00 46.16 4.26
483 674 2.512705 TGGCATACACACAAATGCTCA 58.487 42.857 7.18 1.86 46.16 4.26
484 675 3.090790 TGGCATACACACAAATGCTCAT 58.909 40.909 7.18 0.00 46.16 2.90
485 676 4.268359 TGGCATACACACAAATGCTCATA 58.732 39.130 7.18 0.00 46.16 2.15
486 677 4.096231 TGGCATACACACAAATGCTCATAC 59.904 41.667 7.18 0.00 46.16 2.39
487 678 4.096231 GGCATACACACAAATGCTCATACA 59.904 41.667 7.18 0.00 46.16 2.29
488 679 5.221106 GGCATACACACAAATGCTCATACAT 60.221 40.000 7.18 0.00 46.16 2.29
489 680 6.017192 GGCATACACACAAATGCTCATACATA 60.017 38.462 7.18 0.00 46.16 2.29
490 681 6.852853 GCATACACACAAATGCTCATACATAC 59.147 38.462 0.21 0.00 44.08 2.39
491 682 5.469373 ACACACAAATGCTCATACATACG 57.531 39.130 0.00 0.00 0.00 3.06
492 683 4.201812 ACACACAAATGCTCATACATACGC 60.202 41.667 0.00 0.00 0.00 4.42
493 684 3.938334 ACACAAATGCTCATACATACGCA 59.062 39.130 0.00 0.00 36.75 5.24
494 685 4.201812 ACACAAATGCTCATACATACGCAC 60.202 41.667 0.00 0.00 34.93 5.34
495 686 3.938334 ACAAATGCTCATACATACGCACA 59.062 39.130 0.00 0.00 34.93 4.57
499 690 7.041167 ACAAATGCTCATACATACGCACAATAT 60.041 33.333 0.00 0.00 34.93 1.28
507 698 9.705290 TCATACATACGCACAATATATTCACTT 57.295 29.630 0.00 0.00 0.00 3.16
529 720 4.818534 ATATGAATTCGCGCAAGAACAT 57.181 36.364 8.75 9.72 43.02 2.71
533 724 0.729116 ATTCGCGCAAGAACATCCTG 59.271 50.000 8.75 0.00 43.02 3.86
537 728 1.377725 CGCAAGAACATCCTGCCCT 60.378 57.895 0.00 0.00 43.02 5.19
544 735 4.803329 AGAACATCCTGCCCTTATGAAT 57.197 40.909 0.00 0.00 0.00 2.57
547 738 5.132648 AGAACATCCTGCCCTTATGAATACA 59.867 40.000 0.00 0.00 0.00 2.29
549 740 5.564550 ACATCCTGCCCTTATGAATACATC 58.435 41.667 0.00 0.00 37.87 3.06
550 741 5.311649 ACATCCTGCCCTTATGAATACATCT 59.688 40.000 0.00 0.00 37.87 2.90
557 748 6.499699 TGCCCTTATGAATACATCTGAGAGAT 59.500 38.462 0.00 0.00 37.87 2.75
577 768 3.552132 TTAAGCCGGCACATCATCTTA 57.448 42.857 31.54 12.92 0.00 2.10
598 789 7.950512 TCTTAAGATTGATGAAGTTGCCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
601 792 5.916318 AGATTGATGAAGTTGCCAAAAACA 58.084 33.333 0.00 0.00 32.21 2.83
606 797 5.984926 TGATGAAGTTGCCAAAAACATCTTC 59.015 36.000 14.98 7.85 41.25 2.87
607 798 5.336150 TGAAGTTGCCAAAAACATCTTCA 57.664 34.783 11.32 11.32 45.07 3.02
608 799 5.916318 TGAAGTTGCCAAAAACATCTTCAT 58.084 33.333 11.32 0.00 43.64 2.57
615 806 5.471797 TGCCAAAAACATCTTCATAGTCGAA 59.528 36.000 0.00 0.00 0.00 3.71
616 807 6.150976 TGCCAAAAACATCTTCATAGTCGAAT 59.849 34.615 0.00 0.00 0.00 3.34
618 809 7.626240 GCCAAAAACATCTTCATAGTCGAATGA 60.626 37.037 0.00 0.00 34.07 2.57
622 813 7.763172 AACATCTTCATAGTCGAATGAGAAC 57.237 36.000 0.00 0.00 37.20 3.01
623 814 5.974158 ACATCTTCATAGTCGAATGAGAACG 59.026 40.000 0.00 0.00 37.20 3.95
626 817 5.354513 TCTTCATAGTCGAATGAGAACGTCT 59.645 40.000 0.00 0.00 37.20 4.18
627 818 5.158101 TCATAGTCGAATGAGAACGTCTC 57.842 43.478 0.00 7.74 43.65 3.36
629 820 2.438411 AGTCGAATGAGAACGTCTCCT 58.562 47.619 11.01 0.00 42.73 3.69
630 821 2.820787 AGTCGAATGAGAACGTCTCCTT 59.179 45.455 11.01 8.26 42.73 3.36
636 827 1.613925 TGAGAACGTCTCCTTCCACTG 59.386 52.381 11.01 0.00 42.73 3.66
645 836 0.531974 TCCTTCCACTGAACGCACAC 60.532 55.000 0.00 0.00 0.00 3.82
648 839 0.393132 TTCCACTGAACGCACACCAA 60.393 50.000 0.00 0.00 0.00 3.67
700 891 1.194772 GAGCACCGCTGTCAACTTTAC 59.805 52.381 0.00 0.00 39.88 2.01
715 906 4.946784 ACTTTACGACTTGAATCATGGC 57.053 40.909 1.24 0.00 0.00 4.40
721 912 1.033746 ACTTGAATCATGGCGGGCTG 61.034 55.000 2.38 0.00 0.00 4.85
722 913 1.731433 CTTGAATCATGGCGGGCTGG 61.731 60.000 2.38 0.00 0.00 4.85
723 914 2.908940 GAATCATGGCGGGCTGGG 60.909 66.667 2.38 0.00 0.00 4.45
724 915 3.419580 AATCATGGCGGGCTGGGA 61.420 61.111 2.38 0.00 0.00 4.37
725 916 2.703675 GAATCATGGCGGGCTGGGAT 62.704 60.000 2.38 0.45 0.00 3.85
727 918 2.129555 ATCATGGCGGGCTGGGATAC 62.130 60.000 2.38 0.00 0.00 2.24
744 1285 1.167851 TACCACTGTCCTCGTAACCG 58.832 55.000 0.00 0.00 0.00 4.44
746 1287 1.167851 CCACTGTCCTCGTAACCGTA 58.832 55.000 0.00 0.00 35.01 4.02
751 1292 2.227388 CTGTCCTCGTAACCGTACAACT 59.773 50.000 0.00 0.00 35.01 3.16
755 1296 2.589014 CTCGTAACCGTACAACTGGTC 58.411 52.381 0.00 0.00 37.54 4.02
761 1302 1.530013 CCGTACAACTGGTCCGTCCT 61.530 60.000 0.00 0.00 37.07 3.85
764 1305 1.617357 GTACAACTGGTCCGTCCTTCT 59.383 52.381 0.00 0.00 37.07 2.85
765 1306 0.393077 ACAACTGGTCCGTCCTTCTG 59.607 55.000 0.00 0.00 37.07 3.02
773 1314 3.056107 TGGTCCGTCCTTCTGTTTAGATG 60.056 47.826 0.00 0.00 37.07 2.90
777 1318 4.039973 TCCGTCCTTCTGTTTAGATGTTGT 59.960 41.667 0.00 0.00 31.81 3.32
780 1349 5.465390 CGTCCTTCTGTTTAGATGTTGTCAA 59.535 40.000 0.00 0.00 31.81 3.18
785 1354 6.844696 TCTGTTTAGATGTTGTCAACTCAC 57.155 37.500 16.45 7.95 0.00 3.51
790 1359 8.147704 TGTTTAGATGTTGTCAACTCACTATGA 58.852 33.333 16.45 6.93 0.00 2.15
792 1361 8.534333 TTAGATGTTGTCAACTCACTATGAAC 57.466 34.615 16.45 0.00 0.00 3.18
858 1427 2.619147 TGGCACACAATAAATGCATGC 58.381 42.857 11.82 11.82 41.27 4.06
859 1428 2.234168 TGGCACACAATAAATGCATGCT 59.766 40.909 20.33 0.40 41.00 3.79
940 1509 0.324275 GATTTAACCCCAGCCAGCCA 60.324 55.000 0.00 0.00 0.00 4.75
942 1511 3.583882 TTAACCCCAGCCAGCCAGC 62.584 63.158 0.00 0.00 0.00 4.85
987 1560 2.283966 ATATCCCCCTCCCTCGCG 60.284 66.667 0.00 0.00 0.00 5.87
997 1570 4.742201 CCCTCGCGTCACCCACAG 62.742 72.222 5.77 0.00 0.00 3.66
1615 2247 2.619074 CCCACCCAATCTCCAAGTCTTC 60.619 54.545 0.00 0.00 0.00 2.87
1656 2288 0.744874 TCATAGTCGTAGGCAGTGGC 59.255 55.000 9.02 9.02 40.13 5.01
1682 2314 0.809385 GTCTACGCACTGTGGCTCTA 59.191 55.000 10.21 0.00 0.00 2.43
1690 2322 2.354103 GCACTGTGGCTCTATTGACTCA 60.354 50.000 10.21 0.00 0.00 3.41
1691 2323 3.519579 CACTGTGGCTCTATTGACTCAG 58.480 50.000 0.00 0.00 0.00 3.35
1708 2340 2.280052 GGCTCAGCTCGGATCTGC 60.280 66.667 4.01 0.00 0.00 4.26
1720 2352 3.771110 GATCTGCCCCTGCCTGCTC 62.771 68.421 0.00 0.00 36.33 4.26
1802 2438 4.023707 GTCTGGTTGGTGATCTTTGTCTTG 60.024 45.833 0.00 0.00 0.00 3.02
1840 2503 6.257423 CAAAATTGTTTTTGGGTCTTTCTGC 58.743 36.000 3.78 0.00 45.18 4.26
1844 2507 3.960102 TGTTTTTGGGTCTTTCTGCATCT 59.040 39.130 0.00 0.00 0.00 2.90
1845 2508 4.202141 TGTTTTTGGGTCTTTCTGCATCTG 60.202 41.667 0.00 0.00 0.00 2.90
1847 2510 4.365514 TTTGGGTCTTTCTGCATCTGTA 57.634 40.909 0.00 0.00 0.00 2.74
1896 2562 6.554334 TGTGGTTAAATTACTCTTCTGTGC 57.446 37.500 0.00 0.00 0.00 4.57
1910 2576 1.842698 CTGTGCTGACTGCTGCTGTG 61.843 60.000 17.10 4.87 43.37 3.66
1915 2581 2.111878 GACTGCTGCTGTGGGTGT 59.888 61.111 17.10 0.00 0.00 4.16
1952 2618 1.299562 CTGCTCAGTGAAGCTGCCTG 61.300 60.000 13.40 4.26 44.66 4.85
1961 2627 0.039708 GAAGCTGCCTGAAGTTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
1983 2649 5.486063 TGCTTACTGGATACTAAAACTGGGA 59.514 40.000 0.00 0.00 37.61 4.37
1987 2653 6.176014 ACTGGATACTAAAACTGGGATAGC 57.824 41.667 0.00 0.00 37.61 2.97
2017 2683 9.554395 TGTATTTAACACAATCTCTTTCAGACA 57.446 29.630 0.00 0.00 29.99 3.41
2022 2688 6.382869 ACACAATCTCTTTCAGACAAAAGG 57.617 37.500 0.00 0.00 36.97 3.11
2054 2720 2.264794 GTGATCGTTGGAGCCCGT 59.735 61.111 0.00 0.00 0.00 5.28
2080 2746 4.468153 TGCTTGGGTAAAACTGGAAAGTTT 59.532 37.500 0.00 0.00 43.04 2.66
2081 2747 4.808895 GCTTGGGTAAAACTGGAAAGTTTG 59.191 41.667 4.71 0.00 40.67 2.93
2110 2776 5.649831 AGTGCCTTCAAAACAGATCCTAATC 59.350 40.000 0.00 0.00 0.00 1.75
2166 2832 6.538381 TGCTTATGAGTCGCTGAATTTCATTA 59.462 34.615 0.00 0.00 31.49 1.90
2171 2843 7.065216 TGAGTCGCTGAATTTCATTAAAGAG 57.935 36.000 0.00 0.00 0.00 2.85
2200 2872 5.183713 TGAATTTCGCTCCTGTTCATGAAAT 59.816 36.000 10.35 0.00 37.57 2.17
2476 3152 7.275920 AGACTGAAAAACTGTAACTCATGACT 58.724 34.615 0.00 0.00 0.00 3.41
2520 3198 5.302059 TGCTAGGTGTTCACCTATCAGTATC 59.698 44.000 25.66 12.85 41.15 2.24
2526 3204 5.127194 GTGTTCACCTATCAGTATCTGTGGA 59.873 44.000 10.74 0.00 32.61 4.02
2535 3213 8.811017 CCTATCAGTATCTGTGGATATTCTTGT 58.189 37.037 0.00 0.00 36.88 3.16
2597 3277 8.978539 CAATCTAGCTTGTATTTTACGCTATCA 58.021 33.333 0.00 0.00 33.28 2.15
2607 3287 7.753580 TGTATTTTACGCTATCATCCAGTATCG 59.246 37.037 0.00 0.00 0.00 2.92
2633 3314 1.550524 TGTCTCCAGTCCATTCCGAAG 59.449 52.381 0.00 0.00 0.00 3.79
2738 3419 3.643320 TGGTTCCATTTGGCAATGTAACA 59.357 39.130 0.00 0.00 39.72 2.41
2865 3546 0.394762 GGCAGCCCAATCATGTCTCA 60.395 55.000 0.00 0.00 0.00 3.27
2978 3659 2.749600 AGAGTCTGAGCTGGATGATGT 58.250 47.619 0.00 0.00 0.00 3.06
3127 3809 2.467826 GCGCTGGAGTTGATGAGGC 61.468 63.158 0.00 0.00 0.00 4.70
3289 3971 3.448093 TGTCCCCATTTATCAGTTGCA 57.552 42.857 0.00 0.00 0.00 4.08
3390 4072 3.261897 CACTGTCTCCAATCTGTACCCTT 59.738 47.826 0.00 0.00 0.00 3.95
3405 4087 1.383799 CCTTGGAGCCATCAACCCA 59.616 57.895 0.00 0.00 0.00 4.51
3567 4249 0.032952 GGAAGTGTGACTACGTGGCA 59.967 55.000 0.00 0.00 0.00 4.92
3652 4334 4.241555 CCCCCATCTCCGCCTTCG 62.242 72.222 0.00 0.00 0.00 3.79
3688 4370 1.575576 CTCGTCGTTGTCGGAGGAGT 61.576 60.000 3.96 0.00 37.69 3.85
3720 4402 4.834453 CGCTCTCCCAGGCTGCTG 62.834 72.222 9.56 2.12 0.00 4.41
3744 4426 2.283145 AGTTCAGCAGCAGGAACATT 57.717 45.000 23.93 8.57 44.46 2.71
3792 4474 3.467226 CGGAGCATGTACCGGGGT 61.467 66.667 19.60 0.00 44.59 4.95
4041 4729 0.677288 GGGGTTAGTTTGGTGGTTGC 59.323 55.000 0.00 0.00 0.00 4.17
4073 4761 3.829601 AGAACTTTGTTTTGGGTGTGTGA 59.170 39.130 0.00 0.00 0.00 3.58
4103 4791 4.335416 AGACTGAATGGGTTGTGTATTGG 58.665 43.478 0.00 0.00 0.00 3.16
4123 4812 2.584791 GTGGATGTGCATTCGTTGTTC 58.415 47.619 0.00 0.00 0.00 3.18
4168 4857 2.675658 GGCCTATTTATGCCTGGGAA 57.324 50.000 0.00 0.00 44.46 3.97
4169 4858 2.239400 GGCCTATTTATGCCTGGGAAC 58.761 52.381 0.00 0.00 44.46 3.62
4189 4878 4.564782 ACCCATTGATCGCTCATATCAT 57.435 40.909 0.00 0.00 33.52 2.45
4190 4879 4.511527 ACCCATTGATCGCTCATATCATC 58.488 43.478 0.00 0.00 33.52 2.92
4191 4880 4.019950 ACCCATTGATCGCTCATATCATCA 60.020 41.667 0.00 0.00 33.52 3.07
4221 4910 3.604582 CTCCTTGAAGATCAACTGGGAC 58.395 50.000 0.00 0.00 32.21 4.46
4224 4913 3.604582 CTTGAAGATCAACTGGGACTCC 58.395 50.000 0.00 0.00 32.21 3.85
4230 4927 2.859165 TCAACTGGGACTCCATGAAC 57.141 50.000 0.00 0.00 43.11 3.18
4236 4933 1.780309 TGGGACTCCATGAACCAAAGT 59.220 47.619 0.00 0.00 38.32 2.66
4252 4950 3.308053 CCAAAGTCATGAGCTACACGATG 59.692 47.826 0.00 0.00 0.00 3.84
4261 4959 2.996621 GAGCTACACGATGAAAGCTGTT 59.003 45.455 16.99 0.00 39.19 3.16
4262 4960 3.403038 AGCTACACGATGAAAGCTGTTT 58.597 40.909 13.81 0.00 38.26 2.83
4263 4961 3.433615 AGCTACACGATGAAAGCTGTTTC 59.566 43.478 13.81 0.00 42.27 2.78
4274 4972 0.392193 AGCTGTTTCCTCCTGCATCG 60.392 55.000 0.00 0.00 0.00 3.84
4295 4993 3.055167 CGTATGGATGGATGGAGCCAATA 60.055 47.826 0.00 0.00 42.16 1.90
4337 5035 1.303643 GGGTCTTGTGCCCTCCAAG 60.304 63.158 0.00 0.00 42.81 3.61
4368 5067 4.287238 ACGAAAGTTAACCTGCAAACAG 57.713 40.909 0.88 0.00 46.40 3.16
4373 5072 8.311091 ACGAAAGTTAACCTGCAAACAGAAAAG 61.311 37.037 0.88 0.00 45.19 2.27
4400 6211 4.084118 GCAAACAGCAAACACACTTGAAAA 60.084 37.500 0.00 0.00 44.79 2.29
4531 6343 3.381590 GCAGTACCCCATCTTTCCATTTC 59.618 47.826 0.00 0.00 0.00 2.17
4537 6349 2.292455 CCCATCTTTCCATTTCCAGGGT 60.292 50.000 0.00 0.00 0.00 4.34
4599 6411 8.515414 ACAAAAACTACAGCCTGAAGAAATATC 58.485 33.333 0.00 0.00 0.00 1.63
4600 6412 8.514594 CAAAAACTACAGCCTGAAGAAATATCA 58.485 33.333 0.00 0.00 0.00 2.15
4601 6413 8.635765 AAAACTACAGCCTGAAGAAATATCAA 57.364 30.769 0.00 0.00 0.00 2.57
4602 6414 8.814038 AAACTACAGCCTGAAGAAATATCAAT 57.186 30.769 0.00 0.00 0.00 2.57
4603 6415 7.798596 ACTACAGCCTGAAGAAATATCAATG 57.201 36.000 0.00 0.00 0.00 2.82
4604 6416 7.341805 ACTACAGCCTGAAGAAATATCAATGT 58.658 34.615 0.00 0.00 0.00 2.71
4605 6417 7.831193 ACTACAGCCTGAAGAAATATCAATGTT 59.169 33.333 0.00 0.00 0.00 2.71
4606 6418 7.472334 ACAGCCTGAAGAAATATCAATGTTT 57.528 32.000 0.00 0.00 0.00 2.83
4607 6419 7.899973 ACAGCCTGAAGAAATATCAATGTTTT 58.100 30.769 0.00 0.00 0.00 2.43
4608 6420 9.023962 ACAGCCTGAAGAAATATCAATGTTTTA 57.976 29.630 0.00 0.00 0.00 1.52
4609 6421 9.859427 CAGCCTGAAGAAATATCAATGTTTTAA 57.141 29.630 0.00 0.00 0.00 1.52
4617 6429 9.418045 AGAAATATCAATGTTTTAAACAACGGG 57.582 29.630 14.70 5.10 45.86 5.28
4618 6430 7.589574 AATATCAATGTTTTAAACAACGGGC 57.410 32.000 14.70 0.00 45.86 6.13
4619 6431 4.657436 TCAATGTTTTAAACAACGGGCT 57.343 36.364 14.70 0.00 45.86 5.19
4620 6432 5.769484 TCAATGTTTTAAACAACGGGCTA 57.231 34.783 14.70 0.00 45.86 3.93
4621 6433 6.334102 TCAATGTTTTAAACAACGGGCTAT 57.666 33.333 14.70 0.00 45.86 2.97
4622 6434 6.153067 TCAATGTTTTAAACAACGGGCTATG 58.847 36.000 14.70 4.79 45.86 2.23
4623 6435 4.506886 TGTTTTAAACAACGGGCTATGG 57.493 40.909 8.17 0.00 38.72 2.74
4624 6436 3.247442 GTTTTAAACAACGGGCTATGGC 58.753 45.455 2.62 0.00 37.82 4.40
4625 6437 2.201921 TTAAACAACGGGCTATGGCA 57.798 45.000 2.58 0.00 40.87 4.92
4626 6438 2.428544 TAAACAACGGGCTATGGCAT 57.571 45.000 4.88 4.88 40.87 4.40
4627 6439 2.428544 AAACAACGGGCTATGGCATA 57.571 45.000 7.06 7.06 40.87 3.14
4628 6440 2.656947 AACAACGGGCTATGGCATAT 57.343 45.000 7.81 0.00 40.87 1.78
4629 6441 3.780804 AACAACGGGCTATGGCATATA 57.219 42.857 7.81 0.00 40.87 0.86
4630 6442 3.334583 ACAACGGGCTATGGCATATAG 57.665 47.619 7.81 0.00 40.87 1.31
4631 6443 2.009774 CAACGGGCTATGGCATATAGC 58.990 52.381 18.72 18.72 44.56 2.97
4632 6444 0.175760 ACGGGCTATGGCATATAGCG 59.824 55.000 19.65 12.68 45.83 4.26
4633 6445 0.459899 CGGGCTATGGCATATAGCGA 59.540 55.000 19.65 0.00 45.83 4.93
4634 6446 1.802880 CGGGCTATGGCATATAGCGAC 60.803 57.143 19.65 15.50 45.83 5.19
4635 6447 1.560923 GGCTATGGCATATAGCGACG 58.439 55.000 19.65 0.00 45.83 5.12
4636 6448 1.802880 GGCTATGGCATATAGCGACGG 60.803 57.143 19.65 0.00 45.83 4.79
4640 6452 2.657237 GCATATAGCGACGGCCCT 59.343 61.111 0.00 0.00 41.24 5.19
4641 6453 1.004918 GCATATAGCGACGGCCCTT 60.005 57.895 0.00 0.00 41.24 3.95
4642 6454 0.245539 GCATATAGCGACGGCCCTTA 59.754 55.000 0.00 0.00 41.24 2.69
4643 6455 1.337447 GCATATAGCGACGGCCCTTAA 60.337 52.381 0.00 0.00 41.24 1.85
4644 6456 2.868839 GCATATAGCGACGGCCCTTAAA 60.869 50.000 0.00 0.00 41.24 1.52
4645 6457 3.395639 CATATAGCGACGGCCCTTAAAA 58.604 45.455 0.00 0.00 41.24 1.52
4646 6458 2.406596 ATAGCGACGGCCCTTAAAAA 57.593 45.000 0.00 0.00 41.24 1.94
4647 6459 1.441738 TAGCGACGGCCCTTAAAAAC 58.558 50.000 0.00 0.00 41.24 2.43
4648 6460 0.535553 AGCGACGGCCCTTAAAAACA 60.536 50.000 0.00 0.00 41.24 2.83
4649 6461 0.109919 GCGACGGCCCTTAAAAACAG 60.110 55.000 0.00 0.00 0.00 3.16
4650 6462 0.109919 CGACGGCCCTTAAAAACAGC 60.110 55.000 0.00 0.00 0.00 4.40
4651 6463 1.244816 GACGGCCCTTAAAAACAGCT 58.755 50.000 0.00 0.00 0.00 4.24
4652 6464 2.429478 GACGGCCCTTAAAAACAGCTA 58.571 47.619 0.00 0.00 0.00 3.32
4653 6465 3.014623 GACGGCCCTTAAAAACAGCTAT 58.985 45.455 0.00 0.00 0.00 2.97
4654 6466 4.193865 GACGGCCCTTAAAAACAGCTATA 58.806 43.478 0.00 0.00 0.00 1.31
4655 6467 4.196971 ACGGCCCTTAAAAACAGCTATAG 58.803 43.478 0.00 0.00 0.00 1.31
4656 6468 3.003378 CGGCCCTTAAAAACAGCTATAGC 59.997 47.826 17.33 17.33 42.49 2.97
4672 6484 6.662414 GCTATAGCGGCAAATTATACATGA 57.338 37.500 9.40 0.00 0.00 3.07
4673 6485 7.072177 GCTATAGCGGCAAATTATACATGAA 57.928 36.000 9.40 0.00 0.00 2.57
4674 6486 7.526608 GCTATAGCGGCAAATTATACATGAAA 58.473 34.615 9.40 0.00 0.00 2.69
4675 6487 8.184192 GCTATAGCGGCAAATTATACATGAAAT 58.816 33.333 9.40 0.00 0.00 2.17
4676 6488 9.708222 CTATAGCGGCAAATTATACATGAAATC 57.292 33.333 0.00 0.00 0.00 2.17
4677 6489 5.451908 AGCGGCAAATTATACATGAAATCG 58.548 37.500 0.00 0.00 0.00 3.34
4678 6490 5.008613 AGCGGCAAATTATACATGAAATCGT 59.991 36.000 0.00 0.00 0.00 3.73
4679 6491 5.685511 GCGGCAAATTATACATGAAATCGTT 59.314 36.000 0.00 0.00 0.00 3.85
4680 6492 6.198216 GCGGCAAATTATACATGAAATCGTTT 59.802 34.615 0.00 0.00 0.00 3.60
4681 6493 7.377397 GCGGCAAATTATACATGAAATCGTTTA 59.623 33.333 0.00 0.00 0.00 2.01
4682 6494 8.891928 CGGCAAATTATACATGAAATCGTTTAG 58.108 33.333 0.00 0.00 0.00 1.85
4683 6495 8.690840 GGCAAATTATACATGAAATCGTTTAGC 58.309 33.333 0.00 4.93 0.00 3.09
4684 6496 8.409690 GCAAATTATACATGAAATCGTTTAGCG 58.590 33.333 0.00 0.00 43.01 4.26
4685 6497 8.891928 CAAATTATACATGAAATCGTTTAGCGG 58.108 33.333 0.00 0.00 41.72 5.52
4686 6498 2.825086 ACATGAAATCGTTTAGCGGC 57.175 45.000 0.00 0.00 41.72 6.53
4687 6499 2.080693 ACATGAAATCGTTTAGCGGCA 58.919 42.857 0.00 0.00 41.72 5.69
4688 6500 2.486203 ACATGAAATCGTTTAGCGGCAA 59.514 40.909 0.00 0.00 41.72 4.52
4689 6501 2.604969 TGAAATCGTTTAGCGGCAAC 57.395 45.000 1.45 0.00 41.72 4.17
4690 6502 1.874231 TGAAATCGTTTAGCGGCAACA 59.126 42.857 1.45 0.00 41.72 3.33
4691 6503 2.486203 TGAAATCGTTTAGCGGCAACAT 59.514 40.909 1.45 0.00 41.72 2.71
4692 6504 2.542766 AATCGTTTAGCGGCAACATG 57.457 45.000 1.45 0.00 41.72 3.21
4693 6505 0.098728 ATCGTTTAGCGGCAACATGC 59.901 50.000 1.45 0.00 44.08 4.06
4694 6506 0.953471 TCGTTTAGCGGCAACATGCT 60.953 50.000 1.45 0.00 44.28 3.79
4695 6507 0.521242 CGTTTAGCGGCAACATGCTC 60.521 55.000 1.45 0.00 44.28 4.26
4696 6508 0.521291 GTTTAGCGGCAACATGCTCA 59.479 50.000 1.45 0.00 44.28 4.26
4697 6509 1.068610 GTTTAGCGGCAACATGCTCAA 60.069 47.619 1.45 0.00 44.28 3.02
4698 6510 1.242989 TTAGCGGCAACATGCTCAAA 58.757 45.000 1.45 0.00 44.28 2.69
4699 6511 0.521291 TAGCGGCAACATGCTCAAAC 59.479 50.000 1.45 0.00 44.28 2.93
4700 6512 1.007502 GCGGCAACATGCTCAAACA 60.008 52.632 2.00 0.00 44.28 2.83
4701 6513 1.005294 GCGGCAACATGCTCAAACAG 61.005 55.000 2.00 0.00 44.28 3.16
4702 6514 0.311790 CGGCAACATGCTCAAACAGT 59.688 50.000 2.00 0.00 44.28 3.55
4703 6515 1.269206 CGGCAACATGCTCAAACAGTT 60.269 47.619 2.00 0.00 44.28 3.16
4704 6516 2.031245 CGGCAACATGCTCAAACAGTTA 60.031 45.455 2.00 0.00 44.28 2.24
4705 6517 3.366273 CGGCAACATGCTCAAACAGTTAT 60.366 43.478 2.00 0.00 44.28 1.89
4706 6518 4.142708 CGGCAACATGCTCAAACAGTTATA 60.143 41.667 2.00 0.00 44.28 0.98
4707 6519 5.335127 GGCAACATGCTCAAACAGTTATAG 58.665 41.667 2.00 0.00 44.28 1.31
4708 6520 4.795278 GCAACATGCTCAAACAGTTATAGC 59.205 41.667 11.30 11.30 40.96 2.97
4709 6521 4.864916 ACATGCTCAAACAGTTATAGCG 57.135 40.909 12.75 4.94 35.95 4.26
4710 6522 3.623060 ACATGCTCAAACAGTTATAGCGG 59.377 43.478 12.75 10.51 35.95 5.52
4711 6523 2.627945 TGCTCAAACAGTTATAGCGGG 58.372 47.619 12.75 0.00 35.95 6.13
4712 6524 1.940613 GCTCAAACAGTTATAGCGGGG 59.059 52.381 4.49 0.00 0.00 5.73
4713 6525 1.940613 CTCAAACAGTTATAGCGGGGC 59.059 52.381 0.00 0.00 0.00 5.80
4714 6526 1.557832 TCAAACAGTTATAGCGGGGCT 59.442 47.619 0.00 0.00 43.41 5.19
4715 6527 2.767394 TCAAACAGTTATAGCGGGGCTA 59.233 45.455 0.00 0.00 45.55 3.93
4722 6534 4.551148 TAGCGGGGCTATGGCATA 57.449 55.556 7.06 7.06 40.44 3.14
4723 6535 3.006061 TAGCGGGGCTATGGCATAT 57.994 52.632 7.81 0.00 40.44 1.78
4724 6536 2.168458 TAGCGGGGCTATGGCATATA 57.832 50.000 7.81 0.00 40.44 0.86
4725 6537 0.833287 AGCGGGGCTATGGCATATAG 59.167 55.000 7.81 0.00 36.99 1.31
4726 6538 0.815615 GCGGGGCTATGGCATATAGC 60.816 60.000 18.72 18.72 44.56 2.97
4727 6539 0.530650 CGGGGCTATGGCATATAGCG 60.531 60.000 19.65 2.22 45.83 4.26
4728 6540 0.179045 GGGGCTATGGCATATAGCGG 60.179 60.000 19.65 1.88 45.83 5.52
4729 6541 0.815615 GGGCTATGGCATATAGCGGC 60.816 60.000 19.65 11.56 45.83 6.53
4730 6542 1.154205 GGCTATGGCATATAGCGGCG 61.154 60.000 19.65 0.51 45.83 6.46
4735 6547 4.394712 GCATATAGCGGCGGCCCT 62.395 66.667 14.55 13.86 41.24 5.19
4736 6548 2.347490 CATATAGCGGCGGCCCTT 59.653 61.111 14.55 4.16 41.24 3.95
4737 6549 1.594833 CATATAGCGGCGGCCCTTA 59.405 57.895 14.55 6.51 41.24 2.69
4738 6550 0.036765 CATATAGCGGCGGCCCTTAA 60.037 55.000 14.55 4.03 41.24 1.85
4739 6551 0.688487 ATATAGCGGCGGCCCTTAAA 59.312 50.000 14.55 0.00 41.24 1.52
4740 6552 0.469070 TATAGCGGCGGCCCTTAAAA 59.531 50.000 14.55 0.00 41.24 1.52
4741 6553 0.394625 ATAGCGGCGGCCCTTAAAAA 60.395 50.000 14.55 0.00 41.24 1.94
4742 6554 1.307355 TAGCGGCGGCCCTTAAAAAC 61.307 55.000 14.55 0.00 41.24 2.43
4743 6555 2.921797 GCGGCGGCCCTTAAAAACA 61.922 57.895 14.55 0.00 0.00 2.83
4744 6556 1.211709 CGGCGGCCCTTAAAAACAG 59.788 57.895 14.55 0.00 0.00 3.16
4745 6557 1.080093 GGCGGCCCTTAAAAACAGC 60.080 57.895 8.12 0.00 0.00 4.40
4746 6558 1.532604 GGCGGCCCTTAAAAACAGCT 61.533 55.000 8.12 0.00 0.00 4.24
4747 6559 1.170442 GCGGCCCTTAAAAACAGCTA 58.830 50.000 0.00 0.00 0.00 3.32
4748 6560 1.749063 GCGGCCCTTAAAAACAGCTAT 59.251 47.619 0.00 0.00 0.00 2.97
4749 6561 2.946990 GCGGCCCTTAAAAACAGCTATA 59.053 45.455 0.00 0.00 0.00 1.31
4750 6562 3.003378 GCGGCCCTTAAAAACAGCTATAG 59.997 47.826 0.00 0.00 0.00 1.31
4751 6563 3.003378 CGGCCCTTAAAAACAGCTATAGC 59.997 47.826 17.33 17.33 42.49 2.97
4767 6579 6.662414 GCTATAGCGGCAAATTATACATGA 57.338 37.500 9.40 0.00 0.00 3.07
4768 6580 7.072177 GCTATAGCGGCAAATTATACATGAA 57.928 36.000 9.40 0.00 0.00 2.57
4769 6581 7.526608 GCTATAGCGGCAAATTATACATGAAA 58.473 34.615 9.40 0.00 0.00 2.69
4770 6582 8.184192 GCTATAGCGGCAAATTATACATGAAAT 58.816 33.333 9.40 0.00 0.00 2.17
4771 6583 9.708222 CTATAGCGGCAAATTATACATGAAATC 57.292 33.333 0.00 0.00 0.00 2.17
4772 6584 6.389830 AGCGGCAAATTATACATGAAATCA 57.610 33.333 0.00 0.00 0.00 2.57
4773 6585 6.985117 AGCGGCAAATTATACATGAAATCAT 58.015 32.000 0.00 0.00 36.96 2.45
4774 6586 7.436118 AGCGGCAAATTATACATGAAATCATT 58.564 30.769 0.00 0.00 33.61 2.57
4775 6587 7.927629 AGCGGCAAATTATACATGAAATCATTT 59.072 29.630 0.00 0.00 33.61 2.32
4776 6588 9.190858 GCGGCAAATTATACATGAAATCATTTA 57.809 29.630 0.00 0.00 33.61 1.40
4781 6593 8.970691 AATTATACATGAAATCATTTAGCGGC 57.029 30.769 0.00 0.00 33.61 6.53
4782 6594 7.503521 TTATACATGAAATCATTTAGCGGCA 57.496 32.000 0.00 0.00 33.61 5.69
4783 6595 4.717233 ACATGAAATCATTTAGCGGCAA 57.283 36.364 0.00 0.00 33.61 4.52
4784 6596 4.423732 ACATGAAATCATTTAGCGGCAAC 58.576 39.130 0.00 0.00 33.61 4.17
4785 6597 4.082300 ACATGAAATCATTTAGCGGCAACA 60.082 37.500 0.00 0.00 33.61 3.33
4786 6598 4.717233 TGAAATCATTTAGCGGCAACAT 57.283 36.364 1.45 0.00 0.00 2.71
4787 6599 4.422840 TGAAATCATTTAGCGGCAACATG 58.577 39.130 1.45 0.75 0.00 3.21
4788 6600 2.497107 ATCATTTAGCGGCAACATGC 57.503 45.000 1.45 0.00 44.08 4.06
4789 6601 1.462616 TCATTTAGCGGCAACATGCT 58.537 45.000 1.45 0.00 44.28 3.79
4790 6602 1.401552 TCATTTAGCGGCAACATGCTC 59.598 47.619 1.45 0.00 44.28 4.26
4791 6603 1.132834 CATTTAGCGGCAACATGCTCA 59.867 47.619 1.45 0.00 44.28 4.26
4792 6604 1.242989 TTTAGCGGCAACATGCTCAA 58.757 45.000 1.45 0.00 44.28 3.02
4793 6605 1.242989 TTAGCGGCAACATGCTCAAA 58.757 45.000 1.45 0.00 44.28 2.69
4794 6606 0.521291 TAGCGGCAACATGCTCAAAC 59.479 50.000 1.45 0.00 44.28 2.93
4795 6607 1.007502 GCGGCAACATGCTCAAACA 60.008 52.632 2.00 0.00 44.28 2.83
4796 6608 1.005294 GCGGCAACATGCTCAAACAG 61.005 55.000 2.00 0.00 44.28 3.16
4797 6609 0.311790 CGGCAACATGCTCAAACAGT 59.688 50.000 2.00 0.00 44.28 3.55
4798 6610 1.269206 CGGCAACATGCTCAAACAGTT 60.269 47.619 2.00 0.00 44.28 3.16
4799 6611 2.031245 CGGCAACATGCTCAAACAGTTA 60.031 45.455 2.00 0.00 44.28 2.24
4800 6612 3.366273 CGGCAACATGCTCAAACAGTTAT 60.366 43.478 2.00 0.00 44.28 1.89
4801 6613 4.142708 CGGCAACATGCTCAAACAGTTATA 60.143 41.667 2.00 0.00 44.28 0.98
4802 6614 5.335127 GGCAACATGCTCAAACAGTTATAG 58.665 41.667 2.00 0.00 44.28 1.31
4803 6615 4.795278 GCAACATGCTCAAACAGTTATAGC 59.205 41.667 11.30 11.30 40.96 2.97
4804 6616 4.864916 ACATGCTCAAACAGTTATAGCG 57.135 40.909 12.75 4.94 35.95 4.26
4805 6617 3.623060 ACATGCTCAAACAGTTATAGCGG 59.377 43.478 12.75 10.51 35.95 5.52
4806 6618 2.627945 TGCTCAAACAGTTATAGCGGG 58.372 47.619 12.75 0.00 35.95 6.13
4807 6619 2.235155 TGCTCAAACAGTTATAGCGGGA 59.765 45.455 12.75 0.00 35.95 5.14
4808 6620 2.608090 GCTCAAACAGTTATAGCGGGAC 59.392 50.000 4.49 0.00 0.00 4.46
4809 6621 3.679083 GCTCAAACAGTTATAGCGGGACT 60.679 47.826 4.49 0.00 0.00 3.85
4810 6622 4.441079 GCTCAAACAGTTATAGCGGGACTA 60.441 45.833 4.49 0.00 34.64 2.59
4811 6623 5.739358 GCTCAAACAGTTATAGCGGGACTAT 60.739 44.000 4.49 0.00 44.12 2.12
4812 6624 5.597806 TCAAACAGTTATAGCGGGACTATG 58.402 41.667 0.00 0.00 41.83 2.23
4813 6625 4.602340 AACAGTTATAGCGGGACTATGG 57.398 45.455 0.00 0.00 41.83 2.74
4814 6626 2.299297 ACAGTTATAGCGGGACTATGGC 59.701 50.000 0.00 0.00 41.83 4.40
4815 6627 1.900486 AGTTATAGCGGGACTATGGCC 59.100 52.381 0.00 0.00 41.83 5.36
4816 6628 0.892755 TTATAGCGGGACTATGGCCG 59.107 55.000 0.00 0.00 41.83 6.13
4817 6629 0.968901 TATAGCGGGACTATGGCCGG 60.969 60.000 0.00 0.00 41.83 6.13
4820 6632 2.915659 CGGGACTATGGCCGGCTA 60.916 66.667 28.56 23.38 0.00 3.93
4821 6633 2.283529 CGGGACTATGGCCGGCTAT 61.284 63.158 29.19 29.19 0.00 2.97
4822 6634 1.827399 CGGGACTATGGCCGGCTATT 61.827 60.000 31.32 14.25 0.00 1.73
4823 6635 0.400594 GGGACTATGGCCGGCTATTT 59.599 55.000 31.32 18.08 0.00 1.40
4824 6636 1.626825 GGGACTATGGCCGGCTATTTA 59.373 52.381 31.32 13.04 0.00 1.40
4825 6637 2.039348 GGGACTATGGCCGGCTATTTAA 59.961 50.000 31.32 12.24 0.00 1.52
4826 6638 3.497227 GGGACTATGGCCGGCTATTTAAA 60.497 47.826 31.32 11.84 0.00 1.52
4827 6639 4.139038 GGACTATGGCCGGCTATTTAAAA 58.861 43.478 31.32 11.44 0.00 1.52
4828 6640 4.023450 GGACTATGGCCGGCTATTTAAAAC 60.023 45.833 31.32 15.18 0.00 2.43
4829 6641 4.788679 ACTATGGCCGGCTATTTAAAACT 58.211 39.130 31.32 7.10 0.00 2.66
4830 6642 5.932455 ACTATGGCCGGCTATTTAAAACTA 58.068 37.500 31.32 9.07 0.00 2.24
4831 6643 6.540083 ACTATGGCCGGCTATTTAAAACTAT 58.460 36.000 31.32 5.45 0.00 2.12
4832 6644 5.705609 ATGGCCGGCTATTTAAAACTATG 57.294 39.130 28.56 0.00 0.00 2.23
4833 6645 4.783055 TGGCCGGCTATTTAAAACTATGA 58.217 39.130 28.56 0.00 0.00 2.15
4834 6646 4.819630 TGGCCGGCTATTTAAAACTATGAG 59.180 41.667 28.56 0.00 0.00 2.90
4835 6647 5.061179 GGCCGGCTATTTAAAACTATGAGA 58.939 41.667 28.56 0.00 0.00 3.27
4836 6648 5.529800 GGCCGGCTATTTAAAACTATGAGAA 59.470 40.000 28.56 0.00 0.00 2.87
4837 6649 6.038936 GGCCGGCTATTTAAAACTATGAGAAA 59.961 38.462 28.56 0.00 0.00 2.52
4838 6650 7.255486 GGCCGGCTATTTAAAACTATGAGAAAT 60.255 37.037 28.56 0.00 0.00 2.17
4839 6651 8.780249 GCCGGCTATTTAAAACTATGAGAAATA 58.220 33.333 22.15 0.00 0.00 1.40
4971 6784 7.429633 CCAAAATTACAGTGTAACACCAATGA 58.570 34.615 17.79 0.00 41.43 2.57
4974 6787 5.994887 TTACAGTGTAACACCAATGACAC 57.005 39.130 11.75 0.00 41.43 3.67
5057 6870 4.305769 CAGCTAGCTGCCTAAGTAATGAG 58.694 47.826 30.62 3.12 44.23 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.887748 ACACCAGTATGTGAGAACTTGAG 58.112 43.478 0.00 0.00 39.57 3.02
45 46 3.685214 ATGTCGTGTCTCGCCTCGC 62.685 63.158 0.00 0.00 39.67 5.03
46 47 1.869574 CATGTCGTGTCTCGCCTCG 60.870 63.158 0.00 0.00 39.67 4.63
47 48 0.798771 GTCATGTCGTGTCTCGCCTC 60.799 60.000 0.00 0.00 39.67 4.70
48 49 1.213013 GTCATGTCGTGTCTCGCCT 59.787 57.895 0.00 0.00 39.67 5.52
49 50 0.798771 GAGTCATGTCGTGTCTCGCC 60.799 60.000 3.95 0.00 39.67 5.54
50 51 0.798771 GGAGTCATGTCGTGTCTCGC 60.799 60.000 11.58 3.72 41.90 5.03
51 52 0.805614 AGGAGTCATGTCGTGTCTCG 59.194 55.000 11.58 0.00 41.90 4.04
52 53 1.202087 CGAGGAGTCATGTCGTGTCTC 60.202 57.143 9.95 9.95 40.76 3.36
53 54 0.805614 CGAGGAGTCATGTCGTGTCT 59.194 55.000 0.00 0.00 0.00 3.41
54 55 0.803117 TCGAGGAGTCATGTCGTGTC 59.197 55.000 8.19 0.00 35.22 3.67
55 56 1.244816 TTCGAGGAGTCATGTCGTGT 58.755 50.000 8.19 0.00 35.22 4.49
56 57 1.986378 GTTTCGAGGAGTCATGTCGTG 59.014 52.381 8.19 0.00 35.22 4.35
72 73 4.798907 TGCTCGACTAATCTCGAATGTTTC 59.201 41.667 0.00 0.00 42.00 2.78
74 75 4.371855 TGCTCGACTAATCTCGAATGTT 57.628 40.909 0.00 0.00 42.00 2.71
80 81 3.695816 TGAACATGCTCGACTAATCTCG 58.304 45.455 0.00 0.00 34.83 4.04
93 94 6.697019 ACACAAAAGACTAAACATGAACATGC 59.303 34.615 13.71 0.00 42.39 4.06
95 96 8.076178 GCTACACAAAAGACTAAACATGAACAT 58.924 33.333 0.00 0.00 0.00 2.71
99 100 8.364894 TCTAGCTACACAAAAGACTAAACATGA 58.635 33.333 0.00 0.00 0.00 3.07
139 144 7.643579 AGCTAAAGTCACATGAAGTTTCTTTC 58.356 34.615 0.00 0.00 34.56 2.62
143 148 7.196331 ACAAAGCTAAAGTCACATGAAGTTTC 58.804 34.615 0.00 0.00 0.00 2.78
228 414 2.793933 CGCGGGTGAGCTAGTAACTTAC 60.794 54.545 0.00 0.00 34.40 2.34
247 433 8.867248 TTATTGTTTGTTTGTTTCTTTTTCGC 57.133 26.923 0.00 0.00 0.00 4.70
283 474 4.142271 TGTTCTTTGCCAACGATTCAAACT 60.142 37.500 0.00 0.00 0.00 2.66
287 478 2.948979 ACTGTTCTTTGCCAACGATTCA 59.051 40.909 0.00 0.00 0.00 2.57
305 496 1.978580 ACCCTCCACCTTTGAGTACTG 59.021 52.381 0.00 0.00 0.00 2.74
307 498 3.307269 GGTAACCCTCCACCTTTGAGTAC 60.307 52.174 0.00 0.00 0.00 2.73
308 499 2.908351 GGTAACCCTCCACCTTTGAGTA 59.092 50.000 0.00 0.00 0.00 2.59
368 559 2.430332 CCTTTGTGCCTTGTCTTTTCCA 59.570 45.455 0.00 0.00 0.00 3.53
370 561 3.801114 ACCTTTGTGCCTTGTCTTTTC 57.199 42.857 0.00 0.00 0.00 2.29
379 570 3.361786 ACAAGTGTTTACCTTTGTGCCT 58.638 40.909 0.00 0.00 32.90 4.75
392 583 3.249080 GTGTTGGTGCGTATACAAGTGTT 59.751 43.478 3.32 0.00 0.00 3.32
405 596 2.597510 GAGGGTGGGTGTTGGTGC 60.598 66.667 0.00 0.00 0.00 5.01
415 606 2.747855 GAAGGCTTGCGAGGGTGG 60.748 66.667 3.46 0.00 0.00 4.61
459 650 3.258872 AGCATTTGTGTGTATGCCATGTT 59.741 39.130 0.00 0.00 46.42 2.71
461 652 3.119424 TGAGCATTTGTGTGTATGCCATG 60.119 43.478 0.00 0.00 46.42 3.66
464 655 3.788333 ATGAGCATTTGTGTGTATGCC 57.212 42.857 0.00 0.00 46.42 4.40
465 656 5.233957 TGTATGAGCATTTGTGTGTATGC 57.766 39.130 0.00 0.00 45.77 3.14
466 657 7.065283 CGTATGTATGAGCATTTGTGTGTATG 58.935 38.462 0.00 0.00 0.00 2.39
468 659 5.006261 GCGTATGTATGAGCATTTGTGTGTA 59.994 40.000 0.00 0.00 0.00 2.90
469 660 4.201812 GCGTATGTATGAGCATTTGTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
470 661 4.201802 TGCGTATGTATGAGCATTTGTGTG 60.202 41.667 0.00 0.00 34.39 3.82
471 662 3.938334 TGCGTATGTATGAGCATTTGTGT 59.062 39.130 0.00 0.00 34.39 3.72
472 663 4.201802 TGTGCGTATGTATGAGCATTTGTG 60.202 41.667 0.00 0.00 41.88 3.33
473 664 3.938334 TGTGCGTATGTATGAGCATTTGT 59.062 39.130 0.00 0.00 41.88 2.83
474 665 4.534794 TGTGCGTATGTATGAGCATTTG 57.465 40.909 0.00 0.00 41.88 2.32
475 666 5.756195 ATTGTGCGTATGTATGAGCATTT 57.244 34.783 0.00 0.00 41.88 2.32
477 668 8.722480 AATATATTGTGCGTATGTATGAGCAT 57.278 30.769 0.00 0.00 41.88 3.79
478 669 7.816995 TGAATATATTGTGCGTATGTATGAGCA 59.183 33.333 1.78 0.00 37.26 4.26
479 670 8.110612 GTGAATATATTGTGCGTATGTATGAGC 58.889 37.037 1.78 0.00 0.00 4.26
480 671 9.358872 AGTGAATATATTGTGCGTATGTATGAG 57.641 33.333 1.78 0.00 0.00 2.90
481 672 9.705290 AAGTGAATATATTGTGCGTATGTATGA 57.295 29.630 1.78 0.00 0.00 2.15
499 690 7.383843 TCTTGCGCGAATTCATATAAGTGAATA 59.616 33.333 12.10 0.00 45.49 1.75
507 698 5.107104 GGATGTTCTTGCGCGAATTCATATA 60.107 40.000 12.10 0.00 0.00 0.86
516 707 2.390599 GCAGGATGTTCTTGCGCGA 61.391 57.895 12.10 0.00 39.64 5.87
529 720 4.907269 TCAGATGTATTCATAAGGGCAGGA 59.093 41.667 0.00 0.00 34.06 3.86
533 724 6.352016 TCTCTCAGATGTATTCATAAGGGC 57.648 41.667 0.00 0.00 34.06 5.19
537 728 9.935241 GGCTTAATCTCTCAGATGTATTCATAA 57.065 33.333 0.00 0.00 34.65 1.90
544 735 3.005897 GCCGGCTTAATCTCTCAGATGTA 59.994 47.826 22.15 0.00 34.65 2.29
547 738 2.042464 TGCCGGCTTAATCTCTCAGAT 58.958 47.619 29.70 0.00 36.28 2.90
549 740 1.134699 TGTGCCGGCTTAATCTCTCAG 60.135 52.381 29.70 0.00 0.00 3.35
550 741 0.901827 TGTGCCGGCTTAATCTCTCA 59.098 50.000 29.70 9.48 0.00 3.27
557 748 2.418368 AAGATGATGTGCCGGCTTAA 57.582 45.000 29.70 13.61 0.00 1.85
577 768 6.347696 TGTTTTTGGCAACTTCATCAATCTT 58.652 32.000 0.00 0.00 37.61 2.40
598 789 6.473778 CGTTCTCATTCGACTATGAAGATGTT 59.526 38.462 1.68 0.00 34.32 2.71
601 792 6.038825 AGACGTTCTCATTCGACTATGAAGAT 59.961 38.462 1.68 0.00 34.32 2.40
606 797 4.035792 AGGAGACGTTCTCATTCGACTATG 59.964 45.833 14.26 0.00 45.12 2.23
607 798 4.200874 AGGAGACGTTCTCATTCGACTAT 58.799 43.478 14.26 0.00 45.12 2.12
608 799 3.607741 AGGAGACGTTCTCATTCGACTA 58.392 45.455 14.26 0.00 45.12 2.59
615 806 2.232452 CAGTGGAAGGAGACGTTCTCAT 59.768 50.000 14.26 6.80 45.12 2.90
616 807 1.613925 CAGTGGAAGGAGACGTTCTCA 59.386 52.381 14.26 0.00 45.12 3.27
618 809 1.996798 TCAGTGGAAGGAGACGTTCT 58.003 50.000 0.00 0.00 0.00 3.01
622 813 1.009389 GCGTTCAGTGGAAGGAGACG 61.009 60.000 1.72 0.00 40.47 4.18
623 814 0.033504 TGCGTTCAGTGGAAGGAGAC 59.966 55.000 1.72 0.00 40.47 3.36
626 817 0.531974 GTGTGCGTTCAGTGGAAGGA 60.532 55.000 1.72 0.00 40.47 3.36
627 818 1.507141 GGTGTGCGTTCAGTGGAAGG 61.507 60.000 0.00 0.00 40.86 3.46
629 820 0.393132 TTGGTGTGCGTTCAGTGGAA 60.393 50.000 0.00 0.00 0.00 3.53
630 821 1.092921 GTTGGTGTGCGTTCAGTGGA 61.093 55.000 0.00 0.00 0.00 4.02
636 827 1.462791 CTTTTCGTTGGTGTGCGTTC 58.537 50.000 0.00 0.00 0.00 3.95
645 836 6.644592 TGAATTTATTTCAGGCTTTTCGTTGG 59.355 34.615 0.00 0.00 39.44 3.77
648 839 7.657336 TCTTGAATTTATTTCAGGCTTTTCGT 58.343 30.769 0.00 0.00 44.90 3.85
688 879 6.525121 TGATTCAAGTCGTAAAGTTGACAG 57.475 37.500 0.00 0.00 45.02 3.51
700 891 2.016961 CCCGCCATGATTCAAGTCG 58.983 57.895 0.00 0.00 0.00 4.18
715 906 2.311688 GACAGTGGTATCCCAGCCCG 62.312 65.000 0.00 0.00 42.94 6.13
721 912 2.062971 TACGAGGACAGTGGTATCCC 57.937 55.000 0.00 0.00 35.38 3.85
722 913 2.100418 GGTTACGAGGACAGTGGTATCC 59.900 54.545 0.00 0.00 34.98 2.59
723 914 2.223433 CGGTTACGAGGACAGTGGTATC 60.223 54.545 0.00 0.00 44.60 2.24
724 915 1.747355 CGGTTACGAGGACAGTGGTAT 59.253 52.381 0.00 0.00 44.60 2.73
725 916 1.167851 CGGTTACGAGGACAGTGGTA 58.832 55.000 0.00 0.00 44.60 3.25
727 918 1.135575 GTACGGTTACGAGGACAGTGG 60.136 57.143 0.00 0.00 44.60 4.00
728 919 1.536766 TGTACGGTTACGAGGACAGTG 59.463 52.381 0.00 0.00 44.60 3.66
729 920 1.896220 TGTACGGTTACGAGGACAGT 58.104 50.000 0.00 0.00 44.60 3.55
730 921 2.227388 AGTTGTACGGTTACGAGGACAG 59.773 50.000 0.00 0.00 44.60 3.51
731 922 2.030893 CAGTTGTACGGTTACGAGGACA 60.031 50.000 0.00 0.00 44.60 4.02
732 923 2.589014 CAGTTGTACGGTTACGAGGAC 58.411 52.381 0.00 0.00 44.60 3.85
733 924 1.541147 CCAGTTGTACGGTTACGAGGA 59.459 52.381 0.00 0.00 44.60 3.71
734 925 1.270550 ACCAGTTGTACGGTTACGAGG 59.729 52.381 0.00 0.00 44.60 4.63
735 926 2.589014 GACCAGTTGTACGGTTACGAG 58.411 52.381 0.00 0.00 44.60 4.18
736 927 1.269448 GGACCAGTTGTACGGTTACGA 59.731 52.381 0.00 0.00 44.60 3.43
744 1285 1.617357 AGAAGGACGGACCAGTTGTAC 59.383 52.381 0.00 0.00 42.04 2.90
746 1287 0.393077 CAGAAGGACGGACCAGTTGT 59.607 55.000 0.00 0.00 42.04 3.32
751 1292 2.600790 TCTAAACAGAAGGACGGACCA 58.399 47.619 0.00 0.00 42.04 4.02
755 1296 4.315803 ACAACATCTAAACAGAAGGACGG 58.684 43.478 0.00 0.00 0.00 4.79
761 1302 7.047891 AGTGAGTTGACAACATCTAAACAGAA 58.952 34.615 20.08 0.00 0.00 3.02
764 1305 8.147704 TCATAGTGAGTTGACAACATCTAAACA 58.852 33.333 20.08 5.94 0.00 2.83
765 1306 8.534333 TCATAGTGAGTTGACAACATCTAAAC 57.466 34.615 20.08 8.53 0.00 2.01
773 1314 3.120649 GGCGTTCATAGTGAGTTGACAAC 60.121 47.826 10.47 10.47 0.00 3.32
777 1318 2.683968 GTGGCGTTCATAGTGAGTTGA 58.316 47.619 0.00 0.00 0.00 3.18
780 1349 0.601558 ACGTGGCGTTCATAGTGAGT 59.398 50.000 0.00 0.00 36.35 3.41
785 1354 0.442310 CAACCACGTGGCGTTCATAG 59.558 55.000 34.26 11.16 38.32 2.23
790 1359 2.314647 CGATCAACCACGTGGCGTT 61.315 57.895 34.26 19.35 38.32 4.84
792 1361 1.752501 GATCGATCAACCACGTGGCG 61.753 60.000 34.26 26.86 39.32 5.69
871 1440 2.797278 GGTCGGCCGATGGATCACT 61.797 63.158 33.58 0.00 0.00 3.41
873 1442 2.762043 TGGTCGGCCGATGGATCA 60.762 61.111 33.58 20.43 37.67 2.92
882 1451 4.851179 GATTCGGGGTGGTCGGCC 62.851 72.222 0.00 0.00 0.00 6.13
944 1513 3.083997 ATGCGGTGGGAGGAGACC 61.084 66.667 0.00 0.00 0.00 3.85
945 1514 2.501610 GATGCGGTGGGAGGAGAC 59.498 66.667 0.00 0.00 0.00 3.36
997 1570 0.103026 GATGGAAAATTGAGGCCGGC 59.897 55.000 21.18 21.18 0.00 6.13
1000 1573 2.100418 GAGCAGATGGAAAATTGAGGCC 59.900 50.000 0.00 0.00 0.00 5.19
1004 1577 2.738743 GGGGAGCAGATGGAAAATTGA 58.261 47.619 0.00 0.00 0.00 2.57
1005 1578 1.406539 CGGGGAGCAGATGGAAAATTG 59.593 52.381 0.00 0.00 0.00 2.32
1006 1579 1.005924 ACGGGGAGCAGATGGAAAATT 59.994 47.619 0.00 0.00 0.00 1.82
1101 1686 4.890306 GGAGGAGGAGGGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
1102 1687 4.179599 GGGAGGAGGAGGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1103 1688 4.179599 GGGGAGGAGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1592 2224 0.698818 ACTTGGAGATTGGGTGGGAC 59.301 55.000 0.00 0.00 0.00 4.46
1615 2247 2.163390 CGCAGACGAGTGATGCCTG 61.163 63.158 0.00 0.00 43.93 4.85
1656 2288 1.914051 CACAGTGCGTAGACTGAATCG 59.086 52.381 15.46 0.00 45.39 3.34
1682 2314 0.175302 CGAGCTGAGCCTGAGTCAAT 59.825 55.000 0.00 0.00 0.00 2.57
1690 2322 2.795110 GCAGATCCGAGCTGAGCCT 61.795 63.158 17.82 0.00 35.39 4.58
1691 2323 2.280052 GCAGATCCGAGCTGAGCC 60.280 66.667 17.82 0.00 35.39 4.70
1721 2353 1.218316 GTAGTGAAGCACCCCGAGG 59.782 63.158 0.00 0.00 34.49 4.63
1722 2354 0.108615 CTGTAGTGAAGCACCCCGAG 60.109 60.000 0.00 0.00 34.49 4.63
1723 2355 1.972198 CTGTAGTGAAGCACCCCGA 59.028 57.895 0.00 0.00 34.49 5.14
1724 2356 1.741770 GCTGTAGTGAAGCACCCCG 60.742 63.158 0.00 0.00 40.52 5.73
1725 2357 1.377333 GGCTGTAGTGAAGCACCCC 60.377 63.158 0.00 0.00 42.69 4.95
1726 2358 1.741770 CGGCTGTAGTGAAGCACCC 60.742 63.158 0.00 0.00 42.69 4.61
1727 2359 0.320421 TTCGGCTGTAGTGAAGCACC 60.320 55.000 0.00 0.00 42.69 5.01
1728 2360 1.394917 CATTCGGCTGTAGTGAAGCAC 59.605 52.381 0.00 0.00 42.69 4.40
1769 2401 1.883926 ACCAACCAGACCGCATTAAAC 59.116 47.619 0.00 0.00 0.00 2.01
1771 2403 1.072489 TCACCAACCAGACCGCATTAA 59.928 47.619 0.00 0.00 0.00 1.40
1802 2438 5.806366 ACAATTTTGTACTACCCGCATAC 57.194 39.130 0.00 0.00 40.16 2.39
1830 2492 5.078411 TCTCTTACAGATGCAGAAAGACC 57.922 43.478 0.00 0.00 0.00 3.85
1835 2497 5.394993 CCAGTGATCTCTTACAGATGCAGAA 60.395 44.000 0.00 0.00 42.48 3.02
1840 2503 3.070734 CCCCCAGTGATCTCTTACAGATG 59.929 52.174 0.00 0.00 42.48 2.90
1844 2507 2.642171 ACCCCCAGTGATCTCTTACA 57.358 50.000 0.00 0.00 0.00 2.41
1845 2508 3.009143 ACAAACCCCCAGTGATCTCTTAC 59.991 47.826 0.00 0.00 0.00 2.34
1847 2510 2.065799 ACAAACCCCCAGTGATCTCTT 58.934 47.619 0.00 0.00 0.00 2.85
1851 2514 1.250840 GGCACAAACCCCCAGTGATC 61.251 60.000 0.00 0.00 35.33 2.92
1896 2562 1.964891 CACCCACAGCAGCAGTCAG 60.965 63.158 0.00 0.00 0.00 3.51
1910 2576 3.073274 AGCACTTCCTGATTTACACCC 57.927 47.619 0.00 0.00 0.00 4.61
1952 2618 7.900782 TTTAGTATCCAGTAAGCACAACTTC 57.099 36.000 0.00 0.00 39.97 3.01
1961 2627 7.873505 GCTATCCCAGTTTTAGTATCCAGTAAG 59.126 40.741 0.00 0.00 0.00 2.34
1983 2649 7.769044 AGAGATTGTGTTAAATACAACCGCTAT 59.231 33.333 8.27 3.19 40.47 2.97
1987 2653 8.286800 TGAAAGAGATTGTGTTAAATACAACCG 58.713 33.333 8.27 0.00 40.47 4.44
2016 2682 4.007659 ACGCCTTACCAACTATCCTTTTG 58.992 43.478 0.00 0.00 0.00 2.44
2017 2683 4.007659 CACGCCTTACCAACTATCCTTTT 58.992 43.478 0.00 0.00 0.00 2.27
2022 2688 3.050619 CGATCACGCCTTACCAACTATC 58.949 50.000 0.00 0.00 0.00 2.08
2054 2720 3.517296 TCCAGTTTTACCCAAGCATGA 57.483 42.857 0.00 0.00 0.00 3.07
2166 2832 3.748568 GGAGCGAAATTCAGTGACTCTTT 59.251 43.478 0.00 0.00 0.00 2.52
2171 2843 2.417719 ACAGGAGCGAAATTCAGTGAC 58.582 47.619 0.00 0.00 0.00 3.67
2200 2872 4.037208 GTCCGGAAGTTCGATCCAACTATA 59.963 45.833 5.23 0.00 35.45 1.31
2326 2998 6.930722 GCATTTCTTTGGATCCTGAAGAAAAA 59.069 34.615 34.55 24.63 46.38 1.94
2337 3009 4.240096 CAGTTGTGGCATTTCTTTGGATC 58.760 43.478 0.00 0.00 0.00 3.36
2414 3086 9.168451 TGTGATAGTCTTTTAAGTTGTTGTCAA 57.832 29.630 0.00 0.00 0.00 3.18
2476 3152 5.309323 GCAAATCTATGCTGTTGGTAACA 57.691 39.130 0.00 0.00 44.38 2.41
2597 3277 3.381908 GGAGACACTTCACGATACTGGAT 59.618 47.826 0.00 0.00 0.00 3.41
2607 3287 3.330267 GAATGGACTGGAGACACTTCAC 58.670 50.000 0.00 0.00 35.60 3.18
2738 3419 1.099879 GCTGCCTTCCTGATTGCGAT 61.100 55.000 0.00 0.00 0.00 4.58
2784 3465 5.982356 TGTCTTGACTCATGAATCCCTTAG 58.018 41.667 1.00 0.00 0.00 2.18
2785 3466 6.373005 TTGTCTTGACTCATGAATCCCTTA 57.627 37.500 1.00 0.00 0.00 2.69
2828 3509 1.942657 GCCTCGCATGTGTCATGTATT 59.057 47.619 6.09 0.00 0.00 1.89
2978 3659 2.502947 AGAGCAGTATGATTGGCAGACA 59.497 45.455 0.00 0.00 41.13 3.41
3127 3809 0.392193 AGGAAGCGCTTCACTCCATG 60.392 55.000 41.60 0.00 41.20 3.66
3289 3971 1.600916 GGCAGCAAAACCTCTCCGT 60.601 57.895 0.00 0.00 0.00 4.69
3390 4072 1.074775 GTGTGGGTTGATGGCTCCA 59.925 57.895 0.00 0.00 0.00 3.86
3405 4087 1.579932 CTCGACGTGGCAGTAGTGT 59.420 57.895 0.00 0.00 0.00 3.55
3652 4334 3.512516 GCTGATGGAAGGCACCGC 61.513 66.667 0.00 0.00 0.00 5.68
3655 4337 1.078848 ACGAGCTGATGGAAGGCAC 60.079 57.895 0.00 0.00 0.00 5.01
3720 4402 2.175878 TCCTGCTGCTGAACTTCTTC 57.824 50.000 8.20 0.00 0.00 2.87
3744 4426 1.455849 CTGGCTGTTCAGGAACCCA 59.544 57.895 9.49 9.22 40.46 4.51
3870 4552 1.070786 GTCGGTCACCCACACATGT 59.929 57.895 0.00 0.00 0.00 3.21
3873 4555 4.595538 GCGTCGGTCACCCACACA 62.596 66.667 0.00 0.00 0.00 3.72
3891 4573 3.729489 TCGTCCTCCTCCGCCTCT 61.729 66.667 0.00 0.00 0.00 3.69
3915 4597 2.122945 TACCCCACCACACCGACA 60.123 61.111 0.00 0.00 0.00 4.35
4041 4729 5.343249 CAAAACAAAGTTCTCAACTCTGGG 58.657 41.667 0.00 0.00 41.91 4.45
4073 4761 0.036952 CCCATTCAGTCTCACACGCT 60.037 55.000 0.00 0.00 0.00 5.07
4103 4791 2.031245 TGAACAACGAATGCACATCCAC 60.031 45.455 0.00 0.00 0.00 4.02
4123 4812 6.365970 AGTCTGCCTTATTATAGGACCATG 57.634 41.667 0.00 0.00 37.50 3.66
4168 4857 4.019950 TGATGATATGAGCGATCAATGGGT 60.020 41.667 7.76 0.00 36.90 4.51
4169 4858 4.510571 TGATGATATGAGCGATCAATGGG 58.489 43.478 7.76 0.00 36.90 4.00
4189 4878 7.307131 TGATCTTCAAGGAGCATACATATGA 57.693 36.000 10.38 0.00 35.75 2.15
4190 4879 7.660617 AGTTGATCTTCAAGGAGCATACATATG 59.339 37.037 0.00 0.00 37.00 1.78
4191 4880 7.660617 CAGTTGATCTTCAAGGAGCATACATAT 59.339 37.037 0.00 0.00 37.00 1.78
4221 4910 3.128242 GCTCATGACTTTGGTTCATGGAG 59.872 47.826 11.41 8.94 40.94 3.86
4224 4913 4.696877 TGTAGCTCATGACTTTGGTTCATG 59.303 41.667 6.06 6.06 41.68 3.07
4230 4927 2.959516 TCGTGTAGCTCATGACTTTGG 58.040 47.619 0.00 0.00 37.18 3.28
4236 4933 3.118992 AGCTTTCATCGTGTAGCTCATGA 60.119 43.478 9.53 9.53 44.76 3.07
4252 4950 1.609208 TGCAGGAGGAAACAGCTTTC 58.391 50.000 0.00 0.00 35.86 2.62
4261 4959 1.788229 TCCATACGATGCAGGAGGAA 58.212 50.000 0.00 0.00 0.00 3.36
4262 4960 1.620323 CATCCATACGATGCAGGAGGA 59.380 52.381 0.00 0.00 41.99 3.71
4263 4961 1.338484 CCATCCATACGATGCAGGAGG 60.338 57.143 0.00 0.00 46.17 4.30
4274 4972 2.957402 TTGGCTCCATCCATCCATAC 57.043 50.000 0.00 0.00 35.77 2.39
4295 4993 0.979665 TGAAGGCTTGCTACTCTGCT 59.020 50.000 3.46 0.00 0.00 4.24
4300 4998 2.508526 CCAAACTGAAGGCTTGCTACT 58.491 47.619 3.46 0.00 0.00 2.57
4302 5000 1.144913 ACCCAAACTGAAGGCTTGCTA 59.855 47.619 3.46 0.00 0.00 3.49
4337 5035 3.434641 GGTTAACTTTCGTCAGGGTTAGC 59.565 47.826 5.42 0.00 0.00 3.09
4395 6205 6.457528 GGCAATTGACGGTTTTGAAATTTTCA 60.458 34.615 10.34 7.74 38.04 2.69
4396 6206 5.906838 GGCAATTGACGGTTTTGAAATTTTC 59.093 36.000 10.34 2.05 0.00 2.29
4400 6211 3.056304 CGGCAATTGACGGTTTTGAAAT 58.944 40.909 26.26 0.00 44.21 2.17
4501 6312 1.774856 GATGGGGTACTGCTTGGGTAT 59.225 52.381 0.00 0.00 0.00 2.73
4502 6313 1.209621 GATGGGGTACTGCTTGGGTA 58.790 55.000 0.00 0.00 0.00 3.69
4537 6349 4.347000 GTGGCTACAGATGGGGTATTTCTA 59.653 45.833 0.00 0.00 0.00 2.10
4577 6389 8.680903 CATTGATATTTCTTCAGGCTGTAGTTT 58.319 33.333 18.91 9.01 0.00 2.66
4599 6411 5.347364 CCATAGCCCGTTGTTTAAAACATTG 59.653 40.000 0.00 0.00 41.79 2.82
4600 6412 5.474825 CCATAGCCCGTTGTTTAAAACATT 58.525 37.500 0.00 0.00 41.79 2.71
4601 6413 4.619628 GCCATAGCCCGTTGTTTAAAACAT 60.620 41.667 0.00 0.00 41.79 2.71
4602 6414 3.305471 GCCATAGCCCGTTGTTTAAAACA 60.305 43.478 0.00 0.00 40.21 2.83
4603 6415 3.247442 GCCATAGCCCGTTGTTTAAAAC 58.753 45.455 0.00 0.00 0.00 2.43
4604 6416 2.891580 TGCCATAGCCCGTTGTTTAAAA 59.108 40.909 0.00 0.00 38.69 1.52
4605 6417 2.515854 TGCCATAGCCCGTTGTTTAAA 58.484 42.857 0.00 0.00 38.69 1.52
4606 6418 2.201921 TGCCATAGCCCGTTGTTTAA 57.798 45.000 0.00 0.00 38.69 1.52
4607 6419 2.428544 ATGCCATAGCCCGTTGTTTA 57.571 45.000 0.00 0.00 38.69 2.01
4608 6420 2.428544 TATGCCATAGCCCGTTGTTT 57.571 45.000 0.00 0.00 38.69 2.83
4609 6421 2.656947 ATATGCCATAGCCCGTTGTT 57.343 45.000 0.00 0.00 38.69 2.83
4610 6422 2.615493 GCTATATGCCATAGCCCGTTGT 60.615 50.000 13.81 0.00 40.69 3.32
4611 6423 2.009774 GCTATATGCCATAGCCCGTTG 58.990 52.381 13.81 0.00 40.69 4.10
4612 6424 1.405526 CGCTATATGCCATAGCCCGTT 60.406 52.381 17.28 0.00 42.89 4.44
4613 6425 0.175760 CGCTATATGCCATAGCCCGT 59.824 55.000 17.28 0.00 42.89 5.28
4614 6426 0.459899 TCGCTATATGCCATAGCCCG 59.540 55.000 17.28 8.21 42.89 6.13
4615 6427 1.802880 CGTCGCTATATGCCATAGCCC 60.803 57.143 17.28 10.04 42.89 5.19
4616 6428 1.560923 CGTCGCTATATGCCATAGCC 58.439 55.000 17.28 7.38 42.89 3.93
4617 6429 1.560923 CCGTCGCTATATGCCATAGC 58.439 55.000 14.48 14.48 42.53 2.97
4618 6430 1.560923 GCCGTCGCTATATGCCATAG 58.439 55.000 0.00 0.00 38.78 2.23
4619 6431 0.174845 GGCCGTCGCTATATGCCATA 59.825 55.000 3.43 0.00 41.76 2.74
4620 6432 1.079127 GGCCGTCGCTATATGCCAT 60.079 57.895 3.43 0.00 41.76 4.40
4621 6433 2.342279 GGCCGTCGCTATATGCCA 59.658 61.111 3.43 0.00 41.76 4.92
4622 6434 2.434359 GGGCCGTCGCTATATGCC 60.434 66.667 0.00 0.00 41.42 4.40
4623 6435 0.245539 TAAGGGCCGTCGCTATATGC 59.754 55.000 0.00 0.00 34.79 3.14
4624 6436 2.736144 TTAAGGGCCGTCGCTATATG 57.264 50.000 0.00 0.00 34.79 1.78
4625 6437 3.756933 TTTTAAGGGCCGTCGCTATAT 57.243 42.857 0.00 0.00 34.79 0.86
4626 6438 3.197265 GTTTTTAAGGGCCGTCGCTATA 58.803 45.455 0.00 0.00 34.79 1.31
4627 6439 2.011947 GTTTTTAAGGGCCGTCGCTAT 58.988 47.619 0.00 0.00 34.79 2.97
4628 6440 1.270732 TGTTTTTAAGGGCCGTCGCTA 60.271 47.619 0.00 0.00 34.79 4.26
4629 6441 0.535553 TGTTTTTAAGGGCCGTCGCT 60.536 50.000 0.00 0.00 37.04 4.93
4630 6442 0.109919 CTGTTTTTAAGGGCCGTCGC 60.110 55.000 0.00 0.00 0.00 5.19
4631 6443 0.109919 GCTGTTTTTAAGGGCCGTCG 60.110 55.000 0.00 0.00 0.00 5.12
4632 6444 1.244816 AGCTGTTTTTAAGGGCCGTC 58.755 50.000 0.00 0.00 0.00 4.79
4633 6445 2.572209 TAGCTGTTTTTAAGGGCCGT 57.428 45.000 0.00 0.00 0.00 5.68
4634 6446 3.003378 GCTATAGCTGTTTTTAAGGGCCG 59.997 47.826 17.75 0.00 38.21 6.13
4635 6447 3.003378 CGCTATAGCTGTTTTTAAGGGCC 59.997 47.826 21.98 0.00 39.32 5.80
4636 6448 3.003378 CCGCTATAGCTGTTTTTAAGGGC 59.997 47.826 21.98 0.00 39.32 5.19
4637 6449 3.003378 GCCGCTATAGCTGTTTTTAAGGG 59.997 47.826 21.98 12.40 39.32 3.95
4638 6450 3.625764 TGCCGCTATAGCTGTTTTTAAGG 59.374 43.478 21.98 13.07 39.32 2.69
4639 6451 4.875544 TGCCGCTATAGCTGTTTTTAAG 57.124 40.909 21.98 3.56 39.32 1.85
4640 6452 5.630661 TTTGCCGCTATAGCTGTTTTTAA 57.369 34.783 21.98 5.47 39.32 1.52
4641 6453 5.828299 ATTTGCCGCTATAGCTGTTTTTA 57.172 34.783 21.98 2.73 39.32 1.52
4642 6454 4.718940 ATTTGCCGCTATAGCTGTTTTT 57.281 36.364 21.98 1.13 39.32 1.94
4643 6455 4.718940 AATTTGCCGCTATAGCTGTTTT 57.281 36.364 21.98 6.03 39.32 2.43
4644 6456 6.485313 TGTATAATTTGCCGCTATAGCTGTTT 59.515 34.615 21.98 10.73 39.32 2.83
4645 6457 5.995282 TGTATAATTTGCCGCTATAGCTGTT 59.005 36.000 21.98 8.69 39.32 3.16
4646 6458 5.547465 TGTATAATTTGCCGCTATAGCTGT 58.453 37.500 21.98 3.08 39.32 4.40
4647 6459 6.313658 TCATGTATAATTTGCCGCTATAGCTG 59.686 38.462 21.98 16.77 39.32 4.24
4648 6460 6.406370 TCATGTATAATTTGCCGCTATAGCT 58.594 36.000 21.98 4.48 39.32 3.32
4649 6461 6.662414 TCATGTATAATTTGCCGCTATAGC 57.338 37.500 15.09 15.09 37.78 2.97
4650 6462 9.708222 GATTTCATGTATAATTTGCCGCTATAG 57.292 33.333 0.00 0.00 0.00 1.31
4651 6463 8.387354 CGATTTCATGTATAATTTGCCGCTATA 58.613 33.333 0.00 0.00 0.00 1.31
4652 6464 7.094805 ACGATTTCATGTATAATTTGCCGCTAT 60.095 33.333 0.00 0.00 0.00 2.97
4653 6465 6.203915 ACGATTTCATGTATAATTTGCCGCTA 59.796 34.615 0.00 0.00 0.00 4.26
4654 6466 5.008613 ACGATTTCATGTATAATTTGCCGCT 59.991 36.000 0.00 0.00 0.00 5.52
4655 6467 5.212194 ACGATTTCATGTATAATTTGCCGC 58.788 37.500 0.00 0.00 0.00 6.53
4656 6468 7.678194 AAACGATTTCATGTATAATTTGCCG 57.322 32.000 0.00 0.00 0.00 5.69
4657 6469 8.690840 GCTAAACGATTTCATGTATAATTTGCC 58.309 33.333 0.00 0.00 0.00 4.52
4671 6483 4.802282 GCATGTTGCCGCTAAACGATTTC 61.802 47.826 0.00 0.00 43.32 2.17
4672 6484 2.984215 GCATGTTGCCGCTAAACGATTT 60.984 45.455 0.00 0.00 43.32 2.17
4673 6485 1.467374 GCATGTTGCCGCTAAACGATT 60.467 47.619 0.00 0.00 43.32 3.34
4674 6486 0.098728 GCATGTTGCCGCTAAACGAT 59.901 50.000 0.00 0.00 43.32 3.73
4675 6487 0.953471 AGCATGTTGCCGCTAAACGA 60.953 50.000 0.00 0.00 46.52 3.85
4676 6488 0.521242 GAGCATGTTGCCGCTAAACG 60.521 55.000 0.00 0.00 46.52 3.60
4677 6489 0.521291 TGAGCATGTTGCCGCTAAAC 59.479 50.000 0.00 0.00 46.52 2.01
4678 6490 1.242989 TTGAGCATGTTGCCGCTAAA 58.757 45.000 0.00 0.00 46.52 1.85
4679 6491 1.068610 GTTTGAGCATGTTGCCGCTAA 60.069 47.619 0.00 0.00 46.52 3.09
4680 6492 0.521291 GTTTGAGCATGTTGCCGCTA 59.479 50.000 0.00 0.00 46.52 4.26
4681 6493 1.286880 GTTTGAGCATGTTGCCGCT 59.713 52.632 0.00 0.00 46.52 5.52
4682 6494 1.005294 CTGTTTGAGCATGTTGCCGC 61.005 55.000 0.00 0.00 46.52 6.53
4683 6495 0.311790 ACTGTTTGAGCATGTTGCCG 59.688 50.000 0.00 0.00 46.52 5.69
4684 6496 2.514205 AACTGTTTGAGCATGTTGCC 57.486 45.000 0.00 0.00 46.52 4.52
4685 6497 4.795278 GCTATAACTGTTTGAGCATGTTGC 59.205 41.667 16.81 0.00 45.46 4.17
4686 6498 5.023920 CGCTATAACTGTTTGAGCATGTTG 58.976 41.667 19.80 5.85 32.55 3.33
4687 6499 4.094887 CCGCTATAACTGTTTGAGCATGTT 59.905 41.667 19.80 0.00 32.55 2.71
4688 6500 3.623060 CCGCTATAACTGTTTGAGCATGT 59.377 43.478 19.80 0.00 32.55 3.21
4689 6501 3.002656 CCCGCTATAACTGTTTGAGCATG 59.997 47.826 19.80 12.81 32.55 4.06
4690 6502 3.206150 CCCGCTATAACTGTTTGAGCAT 58.794 45.455 19.80 3.42 32.55 3.79
4691 6503 2.627945 CCCGCTATAACTGTTTGAGCA 58.372 47.619 19.80 0.00 32.55 4.26
4692 6504 1.940613 CCCCGCTATAACTGTTTGAGC 59.059 52.381 13.43 13.43 0.00 4.26
4693 6505 1.940613 GCCCCGCTATAACTGTTTGAG 59.059 52.381 0.00 0.00 0.00 3.02
4694 6506 1.557832 AGCCCCGCTATAACTGTTTGA 59.442 47.619 0.00 0.00 36.99 2.69
4695 6507 2.038387 AGCCCCGCTATAACTGTTTG 57.962 50.000 0.00 0.00 36.99 2.93
4705 6517 2.039418 CTATATGCCATAGCCCCGCTA 58.961 52.381 0.00 0.00 45.55 4.26
4706 6518 0.833287 CTATATGCCATAGCCCCGCT 59.167 55.000 0.00 0.00 43.41 5.52
4707 6519 0.815615 GCTATATGCCATAGCCCCGC 60.816 60.000 13.81 0.00 40.69 6.13
4708 6520 0.530650 CGCTATATGCCATAGCCCCG 60.531 60.000 17.28 4.82 42.89 5.73
4709 6521 0.179045 CCGCTATATGCCATAGCCCC 60.179 60.000 17.28 0.00 42.89 5.80
4710 6522 0.815615 GCCGCTATATGCCATAGCCC 60.816 60.000 17.28 8.52 42.89 5.19
4711 6523 1.154205 CGCCGCTATATGCCATAGCC 61.154 60.000 17.28 7.38 42.89 3.93
4712 6524 1.154205 CCGCCGCTATATGCCATAGC 61.154 60.000 14.48 14.48 42.53 2.97
4713 6525 1.154205 GCCGCCGCTATATGCCATAG 61.154 60.000 0.00 0.00 38.78 2.23
4714 6526 1.153449 GCCGCCGCTATATGCCATA 60.153 57.895 0.00 0.00 38.78 2.74
4715 6527 2.436646 GCCGCCGCTATATGCCAT 60.437 61.111 0.00 0.00 38.78 4.40
4716 6528 4.697756 GGCCGCCGCTATATGCCA 62.698 66.667 0.00 0.00 41.76 4.92
4718 6530 2.515996 TAAGGGCCGCCGCTATATGC 62.516 60.000 2.55 0.00 33.36 3.14
4719 6531 0.036765 TTAAGGGCCGCCGCTATATG 60.037 55.000 2.55 0.00 33.36 1.78
4720 6532 0.688487 TTTAAGGGCCGCCGCTATAT 59.312 50.000 2.55 0.00 33.36 0.86
4721 6533 0.469070 TTTTAAGGGCCGCCGCTATA 59.531 50.000 2.55 0.00 33.36 1.31
4722 6534 0.394625 TTTTTAAGGGCCGCCGCTAT 60.395 50.000 2.55 0.00 33.36 2.97
4723 6535 1.002379 TTTTTAAGGGCCGCCGCTA 60.002 52.632 2.55 0.00 33.36 4.26
4724 6536 2.282603 TTTTTAAGGGCCGCCGCT 60.283 55.556 2.55 0.00 35.50 5.52
4725 6537 2.126228 GTTTTTAAGGGCCGCCGC 60.126 61.111 2.55 0.00 0.00 6.53
4726 6538 1.211709 CTGTTTTTAAGGGCCGCCG 59.788 57.895 2.55 0.00 0.00 6.46
4727 6539 1.080093 GCTGTTTTTAAGGGCCGCC 60.080 57.895 0.00 0.00 0.00 6.13
4728 6540 1.170442 TAGCTGTTTTTAAGGGCCGC 58.830 50.000 0.00 0.00 0.00 6.53
4729 6541 3.003378 GCTATAGCTGTTTTTAAGGGCCG 59.997 47.826 17.75 0.00 38.21 6.13
4730 6542 3.003378 CGCTATAGCTGTTTTTAAGGGCC 59.997 47.826 21.98 0.00 39.32 5.80
4731 6543 3.003378 CCGCTATAGCTGTTTTTAAGGGC 59.997 47.826 21.98 0.00 39.32 5.19
4732 6544 3.003378 GCCGCTATAGCTGTTTTTAAGGG 59.997 47.826 21.98 12.40 39.32 3.95
4733 6545 3.625764 TGCCGCTATAGCTGTTTTTAAGG 59.374 43.478 21.98 13.07 39.32 2.69
4734 6546 4.875544 TGCCGCTATAGCTGTTTTTAAG 57.124 40.909 21.98 3.56 39.32 1.85
4735 6547 5.630661 TTTGCCGCTATAGCTGTTTTTAA 57.369 34.783 21.98 5.47 39.32 1.52
4736 6548 5.828299 ATTTGCCGCTATAGCTGTTTTTA 57.172 34.783 21.98 2.73 39.32 1.52
4737 6549 4.718940 ATTTGCCGCTATAGCTGTTTTT 57.281 36.364 21.98 1.13 39.32 1.94
4738 6550 4.718940 AATTTGCCGCTATAGCTGTTTT 57.281 36.364 21.98 6.03 39.32 2.43
4739 6551 6.485313 TGTATAATTTGCCGCTATAGCTGTTT 59.515 34.615 21.98 10.73 39.32 2.83
4740 6552 5.995282 TGTATAATTTGCCGCTATAGCTGTT 59.005 36.000 21.98 8.69 39.32 3.16
4741 6553 5.547465 TGTATAATTTGCCGCTATAGCTGT 58.453 37.500 21.98 3.08 39.32 4.40
4742 6554 6.313658 TCATGTATAATTTGCCGCTATAGCTG 59.686 38.462 21.98 16.77 39.32 4.24
4743 6555 6.406370 TCATGTATAATTTGCCGCTATAGCT 58.594 36.000 21.98 4.48 39.32 3.32
4744 6556 6.662414 TCATGTATAATTTGCCGCTATAGC 57.338 37.500 15.09 15.09 37.78 2.97
4745 6557 9.708222 GATTTCATGTATAATTTGCCGCTATAG 57.292 33.333 0.00 0.00 0.00 1.31
4746 6558 9.225436 TGATTTCATGTATAATTTGCCGCTATA 57.775 29.630 0.00 0.00 0.00 1.31
4747 6559 8.109705 TGATTTCATGTATAATTTGCCGCTAT 57.890 30.769 0.00 0.00 0.00 2.97
4748 6560 7.503521 TGATTTCATGTATAATTTGCCGCTA 57.496 32.000 0.00 0.00 0.00 4.26
4749 6561 6.389830 TGATTTCATGTATAATTTGCCGCT 57.610 33.333 0.00 0.00 0.00 5.52
4750 6562 7.642071 AATGATTTCATGTATAATTTGCCGC 57.358 32.000 0.00 0.00 36.56 6.53
4755 6567 9.410556 GCCGCTAAATGATTTCATGTATAATTT 57.589 29.630 0.00 9.41 36.56 1.82
4756 6568 8.575589 TGCCGCTAAATGATTTCATGTATAATT 58.424 29.630 0.00 0.00 36.56 1.40
4757 6569 8.109705 TGCCGCTAAATGATTTCATGTATAAT 57.890 30.769 0.00 0.00 36.56 1.28
4758 6570 7.503521 TGCCGCTAAATGATTTCATGTATAA 57.496 32.000 0.00 0.00 36.56 0.98
4759 6571 7.012799 TGTTGCCGCTAAATGATTTCATGTATA 59.987 33.333 0.00 0.00 36.56 1.47
4760 6572 6.183360 TGTTGCCGCTAAATGATTTCATGTAT 60.183 34.615 0.00 0.00 36.56 2.29
4761 6573 5.124617 TGTTGCCGCTAAATGATTTCATGTA 59.875 36.000 0.00 0.00 36.56 2.29
4762 6574 4.082300 TGTTGCCGCTAAATGATTTCATGT 60.082 37.500 0.00 0.00 36.56 3.21
4763 6575 4.422840 TGTTGCCGCTAAATGATTTCATG 58.577 39.130 0.00 0.00 36.56 3.07
4764 6576 4.717233 TGTTGCCGCTAAATGATTTCAT 57.283 36.364 0.00 0.00 38.41 2.57
4765 6577 4.422840 CATGTTGCCGCTAAATGATTTCA 58.577 39.130 0.00 0.00 0.00 2.69
4766 6578 3.243643 GCATGTTGCCGCTAAATGATTTC 59.756 43.478 8.94 0.00 37.42 2.17
4767 6579 3.119029 AGCATGTTGCCGCTAAATGATTT 60.119 39.130 8.94 0.00 46.52 2.17
4768 6580 2.428171 AGCATGTTGCCGCTAAATGATT 59.572 40.909 8.94 0.00 46.52 2.57
4769 6581 2.026641 AGCATGTTGCCGCTAAATGAT 58.973 42.857 8.94 0.00 46.52 2.45
4770 6582 1.401552 GAGCATGTTGCCGCTAAATGA 59.598 47.619 8.94 0.00 46.52 2.57
4771 6583 1.132834 TGAGCATGTTGCCGCTAAATG 59.867 47.619 0.97 0.97 46.52 2.32
4772 6584 1.462616 TGAGCATGTTGCCGCTAAAT 58.537 45.000 0.00 0.00 46.52 1.40
4773 6585 1.242989 TTGAGCATGTTGCCGCTAAA 58.757 45.000 0.00 0.00 46.52 1.85
4774 6586 1.068610 GTTTGAGCATGTTGCCGCTAA 60.069 47.619 0.00 0.00 46.52 3.09
4775 6587 0.521291 GTTTGAGCATGTTGCCGCTA 59.479 50.000 0.00 0.00 46.52 4.26
4776 6588 1.286880 GTTTGAGCATGTTGCCGCT 59.713 52.632 0.00 0.00 46.52 5.52
4777 6589 1.005294 CTGTTTGAGCATGTTGCCGC 61.005 55.000 0.00 0.00 46.52 6.53
4778 6590 0.311790 ACTGTTTGAGCATGTTGCCG 59.688 50.000 0.00 0.00 46.52 5.69
4779 6591 2.514205 AACTGTTTGAGCATGTTGCC 57.486 45.000 0.00 0.00 46.52 4.52
4780 6592 4.795278 GCTATAACTGTTTGAGCATGTTGC 59.205 41.667 16.81 0.00 45.46 4.17
4781 6593 5.023920 CGCTATAACTGTTTGAGCATGTTG 58.976 41.667 19.80 5.85 32.55 3.33
4782 6594 4.094887 CCGCTATAACTGTTTGAGCATGTT 59.905 41.667 19.80 0.00 32.55 2.71
4783 6595 3.623060 CCGCTATAACTGTTTGAGCATGT 59.377 43.478 19.80 0.00 32.55 3.21
4784 6596 3.002656 CCCGCTATAACTGTTTGAGCATG 59.997 47.826 19.80 12.81 32.55 4.06
4785 6597 3.118408 TCCCGCTATAACTGTTTGAGCAT 60.118 43.478 19.80 3.42 32.55 3.79
4786 6598 2.235155 TCCCGCTATAACTGTTTGAGCA 59.765 45.455 19.80 4.76 32.55 4.26
4787 6599 2.608090 GTCCCGCTATAACTGTTTGAGC 59.392 50.000 13.43 13.43 0.00 4.26
4788 6600 4.124851 AGTCCCGCTATAACTGTTTGAG 57.875 45.455 0.00 0.00 0.00 3.02
4789 6601 5.452776 CCATAGTCCCGCTATAACTGTTTGA 60.453 44.000 0.00 0.00 38.28 2.69
4790 6602 4.750098 CCATAGTCCCGCTATAACTGTTTG 59.250 45.833 0.00 0.00 38.28 2.93
4791 6603 4.742743 GCCATAGTCCCGCTATAACTGTTT 60.743 45.833 0.00 0.00 38.28 2.83
4792 6604 3.244112 GCCATAGTCCCGCTATAACTGTT 60.244 47.826 0.00 0.00 38.28 3.16
4793 6605 2.299297 GCCATAGTCCCGCTATAACTGT 59.701 50.000 0.00 0.00 38.28 3.55
4794 6606 2.353803 GGCCATAGTCCCGCTATAACTG 60.354 54.545 0.00 0.00 38.28 3.16
4795 6607 1.900486 GGCCATAGTCCCGCTATAACT 59.100 52.381 0.00 0.00 38.28 2.24
4796 6608 1.403780 CGGCCATAGTCCCGCTATAAC 60.404 57.143 2.24 0.00 38.28 1.89
4797 6609 0.892755 CGGCCATAGTCCCGCTATAA 59.107 55.000 2.24 0.00 38.28 0.98
4798 6610 0.968901 CCGGCCATAGTCCCGCTATA 60.969 60.000 2.24 0.00 43.05 1.31
4799 6611 2.283529 CCGGCCATAGTCCCGCTAT 61.284 63.158 2.24 0.00 43.05 2.97
4800 6612 2.915659 CCGGCCATAGTCCCGCTA 60.916 66.667 2.24 0.00 43.05 4.26
4803 6615 1.827399 AATAGCCGGCCATAGTCCCG 61.827 60.000 26.15 0.00 43.97 5.14
4804 6616 0.400594 AAATAGCCGGCCATAGTCCC 59.599 55.000 26.15 0.00 0.00 4.46
4805 6617 3.412237 TTAAATAGCCGGCCATAGTCC 57.588 47.619 26.15 0.00 0.00 3.85
4806 6618 4.820173 AGTTTTAAATAGCCGGCCATAGTC 59.180 41.667 26.15 5.87 0.00 2.59
4807 6619 4.788679 AGTTTTAAATAGCCGGCCATAGT 58.211 39.130 26.15 6.28 0.00 2.12
4808 6620 6.653320 TCATAGTTTTAAATAGCCGGCCATAG 59.347 38.462 26.15 0.00 0.00 2.23
4809 6621 6.535540 TCATAGTTTTAAATAGCCGGCCATA 58.464 36.000 26.15 10.92 0.00 2.74
4810 6622 5.381757 TCATAGTTTTAAATAGCCGGCCAT 58.618 37.500 26.15 13.68 0.00 4.40
4811 6623 4.783055 TCATAGTTTTAAATAGCCGGCCA 58.217 39.130 26.15 11.15 0.00 5.36
4812 6624 5.061179 TCTCATAGTTTTAAATAGCCGGCC 58.939 41.667 26.15 5.07 0.00 6.13
4813 6625 6.613755 TTCTCATAGTTTTAAATAGCCGGC 57.386 37.500 21.89 21.89 0.00 6.13
4823 6635 9.665719 TCTGTGTGCATATTTCTCATAGTTTTA 57.334 29.630 0.00 0.00 0.00 1.52
4824 6636 8.565896 TCTGTGTGCATATTTCTCATAGTTTT 57.434 30.769 0.00 0.00 0.00 2.43
4825 6637 7.201679 GCTCTGTGTGCATATTTCTCATAGTTT 60.202 37.037 0.00 0.00 0.00 2.66
4826 6638 6.259608 GCTCTGTGTGCATATTTCTCATAGTT 59.740 38.462 0.00 0.00 0.00 2.24
4827 6639 5.757320 GCTCTGTGTGCATATTTCTCATAGT 59.243 40.000 0.00 0.00 0.00 2.12
4828 6640 5.756833 TGCTCTGTGTGCATATTTCTCATAG 59.243 40.000 0.00 0.00 35.31 2.23
4829 6641 5.525012 GTGCTCTGTGTGCATATTTCTCATA 59.475 40.000 0.00 0.00 42.69 2.15
4830 6642 4.334759 GTGCTCTGTGTGCATATTTCTCAT 59.665 41.667 0.00 0.00 42.69 2.90
4831 6643 3.686241 GTGCTCTGTGTGCATATTTCTCA 59.314 43.478 0.00 0.00 42.69 3.27
4832 6644 3.686241 TGTGCTCTGTGTGCATATTTCTC 59.314 43.478 0.00 0.00 42.69 2.87
4833 6645 3.678289 TGTGCTCTGTGTGCATATTTCT 58.322 40.909 0.00 0.00 42.69 2.52
4834 6646 4.161333 GTTGTGCTCTGTGTGCATATTTC 58.839 43.478 0.00 0.00 42.69 2.17
4835 6647 3.365264 CGTTGTGCTCTGTGTGCATATTT 60.365 43.478 0.00 0.00 42.69 1.40
4836 6648 2.160219 CGTTGTGCTCTGTGTGCATATT 59.840 45.455 0.00 0.00 42.69 1.28
4837 6649 1.733912 CGTTGTGCTCTGTGTGCATAT 59.266 47.619 0.00 0.00 42.69 1.78
4838 6650 1.147473 CGTTGTGCTCTGTGTGCATA 58.853 50.000 0.00 0.00 42.69 3.14
4839 6651 1.944035 CGTTGTGCTCTGTGTGCAT 59.056 52.632 0.00 0.00 42.69 3.96
4840 6652 2.822758 GCGTTGTGCTCTGTGTGCA 61.823 57.895 0.00 0.00 41.73 4.57
4933 6745 9.260002 CACTGTAATTTTGGCTAGAAAATGTTT 57.740 29.630 0.00 0.00 36.01 2.83
4942 6754 6.205853 TGGTGTTACACTGTAATTTTGGCTAG 59.794 38.462 15.44 0.00 34.40 3.42
4971 6784 9.833182 GTTTTGGTTCAAAAATGTTTATTGTGT 57.167 25.926 7.29 0.00 43.50 3.72
5008 6821 1.532868 GATGACAGTGGTGTTGCACTC 59.467 52.381 0.00 0.00 36.88 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.