Multiple sequence alignment - TraesCS3A01G425600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G425600 chr3A 100.000 4574 0 0 1 4574 667947695 667952268 0.000000e+00 8447
1 TraesCS3A01G425600 chr3A 78.095 525 89 22 3047 3562 669525469 669525976 4.440000e-80 309
2 TraesCS3A01G425600 chr3A 76.460 582 107 25 3047 3617 669564382 669564944 5.790000e-74 289
3 TraesCS3A01G425600 chr3A 83.756 197 30 2 3365 3560 669181388 669181583 7.810000e-43 185
4 TraesCS3A01G425600 chr3D 93.910 4138 159 27 1 4096 532773948 532778034 0.000000e+00 6159
5 TraesCS3A01G425600 chr3D 89.818 275 28 0 4093 4367 382105882 382105608 2.020000e-93 353
6 TraesCS3A01G425600 chr3D 78.585 523 92 16 3047 3562 533674580 533675089 1.230000e-85 327
7 TraesCS3A01G425600 chr3D 77.757 526 89 24 3047 3562 533670006 533670513 9.620000e-77 298
8 TraesCS3A01G425600 chr3B 93.761 2212 82 26 1 2181 705002322 705004508 0.000000e+00 3269
9 TraesCS3A01G425600 chr3B 94.862 1557 65 8 2451 3994 705004783 705006337 0.000000e+00 2418
10 TraesCS3A01G425600 chr3B 89.963 269 27 0 4092 4360 327046632 327046364 9.420000e-92 348
11 TraesCS3A01G425600 chr3B 90.947 243 13 2 2219 2453 705004496 705004737 7.380000e-83 318
12 TraesCS3A01G425600 chr3B 87.629 194 24 0 3365 3558 705454638 705454831 4.600000e-55 226
13 TraesCS3A01G425600 chr3B 84.043 188 30 0 3371 3558 705139946 705140133 1.010000e-41 182
14 TraesCS3A01G425600 chr3B 96.429 84 2 1 4014 4097 705006322 705006404 2.220000e-28 137
15 TraesCS3A01G425600 chr3B 84.000 125 11 4 4457 4572 165819865 165819741 1.350000e-20 111
16 TraesCS3A01G425600 chr3B 91.358 81 7 0 4445 4525 313808924 313809004 1.350000e-20 111
17 TraesCS3A01G425600 chr7A 89.591 269 28 0 4092 4360 21710437 21710705 4.380000e-90 342
18 TraesCS3A01G425600 chr7A 93.671 79 5 0 4457 4535 514886980 514886902 8.040000e-23 119
19 TraesCS3A01G425600 chr2A 89.773 264 27 0 4095 4358 133674165 133674428 5.670000e-89 339
20 TraesCS3A01G425600 chr5D 89.219 269 29 0 4090 4358 135071149 135071417 2.040000e-88 337
21 TraesCS3A01G425600 chr4D 89.219 269 29 0 4093 4361 403022813 403023081 2.040000e-88 337
22 TraesCS3A01G425600 chr2B 89.259 270 27 2 4092 4360 801057308 801057576 2.040000e-88 337
23 TraesCS3A01G425600 chr2B 88.686 274 26 5 4090 4361 64621253 64621523 3.410000e-86 329
24 TraesCS3A01G425600 chr7D 88.930 271 30 0 4090 4360 172372056 172372326 7.330000e-88 335
25 TraesCS3A01G425600 chr7D 86.614 127 8 4 4455 4572 83853041 83852915 1.030000e-26 132
26 TraesCS3A01G425600 chr6D 85.156 128 8 4 4454 4572 307786897 307787022 2.240000e-23 121
27 TraesCS3A01G425600 chr6D 83.721 129 12 3 4453 4572 413031398 413031526 3.740000e-21 113
28 TraesCS3A01G425600 chr5A 95.775 71 3 0 4455 4525 601260556 601260626 1.040000e-21 115
29 TraesCS3A01G425600 chr1D 84.000 125 11 2 4457 4572 63624515 63624639 1.350000e-20 111
30 TraesCS3A01G425600 chr6A 83.465 127 12 3 4454 4571 415092879 415093005 4.840000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G425600 chr3A 667947695 667952268 4573 False 8447.0 8447 100.00000 1 4574 1 chr3A.!!$F1 4573
1 TraesCS3A01G425600 chr3A 669525469 669525976 507 False 309.0 309 78.09500 3047 3562 1 chr3A.!!$F3 515
2 TraesCS3A01G425600 chr3A 669564382 669564944 562 False 289.0 289 76.46000 3047 3617 1 chr3A.!!$F4 570
3 TraesCS3A01G425600 chr3D 532773948 532778034 4086 False 6159.0 6159 93.91000 1 4096 1 chr3D.!!$F1 4095
4 TraesCS3A01G425600 chr3D 533674580 533675089 509 False 327.0 327 78.58500 3047 3562 1 chr3D.!!$F3 515
5 TraesCS3A01G425600 chr3D 533670006 533670513 507 False 298.0 298 77.75700 3047 3562 1 chr3D.!!$F2 515
6 TraesCS3A01G425600 chr3B 705002322 705006404 4082 False 1535.5 3269 93.99975 1 4097 4 chr3B.!!$F4 4096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 319 0.112606 TGGTAATTTCCGTGCCCCAA 59.887 50.0 0.0 0.0 0.00 4.12 F
1152 1192 0.995024 CTGGGGGTTCACTCTCCATT 59.005 55.0 0.0 0.0 0.00 3.16 F
1284 1324 1.165270 GTTTCCCCATCAACGTGGAG 58.835 55.0 0.0 0.0 42.02 3.86 F
2347 2419 0.741221 CGAGTTCCTGCCCTTGCTAC 60.741 60.0 0.0 0.0 38.71 3.58 F
3079 3216 0.756294 TGCCTTCTTGACCGTCTTCA 59.244 50.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1823 0.031111 CCTCCCCAGGTCCACAGATA 60.031 60.0 0.00 0.00 34.60 1.98 R
2299 2371 0.179000 AGCGTAGATTTGAGCCCCTG 59.821 55.0 0.00 0.00 0.00 4.45 R
2580 2711 0.324943 CATGGTGAAGTCGAACCCCT 59.675 55.0 1.62 0.00 35.44 4.79 R
3495 3635 0.038310 GGCAGGTAGGGCACTTCTTT 59.962 55.0 0.00 0.00 0.00 2.52 R
4479 4623 0.027063 ACAAAAGCGTCGTCCGTTTG 59.973 50.0 8.77 8.77 39.19 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 221 2.271173 GCCGACCCCAAACCCTAG 59.729 66.667 0.00 0.00 0.00 3.02
209 222 2.271173 CCGACCCCAAACCCTAGC 59.729 66.667 0.00 0.00 0.00 3.42
210 223 2.271173 CGACCCCAAACCCTAGCC 59.729 66.667 0.00 0.00 0.00 3.93
211 224 2.271173 GACCCCAAACCCTAGCCG 59.729 66.667 0.00 0.00 0.00 5.52
212 225 3.989838 GACCCCAAACCCTAGCCGC 62.990 68.421 0.00 0.00 0.00 6.53
213 226 3.728373 CCCCAAACCCTAGCCGCT 61.728 66.667 0.00 0.00 0.00 5.52
214 227 2.124695 CCCAAACCCTAGCCGCTC 60.125 66.667 0.00 0.00 0.00 5.03
215 228 2.124695 CCAAACCCTAGCCGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
216 229 2.670148 CCAAACCCTAGCCGCTCCT 61.670 63.158 0.00 0.00 0.00 3.69
217 230 1.299976 CAAACCCTAGCCGCTCCTT 59.700 57.895 0.00 0.00 0.00 3.36
218 231 0.744771 CAAACCCTAGCCGCTCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
219 232 1.911702 AAACCCTAGCCGCTCCTTCC 61.912 60.000 0.00 0.00 0.00 3.46
220 233 2.764128 CCCTAGCCGCTCCTTCCA 60.764 66.667 0.00 0.00 0.00 3.53
221 234 2.801631 CCCTAGCCGCTCCTTCCAG 61.802 68.421 0.00 0.00 0.00 3.86
222 235 2.107953 CTAGCCGCTCCTTCCAGC 59.892 66.667 0.00 0.00 35.90 4.85
223 236 3.453070 CTAGCCGCTCCTTCCAGCC 62.453 68.421 0.00 0.00 35.84 4.85
285 319 0.112606 TGGTAATTTCCGTGCCCCAA 59.887 50.000 0.00 0.00 0.00 4.12
295 329 4.531426 TGCCCCAACCAGCGGTTT 62.531 61.111 9.78 0.00 44.33 3.27
350 384 6.902771 TTTTCTGAATTTTGGGGTAATCGA 57.097 33.333 0.00 0.00 0.00 3.59
351 385 7.475137 TTTTCTGAATTTTGGGGTAATCGAT 57.525 32.000 0.00 0.00 0.00 3.59
356 390 3.899052 TTTTGGGGTAATCGATCGAGT 57.101 42.857 23.84 23.19 0.00 4.18
425 459 4.321750 GCTCGGATTCACGGGATTTAGATA 60.322 45.833 0.00 0.00 36.12 1.98
503 540 1.600916 GTCATGGCGATTAGGGGGC 60.601 63.158 0.00 0.00 0.00 5.80
526 563 1.078823 GGTTGGGGAAAGGGAGGAAAT 59.921 52.381 0.00 0.00 0.00 2.17
675 714 1.216427 AGGGGAGGGCATGAAAAGATC 59.784 52.381 0.00 0.00 0.00 2.75
684 723 5.482878 AGGGCATGAAAAGATCAGATGTTTT 59.517 36.000 16.24 16.24 42.53 2.43
685 724 5.579511 GGGCATGAAAAGATCAGATGTTTTG 59.420 40.000 20.15 10.01 42.53 2.44
688 728 7.148689 GGCATGAAAAGATCAGATGTTTTGTTC 60.149 37.037 20.15 9.00 42.53 3.18
771 811 4.614036 GGTGTTGGGTGGTGGGGG 62.614 72.222 0.00 0.00 0.00 5.40
772 812 3.503839 GTGTTGGGTGGTGGGGGA 61.504 66.667 0.00 0.00 0.00 4.81
773 813 3.503839 TGTTGGGTGGTGGGGGAC 61.504 66.667 0.00 0.00 0.00 4.46
789 829 1.584495 GACGAGGCGGCCAATTTTT 59.416 52.632 23.09 0.00 0.00 1.94
829 869 1.144913 ACCCAACCTCTTTGCTGCTTA 59.855 47.619 0.00 0.00 33.34 3.09
857 897 2.368439 GTAGATTTGGCCAGACATGCA 58.632 47.619 5.11 0.00 0.00 3.96
1131 1171 1.271054 CCAGCTGTTGAAGTAGCCAGT 60.271 52.381 13.81 0.00 40.76 4.00
1152 1192 0.995024 CTGGGGGTTCACTCTCCATT 59.005 55.000 0.00 0.00 0.00 3.16
1172 1212 2.340078 TGAGCCTGTCTCACGCAC 59.660 61.111 0.00 0.00 46.34 5.34
1284 1324 1.165270 GTTTCCCCATCAACGTGGAG 58.835 55.000 0.00 0.00 42.02 3.86
1422 1462 5.809001 TGTTTGAGAAGGAGCATCAAGTAT 58.191 37.500 0.00 0.00 36.25 2.12
1460 1500 3.884895 TCACTTTCTGTTTCAGGCAAGA 58.115 40.909 12.85 0.00 31.34 3.02
1576 1616 7.681679 TGAACCATACTGTTTGTAGTTGGATA 58.318 34.615 0.00 0.00 35.11 2.59
1648 1700 5.065988 AGTGTCGTGAAGCTTTTGTTTATGT 59.934 36.000 0.00 0.00 0.00 2.29
1688 1740 6.827251 ATGATAACATTGCAAGTCATCAGACT 59.173 34.615 15.51 0.00 44.64 3.24
1765 1817 3.060895 GTCTTGTGCTTGCTACGATGTAC 59.939 47.826 0.00 0.00 0.00 2.90
1770 1822 2.167487 TGCTTGCTACGATGTACCATCA 59.833 45.455 5.19 0.00 0.00 3.07
1771 1823 3.181466 TGCTTGCTACGATGTACCATCAT 60.181 43.478 5.19 0.00 0.00 2.45
1799 1851 2.306219 GGACCTGGGGAGGCTATTTATC 59.694 54.545 0.00 0.00 0.00 1.75
1912 1964 4.846168 TTTGTTTTAAGGGCTGGGTTTT 57.154 36.364 0.00 0.00 0.00 2.43
2014 2066 2.484062 CCATTCTGCCATGCCCGTC 61.484 63.158 0.00 0.00 0.00 4.79
2066 2118 5.980698 ATCGATGTTGTTGTCATGATCTC 57.019 39.130 0.00 0.00 0.00 2.75
2276 2328 1.268794 CGCTGAGATTACCAGGAGTCG 60.269 57.143 0.00 0.00 32.51 4.18
2298 2370 5.814188 TCGTCATTTCCAGAGATGATTGAAG 59.186 40.000 4.39 0.00 35.01 3.02
2299 2371 5.503683 CGTCATTTCCAGAGATGATTGAAGC 60.504 44.000 4.39 0.00 35.01 3.86
2300 2372 5.356190 GTCATTTCCAGAGATGATTGAAGCA 59.644 40.000 4.39 0.00 35.01 3.91
2301 2373 5.589050 TCATTTCCAGAGATGATTGAAGCAG 59.411 40.000 0.00 0.00 0.00 4.24
2302 2374 3.555527 TCCAGAGATGATTGAAGCAGG 57.444 47.619 0.00 0.00 0.00 4.85
2303 2375 2.172082 TCCAGAGATGATTGAAGCAGGG 59.828 50.000 0.00 0.00 0.00 4.45
2304 2376 2.573369 CAGAGATGATTGAAGCAGGGG 58.427 52.381 0.00 0.00 0.00 4.79
2305 2377 1.133853 AGAGATGATTGAAGCAGGGGC 60.134 52.381 0.00 0.00 41.61 5.80
2320 2392 1.134371 AGGGGCTCAAATCTACGCTTC 60.134 52.381 0.00 0.00 0.00 3.86
2321 2393 0.931005 GGGCTCAAATCTACGCTTCG 59.069 55.000 0.00 0.00 0.00 3.79
2347 2419 0.741221 CGAGTTCCTGCCCTTGCTAC 60.741 60.000 0.00 0.00 38.71 3.58
2534 2665 7.172532 CCATTTACATTAAAGCCGACTATAGCA 59.827 37.037 0.00 0.00 0.00 3.49
2543 2674 1.341209 CCGACTATAGCACAGATGGCA 59.659 52.381 0.00 0.00 0.00 4.92
2580 2711 3.792114 TCTACATAGAGGAGGGAAGGTCA 59.208 47.826 0.00 0.00 0.00 4.02
2637 2769 5.278604 ACGAAAACATCTTTTGGCTTGTAC 58.721 37.500 0.00 0.00 30.33 2.90
2712 2844 2.010582 TTGTTCGGCTGGTGGTTTGC 62.011 55.000 0.00 0.00 0.00 3.68
2744 2876 1.000955 AGAACGGTCTGTAACAGCCTG 59.999 52.381 0.00 0.00 30.83 4.85
2816 2949 9.146984 TGTTTTACCATCTCTATTTTCTGTACG 57.853 33.333 0.00 0.00 0.00 3.67
2879 3012 6.529829 CGTCAAGTCTCTTCCTTCAGATTTAG 59.470 42.308 0.00 0.00 0.00 1.85
2928 3062 8.915057 ATGGATTGTCAACTAGAAATGGATAG 57.085 34.615 0.00 0.00 0.00 2.08
3011 3145 9.593565 TCAGATATAGAAATATCCTGTGTCAGT 57.406 33.333 2.52 0.00 43.47 3.41
3032 3166 9.291664 GTCAGTACTTTATGTTGTAGACAGATC 57.708 37.037 0.00 0.00 42.62 2.75
3079 3216 0.756294 TGCCTTCTTGACCGTCTTCA 59.244 50.000 0.00 0.00 0.00 3.02
3080 3217 1.140052 TGCCTTCTTGACCGTCTTCAA 59.860 47.619 0.00 0.00 34.30 2.69
3287 3427 3.799366 TGTACTTCATCAACACCGTGTT 58.201 40.909 11.24 11.24 42.08 3.32
3321 3461 8.299570 CACCATACATCAGTTTTCTAAAGCTTT 58.700 33.333 17.30 17.30 0.00 3.51
3402 3542 4.381932 CCAAAGGAAACAAAGTTCAGCTGT 60.382 41.667 14.67 0.00 0.00 4.40
3888 4032 7.888546 AGTGTTTCCTGCTTGTTTAGGTATATT 59.111 33.333 0.00 0.00 35.54 1.28
3979 4123 3.847671 TCCTGTCACACCAACACATAA 57.152 42.857 0.00 0.00 0.00 1.90
4080 4224 3.111484 TGCCTGACCAGTATCATACCAA 58.889 45.455 0.00 0.00 0.00 3.67
4109 4253 5.923733 CCCTATTAGGCTAGTCATAGTGG 57.076 47.826 4.01 7.45 32.73 4.00
4110 4254 4.712337 CCCTATTAGGCTAGTCATAGTGGG 59.288 50.000 4.01 0.00 32.73 4.61
4111 4255 5.518546 CCCTATTAGGCTAGTCATAGTGGGA 60.519 48.000 4.01 0.00 32.73 4.37
4112 4256 5.654650 CCTATTAGGCTAGTCATAGTGGGAG 59.345 48.000 0.00 0.00 0.00 4.30
4113 4257 4.537945 TTAGGCTAGTCATAGTGGGAGT 57.462 45.455 0.00 0.00 0.00 3.85
4114 4258 5.658198 TTAGGCTAGTCATAGTGGGAGTA 57.342 43.478 0.00 0.00 0.00 2.59
4115 4259 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
4116 4260 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
4117 4261 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
4118 4262 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
4119 4263 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
4120 4264 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
4121 4265 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
4122 4266 5.520751 AGTCATAGTGGGAGTAACTTAGCT 58.479 41.667 0.00 0.00 0.00 3.32
4123 4267 6.670617 AGTCATAGTGGGAGTAACTTAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
4124 4268 6.773685 AGTCATAGTGGGAGTAACTTAGCTAG 59.226 42.308 0.00 0.00 0.00 3.42
4125 4269 6.771749 GTCATAGTGGGAGTAACTTAGCTAGA 59.228 42.308 0.00 0.00 0.00 2.43
4126 4270 7.284944 GTCATAGTGGGAGTAACTTAGCTAGAA 59.715 40.741 0.00 0.00 0.00 2.10
4127 4271 7.837689 TCATAGTGGGAGTAACTTAGCTAGAAA 59.162 37.037 0.00 0.00 0.00 2.52
4128 4272 6.283544 AGTGGGAGTAACTTAGCTAGAAAC 57.716 41.667 0.00 0.00 0.00 2.78
4129 4273 5.778750 AGTGGGAGTAACTTAGCTAGAAACA 59.221 40.000 0.00 0.00 0.00 2.83
4130 4274 6.440965 AGTGGGAGTAACTTAGCTAGAAACAT 59.559 38.462 0.00 0.00 0.00 2.71
4131 4275 7.618512 AGTGGGAGTAACTTAGCTAGAAACATA 59.381 37.037 0.00 0.00 0.00 2.29
4132 4276 7.921745 GTGGGAGTAACTTAGCTAGAAACATAG 59.078 40.741 0.00 0.00 0.00 2.23
4140 4284 3.577501 GCTAGAAACATAGCGCACTTC 57.422 47.619 11.47 4.50 38.90 3.01
4141 4285 2.930040 GCTAGAAACATAGCGCACTTCA 59.070 45.455 11.47 0.00 38.90 3.02
4142 4286 3.370978 GCTAGAAACATAGCGCACTTCAA 59.629 43.478 11.47 0.00 38.90 2.69
4143 4287 4.493220 GCTAGAAACATAGCGCACTTCAAG 60.493 45.833 11.47 0.00 38.90 3.02
4144 4288 3.664107 AGAAACATAGCGCACTTCAAGA 58.336 40.909 11.47 0.00 0.00 3.02
4145 4289 4.065088 AGAAACATAGCGCACTTCAAGAA 58.935 39.130 11.47 0.00 0.00 2.52
4146 4290 4.515191 AGAAACATAGCGCACTTCAAGAAA 59.485 37.500 11.47 0.00 0.00 2.52
4147 4291 4.829064 AACATAGCGCACTTCAAGAAAA 57.171 36.364 11.47 0.00 0.00 2.29
4148 4292 5.376854 AACATAGCGCACTTCAAGAAAAT 57.623 34.783 11.47 0.00 0.00 1.82
4149 4293 5.376854 ACATAGCGCACTTCAAGAAAATT 57.623 34.783 11.47 0.00 0.00 1.82
4150 4294 5.772521 ACATAGCGCACTTCAAGAAAATTT 58.227 33.333 11.47 0.00 0.00 1.82
4151 4295 6.215845 ACATAGCGCACTTCAAGAAAATTTT 58.784 32.000 11.47 2.28 0.00 1.82
4152 4296 7.367285 ACATAGCGCACTTCAAGAAAATTTTA 58.633 30.769 11.47 0.00 0.00 1.52
4153 4297 7.326063 ACATAGCGCACTTCAAGAAAATTTTAC 59.674 33.333 11.47 0.00 0.00 2.01
4154 4298 5.831997 AGCGCACTTCAAGAAAATTTTACT 58.168 33.333 11.47 0.55 0.00 2.24
4155 4299 6.273071 AGCGCACTTCAAGAAAATTTTACTT 58.727 32.000 11.47 6.61 0.00 2.24
4156 4300 7.422399 AGCGCACTTCAAGAAAATTTTACTTA 58.578 30.769 11.47 0.00 0.00 2.24
4157 4301 7.378728 AGCGCACTTCAAGAAAATTTTACTTAC 59.621 33.333 11.47 0.00 0.00 2.34
4158 4302 7.614499 GCGCACTTCAAGAAAATTTTACTTACG 60.614 37.037 0.30 7.83 0.00 3.18
4159 4303 7.375017 CGCACTTCAAGAAAATTTTACTTACGT 59.625 33.333 2.75 0.00 0.00 3.57
4160 4304 8.469125 GCACTTCAAGAAAATTTTACTTACGTG 58.531 33.333 2.75 14.41 0.00 4.49
4161 4305 8.953990 CACTTCAAGAAAATTTTACTTACGTGG 58.046 33.333 2.75 0.00 0.00 4.94
4162 4306 7.646526 ACTTCAAGAAAATTTTACTTACGTGGC 59.353 33.333 2.75 0.00 0.00 5.01
4163 4307 6.137415 TCAAGAAAATTTTACTTACGTGGCG 58.863 36.000 2.75 0.00 0.00 5.69
4164 4308 5.927954 AGAAAATTTTACTTACGTGGCGA 57.072 34.783 2.75 0.00 0.00 5.54
4165 4309 6.303021 AGAAAATTTTACTTACGTGGCGAA 57.697 33.333 2.75 0.00 0.00 4.70
4166 4310 6.905578 AGAAAATTTTACTTACGTGGCGAAT 58.094 32.000 2.75 0.00 0.00 3.34
4167 4311 8.031848 AGAAAATTTTACTTACGTGGCGAATA 57.968 30.769 2.75 0.00 0.00 1.75
4168 4312 8.173130 AGAAAATTTTACTTACGTGGCGAATAG 58.827 33.333 2.75 0.00 0.00 1.73
4169 4313 6.973229 AATTTTACTTACGTGGCGAATAGT 57.027 33.333 0.00 0.00 0.00 2.12
4170 4314 6.973229 ATTTTACTTACGTGGCGAATAGTT 57.027 33.333 0.00 0.00 0.00 2.24
4171 4315 8.477984 AATTTTACTTACGTGGCGAATAGTTA 57.522 30.769 0.00 0.00 0.00 2.24
4172 4316 7.881643 TTTTACTTACGTGGCGAATAGTTAA 57.118 32.000 0.00 0.00 0.00 2.01
4173 4317 8.477984 TTTTACTTACGTGGCGAATAGTTAAT 57.522 30.769 0.00 0.00 0.00 1.40
4174 4318 5.961395 ACTTACGTGGCGAATAGTTAATG 57.039 39.130 0.00 0.00 0.00 1.90
4175 4319 5.653507 ACTTACGTGGCGAATAGTTAATGA 58.346 37.500 0.00 0.00 0.00 2.57
4176 4320 5.747197 ACTTACGTGGCGAATAGTTAATGAG 59.253 40.000 0.00 0.00 0.00 2.90
4177 4321 4.380841 ACGTGGCGAATAGTTAATGAGA 57.619 40.909 0.00 0.00 0.00 3.27
4178 4322 4.751060 ACGTGGCGAATAGTTAATGAGAA 58.249 39.130 0.00 0.00 0.00 2.87
4179 4323 4.804139 ACGTGGCGAATAGTTAATGAGAAG 59.196 41.667 0.00 0.00 0.00 2.85
4180 4324 4.804139 CGTGGCGAATAGTTAATGAGAAGT 59.196 41.667 0.00 0.00 0.00 3.01
4181 4325 5.276395 CGTGGCGAATAGTTAATGAGAAGTG 60.276 44.000 0.00 0.00 0.00 3.16
4182 4326 5.006746 GTGGCGAATAGTTAATGAGAAGTGG 59.993 44.000 0.00 0.00 0.00 4.00
4183 4327 5.116882 GGCGAATAGTTAATGAGAAGTGGT 58.883 41.667 0.00 0.00 0.00 4.16
4184 4328 6.127281 TGGCGAATAGTTAATGAGAAGTGGTA 60.127 38.462 0.00 0.00 0.00 3.25
4185 4329 6.759827 GGCGAATAGTTAATGAGAAGTGGTAA 59.240 38.462 0.00 0.00 0.00 2.85
4186 4330 7.254353 GGCGAATAGTTAATGAGAAGTGGTAAC 60.254 40.741 0.00 0.00 0.00 2.50
4216 4360 7.958053 ATGTTACTATAACATAGCGGTTTCC 57.042 36.000 11.57 0.00 38.94 3.13
4217 4361 7.116075 TGTTACTATAACATAGCGGTTTCCT 57.884 36.000 0.00 0.00 32.29 3.36
4218 4362 8.236585 TGTTACTATAACATAGCGGTTTCCTA 57.763 34.615 0.00 0.00 32.29 2.94
4219 4363 8.355169 TGTTACTATAACATAGCGGTTTCCTAG 58.645 37.037 0.00 0.00 32.29 3.02
4220 4364 8.571336 GTTACTATAACATAGCGGTTTCCTAGA 58.429 37.037 0.00 0.00 32.29 2.43
4221 4365 7.778185 ACTATAACATAGCGGTTTCCTAGAT 57.222 36.000 0.00 0.00 32.29 1.98
4222 4366 8.874744 ACTATAACATAGCGGTTTCCTAGATA 57.125 34.615 0.00 0.00 32.29 1.98
4223 4367 9.305555 ACTATAACATAGCGGTTTCCTAGATAA 57.694 33.333 0.00 0.00 32.29 1.75
4227 4371 7.730364 ACATAGCGGTTTCCTAGATAAAATG 57.270 36.000 0.00 0.00 0.00 2.32
4228 4372 7.506114 ACATAGCGGTTTCCTAGATAAAATGA 58.494 34.615 0.00 0.00 0.00 2.57
4229 4373 7.657761 ACATAGCGGTTTCCTAGATAAAATGAG 59.342 37.037 0.00 0.00 0.00 2.90
4230 4374 5.990668 AGCGGTTTCCTAGATAAAATGAGT 58.009 37.500 0.00 0.00 0.00 3.41
4231 4375 6.415573 AGCGGTTTCCTAGATAAAATGAGTT 58.584 36.000 0.00 0.00 0.00 3.01
4232 4376 6.884836 AGCGGTTTCCTAGATAAAATGAGTTT 59.115 34.615 0.00 0.00 0.00 2.66
4233 4377 8.044908 AGCGGTTTCCTAGATAAAATGAGTTTA 58.955 33.333 0.00 0.00 36.14 2.01
4234 4378 8.121086 GCGGTTTCCTAGATAAAATGAGTTTAC 58.879 37.037 0.00 0.00 34.50 2.01
4235 4379 9.158233 CGGTTTCCTAGATAAAATGAGTTTACA 57.842 33.333 0.00 0.00 34.50 2.41
4284 4428 8.530269 AACACTACTAGTATGTTACTTTGCAC 57.470 34.615 20.06 0.00 40.14 4.57
4285 4429 7.893658 ACACTACTAGTATGTTACTTTGCACT 58.106 34.615 2.33 0.00 40.14 4.40
4286 4430 9.017509 ACACTACTAGTATGTTACTTTGCACTA 57.982 33.333 2.33 0.00 40.14 2.74
4291 4435 8.198109 ACTAGTATGTTACTTTGCACTATGAGG 58.802 37.037 0.00 0.00 40.14 3.86
4292 4436 7.182817 AGTATGTTACTTTGCACTATGAGGA 57.817 36.000 0.00 0.00 34.86 3.71
4293 4437 7.796054 AGTATGTTACTTTGCACTATGAGGAT 58.204 34.615 0.00 0.00 34.86 3.24
4294 4438 8.924303 AGTATGTTACTTTGCACTATGAGGATA 58.076 33.333 0.00 0.00 34.86 2.59
4295 4439 9.197694 GTATGTTACTTTGCACTATGAGGATAG 57.802 37.037 0.00 0.00 38.06 2.08
4296 4440 7.182817 TGTTACTTTGCACTATGAGGATAGT 57.817 36.000 0.00 0.00 44.86 2.12
4297 4441 8.301252 TGTTACTTTGCACTATGAGGATAGTA 57.699 34.615 0.00 0.00 42.55 1.82
4298 4442 8.755028 TGTTACTTTGCACTATGAGGATAGTAA 58.245 33.333 0.00 0.00 42.55 2.24
4299 4443 9.032420 GTTACTTTGCACTATGAGGATAGTAAC 57.968 37.037 10.45 10.45 42.55 2.50
4300 4444 7.425224 ACTTTGCACTATGAGGATAGTAACT 57.575 36.000 0.00 0.00 42.55 2.24
4301 4445 7.852263 ACTTTGCACTATGAGGATAGTAACTT 58.148 34.615 0.00 0.00 42.55 2.66
4302 4446 7.766278 ACTTTGCACTATGAGGATAGTAACTTG 59.234 37.037 0.00 0.00 42.55 3.16
4303 4447 6.161855 TGCACTATGAGGATAGTAACTTGG 57.838 41.667 0.00 0.00 42.55 3.61
4304 4448 5.897250 TGCACTATGAGGATAGTAACTTGGA 59.103 40.000 0.00 0.00 42.55 3.53
4305 4449 6.183360 TGCACTATGAGGATAGTAACTTGGAC 60.183 42.308 0.00 0.00 42.55 4.02
4306 4450 6.041069 GCACTATGAGGATAGTAACTTGGACT 59.959 42.308 0.00 0.00 42.55 3.85
4307 4451 7.230913 GCACTATGAGGATAGTAACTTGGACTA 59.769 40.741 0.00 0.00 42.55 2.59
4308 4452 9.132923 CACTATGAGGATAGTAACTTGGACTAA 57.867 37.037 0.00 0.00 42.55 2.24
4309 4453 9.884814 ACTATGAGGATAGTAACTTGGACTAAT 57.115 33.333 0.00 0.00 42.61 1.73
4311 4455 7.973048 TGAGGATAGTAACTTGGACTAATGT 57.027 36.000 0.00 0.00 33.24 2.71
4312 4456 8.008513 TGAGGATAGTAACTTGGACTAATGTC 57.991 38.462 0.00 0.00 42.22 3.06
4313 4457 7.618117 TGAGGATAGTAACTTGGACTAATGTCA 59.382 37.037 0.00 0.00 44.61 3.58
4314 4458 8.554490 AGGATAGTAACTTGGACTAATGTCAT 57.446 34.615 0.00 0.00 44.61 3.06
4315 4459 9.656323 AGGATAGTAACTTGGACTAATGTCATA 57.344 33.333 0.00 0.00 44.61 2.15
4316 4460 9.694137 GGATAGTAACTTGGACTAATGTCATAC 57.306 37.037 0.00 0.00 44.61 2.39
4317 4461 9.395707 GATAGTAACTTGGACTAATGTCATACG 57.604 37.037 0.00 0.00 44.61 3.06
4318 4462 6.040878 AGTAACTTGGACTAATGTCATACGC 58.959 40.000 0.00 0.00 44.61 4.42
4319 4463 4.465632 ACTTGGACTAATGTCATACGCA 57.534 40.909 0.00 0.00 44.61 5.24
4320 4464 5.023533 ACTTGGACTAATGTCATACGCAT 57.976 39.130 0.00 0.00 44.61 4.73
4321 4465 4.811024 ACTTGGACTAATGTCATACGCATG 59.189 41.667 0.00 0.00 44.61 4.06
4322 4466 4.664150 TGGACTAATGTCATACGCATGA 57.336 40.909 0.00 0.00 44.61 3.07
4323 4467 5.213891 TGGACTAATGTCATACGCATGAT 57.786 39.130 0.76 0.00 43.03 2.45
4324 4468 6.339587 TGGACTAATGTCATACGCATGATA 57.660 37.500 0.76 0.00 43.03 2.15
4325 4469 6.156519 TGGACTAATGTCATACGCATGATAC 58.843 40.000 0.76 0.00 43.03 2.24
4326 4470 6.015434 TGGACTAATGTCATACGCATGATACT 60.015 38.462 0.76 0.00 43.03 2.12
4327 4471 7.175990 TGGACTAATGTCATACGCATGATACTA 59.824 37.037 0.76 0.00 43.03 1.82
4328 4472 7.698550 GGACTAATGTCATACGCATGATACTAG 59.301 40.741 8.72 8.72 43.03 2.57
4329 4473 8.112016 ACTAATGTCATACGCATGATACTAGT 57.888 34.615 9.80 9.80 43.03 2.57
4330 4474 9.227777 ACTAATGTCATACGCATGATACTAGTA 57.772 33.333 12.93 4.77 40.98 1.82
4335 4479 9.227777 TGTCATACGCATGATACTAGTATAAGT 57.772 33.333 15.42 12.50 43.03 2.24
4341 4485 8.728833 ACGCATGATACTAGTATAAGTTACTCC 58.271 37.037 15.42 0.96 0.00 3.85
4342 4486 8.948145 CGCATGATACTAGTATAAGTTACTCCT 58.052 37.037 15.42 0.00 0.00 3.69
4355 4499 5.855740 AGTTACTCCTCACTATAACCAGC 57.144 43.478 0.00 0.00 0.00 4.85
4356 4500 4.650131 AGTTACTCCTCACTATAACCAGCC 59.350 45.833 0.00 0.00 0.00 4.85
4357 4501 3.406512 ACTCCTCACTATAACCAGCCT 57.593 47.619 0.00 0.00 0.00 4.58
4358 4502 3.725634 ACTCCTCACTATAACCAGCCTT 58.274 45.455 0.00 0.00 0.00 4.35
4359 4503 4.880164 ACTCCTCACTATAACCAGCCTTA 58.120 43.478 0.00 0.00 0.00 2.69
4360 4504 4.896482 ACTCCTCACTATAACCAGCCTTAG 59.104 45.833 0.00 0.00 0.00 2.18
4361 4505 4.223953 TCCTCACTATAACCAGCCTTAGG 58.776 47.826 0.00 0.00 0.00 2.69
4362 4506 4.078805 TCCTCACTATAACCAGCCTTAGGA 60.079 45.833 0.69 0.00 0.00 2.94
4363 4507 4.654262 CCTCACTATAACCAGCCTTAGGAA 59.346 45.833 0.69 0.00 0.00 3.36
4364 4508 5.453480 CCTCACTATAACCAGCCTTAGGAAC 60.453 48.000 0.69 0.00 0.00 3.62
4365 4509 4.098960 TCACTATAACCAGCCTTAGGAACG 59.901 45.833 0.69 0.00 0.00 3.95
4366 4510 2.327200 ATAACCAGCCTTAGGAACGC 57.673 50.000 0.69 0.00 0.00 4.84
4367 4511 0.978151 TAACCAGCCTTAGGAACGCA 59.022 50.000 0.69 0.00 0.00 5.24
4368 4512 0.328258 AACCAGCCTTAGGAACGCAT 59.672 50.000 0.69 0.00 0.00 4.73
4369 4513 0.392998 ACCAGCCTTAGGAACGCATG 60.393 55.000 0.69 0.00 0.00 4.06
4370 4514 0.107703 CCAGCCTTAGGAACGCATGA 60.108 55.000 0.69 0.00 0.00 3.07
4371 4515 1.678728 CCAGCCTTAGGAACGCATGAA 60.679 52.381 0.69 0.00 0.00 2.57
4372 4516 2.292267 CAGCCTTAGGAACGCATGAAT 58.708 47.619 0.69 0.00 0.00 2.57
4373 4517 2.032550 CAGCCTTAGGAACGCATGAATG 59.967 50.000 0.69 0.00 0.00 2.67
4374 4518 2.017049 GCCTTAGGAACGCATGAATGT 58.983 47.619 0.69 0.00 0.00 2.71
4375 4519 2.423538 GCCTTAGGAACGCATGAATGTT 59.576 45.455 0.69 0.00 0.00 2.71
4376 4520 3.625764 GCCTTAGGAACGCATGAATGTTA 59.374 43.478 0.69 0.00 0.00 2.41
4377 4521 4.260784 GCCTTAGGAACGCATGAATGTTAG 60.261 45.833 0.69 0.00 0.00 2.34
4378 4522 4.273480 CCTTAGGAACGCATGAATGTTAGG 59.727 45.833 0.00 0.00 0.00 2.69
4379 4523 3.627395 AGGAACGCATGAATGTTAGGA 57.373 42.857 0.00 0.00 0.00 2.94
4380 4524 3.950397 AGGAACGCATGAATGTTAGGAA 58.050 40.909 0.00 0.00 0.00 3.36
4381 4525 4.331968 AGGAACGCATGAATGTTAGGAAA 58.668 39.130 0.00 0.00 0.00 3.13
4382 4526 4.764823 AGGAACGCATGAATGTTAGGAAAA 59.235 37.500 0.00 0.00 0.00 2.29
4383 4527 5.242838 AGGAACGCATGAATGTTAGGAAAAA 59.757 36.000 0.00 0.00 0.00 1.94
4384 4528 6.071391 AGGAACGCATGAATGTTAGGAAAAAT 60.071 34.615 0.00 0.00 0.00 1.82
4385 4529 7.122055 AGGAACGCATGAATGTTAGGAAAAATA 59.878 33.333 0.00 0.00 0.00 1.40
4386 4530 7.757624 GGAACGCATGAATGTTAGGAAAAATAA 59.242 33.333 0.00 0.00 0.00 1.40
4387 4531 8.687824 AACGCATGAATGTTAGGAAAAATAAG 57.312 30.769 0.00 0.00 0.00 1.73
4388 4532 8.050778 ACGCATGAATGTTAGGAAAAATAAGA 57.949 30.769 0.00 0.00 0.00 2.10
4389 4533 8.519526 ACGCATGAATGTTAGGAAAAATAAGAA 58.480 29.630 0.00 0.00 0.00 2.52
4390 4534 9.520204 CGCATGAATGTTAGGAAAAATAAGAAT 57.480 29.630 0.00 0.00 0.00 2.40
4406 4550 8.494016 AAATAAGAATAGGAAGAAACACTCGG 57.506 34.615 0.00 0.00 0.00 4.63
4407 4551 5.740290 AAGAATAGGAAGAAACACTCGGA 57.260 39.130 0.00 0.00 0.00 4.55
4408 4552 5.740290 AGAATAGGAAGAAACACTCGGAA 57.260 39.130 0.00 0.00 0.00 4.30
4409 4553 6.301169 AGAATAGGAAGAAACACTCGGAAT 57.699 37.500 0.00 0.00 0.00 3.01
4410 4554 7.419711 AGAATAGGAAGAAACACTCGGAATA 57.580 36.000 0.00 0.00 0.00 1.75
4411 4555 7.848128 AGAATAGGAAGAAACACTCGGAATAA 58.152 34.615 0.00 0.00 0.00 1.40
4412 4556 7.982354 AGAATAGGAAGAAACACTCGGAATAAG 59.018 37.037 0.00 0.00 0.00 1.73
4413 4557 5.740290 AGGAAGAAACACTCGGAATAAGA 57.260 39.130 0.00 0.00 0.00 2.10
4414 4558 6.110411 AGGAAGAAACACTCGGAATAAGAA 57.890 37.500 0.00 0.00 0.00 2.52
4415 4559 6.712276 AGGAAGAAACACTCGGAATAAGAAT 58.288 36.000 0.00 0.00 0.00 2.40
4416 4560 7.848128 AGGAAGAAACACTCGGAATAAGAATA 58.152 34.615 0.00 0.00 0.00 1.75
4417 4561 7.982354 AGGAAGAAACACTCGGAATAAGAATAG 59.018 37.037 0.00 0.00 0.00 1.73
4418 4562 7.764901 GGAAGAAACACTCGGAATAAGAATAGT 59.235 37.037 0.00 0.00 0.00 2.12
4419 4563 9.152595 GAAGAAACACTCGGAATAAGAATAGTT 57.847 33.333 0.00 0.00 0.00 2.24
4473 4617 2.667473 TTAGAGCAACTCTAACGGCC 57.333 50.000 11.99 0.00 44.85 6.13
4474 4618 0.822164 TAGAGCAACTCTAACGGCCC 59.178 55.000 0.00 0.00 39.74 5.80
4475 4619 1.810030 GAGCAACTCTAACGGCCCG 60.810 63.158 0.00 0.00 0.00 6.13
4476 4620 2.221906 GAGCAACTCTAACGGCCCGA 62.222 60.000 11.71 0.00 0.00 5.14
4477 4621 2.098831 GCAACTCTAACGGCCCGAC 61.099 63.158 11.71 0.00 0.00 4.79
4478 4622 1.590147 CAACTCTAACGGCCCGACT 59.410 57.895 11.71 0.00 0.00 4.18
4479 4623 0.458025 CAACTCTAACGGCCCGACTC 60.458 60.000 11.71 0.00 0.00 3.36
4480 4624 0.896940 AACTCTAACGGCCCGACTCA 60.897 55.000 11.71 0.00 0.00 3.41
4481 4625 0.896940 ACTCTAACGGCCCGACTCAA 60.897 55.000 11.71 0.00 0.00 3.02
4482 4626 0.245539 CTCTAACGGCCCGACTCAAA 59.754 55.000 11.71 0.00 0.00 2.69
4483 4627 0.037975 TCTAACGGCCCGACTCAAAC 60.038 55.000 11.71 0.00 0.00 2.93
4484 4628 1.349259 CTAACGGCCCGACTCAAACG 61.349 60.000 11.71 0.00 0.00 3.60
4502 4646 3.621520 GACGACGCTTTTGTCCGT 58.378 55.556 0.00 0.00 40.85 4.69
4503 4647 1.929376 GACGACGCTTTTGTCCGTT 59.071 52.632 0.00 0.00 37.87 4.44
4504 4648 0.302589 GACGACGCTTTTGTCCGTTT 59.697 50.000 0.00 0.00 37.87 3.60
4505 4649 0.728542 ACGACGCTTTTGTCCGTTTT 59.271 45.000 0.00 0.00 37.87 2.43
4506 4650 1.130938 ACGACGCTTTTGTCCGTTTTT 59.869 42.857 0.00 0.00 37.87 1.94
4523 4667 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
4524 4668 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
4538 4682 4.736896 GGCCCGACGGACACAGTC 62.737 72.222 17.49 0.00 36.99 3.51
4539 4683 3.681835 GCCCGACGGACACAGTCT 61.682 66.667 17.49 0.00 36.53 3.24
4540 4684 2.258591 CCCGACGGACACAGTCTG 59.741 66.667 17.49 0.00 43.83 3.51
4551 4695 0.937304 CACAGTCTGTGTTTGGGTCG 59.063 55.000 22.62 0.00 43.08 4.79
4552 4696 0.539986 ACAGTCTGTGTTTGGGTCGT 59.460 50.000 4.21 0.00 34.94 4.34
4553 4697 1.217882 CAGTCTGTGTTTGGGTCGTC 58.782 55.000 0.00 0.00 0.00 4.20
4554 4698 0.249322 AGTCTGTGTTTGGGTCGTCG 60.249 55.000 0.00 0.00 0.00 5.12
4555 4699 1.593209 TCTGTGTTTGGGTCGTCGC 60.593 57.895 0.00 0.00 0.00 5.19
4556 4700 2.938823 CTGTGTTTGGGTCGTCGCG 61.939 63.158 0.00 0.00 0.00 5.87
4557 4701 2.659244 GTGTTTGGGTCGTCGCGA 60.659 61.111 3.71 3.71 0.00 5.87
4558 4702 2.355363 TGTTTGGGTCGTCGCGAG 60.355 61.111 10.24 3.82 36.23 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.553690 GGCCACTGGACTGGAAGCTA 61.554 60.000 0.00 0.00 37.60 3.32
33 34 1.588403 CCTCTCATCACTGCGCTCG 60.588 63.158 9.73 1.70 0.00 5.03
34 35 0.248990 CTCCTCTCATCACTGCGCTC 60.249 60.000 9.73 0.00 0.00 5.03
210 223 4.479993 CTGGGGCTGGAAGGAGCG 62.480 72.222 0.00 0.00 40.13 5.03
211 224 4.811364 GCTGGGGCTGGAAGGAGC 62.811 72.222 0.00 0.00 38.34 4.70
212 225 4.120755 GGCTGGGGCTGGAAGGAG 62.121 72.222 0.00 0.00 38.73 3.69
224 237 4.208686 GTCGGTAGGAGCGGCTGG 62.209 72.222 7.50 0.00 40.93 4.85
225 238 4.208686 GGTCGGTAGGAGCGGCTG 62.209 72.222 7.50 0.00 43.92 4.85
314 348 0.802494 CAGAAAAATACCACGGCGCT 59.198 50.000 6.90 0.00 0.00 5.92
380 414 1.006825 GGTTTCAACATTTCGCCCGC 61.007 55.000 0.00 0.00 0.00 6.13
425 459 2.628657 CCCGTATCTCCCTCGAAAATCT 59.371 50.000 0.00 0.00 0.00 2.40
503 540 0.251787 CCTCCCTTTCCCCAACCAAG 60.252 60.000 0.00 0.00 0.00 3.61
684 723 5.952347 ACAGTACATGGAGATGTAGAGAACA 59.048 40.000 0.00 0.00 44.16 3.18
685 724 6.458232 ACAGTACATGGAGATGTAGAGAAC 57.542 41.667 0.00 0.00 44.16 3.01
688 728 7.994425 AGATACAGTACATGGAGATGTAGAG 57.006 40.000 8.50 0.00 44.16 2.43
771 811 0.456142 GAAAAATTGGCCGCCTCGTC 60.456 55.000 11.61 0.00 0.00 4.20
772 812 1.584495 GAAAAATTGGCCGCCTCGT 59.416 52.632 11.61 0.00 0.00 4.18
773 813 1.153842 GGAAAAATTGGCCGCCTCG 60.154 57.895 11.61 0.00 0.00 4.63
789 829 3.245122 GGTAGATTGTGGACAAAAGGGGA 60.245 47.826 0.00 0.00 39.55 4.81
829 869 2.684881 CTGGCCAAATCTACGCAATTCT 59.315 45.455 7.01 0.00 0.00 2.40
1131 1171 0.490017 TGGAGAGTGAACCCCCAGTA 59.510 55.000 0.00 0.00 0.00 2.74
1190 1230 3.499737 CGTAAAGCAGGGCAGCCG 61.500 66.667 5.00 0.00 34.23 5.52
1221 1261 0.604511 CAGCAGCAGATGACACCACA 60.605 55.000 0.00 0.00 31.30 4.17
1244 1284 5.329035 ACTATTCATGCCAATGTTTGACC 57.671 39.130 0.00 0.00 35.15 4.02
1284 1324 3.313249 TCGCAACATCATCATCAATCACC 59.687 43.478 0.00 0.00 0.00 4.02
1444 1484 3.351740 TGTTGTCTTGCCTGAAACAGAA 58.648 40.909 0.00 0.00 32.44 3.02
1460 1500 0.389391 CTGTCCTGGACGACTGTTGT 59.611 55.000 21.15 0.00 34.95 3.32
1625 1665 5.270853 ACATAAACAAAAGCTTCACGACAC 58.729 37.500 0.00 0.00 0.00 3.67
1648 1700 6.604171 ATGTTATCATGCAAATCCTACAGGA 58.396 36.000 0.00 0.00 39.69 3.86
1688 1740 3.766676 TTTGCACGCTAAACAGTCAAA 57.233 38.095 0.00 0.00 0.00 2.69
1765 1817 2.039480 CCCAGGTCCACAGATATGATGG 59.961 54.545 0.00 0.00 34.58 3.51
1770 1822 1.415126 CCTCCCCAGGTCCACAGATAT 60.415 57.143 0.00 0.00 34.60 1.63
1771 1823 0.031111 CCTCCCCAGGTCCACAGATA 60.031 60.000 0.00 0.00 34.60 1.98
2046 2098 5.729974 ATGAGATCATGACAACAACATCG 57.270 39.130 0.00 0.00 34.83 3.84
2066 2118 5.010012 GGAGGCCAAAGTAATATCAACCATG 59.990 44.000 5.01 0.00 0.00 3.66
2115 2167 6.772716 GTGATGTCCATATTAACCTGTCCATT 59.227 38.462 0.00 0.00 0.00 3.16
2179 2231 5.069119 CCTGTATACCACTGTGCTCTAATGA 59.931 44.000 1.29 0.00 0.00 2.57
2257 2309 1.751924 ACGACTCCTGGTAATCTCAGC 59.248 52.381 0.00 0.00 0.00 4.26
2259 2311 3.081710 TGACGACTCCTGGTAATCTCA 57.918 47.619 0.00 0.00 0.00 3.27
2276 2328 5.356190 TGCTTCAATCATCTCTGGAAATGAC 59.644 40.000 0.00 0.00 34.88 3.06
2298 2370 1.440145 GCGTAGATTTGAGCCCCTGC 61.440 60.000 0.00 0.00 37.95 4.85
2299 2371 0.179000 AGCGTAGATTTGAGCCCCTG 59.821 55.000 0.00 0.00 0.00 4.45
2300 2372 0.912486 AAGCGTAGATTTGAGCCCCT 59.088 50.000 0.00 0.00 19.96 4.79
2301 2373 1.300481 GAAGCGTAGATTTGAGCCCC 58.700 55.000 0.00 0.00 34.67 5.80
2302 2374 0.931005 CGAAGCGTAGATTTGAGCCC 59.069 55.000 0.00 0.00 40.20 5.19
2303 2375 1.922570 TCGAAGCGTAGATTTGAGCC 58.077 50.000 0.00 0.00 41.86 4.70
2306 2378 3.863424 GGAATGTCGAAGCGTAGATTTGA 59.137 43.478 0.00 0.00 44.82 2.69
2307 2379 3.301835 CGGAATGTCGAAGCGTAGATTTG 60.302 47.826 0.00 0.00 34.67 2.32
2308 2380 2.858344 CGGAATGTCGAAGCGTAGATTT 59.142 45.455 0.00 0.00 34.67 2.17
2309 2381 2.098607 TCGGAATGTCGAAGCGTAGATT 59.901 45.455 0.00 0.00 41.04 2.40
2315 2387 0.640768 GAACTCGGAATGTCGAAGCG 59.359 55.000 0.00 0.00 38.77 4.68
2320 2392 1.084370 GGCAGGAACTCGGAATGTCG 61.084 60.000 0.00 0.00 34.60 4.35
2321 2393 0.744771 GGGCAGGAACTCGGAATGTC 60.745 60.000 0.00 0.00 34.60 3.06
2426 2498 9.976511 CAAGCATCATGGAAAACTTCATATAAT 57.023 29.630 0.00 0.00 0.00 1.28
2427 2499 9.187996 TCAAGCATCATGGAAAACTTCATATAA 57.812 29.630 0.00 0.00 0.00 0.98
2428 2500 8.750515 TCAAGCATCATGGAAAACTTCATATA 57.249 30.769 0.00 0.00 0.00 0.86
2492 2623 7.526142 TGTAAATGGCAACCATAAAACACTA 57.474 32.000 0.00 0.00 44.40 2.74
2534 2665 2.770802 AGAGCTCATACTTGCCATCTGT 59.229 45.455 17.77 0.00 0.00 3.41
2580 2711 0.324943 CATGGTGAAGTCGAACCCCT 59.675 55.000 1.62 0.00 35.44 4.79
2637 2769 0.961753 GAAGTGAACAAAGGCAGGGG 59.038 55.000 0.00 0.00 0.00 4.79
2712 2844 5.290386 ACAGACCGTTCTTAAGAAACAGAG 58.710 41.667 19.30 10.46 35.58 3.35
2795 2927 8.459911 TGATCGTACAGAAAATAGAGATGGTA 57.540 34.615 0.00 0.00 0.00 3.25
2928 3062 3.449018 ACTATGAGACTGACCACCATCAC 59.551 47.826 0.00 0.00 0.00 3.06
3006 3140 9.291664 GATCTGTCTACAACATAAAGTACTGAC 57.708 37.037 0.00 0.00 37.23 3.51
3287 3427 8.486210 AGAAAACTGATGTATGGTGCTAATCTA 58.514 33.333 0.00 0.00 0.00 1.98
3321 3461 2.265182 GGGCTGCGGTGTTTAAGCA 61.265 57.895 0.00 0.00 37.40 3.91
3402 3542 1.558294 AGCTCATTCATGCAGACTGGA 59.442 47.619 4.26 0.73 0.00 3.86
3495 3635 0.038310 GGCAGGTAGGGCACTTCTTT 59.962 55.000 0.00 0.00 0.00 2.52
3837 3977 4.705337 AAAACTAAACACGCAGGAAACA 57.295 36.364 0.00 0.00 0.00 2.83
3864 4005 9.914834 ATAATATACCTAAACAAGCAGGAAACA 57.085 29.630 0.00 0.00 35.76 2.83
3899 4043 4.261994 GCCCAAACATTTTCTAGAGTTGCA 60.262 41.667 0.00 0.00 0.00 4.08
3979 4123 2.892025 GGATGAGCCCAGCAACAAT 58.108 52.632 0.00 0.00 0.00 2.71
4008 4152 2.473816 GAGCCCAGCAACAACTTTTTC 58.526 47.619 0.00 0.00 0.00 2.29
4011 4155 0.465460 TCGAGCCCAGCAACAACTTT 60.465 50.000 0.00 0.00 0.00 2.66
4012 4156 0.465460 TTCGAGCCCAGCAACAACTT 60.465 50.000 0.00 0.00 0.00 2.66
4013 4157 0.465460 TTTCGAGCCCAGCAACAACT 60.465 50.000 0.00 0.00 0.00 3.16
4097 4241 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
4098 4242 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
4099 4243 5.520751 AGCTAAGTTACTCCCACTATGACT 58.479 41.667 0.00 0.00 0.00 3.41
4100 4244 5.855740 AGCTAAGTTACTCCCACTATGAC 57.144 43.478 0.00 0.00 0.00 3.06
4101 4245 6.907961 TCTAGCTAAGTTACTCCCACTATGA 58.092 40.000 0.00 0.00 0.00 2.15
4102 4246 7.584122 TTCTAGCTAAGTTACTCCCACTATG 57.416 40.000 0.00 0.00 0.00 2.23
4103 4247 7.618512 TGTTTCTAGCTAAGTTACTCCCACTAT 59.381 37.037 0.00 0.00 0.00 2.12
4104 4248 6.950041 TGTTTCTAGCTAAGTTACTCCCACTA 59.050 38.462 0.00 0.00 0.00 2.74
4105 4249 5.778750 TGTTTCTAGCTAAGTTACTCCCACT 59.221 40.000 0.00 0.00 0.00 4.00
4106 4250 6.034161 TGTTTCTAGCTAAGTTACTCCCAC 57.966 41.667 0.00 0.00 0.00 4.61
4107 4251 6.869206 ATGTTTCTAGCTAAGTTACTCCCA 57.131 37.500 0.00 0.00 0.00 4.37
4108 4252 6.924612 GCTATGTTTCTAGCTAAGTTACTCCC 59.075 42.308 0.00 0.00 40.79 4.30
4109 4253 6.637658 CGCTATGTTTCTAGCTAAGTTACTCC 59.362 42.308 0.00 0.00 41.61 3.85
4110 4254 6.142639 GCGCTATGTTTCTAGCTAAGTTACTC 59.857 42.308 0.00 0.00 41.61 2.59
4111 4255 5.978322 GCGCTATGTTTCTAGCTAAGTTACT 59.022 40.000 0.00 0.00 41.61 2.24
4112 4256 5.747197 TGCGCTATGTTTCTAGCTAAGTTAC 59.253 40.000 9.73 0.00 41.61 2.50
4113 4257 5.747197 GTGCGCTATGTTTCTAGCTAAGTTA 59.253 40.000 9.73 0.00 41.61 2.24
4114 4258 4.567159 GTGCGCTATGTTTCTAGCTAAGTT 59.433 41.667 9.73 0.00 41.61 2.66
4115 4259 4.113354 GTGCGCTATGTTTCTAGCTAAGT 58.887 43.478 9.73 0.00 41.61 2.24
4116 4260 4.363999 AGTGCGCTATGTTTCTAGCTAAG 58.636 43.478 9.73 0.00 41.61 2.18
4117 4261 4.386867 AGTGCGCTATGTTTCTAGCTAA 57.613 40.909 9.73 0.00 41.61 3.09
4118 4262 4.142249 TGAAGTGCGCTATGTTTCTAGCTA 60.142 41.667 9.73 0.00 41.61 3.32
4119 4263 2.969628 AGTGCGCTATGTTTCTAGCT 57.030 45.000 9.73 0.00 41.61 3.32
4120 4264 2.930040 TGAAGTGCGCTATGTTTCTAGC 59.070 45.455 9.73 0.00 40.61 3.42
4121 4265 4.864806 TCTTGAAGTGCGCTATGTTTCTAG 59.135 41.667 9.73 11.01 0.00 2.43
4122 4266 4.816392 TCTTGAAGTGCGCTATGTTTCTA 58.184 39.130 9.73 1.95 0.00 2.10
4123 4267 3.664107 TCTTGAAGTGCGCTATGTTTCT 58.336 40.909 9.73 0.00 0.00 2.52
4124 4268 4.404507 TTCTTGAAGTGCGCTATGTTTC 57.595 40.909 9.73 6.01 0.00 2.78
4125 4269 4.829064 TTTCTTGAAGTGCGCTATGTTT 57.171 36.364 9.73 0.00 0.00 2.83
4126 4270 4.829064 TTTTCTTGAAGTGCGCTATGTT 57.171 36.364 9.73 0.00 0.00 2.71
4127 4271 5.376854 AATTTTCTTGAAGTGCGCTATGT 57.623 34.783 9.73 0.00 0.00 2.29
4128 4272 6.695292 AAAATTTTCTTGAAGTGCGCTATG 57.305 33.333 9.73 0.00 0.00 2.23
4129 4273 7.593825 AGTAAAATTTTCTTGAAGTGCGCTAT 58.406 30.769 9.73 0.00 0.00 2.97
4130 4274 6.966021 AGTAAAATTTTCTTGAAGTGCGCTA 58.034 32.000 9.73 0.00 0.00 4.26
4131 4275 5.831997 AGTAAAATTTTCTTGAAGTGCGCT 58.168 33.333 9.73 0.00 0.00 5.92
4132 4276 6.510746 AAGTAAAATTTTCTTGAAGTGCGC 57.489 33.333 6.72 0.00 0.00 6.09
4133 4277 7.698361 CGTAAGTAAAATTTTCTTGAAGTGCG 58.302 34.615 6.72 2.05 0.00 5.34
4154 4298 5.893687 TCTCATTAACTATTCGCCACGTAA 58.106 37.500 0.00 0.00 0.00 3.18
4155 4299 5.503662 TCTCATTAACTATTCGCCACGTA 57.496 39.130 0.00 0.00 0.00 3.57
4156 4300 4.380841 TCTCATTAACTATTCGCCACGT 57.619 40.909 0.00 0.00 0.00 4.49
4157 4301 4.804139 ACTTCTCATTAACTATTCGCCACG 59.196 41.667 0.00 0.00 0.00 4.94
4158 4302 5.006746 CCACTTCTCATTAACTATTCGCCAC 59.993 44.000 0.00 0.00 0.00 5.01
4159 4303 5.116180 CCACTTCTCATTAACTATTCGCCA 58.884 41.667 0.00 0.00 0.00 5.69
4160 4304 5.116882 ACCACTTCTCATTAACTATTCGCC 58.883 41.667 0.00 0.00 0.00 5.54
4161 4305 7.277098 TGTTACCACTTCTCATTAACTATTCGC 59.723 37.037 0.00 0.00 0.00 4.70
4162 4306 8.697846 TGTTACCACTTCTCATTAACTATTCG 57.302 34.615 0.00 0.00 0.00 3.34
4190 4334 9.649167 GGAAACCGCTATGTTATAGTAACATAT 57.351 33.333 17.90 6.92 40.91 1.78
4191 4335 8.863086 AGGAAACCGCTATGTTATAGTAACATA 58.137 33.333 17.06 17.06 40.87 2.29
4192 4336 7.732996 AGGAAACCGCTATGTTATAGTAACAT 58.267 34.615 16.71 16.71 42.82 2.71
4193 4337 7.116075 AGGAAACCGCTATGTTATAGTAACA 57.884 36.000 5.15 5.15 34.31 2.41
4194 4338 8.571336 TCTAGGAAACCGCTATGTTATAGTAAC 58.429 37.037 0.00 0.00 0.00 2.50
4195 4339 8.696043 TCTAGGAAACCGCTATGTTATAGTAA 57.304 34.615 0.00 0.00 0.00 2.24
4196 4340 8.874744 ATCTAGGAAACCGCTATGTTATAGTA 57.125 34.615 0.00 0.00 0.00 1.82
4197 4341 7.778185 ATCTAGGAAACCGCTATGTTATAGT 57.222 36.000 0.00 0.00 0.00 2.12
4201 4345 9.268268 CATTTTATCTAGGAAACCGCTATGTTA 57.732 33.333 0.00 0.00 0.00 2.41
4202 4346 7.990886 TCATTTTATCTAGGAAACCGCTATGTT 59.009 33.333 0.00 0.00 0.00 2.71
4203 4347 7.506114 TCATTTTATCTAGGAAACCGCTATGT 58.494 34.615 0.00 0.00 0.00 2.29
4204 4348 7.657761 ACTCATTTTATCTAGGAAACCGCTATG 59.342 37.037 0.00 0.00 0.00 2.23
4205 4349 7.736893 ACTCATTTTATCTAGGAAACCGCTAT 58.263 34.615 0.00 0.00 0.00 2.97
4206 4350 7.120923 ACTCATTTTATCTAGGAAACCGCTA 57.879 36.000 0.00 0.00 0.00 4.26
4207 4351 5.990668 ACTCATTTTATCTAGGAAACCGCT 58.009 37.500 0.00 0.00 0.00 5.52
4208 4352 6.679327 AACTCATTTTATCTAGGAAACCGC 57.321 37.500 0.00 0.00 0.00 5.68
4209 4353 9.158233 TGTAAACTCATTTTATCTAGGAAACCG 57.842 33.333 0.00 0.00 32.17 4.44
4258 4402 9.630098 GTGCAAAGTAACATACTAGTAGTGTTA 57.370 33.333 21.42 21.42 38.26 2.41
4259 4403 8.365647 AGTGCAAAGTAACATACTAGTAGTGTT 58.634 33.333 22.71 22.71 38.26 3.32
4260 4404 7.893658 AGTGCAAAGTAACATACTAGTAGTGT 58.106 34.615 13.29 3.10 38.26 3.55
4265 4409 8.198109 CCTCATAGTGCAAAGTAACATACTAGT 58.802 37.037 0.00 0.00 38.26 2.57
4266 4410 8.414003 TCCTCATAGTGCAAAGTAACATACTAG 58.586 37.037 0.00 0.00 38.26 2.57
4267 4411 8.301252 TCCTCATAGTGCAAAGTAACATACTA 57.699 34.615 0.00 0.00 38.26 1.82
4268 4412 7.182817 TCCTCATAGTGCAAAGTAACATACT 57.817 36.000 0.00 0.00 41.73 2.12
4269 4413 9.197694 CTATCCTCATAGTGCAAAGTAACATAC 57.802 37.037 0.00 0.00 0.00 2.39
4270 4414 8.924303 ACTATCCTCATAGTGCAAAGTAACATA 58.076 33.333 0.00 0.00 43.21 2.29
4271 4415 7.796054 ACTATCCTCATAGTGCAAAGTAACAT 58.204 34.615 0.00 0.00 43.21 2.71
4272 4416 7.182817 ACTATCCTCATAGTGCAAAGTAACA 57.817 36.000 0.00 0.00 43.21 2.41
4273 4417 9.032420 GTTACTATCCTCATAGTGCAAAGTAAC 57.968 37.037 5.12 0.00 44.33 2.50
4274 4418 8.978472 AGTTACTATCCTCATAGTGCAAAGTAA 58.022 33.333 5.12 0.00 44.33 2.24
4275 4419 8.534954 AGTTACTATCCTCATAGTGCAAAGTA 57.465 34.615 5.12 0.00 44.33 2.24
4276 4420 7.425224 AGTTACTATCCTCATAGTGCAAAGT 57.575 36.000 5.12 0.00 44.33 2.66
4277 4421 7.225538 CCAAGTTACTATCCTCATAGTGCAAAG 59.774 40.741 5.12 0.00 44.33 2.77
4278 4422 7.047891 CCAAGTTACTATCCTCATAGTGCAAA 58.952 38.462 5.12 0.00 44.33 3.68
4279 4423 6.382859 TCCAAGTTACTATCCTCATAGTGCAA 59.617 38.462 5.12 0.00 44.33 4.08
4280 4424 5.897250 TCCAAGTTACTATCCTCATAGTGCA 59.103 40.000 5.12 0.00 44.33 4.57
4281 4425 6.041069 AGTCCAAGTTACTATCCTCATAGTGC 59.959 42.308 5.12 0.00 44.33 4.40
4282 4426 7.589958 AGTCCAAGTTACTATCCTCATAGTG 57.410 40.000 5.12 0.00 44.33 2.74
4283 4427 9.884814 ATTAGTCCAAGTTACTATCCTCATAGT 57.115 33.333 0.56 0.56 46.06 2.12
4285 4429 9.656323 ACATTAGTCCAAGTTACTATCCTCATA 57.344 33.333 0.00 0.00 29.86 2.15
4286 4430 8.554490 ACATTAGTCCAAGTTACTATCCTCAT 57.446 34.615 0.00 0.00 29.86 2.90
4287 4431 7.618117 TGACATTAGTCCAAGTTACTATCCTCA 59.382 37.037 0.00 0.00 44.33 3.86
4288 4432 8.008513 TGACATTAGTCCAAGTTACTATCCTC 57.991 38.462 0.00 0.00 44.33 3.71
4289 4433 7.973048 TGACATTAGTCCAAGTTACTATCCT 57.027 36.000 0.00 0.00 44.33 3.24
4290 4434 9.694137 GTATGACATTAGTCCAAGTTACTATCC 57.306 37.037 0.00 0.00 44.33 2.59
4291 4435 9.395707 CGTATGACATTAGTCCAAGTTACTATC 57.604 37.037 0.00 0.00 44.33 2.08
4292 4436 7.866393 GCGTATGACATTAGTCCAAGTTACTAT 59.134 37.037 0.00 0.00 44.33 2.12
4293 4437 7.148035 TGCGTATGACATTAGTCCAAGTTACTA 60.148 37.037 0.00 0.00 44.33 1.82
4294 4438 6.040878 GCGTATGACATTAGTCCAAGTTACT 58.959 40.000 0.00 0.00 44.33 2.24
4295 4439 5.808540 TGCGTATGACATTAGTCCAAGTTAC 59.191 40.000 0.00 0.00 44.33 2.50
4296 4440 5.968254 TGCGTATGACATTAGTCCAAGTTA 58.032 37.500 0.00 0.00 44.33 2.24
4297 4441 4.827692 TGCGTATGACATTAGTCCAAGTT 58.172 39.130 0.00 0.00 44.33 2.66
4298 4442 4.465632 TGCGTATGACATTAGTCCAAGT 57.534 40.909 0.00 0.00 44.33 3.16
4299 4443 5.049828 TCATGCGTATGACATTAGTCCAAG 58.950 41.667 12.50 0.00 44.33 3.61
4300 4444 5.017294 TCATGCGTATGACATTAGTCCAA 57.983 39.130 12.50 0.00 44.33 3.53
4301 4445 4.664150 TCATGCGTATGACATTAGTCCA 57.336 40.909 12.50 0.00 44.33 4.02
4302 4446 6.390721 AGTATCATGCGTATGACATTAGTCC 58.609 40.000 18.78 0.00 45.54 3.85
4303 4447 8.237949 ACTAGTATCATGCGTATGACATTAGTC 58.762 37.037 19.31 7.02 45.54 2.59
4304 4448 8.112016 ACTAGTATCATGCGTATGACATTAGT 57.888 34.615 19.31 19.31 45.54 2.24
4309 4453 9.227777 ACTTATACTAGTATCATGCGTATGACA 57.772 33.333 18.78 3.97 45.54 3.58
4315 4459 8.728833 GGAGTAACTTATACTAGTATCATGCGT 58.271 37.037 18.68 7.46 0.00 5.24
4316 4460 8.948145 AGGAGTAACTTATACTAGTATCATGCG 58.052 37.037 18.68 6.90 0.00 4.73
4329 4473 9.075678 GCTGGTTATAGTGAGGAGTAACTTATA 57.924 37.037 0.00 0.00 0.00 0.98
4330 4474 7.015389 GGCTGGTTATAGTGAGGAGTAACTTAT 59.985 40.741 0.00 0.00 0.00 1.73
4331 4475 6.323225 GGCTGGTTATAGTGAGGAGTAACTTA 59.677 42.308 0.00 0.00 0.00 2.24
4332 4476 5.128991 GGCTGGTTATAGTGAGGAGTAACTT 59.871 44.000 0.00 0.00 0.00 2.66
4333 4477 4.650131 GGCTGGTTATAGTGAGGAGTAACT 59.350 45.833 0.00 0.00 0.00 2.24
4334 4478 4.650131 AGGCTGGTTATAGTGAGGAGTAAC 59.350 45.833 0.00 0.00 0.00 2.50
4335 4479 4.880164 AGGCTGGTTATAGTGAGGAGTAA 58.120 43.478 0.00 0.00 0.00 2.24
4336 4480 4.537945 AGGCTGGTTATAGTGAGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
4337 4481 3.406512 AGGCTGGTTATAGTGAGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
4338 4482 4.282195 CCTAAGGCTGGTTATAGTGAGGAG 59.718 50.000 0.00 0.00 0.00 3.69
4339 4483 4.078805 TCCTAAGGCTGGTTATAGTGAGGA 60.079 45.833 0.00 0.00 0.00 3.71
4340 4484 4.223953 TCCTAAGGCTGGTTATAGTGAGG 58.776 47.826 0.00 0.00 0.00 3.86
4341 4485 5.602628 GTTCCTAAGGCTGGTTATAGTGAG 58.397 45.833 0.00 0.00 0.00 3.51
4342 4486 4.098960 CGTTCCTAAGGCTGGTTATAGTGA 59.901 45.833 0.00 0.00 0.00 3.41
4343 4487 4.369182 CGTTCCTAAGGCTGGTTATAGTG 58.631 47.826 0.00 0.00 0.00 2.74
4344 4488 3.181468 GCGTTCCTAAGGCTGGTTATAGT 60.181 47.826 0.00 0.00 39.10 2.12
4345 4489 3.181469 TGCGTTCCTAAGGCTGGTTATAG 60.181 47.826 5.99 0.00 42.45 1.31
4346 4490 2.767394 TGCGTTCCTAAGGCTGGTTATA 59.233 45.455 5.99 0.00 42.45 0.98
4347 4491 1.557832 TGCGTTCCTAAGGCTGGTTAT 59.442 47.619 5.99 0.00 42.45 1.89
4348 4492 0.978151 TGCGTTCCTAAGGCTGGTTA 59.022 50.000 5.99 0.00 42.45 2.85
4349 4493 0.328258 ATGCGTTCCTAAGGCTGGTT 59.672 50.000 5.99 0.00 42.45 3.67
4350 4494 0.392998 CATGCGTTCCTAAGGCTGGT 60.393 55.000 5.99 0.00 42.45 4.00
4351 4495 0.107703 TCATGCGTTCCTAAGGCTGG 60.108 55.000 5.99 0.00 42.45 4.85
4352 4496 1.737838 TTCATGCGTTCCTAAGGCTG 58.262 50.000 5.99 2.89 42.45 4.85
4353 4497 2.292267 CATTCATGCGTTCCTAAGGCT 58.708 47.619 5.99 0.00 42.45 4.58
4354 4498 2.017049 ACATTCATGCGTTCCTAAGGC 58.983 47.619 0.00 0.00 42.32 4.35
4355 4499 4.273480 CCTAACATTCATGCGTTCCTAAGG 59.727 45.833 0.00 0.00 0.00 2.69
4356 4500 5.116180 TCCTAACATTCATGCGTTCCTAAG 58.884 41.667 0.00 0.00 0.00 2.18
4357 4501 5.092554 TCCTAACATTCATGCGTTCCTAA 57.907 39.130 0.00 0.00 0.00 2.69
4358 4502 4.746535 TCCTAACATTCATGCGTTCCTA 57.253 40.909 0.00 0.00 0.00 2.94
4359 4503 3.627395 TCCTAACATTCATGCGTTCCT 57.373 42.857 0.00 0.00 0.00 3.36
4360 4504 4.695217 TTTCCTAACATTCATGCGTTCC 57.305 40.909 0.00 0.00 0.00 3.62
4361 4505 8.682128 TTATTTTTCCTAACATTCATGCGTTC 57.318 30.769 0.00 0.00 0.00 3.95
4362 4506 8.519526 TCTTATTTTTCCTAACATTCATGCGTT 58.480 29.630 0.00 0.00 0.00 4.84
4363 4507 8.050778 TCTTATTTTTCCTAACATTCATGCGT 57.949 30.769 0.00 0.00 0.00 5.24
4364 4508 8.909708 TTCTTATTTTTCCTAACATTCATGCG 57.090 30.769 0.00 0.00 0.00 4.73
4380 4524 8.947115 CCGAGTGTTTCTTCCTATTCTTATTTT 58.053 33.333 0.00 0.00 0.00 1.82
4381 4525 8.319146 TCCGAGTGTTTCTTCCTATTCTTATTT 58.681 33.333 0.00 0.00 0.00 1.40
4382 4526 7.848128 TCCGAGTGTTTCTTCCTATTCTTATT 58.152 34.615 0.00 0.00 0.00 1.40
4383 4527 7.419711 TCCGAGTGTTTCTTCCTATTCTTAT 57.580 36.000 0.00 0.00 0.00 1.73
4384 4528 6.845758 TCCGAGTGTTTCTTCCTATTCTTA 57.154 37.500 0.00 0.00 0.00 2.10
4385 4529 5.740290 TCCGAGTGTTTCTTCCTATTCTT 57.260 39.130 0.00 0.00 0.00 2.52
4386 4530 5.740290 TTCCGAGTGTTTCTTCCTATTCT 57.260 39.130 0.00 0.00 0.00 2.40
4387 4531 7.980099 TCTTATTCCGAGTGTTTCTTCCTATTC 59.020 37.037 0.00 0.00 0.00 1.75
4388 4532 7.848128 TCTTATTCCGAGTGTTTCTTCCTATT 58.152 34.615 0.00 0.00 0.00 1.73
4389 4533 7.419711 TCTTATTCCGAGTGTTTCTTCCTAT 57.580 36.000 0.00 0.00 0.00 2.57
4390 4534 6.845758 TCTTATTCCGAGTGTTTCTTCCTA 57.154 37.500 0.00 0.00 0.00 2.94
4391 4535 5.740290 TCTTATTCCGAGTGTTTCTTCCT 57.260 39.130 0.00 0.00 0.00 3.36
4392 4536 6.986904 ATTCTTATTCCGAGTGTTTCTTCC 57.013 37.500 0.00 0.00 0.00 3.46
4393 4537 8.705048 ACTATTCTTATTCCGAGTGTTTCTTC 57.295 34.615 0.00 0.00 0.00 2.87
4454 4598 1.206371 GGGCCGTTAGAGTTGCTCTAA 59.794 52.381 12.89 12.89 46.70 2.10
4455 4599 0.822164 GGGCCGTTAGAGTTGCTCTA 59.178 55.000 0.00 2.07 41.50 2.43
4456 4600 1.597461 GGGCCGTTAGAGTTGCTCT 59.403 57.895 0.00 4.02 43.83 4.09
4457 4601 1.810030 CGGGCCGTTAGAGTTGCTC 60.810 63.158 19.97 0.00 0.00 4.26
4458 4602 2.264794 CGGGCCGTTAGAGTTGCT 59.735 61.111 19.97 0.00 0.00 3.91
4459 4603 2.098831 GTCGGGCCGTTAGAGTTGC 61.099 63.158 27.32 2.50 0.00 4.17
4460 4604 0.458025 GAGTCGGGCCGTTAGAGTTG 60.458 60.000 27.32 0.00 0.00 3.16
4461 4605 0.896940 TGAGTCGGGCCGTTAGAGTT 60.897 55.000 27.32 4.58 0.00 3.01
4462 4606 0.896940 TTGAGTCGGGCCGTTAGAGT 60.897 55.000 27.32 9.38 0.00 3.24
4463 4607 0.245539 TTTGAGTCGGGCCGTTAGAG 59.754 55.000 27.32 0.00 0.00 2.43
4464 4608 0.037975 GTTTGAGTCGGGCCGTTAGA 60.038 55.000 27.32 2.65 0.00 2.10
4465 4609 1.349259 CGTTTGAGTCGGGCCGTTAG 61.349 60.000 27.32 6.19 0.00 2.34
4466 4610 1.373246 CGTTTGAGTCGGGCCGTTA 60.373 57.895 27.32 4.04 0.00 3.18
4467 4611 2.663852 CGTTTGAGTCGGGCCGTT 60.664 61.111 27.32 15.79 0.00 4.44
4468 4612 4.675029 CCGTTTGAGTCGGGCCGT 62.675 66.667 27.32 7.44 43.68 5.68
4469 4613 4.367023 TCCGTTTGAGTCGGGCCG 62.367 66.667 22.51 22.51 46.82 6.13
4470 4614 2.741211 GTCCGTTTGAGTCGGGCC 60.741 66.667 0.00 0.00 45.74 5.80
4472 4616 1.731969 GTCGTCCGTTTGAGTCGGG 60.732 63.158 4.58 0.00 46.82 5.14
4474 4618 2.704193 GCGTCGTCCGTTTGAGTCG 61.704 63.158 0.00 0.00 39.32 4.18
4475 4619 0.938168 AAGCGTCGTCCGTTTGAGTC 60.938 55.000 0.00 0.00 38.64 3.36
4476 4620 0.529119 AAAGCGTCGTCCGTTTGAGT 60.529 50.000 0.00 0.00 39.19 3.41
4477 4621 0.580104 AAAAGCGTCGTCCGTTTGAG 59.420 50.000 0.00 0.00 39.19 3.02
4478 4622 0.302288 CAAAAGCGTCGTCCGTTTGA 59.698 50.000 5.71 0.00 39.19 2.69
4479 4623 0.027063 ACAAAAGCGTCGTCCGTTTG 59.973 50.000 8.77 8.77 39.19 2.93
4480 4624 0.302589 GACAAAAGCGTCGTCCGTTT 59.697 50.000 0.00 0.00 42.10 3.60
4481 4625 1.493134 GGACAAAAGCGTCGTCCGTT 61.493 55.000 5.63 0.00 39.86 4.44
4482 4626 1.952635 GGACAAAAGCGTCGTCCGT 60.953 57.895 5.63 0.00 39.86 4.69
4483 4627 2.851104 GGACAAAAGCGTCGTCCG 59.149 61.111 5.63 0.00 39.86 4.79
4484 4628 1.493134 AACGGACAAAAGCGTCGTCC 61.493 55.000 10.10 10.10 44.79 4.79
4485 4629 0.302589 AAACGGACAAAAGCGTCGTC 59.697 50.000 0.00 0.00 36.73 4.20
4486 4630 0.728542 AAAACGGACAAAAGCGTCGT 59.271 45.000 0.00 0.00 36.73 4.34
4487 4631 1.817609 AAAAACGGACAAAAGCGTCG 58.182 45.000 0.00 0.00 36.73 5.12
4521 4665 4.736896 GACTGTGTCCGTCGGGCC 62.737 72.222 14.50 5.38 0.00 5.80
4522 4666 3.681835 AGACTGTGTCCGTCGGGC 61.682 66.667 9.51 9.51 36.53 6.13
4523 4667 2.258591 CAGACTGTGTCCGTCGGG 59.741 66.667 12.29 0.00 36.53 5.14
4524 4668 1.371758 CACAGACTGTGTCCGTCGG 60.372 63.158 24.73 4.39 43.08 4.79
4525 4669 4.228451 CACAGACTGTGTCCGTCG 57.772 61.111 24.73 0.06 43.08 5.12
4533 4677 0.539986 ACGACCCAAACACAGACTGT 59.460 50.000 1.07 1.07 32.89 3.55
4534 4678 1.217882 GACGACCCAAACACAGACTG 58.782 55.000 0.00 0.00 0.00 3.51
4535 4679 0.249322 CGACGACCCAAACACAGACT 60.249 55.000 0.00 0.00 0.00 3.24
4536 4680 1.828331 GCGACGACCCAAACACAGAC 61.828 60.000 0.00 0.00 0.00 3.51
4537 4681 1.593209 GCGACGACCCAAACACAGA 60.593 57.895 0.00 0.00 0.00 3.41
4538 4682 2.935955 GCGACGACCCAAACACAG 59.064 61.111 0.00 0.00 0.00 3.66
4539 4683 2.962786 CGCGACGACCCAAACACA 60.963 61.111 0.00 0.00 0.00 3.72
4540 4684 2.654912 CTCGCGACGACCCAAACAC 61.655 63.158 3.71 0.00 0.00 3.32
4541 4685 2.355363 CTCGCGACGACCCAAACA 60.355 61.111 3.71 0.00 0.00 2.83
4542 4686 3.774702 GCTCGCGACGACCCAAAC 61.775 66.667 3.71 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.