Multiple sequence alignment - TraesCS3A01G425000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G425000 chr3A 100.000 2720 0 0 1 2720 667495939 667493220 0.000000e+00 5024.0
1 TraesCS3A01G425000 chr3D 94.056 1430 50 14 585 2005 532205893 532204490 0.000000e+00 2137.0
2 TraesCS3A01G425000 chr3D 90.173 346 30 4 4 348 532234892 532234550 5.340000e-122 448.0
3 TraesCS3A01G425000 chr3D 90.728 302 10 7 2434 2720 532198485 532198187 1.180000e-103 387.0
4 TraesCS3A01G425000 chr3D 83.077 390 42 18 58 440 268949532 268949160 1.560000e-87 333.0
5 TraesCS3A01G425000 chr3D 88.000 275 12 2 1688 1941 532199203 532198929 3.400000e-79 305.0
6 TraesCS3A01G425000 chr3D 89.697 165 13 4 2277 2438 532198674 532198511 9.870000e-50 207.0
7 TraesCS3A01G425000 chr3D 84.884 172 20 4 338 505 532206273 532206104 4.660000e-38 169.0
8 TraesCS3A01G425000 chr3D 92.553 94 2 2 499 587 532206022 532205929 2.200000e-26 130.0
9 TraesCS3A01G425000 chr3B 94.252 1183 61 4 593 1775 704479317 704478142 0.000000e+00 1801.0
10 TraesCS3A01G425000 chr3B 96.181 576 19 3 1200 1775 704406969 704406397 0.000000e+00 939.0
11 TraesCS3A01G425000 chr3B 96.277 376 13 1 585 959 704408928 704408553 1.380000e-172 616.0
12 TraesCS3A01G425000 chr3B 82.381 420 62 7 1 412 371250940 371251355 3.330000e-94 355.0
13 TraesCS3A01G425000 chr3B 89.416 274 24 3 9 282 43853434 43853166 9.330000e-90 340.0
14 TraesCS3A01G425000 chr3B 84.138 290 19 20 2434 2720 704465565 704465300 3.480000e-64 255.0
15 TraesCS3A01G425000 chr3B 86.290 248 15 5 1771 2005 704406357 704406116 4.500000e-63 252.0
16 TraesCS3A01G425000 chr3B 91.525 177 10 1 1834 2005 704466052 704465876 3.500000e-59 239.0
17 TraesCS3A01G425000 chr3B 82.746 284 24 17 2434 2715 704405812 704405552 2.110000e-56 230.0
18 TraesCS3A01G425000 chr3B 90.323 93 3 2 499 587 704409054 704408964 1.710000e-22 117.0
19 TraesCS3A01G425000 chr3B 77.273 198 25 10 311 505 704409316 704409136 6.200000e-17 99.0
20 TraesCS3A01G425000 chr3B 97.368 38 1 0 2534 2571 704405686 704405649 6.290000e-07 65.8
21 TraesCS3A01G425000 chr3B 97.368 38 1 0 2534 2571 704465440 704465403 6.290000e-07 65.8
22 TraesCS3A01G425000 chr2B 89.280 1194 95 17 586 1755 793506330 793505146 0.000000e+00 1465.0
23 TraesCS3A01G425000 chr2B 86.007 879 111 10 785 1657 793518120 793517248 0.000000e+00 931.0
24 TraesCS3A01G425000 chr2B 90.811 185 14 3 2004 2187 767124966 767124784 7.520000e-61 244.0
25 TraesCS3A01G425000 chr2A 88.294 1196 109 15 586 1766 768267132 768265953 0.000000e+00 1404.0
26 TraesCS3A01G425000 chr2A 86.833 881 108 7 782 1658 768257033 768257909 0.000000e+00 977.0
27 TraesCS3A01G425000 chr2D 88.164 1149 102 18 585 1721 643435048 643436174 0.000000e+00 1338.0
28 TraesCS3A01G425000 chr2D 86.750 883 111 6 782 1661 643330398 643331277 0.000000e+00 977.0
29 TraesCS3A01G425000 chr7A 84.706 425 53 11 2 421 679742243 679742660 5.420000e-112 414.0
30 TraesCS3A01G425000 chr7A 82.940 381 60 4 6 384 506874481 506874104 3.350000e-89 339.0
31 TraesCS3A01G425000 chr7A 80.108 186 33 3 2009 2192 13184449 13184266 4.720000e-28 135.0
32 TraesCS3A01G425000 chr7A 80.447 179 31 3 2009 2185 133627892 133627716 1.700000e-27 134.0
33 TraesCS3A01G425000 chr7A 92.593 54 4 0 2005 2058 694115605 694115658 8.070000e-11 78.7
34 TraesCS3A01G425000 chr4D 87.088 364 30 11 1 362 478034762 478034414 1.960000e-106 396.0
35 TraesCS3A01G425000 chr4D 81.217 378 63 6 38 412 421510580 421510208 5.690000e-77 298.0
36 TraesCS3A01G425000 chr7D 82.927 410 51 12 4 411 205727604 205727212 4.310000e-93 351.0
37 TraesCS3A01G425000 chr4A 92.308 182 12 1 2007 2188 47388257 47388436 9.660000e-65 257.0
38 TraesCS3A01G425000 chr5B 80.328 183 32 3 2009 2189 674428227 674428407 4.720000e-28 135.0
39 TraesCS3A01G425000 chr5A 79.191 173 30 5 2009 2178 514187086 514186917 6.150000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G425000 chr3A 667493220 667495939 2719 True 5024.000000 5024 100.000000 1 2720 1 chr3A.!!$R1 2719
1 TraesCS3A01G425000 chr3D 532204490 532206273 1783 True 812.000000 2137 90.497667 338 2005 3 chr3D.!!$R4 1667
2 TraesCS3A01G425000 chr3D 532198187 532199203 1016 True 299.666667 387 89.475000 1688 2720 3 chr3D.!!$R3 1032
3 TraesCS3A01G425000 chr3B 704478142 704479317 1175 True 1801.000000 1801 94.252000 593 1775 1 chr3B.!!$R2 1182
4 TraesCS3A01G425000 chr3B 704405552 704409316 3764 True 331.257143 939 89.494000 311 2715 7 chr3B.!!$R3 2404
5 TraesCS3A01G425000 chr2B 793505146 793506330 1184 True 1465.000000 1465 89.280000 586 1755 1 chr2B.!!$R2 1169
6 TraesCS3A01G425000 chr2B 793517248 793518120 872 True 931.000000 931 86.007000 785 1657 1 chr2B.!!$R3 872
7 TraesCS3A01G425000 chr2A 768265953 768267132 1179 True 1404.000000 1404 88.294000 586 1766 1 chr2A.!!$R1 1180
8 TraesCS3A01G425000 chr2A 768257033 768257909 876 False 977.000000 977 86.833000 782 1658 1 chr2A.!!$F1 876
9 TraesCS3A01G425000 chr2D 643435048 643436174 1126 False 1338.000000 1338 88.164000 585 1721 1 chr2D.!!$F2 1136
10 TraesCS3A01G425000 chr2D 643330398 643331277 879 False 977.000000 977 86.750000 782 1661 1 chr2D.!!$F1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.107017 ATCAATGGAAGGCTGACCGG 60.107 55.0 0.0 0.0 42.76 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 3655 0.107508 AGCCGTACGTAGGTCTAGCA 60.108 55.0 15.21 0.0 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.394712 CAGCGGCGAGGAAGGGTT 62.395 66.667 12.98 0.00 0.00 4.11
34 35 4.394712 AGCGGCGAGGAAGGGTTG 62.395 66.667 12.98 0.00 0.00 3.77
37 38 4.035102 GGCGAGGAAGGGTTGGCT 62.035 66.667 0.00 0.00 0.00 4.75
38 39 2.034221 GCGAGGAAGGGTTGGCTT 59.966 61.111 0.00 0.00 0.00 4.35
39 40 1.603739 GCGAGGAAGGGTTGGCTTT 60.604 57.895 0.00 0.00 0.00 3.51
40 41 1.179174 GCGAGGAAGGGTTGGCTTTT 61.179 55.000 0.00 0.00 0.00 2.27
41 42 1.884928 GCGAGGAAGGGTTGGCTTTTA 60.885 52.381 0.00 0.00 0.00 1.52
42 43 2.723273 CGAGGAAGGGTTGGCTTTTAT 58.277 47.619 0.00 0.00 0.00 1.40
43 44 3.881220 CGAGGAAGGGTTGGCTTTTATA 58.119 45.455 0.00 0.00 0.00 0.98
44 45 3.877508 CGAGGAAGGGTTGGCTTTTATAG 59.122 47.826 0.00 0.00 0.00 1.31
54 55 0.582005 GCTTTTATAGCGGCGAGTGG 59.418 55.000 12.98 0.00 40.71 4.00
55 56 1.217882 CTTTTATAGCGGCGAGTGGG 58.782 55.000 12.98 0.00 0.00 4.61
56 57 0.812412 TTTTATAGCGGCGAGTGGGC 60.812 55.000 12.98 0.00 37.98 5.36
79 80 3.857854 GCGAGCGGCATCAGTGTG 61.858 66.667 1.45 0.00 42.87 3.82
80 81 3.190849 CGAGCGGCATCAGTGTGG 61.191 66.667 1.45 0.00 0.00 4.17
81 82 2.265739 GAGCGGCATCAGTGTGGA 59.734 61.111 1.45 0.00 0.00 4.02
82 83 2.046892 AGCGGCATCAGTGTGGAC 60.047 61.111 1.45 0.00 0.00 4.02
83 84 3.490759 GCGGCATCAGTGTGGACG 61.491 66.667 7.52 7.52 0.00 4.79
84 85 3.490759 CGGCATCAGTGTGGACGC 61.491 66.667 0.00 0.00 0.00 5.19
85 86 3.490759 GGCATCAGTGTGGACGCG 61.491 66.667 3.53 3.53 0.00 6.01
86 87 2.738521 GCATCAGTGTGGACGCGT 60.739 61.111 13.85 13.85 0.00 6.01
87 88 3.015293 GCATCAGTGTGGACGCGTG 62.015 63.158 20.70 0.00 0.00 5.34
88 89 2.048222 ATCAGTGTGGACGCGTGG 60.048 61.111 20.70 0.00 0.00 4.94
89 90 2.867855 ATCAGTGTGGACGCGTGGT 61.868 57.895 20.70 0.00 0.00 4.16
90 91 3.337889 CAGTGTGGACGCGTGGTG 61.338 66.667 20.70 0.01 0.00 4.17
91 92 4.602259 AGTGTGGACGCGTGGTGG 62.602 66.667 20.70 0.00 0.00 4.61
129 130 3.414700 GGTGGCGCGTCTTCACTG 61.415 66.667 13.81 0.00 0.00 3.66
130 131 4.077188 GTGGCGCGTCTTCACTGC 62.077 66.667 13.81 0.00 0.00 4.40
147 148 3.202001 CGCCGCCCGTGAATCAAT 61.202 61.111 0.00 0.00 0.00 2.57
148 149 2.408835 GCCGCCCGTGAATCAATG 59.591 61.111 0.00 0.00 0.00 2.82
149 150 3.110139 CCGCCCGTGAATCAATGG 58.890 61.111 0.00 0.00 0.00 3.16
150 151 1.451207 CCGCCCGTGAATCAATGGA 60.451 57.895 4.53 0.00 0.00 3.41
151 152 1.029408 CCGCCCGTGAATCAATGGAA 61.029 55.000 4.53 0.00 0.00 3.53
152 153 0.378257 CGCCCGTGAATCAATGGAAG 59.622 55.000 4.53 0.00 0.00 3.46
153 154 0.740737 GCCCGTGAATCAATGGAAGG 59.259 55.000 4.53 0.00 0.00 3.46
154 155 0.740737 CCCGTGAATCAATGGAAGGC 59.259 55.000 4.53 0.00 0.00 4.35
155 156 1.683011 CCCGTGAATCAATGGAAGGCT 60.683 52.381 4.53 0.00 0.00 4.58
156 157 1.402968 CCGTGAATCAATGGAAGGCTG 59.597 52.381 0.00 0.00 0.00 4.85
157 158 2.358957 CGTGAATCAATGGAAGGCTGA 58.641 47.619 0.00 0.00 0.00 4.26
158 159 2.096496 CGTGAATCAATGGAAGGCTGAC 59.904 50.000 0.00 0.00 0.00 3.51
159 160 2.424956 GTGAATCAATGGAAGGCTGACC 59.575 50.000 4.34 4.34 0.00 4.02
160 161 1.672881 GAATCAATGGAAGGCTGACCG 59.327 52.381 6.53 0.00 42.76 4.79
161 162 0.107017 ATCAATGGAAGGCTGACCGG 60.107 55.000 0.00 0.00 42.76 5.28
162 163 1.002134 CAATGGAAGGCTGACCGGT 60.002 57.895 6.92 6.92 42.76 5.28
163 164 1.002134 AATGGAAGGCTGACCGGTG 60.002 57.895 14.63 0.00 42.76 4.94
164 165 2.484287 AATGGAAGGCTGACCGGTGG 62.484 60.000 14.63 5.68 42.76 4.61
166 167 4.329545 GAAGGCTGACCGGTGGCA 62.330 66.667 24.47 12.64 42.76 4.92
167 168 4.335647 AAGGCTGACCGGTGGCAG 62.336 66.667 24.47 21.00 42.76 4.85
171 172 4.335647 CTGACCGGTGGCAGCCTT 62.336 66.667 14.63 0.00 0.00 4.35
172 173 4.329545 TGACCGGTGGCAGCCTTC 62.330 66.667 14.63 8.10 0.00 3.46
177 178 3.064324 GGTGGCAGCCTTCGCATT 61.064 61.111 14.15 0.00 37.52 3.56
178 179 2.180017 GTGGCAGCCTTCGCATTG 59.820 61.111 14.15 0.00 37.52 2.82
179 180 2.033911 TGGCAGCCTTCGCATTGA 59.966 55.556 14.15 0.00 37.52 2.57
180 181 1.378911 TGGCAGCCTTCGCATTGAT 60.379 52.632 14.15 0.00 37.52 2.57
181 182 0.966875 TGGCAGCCTTCGCATTGATT 60.967 50.000 14.15 0.00 37.52 2.57
182 183 0.248784 GGCAGCCTTCGCATTGATTC 60.249 55.000 3.29 0.00 37.52 2.52
183 184 0.248784 GCAGCCTTCGCATTGATTCC 60.249 55.000 0.00 0.00 37.52 3.01
184 185 1.386533 CAGCCTTCGCATTGATTCCT 58.613 50.000 0.00 0.00 37.52 3.36
185 186 1.065102 CAGCCTTCGCATTGATTCCTG 59.935 52.381 0.00 0.00 37.52 3.86
186 187 1.098050 GCCTTCGCATTGATTCCTGT 58.902 50.000 0.00 0.00 34.03 4.00
187 188 1.202222 GCCTTCGCATTGATTCCTGTG 60.202 52.381 0.00 0.00 34.03 3.66
188 189 1.402968 CCTTCGCATTGATTCCTGTGG 59.597 52.381 0.00 0.00 0.00 4.17
189 190 1.402968 CTTCGCATTGATTCCTGTGGG 59.597 52.381 0.00 0.00 0.00 4.61
190 191 0.617935 TCGCATTGATTCCTGTGGGA 59.382 50.000 0.00 0.00 40.36 4.37
204 205 2.582436 GGGAAACCGAGGCGATGA 59.418 61.111 0.00 0.00 43.64 2.92
205 206 1.146263 GGGAAACCGAGGCGATGAT 59.854 57.895 0.00 0.00 43.64 2.45
206 207 1.160329 GGGAAACCGAGGCGATGATG 61.160 60.000 0.00 0.00 43.64 3.07
207 208 0.179084 GGAAACCGAGGCGATGATGA 60.179 55.000 0.00 0.00 0.00 2.92
208 209 0.931005 GAAACCGAGGCGATGATGAC 59.069 55.000 0.00 0.00 0.00 3.06
209 210 0.806102 AAACCGAGGCGATGATGACG 60.806 55.000 0.00 0.00 0.00 4.35
210 211 1.663379 AACCGAGGCGATGATGACGA 61.663 55.000 0.00 0.00 0.00 4.20
211 212 1.658717 CCGAGGCGATGATGACGAC 60.659 63.158 0.00 0.00 39.24 4.34
212 213 2.006062 CGAGGCGATGATGACGACG 61.006 63.158 0.00 0.00 44.04 5.12
213 214 1.355563 GAGGCGATGATGACGACGA 59.644 57.895 0.00 0.00 44.04 4.20
214 215 0.248498 GAGGCGATGATGACGACGAA 60.248 55.000 0.00 0.00 44.04 3.85
215 216 0.248661 AGGCGATGATGACGACGAAG 60.249 55.000 0.00 0.00 44.04 3.79
216 217 0.248498 GGCGATGATGACGACGAAGA 60.248 55.000 0.00 0.00 0.00 2.87
217 218 1.600663 GGCGATGATGACGACGAAGAT 60.601 52.381 0.00 0.00 0.00 2.40
218 219 2.120232 GCGATGATGACGACGAAGATT 58.880 47.619 0.00 0.00 0.00 2.40
219 220 2.152112 GCGATGATGACGACGAAGATTC 59.848 50.000 0.00 0.00 0.00 2.52
220 221 3.622828 CGATGATGACGACGAAGATTCT 58.377 45.455 0.00 0.00 0.00 2.40
221 222 3.661728 CGATGATGACGACGAAGATTCTC 59.338 47.826 0.00 0.00 0.00 2.87
222 223 3.052940 TGATGACGACGAAGATTCTCG 57.947 47.619 0.00 10.70 44.50 4.04
223 224 2.223272 TGATGACGACGAAGATTCTCGG 60.223 50.000 0.00 0.00 43.22 4.63
224 225 0.179171 TGACGACGAAGATTCTCGGC 60.179 55.000 0.00 12.85 43.71 5.54
228 229 1.124462 GACGAAGATTCTCGGCATCG 58.876 55.000 3.74 3.74 46.51 3.84
229 230 0.872021 ACGAAGATTCTCGGCATCGC 60.872 55.000 4.96 0.00 43.22 4.58
230 231 1.552348 CGAAGATTCTCGGCATCGCC 61.552 60.000 0.00 0.00 46.75 5.54
240 241 4.819761 GCATCGCCCAGTCGCTGA 62.820 66.667 8.20 0.00 32.44 4.26
241 242 2.887568 CATCGCCCAGTCGCTGAC 60.888 66.667 8.20 1.15 32.44 3.51
242 243 3.071206 ATCGCCCAGTCGCTGACT 61.071 61.111 8.20 5.54 44.44 3.41
243 244 3.069980 ATCGCCCAGTCGCTGACTC 62.070 63.158 8.02 0.00 41.37 3.36
245 246 4.803426 GCCCAGTCGCTGACTCGG 62.803 72.222 14.61 14.61 41.37 4.63
246 247 4.803426 CCCAGTCGCTGACTCGGC 62.803 72.222 8.76 0.00 41.37 5.54
254 255 4.436998 CTGACTCGGCGGGTCCAC 62.437 72.222 34.54 13.85 33.22 4.02
262 263 4.660938 GCGGGTCCACCAGGCTTT 62.661 66.667 0.00 0.00 40.22 3.51
263 264 2.359975 CGGGTCCACCAGGCTTTC 60.360 66.667 0.00 0.00 40.22 2.62
264 265 2.359975 GGGTCCACCAGGCTTTCG 60.360 66.667 0.00 0.00 39.85 3.46
265 266 3.056328 GGTCCACCAGGCTTTCGC 61.056 66.667 0.00 0.00 35.64 4.70
266 267 3.423154 GTCCACCAGGCTTTCGCG 61.423 66.667 0.00 0.00 36.88 5.87
276 277 2.516486 GCTTTCGCGCCAAAAATGT 58.484 47.368 0.00 0.00 0.00 2.71
277 278 0.858583 GCTTTCGCGCCAAAAATGTT 59.141 45.000 0.00 0.00 0.00 2.71
278 279 1.260297 GCTTTCGCGCCAAAAATGTTT 59.740 42.857 0.00 0.00 0.00 2.83
279 280 2.659023 GCTTTCGCGCCAAAAATGTTTC 60.659 45.455 0.00 0.00 0.00 2.78
280 281 1.492720 TTCGCGCCAAAAATGTTTCC 58.507 45.000 0.00 0.00 0.00 3.13
281 282 0.319125 TCGCGCCAAAAATGTTTCCC 60.319 50.000 0.00 0.00 0.00 3.97
282 283 1.288419 CGCGCCAAAAATGTTTCCCC 61.288 55.000 0.00 0.00 0.00 4.81
283 284 0.953471 GCGCCAAAAATGTTTCCCCC 60.953 55.000 0.00 0.00 0.00 5.40
284 285 0.669012 CGCCAAAAATGTTTCCCCCG 60.669 55.000 0.00 0.00 0.00 5.73
285 286 0.321210 GCCAAAAATGTTTCCCCCGG 60.321 55.000 0.00 0.00 0.00 5.73
286 287 0.321210 CCAAAAATGTTTCCCCCGGC 60.321 55.000 0.00 0.00 0.00 6.13
287 288 0.669012 CAAAAATGTTTCCCCCGGCG 60.669 55.000 0.00 0.00 0.00 6.46
288 289 1.116536 AAAAATGTTTCCCCCGGCGT 61.117 50.000 6.01 0.00 0.00 5.68
289 290 1.529152 AAAATGTTTCCCCCGGCGTC 61.529 55.000 6.01 0.00 0.00 5.19
290 291 2.420466 AAATGTTTCCCCCGGCGTCT 62.420 55.000 6.01 0.00 0.00 4.18
291 292 2.814913 AATGTTTCCCCCGGCGTCTC 62.815 60.000 6.01 0.00 0.00 3.36
309 310 4.681978 GAGTGCGCCGGGTTCTGT 62.682 66.667 4.18 0.00 0.00 3.41
310 311 4.681978 AGTGCGCCGGGTTCTGTC 62.682 66.667 4.18 0.00 0.00 3.51
311 312 4.681978 GTGCGCCGGGTTCTGTCT 62.682 66.667 4.18 0.00 0.00 3.41
312 313 4.680237 TGCGCCGGGTTCTGTCTG 62.680 66.667 4.18 0.00 0.00 3.51
313 314 4.373116 GCGCCGGGTTCTGTCTGA 62.373 66.667 2.18 0.00 0.00 3.27
314 315 2.342279 CGCCGGGTTCTGTCTGAA 59.658 61.111 2.18 0.00 0.00 3.02
315 316 1.079127 CGCCGGGTTCTGTCTGAAT 60.079 57.895 2.18 0.00 36.99 2.57
316 317 1.084370 CGCCGGGTTCTGTCTGAATC 61.084 60.000 2.18 0.00 36.99 2.52
326 327 3.449227 TCTGAATCCGTCGGCGCT 61.449 61.111 2.51 0.00 36.67 5.92
335 336 1.082117 CCGTCGGCGCTAATTTCAGT 61.082 55.000 2.51 0.00 36.67 3.41
341 342 2.933906 CGGCGCTAATTTCAGTCCTAAA 59.066 45.455 7.64 0.00 0.00 1.85
343 344 3.687698 GGCGCTAATTTCAGTCCTAAACA 59.312 43.478 7.64 0.00 0.00 2.83
346 347 4.391830 CGCTAATTTCAGTCCTAAACAGCA 59.608 41.667 0.00 0.00 31.47 4.41
363 364 6.648879 AACAGCAAAAATTAGGCTTCTGTA 57.351 33.333 0.00 0.00 35.27 2.74
366 367 6.660949 ACAGCAAAAATTAGGCTTCTGTAGAT 59.339 34.615 0.00 0.00 35.27 1.98
368 369 6.660949 AGCAAAAATTAGGCTTCTGTAGATGT 59.339 34.615 0.00 0.00 33.21 3.06
371 372 8.680903 CAAAAATTAGGCTTCTGTAGATGTGAT 58.319 33.333 0.00 0.00 0.00 3.06
377 378 3.873952 GCTTCTGTAGATGTGATTGGACC 59.126 47.826 0.00 0.00 0.00 4.46
441 449 1.008327 TGGGGAGTGGAGATGCTCTAA 59.992 52.381 0.00 0.00 32.67 2.10
445 453 2.102252 GGAGTGGAGATGCTCTAACCAG 59.898 54.545 0.00 0.00 32.67 4.00
452 460 3.177228 AGATGCTCTAACCAGTTGACCT 58.823 45.455 0.00 0.00 0.00 3.85
453 461 2.839486 TGCTCTAACCAGTTGACCTG 57.161 50.000 0.00 0.00 41.15 4.00
454 462 2.325484 TGCTCTAACCAGTTGACCTGA 58.675 47.619 0.00 0.00 44.49 3.86
455 463 2.300152 TGCTCTAACCAGTTGACCTGAG 59.700 50.000 0.00 0.00 44.49 3.35
456 464 2.300437 GCTCTAACCAGTTGACCTGAGT 59.700 50.000 0.00 0.00 44.49 3.41
457 465 3.244249 GCTCTAACCAGTTGACCTGAGTT 60.244 47.826 0.00 0.00 44.49 3.01
474 482 1.000163 AGTTACTCGGCTCACACACAG 60.000 52.381 0.00 0.00 0.00 3.66
504 600 0.539051 GGCACTCCTCAGTACATGCT 59.461 55.000 0.00 0.00 0.00 3.79
673 831 1.302832 AGGCTCCGCACCAAAGAAG 60.303 57.895 0.00 0.00 0.00 2.85
1078 2066 4.760047 GCGCCGACATCACCCTGT 62.760 66.667 0.00 0.00 0.00 4.00
1454 2992 2.552585 TACTACAAGGCGCTGCGGTC 62.553 60.000 24.61 7.69 0.00 4.79
1677 3218 4.803426 GACGCTGCCGGTGAGGAG 62.803 72.222 1.90 0.00 45.00 3.69
1680 3221 4.154347 GCTGCCGGTGAGGAGGAG 62.154 72.222 1.90 0.00 45.00 3.69
1847 3474 6.183360 GCAATAAAGAGACAGAGCTTTCGATT 60.183 38.462 0.00 0.00 35.98 3.34
1931 3558 6.693113 CGCATTGCTCTAGATAGCGATAATAA 59.307 38.462 14.98 0.00 43.41 1.40
1951 3578 9.894783 ATAATAATACTAGTAAGCGTGTGTGAG 57.105 33.333 6.70 0.00 0.00 3.51
1954 3589 0.245539 TAGTAAGCGTGTGTGAGGGC 59.754 55.000 0.00 0.00 0.00 5.19
2023 3666 7.823149 TTTCTTACGAAAATGCTAGACCTAC 57.177 36.000 0.00 0.00 36.26 3.18
2024 3667 5.575957 TCTTACGAAAATGCTAGACCTACG 58.424 41.667 0.00 0.00 0.00 3.51
2025 3668 3.863142 ACGAAAATGCTAGACCTACGT 57.137 42.857 0.00 0.00 0.00 3.57
2026 3669 4.970662 ACGAAAATGCTAGACCTACGTA 57.029 40.909 0.00 0.00 0.00 3.57
2027 3670 4.666237 ACGAAAATGCTAGACCTACGTAC 58.334 43.478 0.00 0.00 0.00 3.67
2028 3671 3.722780 CGAAAATGCTAGACCTACGTACG 59.277 47.826 15.01 15.01 0.00 3.67
2029 3672 3.705043 AAATGCTAGACCTACGTACGG 57.295 47.619 21.06 4.19 0.00 4.02
2030 3673 0.950116 ATGCTAGACCTACGTACGGC 59.050 55.000 21.06 10.89 0.00 5.68
2033 3676 2.224378 TGCTAGACCTACGTACGGCTAT 60.224 50.000 21.06 1.82 0.00 2.97
2034 3677 2.810852 GCTAGACCTACGTACGGCTATT 59.189 50.000 21.06 0.00 0.00 1.73
2035 3678 3.997021 GCTAGACCTACGTACGGCTATTA 59.003 47.826 21.06 1.07 0.00 0.98
2037 3680 2.802816 AGACCTACGTACGGCTATTACG 59.197 50.000 21.06 9.71 46.25 3.18
2042 3685 2.744787 CGTACGGCTATTACGTGACT 57.255 50.000 7.57 0.00 45.20 3.41
2043 3686 3.056952 CGTACGGCTATTACGTGACTT 57.943 47.619 7.57 0.00 45.20 3.01
2044 3687 4.195744 CGTACGGCTATTACGTGACTTA 57.804 45.455 7.57 0.00 45.20 2.24
2045 3688 3.962481 CGTACGGCTATTACGTGACTTAC 59.038 47.826 7.57 0.00 45.20 2.34
2061 3704 7.181143 GTGACTTACGTAAACTTTCATTCCA 57.819 36.000 9.68 0.00 0.00 3.53
2063 3706 7.955864 GTGACTTACGTAAACTTTCATTCCATC 59.044 37.037 9.68 0.00 0.00 3.51
2064 3707 7.876068 TGACTTACGTAAACTTTCATTCCATCT 59.124 33.333 9.68 0.00 0.00 2.90
2065 3708 9.362539 GACTTACGTAAACTTTCATTCCATCTA 57.637 33.333 9.68 0.00 0.00 1.98
2066 3709 9.715121 ACTTACGTAAACTTTCATTCCATCTAA 57.285 29.630 9.68 0.00 0.00 2.10
2067 3710 9.968743 CTTACGTAAACTTTCATTCCATCTAAC 57.031 33.333 9.68 0.00 0.00 2.34
2068 3711 9.715121 TTACGTAAACTTTCATTCCATCTAACT 57.285 29.630 5.31 0.00 0.00 2.24
2070 3713 9.715121 ACGTAAACTTTCATTCCATCTAACTAA 57.285 29.630 0.00 0.00 0.00 2.24
2078 3721 9.847224 TTTCATTCCATCTAACTAAATACTCCC 57.153 33.333 0.00 0.00 0.00 4.30
2080 3723 8.871125 TCATTCCATCTAACTAAATACTCCCTC 58.129 37.037 0.00 0.00 0.00 4.30
2083 3726 6.085416 CCATCTAACTAAATACTCCCTCCCT 58.915 44.000 0.00 0.00 0.00 4.20
2084 3727 6.014156 CCATCTAACTAAATACTCCCTCCCTG 60.014 46.154 0.00 0.00 0.00 4.45
2085 3728 6.351317 TCTAACTAAATACTCCCTCCCTGA 57.649 41.667 0.00 0.00 0.00 3.86
2086 3729 6.935036 TCTAACTAAATACTCCCTCCCTGAT 58.065 40.000 0.00 0.00 0.00 2.90
2087 3730 7.371043 TCTAACTAAATACTCCCTCCCTGATT 58.629 38.462 0.00 0.00 0.00 2.57
2088 3731 6.502074 AACTAAATACTCCCTCCCTGATTC 57.498 41.667 0.00 0.00 0.00 2.52
2089 3732 5.793967 ACTAAATACTCCCTCCCTGATTCT 58.206 41.667 0.00 0.00 0.00 2.40
2091 3734 4.286813 AATACTCCCTCCCTGATTCTCA 57.713 45.455 0.00 0.00 0.00 3.27
2092 3735 2.173126 ACTCCCTCCCTGATTCTCAG 57.827 55.000 0.00 0.00 43.91 3.35
2099 3742 4.972875 CTGATTCTCAGGGTGGGC 57.027 61.111 0.00 0.00 40.71 5.36
2100 3743 1.225704 CTGATTCTCAGGGTGGGCC 59.774 63.158 0.00 0.00 40.71 5.80
2115 3758 3.335711 GCCCCAGCCTCCACTAAT 58.664 61.111 0.00 0.00 0.00 1.73
2116 3759 2.539983 GCCCCAGCCTCCACTAATA 58.460 57.895 0.00 0.00 0.00 0.98
2117 3760 1.068121 GCCCCAGCCTCCACTAATAT 58.932 55.000 0.00 0.00 0.00 1.28
2118 3761 1.003696 GCCCCAGCCTCCACTAATATC 59.996 57.143 0.00 0.00 0.00 1.63
2119 3762 1.630878 CCCCAGCCTCCACTAATATCC 59.369 57.143 0.00 0.00 0.00 2.59
2120 3763 2.338809 CCCAGCCTCCACTAATATCCA 58.661 52.381 0.00 0.00 0.00 3.41
2121 3764 2.711009 CCCAGCCTCCACTAATATCCAA 59.289 50.000 0.00 0.00 0.00 3.53
2122 3765 3.331889 CCCAGCCTCCACTAATATCCAAT 59.668 47.826 0.00 0.00 0.00 3.16
2123 3766 4.330250 CCAGCCTCCACTAATATCCAATG 58.670 47.826 0.00 0.00 0.00 2.82
2124 3767 4.042062 CCAGCCTCCACTAATATCCAATGA 59.958 45.833 0.00 0.00 0.00 2.57
2125 3768 5.456619 CCAGCCTCCACTAATATCCAATGAA 60.457 44.000 0.00 0.00 0.00 2.57
2126 3769 6.064060 CAGCCTCCACTAATATCCAATGAAA 58.936 40.000 0.00 0.00 0.00 2.69
2127 3770 6.206243 CAGCCTCCACTAATATCCAATGAAAG 59.794 42.308 0.00 0.00 0.00 2.62
2128 3771 6.101734 AGCCTCCACTAATATCCAATGAAAGA 59.898 38.462 0.00 0.00 0.00 2.52
2129 3772 6.205658 GCCTCCACTAATATCCAATGAAAGAC 59.794 42.308 0.00 0.00 0.00 3.01
2130 3773 7.282585 CCTCCACTAATATCCAATGAAAGACA 58.717 38.462 0.00 0.00 0.00 3.41
2131 3774 7.775093 CCTCCACTAATATCCAATGAAAGACAA 59.225 37.037 0.00 0.00 0.00 3.18
2132 3775 8.506168 TCCACTAATATCCAATGAAAGACAAC 57.494 34.615 0.00 0.00 0.00 3.32
2133 3776 7.556275 TCCACTAATATCCAATGAAAGACAACC 59.444 37.037 0.00 0.00 0.00 3.77
2134 3777 7.339212 CCACTAATATCCAATGAAAGACAACCA 59.661 37.037 0.00 0.00 0.00 3.67
2135 3778 8.739039 CACTAATATCCAATGAAAGACAACCAA 58.261 33.333 0.00 0.00 0.00 3.67
2136 3779 9.308000 ACTAATATCCAATGAAAGACAACCAAA 57.692 29.630 0.00 0.00 0.00 3.28
2139 3782 6.669125 ATCCAATGAAAGACAACCAAATCA 57.331 33.333 0.00 0.00 0.00 2.57
2140 3783 5.841810 TCCAATGAAAGACAACCAAATCAC 58.158 37.500 0.00 0.00 0.00 3.06
2141 3784 4.990426 CCAATGAAAGACAACCAAATCACC 59.010 41.667 0.00 0.00 0.00 4.02
2142 3785 4.871933 ATGAAAGACAACCAAATCACCC 57.128 40.909 0.00 0.00 0.00 4.61
2143 3786 2.962421 TGAAAGACAACCAAATCACCCC 59.038 45.455 0.00 0.00 0.00 4.95
2144 3787 2.765689 AAGACAACCAAATCACCCCA 57.234 45.000 0.00 0.00 0.00 4.96
2145 3788 2.999185 AGACAACCAAATCACCCCAT 57.001 45.000 0.00 0.00 0.00 4.00
2146 3789 4.396357 AAGACAACCAAATCACCCCATA 57.604 40.909 0.00 0.00 0.00 2.74
2147 3790 4.608170 AGACAACCAAATCACCCCATAT 57.392 40.909 0.00 0.00 0.00 1.78
2148 3791 4.280819 AGACAACCAAATCACCCCATATG 58.719 43.478 0.00 0.00 0.00 1.78
2149 3792 4.023291 GACAACCAAATCACCCCATATGT 58.977 43.478 1.24 0.00 0.00 2.29
2150 3793 5.044476 AGACAACCAAATCACCCCATATGTA 60.044 40.000 1.24 0.00 0.00 2.29
2151 3794 5.584913 ACAACCAAATCACCCCATATGTAA 58.415 37.500 1.24 0.00 0.00 2.41
2152 3795 5.656416 ACAACCAAATCACCCCATATGTAAG 59.344 40.000 1.24 0.00 0.00 2.34
2153 3796 4.803452 ACCAAATCACCCCATATGTAAGG 58.197 43.478 1.24 2.20 0.00 2.69
2154 3797 4.231890 ACCAAATCACCCCATATGTAAGGT 59.768 41.667 1.24 2.84 0.00 3.50
2155 3798 5.433712 ACCAAATCACCCCATATGTAAGGTA 59.566 40.000 8.53 0.97 0.00 3.08
2156 3799 5.768164 CCAAATCACCCCATATGTAAGGTAC 59.232 44.000 8.53 0.00 0.00 3.34
2157 3800 4.884668 ATCACCCCATATGTAAGGTACG 57.115 45.455 8.53 0.34 0.00 3.67
2158 3801 3.645434 TCACCCCATATGTAAGGTACGT 58.355 45.455 8.53 0.00 0.00 3.57
2159 3802 4.802307 TCACCCCATATGTAAGGTACGTA 58.198 43.478 8.53 0.00 34.89 3.57
2160 3803 5.207354 TCACCCCATATGTAAGGTACGTAA 58.793 41.667 0.00 0.00 34.17 3.18
2161 3804 5.660417 TCACCCCATATGTAAGGTACGTAAA 59.340 40.000 0.00 0.00 34.17 2.01
2162 3805 6.155910 TCACCCCATATGTAAGGTACGTAAAA 59.844 38.462 0.00 0.00 34.17 1.52
2163 3806 6.822676 CACCCCATATGTAAGGTACGTAAAAA 59.177 38.462 0.00 0.00 34.17 1.94
2164 3807 6.823182 ACCCCATATGTAAGGTACGTAAAAAC 59.177 38.462 0.00 0.00 34.17 2.43
2165 3808 6.260714 CCCCATATGTAAGGTACGTAAAAACC 59.739 42.308 0.00 0.00 34.17 3.27
2172 3815 4.472691 AGGTACGTAAAAACCTTTTCGC 57.527 40.909 1.73 0.00 43.77 4.70
2173 3816 3.876320 AGGTACGTAAAAACCTTTTCGCA 59.124 39.130 1.73 0.00 43.77 5.10
2174 3817 4.335037 AGGTACGTAAAAACCTTTTCGCAA 59.665 37.500 1.73 0.00 43.77 4.85
2175 3818 4.671964 GGTACGTAAAAACCTTTTCGCAAG 59.328 41.667 0.00 0.00 38.46 4.01
2176 3819 4.359971 ACGTAAAAACCTTTTCGCAAGT 57.640 36.364 0.00 0.00 38.46 3.16
2177 3820 4.099824 ACGTAAAAACCTTTTCGCAAGTG 58.900 39.130 0.00 0.00 38.46 3.16
2178 3821 4.099824 CGTAAAAACCTTTTCGCAAGTGT 58.900 39.130 0.00 0.00 39.48 3.55
2179 3822 5.163774 ACGTAAAAACCTTTTCGCAAGTGTA 60.164 36.000 0.00 0.00 38.46 2.90
2180 3823 5.394322 CGTAAAAACCTTTTCGCAAGTGTAG 59.606 40.000 0.00 0.00 39.48 2.74
2181 3824 3.349488 AAACCTTTTCGCAAGTGTAGC 57.651 42.857 0.00 0.00 39.48 3.58
2182 3825 1.961793 ACCTTTTCGCAAGTGTAGCA 58.038 45.000 0.00 0.00 39.48 3.49
2183 3826 2.504367 ACCTTTTCGCAAGTGTAGCAT 58.496 42.857 0.00 0.00 39.48 3.79
2184 3827 2.884639 ACCTTTTCGCAAGTGTAGCATT 59.115 40.909 0.00 0.00 39.48 3.56
2185 3828 3.236816 CCTTTTCGCAAGTGTAGCATTG 58.763 45.455 0.00 0.00 39.48 2.82
2186 3829 2.330231 TTTCGCAAGTGTAGCATTGC 57.670 45.000 0.00 0.00 46.53 3.56
2191 3834 3.565905 GCAAGTGTAGCATTGCTCTTT 57.434 42.857 15.81 2.95 46.49 2.52
2192 3835 3.905784 GCAAGTGTAGCATTGCTCTTTT 58.094 40.909 15.81 3.30 46.49 2.27
2193 3836 4.301628 GCAAGTGTAGCATTGCTCTTTTT 58.698 39.130 15.81 3.67 46.49 1.94
2194 3837 4.383948 GCAAGTGTAGCATTGCTCTTTTTC 59.616 41.667 15.81 1.74 46.49 2.29
2195 3838 5.766222 CAAGTGTAGCATTGCTCTTTTTCT 58.234 37.500 15.81 3.97 40.44 2.52
2196 3839 6.211515 CAAGTGTAGCATTGCTCTTTTTCTT 58.788 36.000 15.81 9.42 40.44 2.52
2197 3840 7.362662 CAAGTGTAGCATTGCTCTTTTTCTTA 58.637 34.615 15.81 0.00 40.44 2.10
2201 3844 6.658816 TGTAGCATTGCTCTTTTTCTTATGGA 59.341 34.615 15.81 0.00 40.44 3.41
2212 3855 8.475331 TCTTTTTCTTATGGATTCGTGTAGTC 57.525 34.615 0.00 0.00 0.00 2.59
2215 3858 9.878667 TTTTTCTTATGGATTCGTGTAGTCATA 57.121 29.630 0.00 0.00 0.00 2.15
2221 3864 5.902681 TGGATTCGTGTAGTCATAAAGAGG 58.097 41.667 0.00 0.00 0.00 3.69
2227 3870 4.159879 CGTGTAGTCATAAAGAGGGACCTT 59.840 45.833 0.00 0.00 31.99 3.50
2236 3879 7.178805 GTCATAAAGAGGGACCTTATACCTAGG 59.821 44.444 7.41 7.41 38.79 3.02
2250 3893 1.171308 CCTAGGGAACGTTCGTCAGA 58.829 55.000 21.34 8.07 0.00 3.27
2302 3983 1.464997 GTTTCTTCAGGCGACATGTCC 59.535 52.381 20.03 12.32 0.00 4.02
2329 4011 6.915843 TCTGAGAAGGCAATTTCGTTTAAAAC 59.084 34.615 0.00 0.00 32.33 2.43
2333 4015 7.143340 AGAAGGCAATTTCGTTTAAAACCTAC 58.857 34.615 0.00 0.00 31.94 3.18
2334 4016 6.644248 AGGCAATTTCGTTTAAAACCTACT 57.356 33.333 0.00 0.00 30.99 2.57
2335 4017 7.046292 AGGCAATTTCGTTTAAAACCTACTT 57.954 32.000 0.00 0.00 30.99 2.24
2336 4018 6.921307 AGGCAATTTCGTTTAAAACCTACTTG 59.079 34.615 0.00 0.00 30.99 3.16
2337 4019 6.698329 GGCAATTTCGTTTAAAACCTACTTGT 59.302 34.615 0.00 0.00 0.00 3.16
2338 4020 7.223193 GGCAATTTCGTTTAAAACCTACTTGTT 59.777 33.333 0.00 0.00 0.00 2.83
2342 4024 6.981762 TCGTTTAAAACCTACTTGTTGTCA 57.018 33.333 0.00 0.00 0.00 3.58
2353 4036 4.410492 ACTTGTTGTCATTTGATCTCGC 57.590 40.909 0.00 0.00 0.00 5.03
2358 4041 5.830912 TGTTGTCATTTGATCTCGCTTTTT 58.169 33.333 0.00 0.00 0.00 1.94
2363 4046 5.792468 GTCATTTGATCTCGCTTTTTCACTC 59.208 40.000 0.00 0.00 0.00 3.51
2368 4051 4.574421 TGATCTCGCTTTTTCACTCAAACA 59.426 37.500 0.00 0.00 0.00 2.83
2382 4065 9.889128 TTTCACTCAAACAGTCATCATATATGA 57.111 29.630 17.56 17.56 35.43 2.15
2406 4090 2.859273 CTTGCCACCCCTACAGCGAG 62.859 65.000 0.00 0.00 0.00 5.03
2452 4168 7.414098 CCGACAAAGAGACTTTTCTTTTCTTGA 60.414 37.037 0.00 0.00 43.08 3.02
2453 4169 7.426743 CGACAAAGAGACTTTTCTTTTCTTGAC 59.573 37.037 0.00 0.00 43.08 3.18
2464 4180 6.515272 TTCTTTTCTTGACACAGAGCTTTT 57.485 33.333 0.00 0.00 0.00 2.27
2485 4201 1.129437 GAGTTTCGTCCTTGCATCTGC 59.871 52.381 0.00 0.00 42.50 4.26
2488 4204 3.197790 CGTCCTTGCATCTGCCGG 61.198 66.667 0.00 0.00 41.18 6.13
2510 4226 5.488341 GGTCCATGTTGTGTGTTCTACTAT 58.512 41.667 0.00 0.00 0.00 2.12
2525 4241 4.481072 TCTACTATCTCTAAACTGCCCCC 58.519 47.826 0.00 0.00 0.00 5.40
2530 4246 1.777878 TCTCTAAACTGCCCCCAACAA 59.222 47.619 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.394712 AACCCTTCCTCGCCGCTG 62.395 66.667 0.00 0.00 0.00 5.18
17 18 4.394712 CAACCCTTCCTCGCCGCT 62.395 66.667 0.00 0.00 0.00 5.52
20 21 3.569200 AAGCCAACCCTTCCTCGCC 62.569 63.158 0.00 0.00 0.00 5.54
21 22 1.179174 AAAAGCCAACCCTTCCTCGC 61.179 55.000 0.00 0.00 0.00 5.03
22 23 2.194201 TAAAAGCCAACCCTTCCTCG 57.806 50.000 0.00 0.00 0.00 4.63
23 24 3.632604 GCTATAAAAGCCAACCCTTCCTC 59.367 47.826 0.00 0.00 46.25 3.71
24 25 3.632333 GCTATAAAAGCCAACCCTTCCT 58.368 45.455 0.00 0.00 46.25 3.36
36 37 1.217882 CCCACTCGCCGCTATAAAAG 58.782 55.000 0.00 0.00 0.00 2.27
37 38 0.812412 GCCCACTCGCCGCTATAAAA 60.812 55.000 0.00 0.00 0.00 1.52
38 39 1.227438 GCCCACTCGCCGCTATAAA 60.227 57.895 0.00 0.00 0.00 1.40
39 40 2.420043 GCCCACTCGCCGCTATAA 59.580 61.111 0.00 0.00 0.00 0.98
40 41 3.973516 CGCCCACTCGCCGCTATA 61.974 66.667 0.00 0.00 0.00 1.31
59 60 4.862092 ACTGATGCCGCTCGCTCG 62.862 66.667 0.00 0.00 38.78 5.03
60 61 3.260483 CACTGATGCCGCTCGCTC 61.260 66.667 0.00 0.00 38.78 5.03
61 62 4.074526 ACACTGATGCCGCTCGCT 62.075 61.111 0.00 0.00 38.78 4.93
62 63 3.857854 CACACTGATGCCGCTCGC 61.858 66.667 0.00 0.00 38.31 5.03
63 64 3.190849 CCACACTGATGCCGCTCG 61.191 66.667 0.00 0.00 0.00 5.03
64 65 2.103042 GTCCACACTGATGCCGCTC 61.103 63.158 0.00 0.00 0.00 5.03
65 66 2.046892 GTCCACACTGATGCCGCT 60.047 61.111 0.00 0.00 0.00 5.52
66 67 3.490759 CGTCCACACTGATGCCGC 61.491 66.667 0.00 0.00 0.00 6.53
67 68 3.490759 GCGTCCACACTGATGCCG 61.491 66.667 0.00 0.00 40.62 5.69
68 69 3.490759 CGCGTCCACACTGATGCC 61.491 66.667 0.00 0.00 42.96 4.40
69 70 2.738521 ACGCGTCCACACTGATGC 60.739 61.111 5.58 0.00 42.57 3.91
70 71 2.382746 CCACGCGTCCACACTGATG 61.383 63.158 9.86 0.00 0.00 3.07
71 72 2.048222 CCACGCGTCCACACTGAT 60.048 61.111 9.86 0.00 0.00 2.90
72 73 3.533105 ACCACGCGTCCACACTGA 61.533 61.111 9.86 0.00 0.00 3.41
73 74 3.337889 CACCACGCGTCCACACTG 61.338 66.667 9.86 0.00 0.00 3.66
74 75 4.602259 CCACCACGCGTCCACACT 62.602 66.667 9.86 0.00 0.00 3.55
112 113 3.414700 CAGTGAAGACGCGCCACC 61.415 66.667 5.73 0.00 0.00 4.61
113 114 4.077188 GCAGTGAAGACGCGCCAC 62.077 66.667 5.73 9.75 0.00 5.01
130 131 3.202001 ATTGATTCACGGGCGGCG 61.202 61.111 0.51 0.51 0.00 6.46
131 132 2.408835 CATTGATTCACGGGCGGC 59.591 61.111 0.00 0.00 0.00 6.53
132 133 1.029408 TTCCATTGATTCACGGGCGG 61.029 55.000 2.29 0.00 0.00 6.13
133 134 0.378257 CTTCCATTGATTCACGGGCG 59.622 55.000 2.29 0.00 0.00 6.13
134 135 0.740737 CCTTCCATTGATTCACGGGC 59.259 55.000 2.29 0.00 0.00 6.13
135 136 0.740737 GCCTTCCATTGATTCACGGG 59.259 55.000 2.29 0.01 0.00 5.28
136 137 1.402968 CAGCCTTCCATTGATTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
137 138 2.096496 GTCAGCCTTCCATTGATTCACG 59.904 50.000 0.00 0.00 0.00 4.35
138 139 2.424956 GGTCAGCCTTCCATTGATTCAC 59.575 50.000 0.00 0.00 0.00 3.18
139 140 2.726821 GGTCAGCCTTCCATTGATTCA 58.273 47.619 0.00 0.00 0.00 2.57
140 141 1.672881 CGGTCAGCCTTCCATTGATTC 59.327 52.381 0.00 0.00 0.00 2.52
141 142 1.683011 CCGGTCAGCCTTCCATTGATT 60.683 52.381 0.00 0.00 0.00 2.57
142 143 0.107017 CCGGTCAGCCTTCCATTGAT 60.107 55.000 0.00 0.00 0.00 2.57
143 144 1.299648 CCGGTCAGCCTTCCATTGA 59.700 57.895 0.00 0.00 0.00 2.57
144 145 1.002134 ACCGGTCAGCCTTCCATTG 60.002 57.895 0.00 0.00 0.00 2.82
145 146 1.002134 CACCGGTCAGCCTTCCATT 60.002 57.895 2.59 0.00 0.00 3.16
146 147 2.671070 CACCGGTCAGCCTTCCAT 59.329 61.111 2.59 0.00 0.00 3.41
147 148 3.636231 CCACCGGTCAGCCTTCCA 61.636 66.667 2.59 0.00 0.00 3.53
149 150 4.329545 TGCCACCGGTCAGCCTTC 62.330 66.667 20.59 0.00 0.00 3.46
150 151 4.335647 CTGCCACCGGTCAGCCTT 62.336 66.667 20.59 0.00 0.00 4.35
154 155 4.335647 AAGGCTGCCACCGGTCAG 62.336 66.667 22.65 16.95 32.70 3.51
155 156 4.329545 GAAGGCTGCCACCGGTCA 62.330 66.667 22.65 0.00 33.69 4.02
160 161 3.064324 AATGCGAAGGCTGCCACC 61.064 61.111 22.65 10.78 40.82 4.61
161 162 1.660560 ATCAATGCGAAGGCTGCCAC 61.661 55.000 22.65 13.27 40.82 5.01
162 163 0.966875 AATCAATGCGAAGGCTGCCA 60.967 50.000 22.65 0.00 40.82 4.92
163 164 0.248784 GAATCAATGCGAAGGCTGCC 60.249 55.000 11.65 11.65 40.82 4.85
164 165 0.248784 GGAATCAATGCGAAGGCTGC 60.249 55.000 0.00 0.00 40.82 5.25
165 166 1.065102 CAGGAATCAATGCGAAGGCTG 59.935 52.381 0.00 0.00 40.82 4.85
166 167 1.340405 ACAGGAATCAATGCGAAGGCT 60.340 47.619 0.00 0.00 40.82 4.58
167 168 1.098050 ACAGGAATCAATGCGAAGGC 58.902 50.000 0.00 0.00 40.52 4.35
168 169 1.402968 CCACAGGAATCAATGCGAAGG 59.597 52.381 0.00 0.00 0.00 3.46
169 170 1.402968 CCCACAGGAATCAATGCGAAG 59.597 52.381 0.00 0.00 33.47 3.79
170 171 1.004161 TCCCACAGGAATCAATGCGAA 59.996 47.619 0.00 0.00 40.08 4.70
171 172 0.617935 TCCCACAGGAATCAATGCGA 59.382 50.000 0.00 0.00 40.08 5.10
172 173 3.173540 TCCCACAGGAATCAATGCG 57.826 52.632 0.00 0.00 40.08 4.73
181 182 2.890766 GCCTCGGTTTCCCACAGGA 61.891 63.158 0.00 0.00 41.88 3.86
182 183 2.359975 GCCTCGGTTTCCCACAGG 60.360 66.667 0.00 0.00 34.67 4.00
183 184 2.521958 ATCGCCTCGGTTTCCCACAG 62.522 60.000 0.00 0.00 0.00 3.66
184 185 2.589157 ATCGCCTCGGTTTCCCACA 61.589 57.895 0.00 0.00 0.00 4.17
185 186 2.106683 CATCGCCTCGGTTTCCCAC 61.107 63.158 0.00 0.00 0.00 4.61
186 187 1.622607 ATCATCGCCTCGGTTTCCCA 61.623 55.000 0.00 0.00 0.00 4.37
187 188 1.146263 ATCATCGCCTCGGTTTCCC 59.854 57.895 0.00 0.00 0.00 3.97
188 189 0.179084 TCATCATCGCCTCGGTTTCC 60.179 55.000 0.00 0.00 0.00 3.13
189 190 0.931005 GTCATCATCGCCTCGGTTTC 59.069 55.000 0.00 0.00 0.00 2.78
190 191 0.806102 CGTCATCATCGCCTCGGTTT 60.806 55.000 0.00 0.00 0.00 3.27
191 192 1.226974 CGTCATCATCGCCTCGGTT 60.227 57.895 0.00 0.00 0.00 4.44
192 193 2.119029 TCGTCATCATCGCCTCGGT 61.119 57.895 0.00 0.00 0.00 4.69
193 194 1.658717 GTCGTCATCATCGCCTCGG 60.659 63.158 0.00 0.00 0.00 4.63
194 195 2.006062 CGTCGTCATCATCGCCTCG 61.006 63.158 0.00 0.00 0.00 4.63
195 196 0.248498 TTCGTCGTCATCATCGCCTC 60.248 55.000 0.00 0.00 0.00 4.70
196 197 0.248661 CTTCGTCGTCATCATCGCCT 60.249 55.000 0.00 0.00 0.00 5.52
197 198 0.248498 TCTTCGTCGTCATCATCGCC 60.248 55.000 0.00 0.00 0.00 5.54
198 199 1.759994 ATCTTCGTCGTCATCATCGC 58.240 50.000 0.00 0.00 0.00 4.58
199 200 3.622828 AGAATCTTCGTCGTCATCATCG 58.377 45.455 0.00 0.00 0.00 3.84
200 201 3.661728 CGAGAATCTTCGTCGTCATCATC 59.338 47.826 0.00 0.00 35.91 2.92
201 202 3.549019 CCGAGAATCTTCGTCGTCATCAT 60.549 47.826 0.00 0.00 38.88 2.45
202 203 2.223272 CCGAGAATCTTCGTCGTCATCA 60.223 50.000 0.00 0.00 38.88 3.07
203 204 2.376956 CCGAGAATCTTCGTCGTCATC 58.623 52.381 0.00 0.00 38.88 2.92
204 205 1.534175 GCCGAGAATCTTCGTCGTCAT 60.534 52.381 0.00 0.00 38.88 3.06
205 206 0.179171 GCCGAGAATCTTCGTCGTCA 60.179 55.000 0.00 0.00 38.88 4.35
206 207 0.179171 TGCCGAGAATCTTCGTCGTC 60.179 55.000 0.00 1.11 38.88 4.20
207 208 0.456221 ATGCCGAGAATCTTCGTCGT 59.544 50.000 0.00 0.00 38.88 4.34
208 209 1.124462 GATGCCGAGAATCTTCGTCG 58.876 55.000 0.00 0.00 38.88 5.12
209 210 1.124462 CGATGCCGAGAATCTTCGTC 58.876 55.000 0.00 0.00 38.88 4.20
210 211 0.872021 GCGATGCCGAGAATCTTCGT 60.872 55.000 3.69 0.00 38.88 3.85
211 212 1.552348 GGCGATGCCGAGAATCTTCG 61.552 60.000 0.00 0.00 39.62 3.79
212 213 2.229965 GGCGATGCCGAGAATCTTC 58.770 57.895 0.00 0.00 39.62 2.87
213 214 4.445699 GGCGATGCCGAGAATCTT 57.554 55.556 0.00 0.00 39.62 2.40
223 224 4.819761 TCAGCGACTGGGCGATGC 62.820 66.667 9.33 0.00 46.20 3.91
225 226 3.069980 GAGTCAGCGACTGGGCGAT 62.070 63.158 14.47 0.00 43.53 4.58
226 227 3.749064 GAGTCAGCGACTGGGCGA 61.749 66.667 14.47 0.00 43.53 5.54
237 238 4.436998 GTGGACCCGCCGAGTCAG 62.437 72.222 0.14 0.00 40.66 3.51
245 246 4.660938 AAAGCCTGGTGGACCCGC 62.661 66.667 0.00 0.00 35.15 6.13
246 247 2.359975 GAAAGCCTGGTGGACCCG 60.360 66.667 0.00 0.00 35.15 5.28
247 248 2.359975 CGAAAGCCTGGTGGACCC 60.360 66.667 0.00 0.00 34.57 4.46
259 260 2.096958 GGAAACATTTTTGGCGCGAAAG 60.097 45.455 17.08 9.09 0.00 2.62
260 261 1.861575 GGAAACATTTTTGGCGCGAAA 59.138 42.857 13.91 13.91 0.00 3.46
261 262 1.492720 GGAAACATTTTTGGCGCGAA 58.507 45.000 12.10 0.00 0.00 4.70
262 263 0.319125 GGGAAACATTTTTGGCGCGA 60.319 50.000 12.10 0.00 0.00 5.87
263 264 1.288419 GGGGAAACATTTTTGGCGCG 61.288 55.000 0.00 0.00 0.00 6.86
264 265 0.953471 GGGGGAAACATTTTTGGCGC 60.953 55.000 0.00 0.00 0.00 6.53
265 266 0.669012 CGGGGGAAACATTTTTGGCG 60.669 55.000 0.00 0.00 0.00 5.69
266 267 0.321210 CCGGGGGAAACATTTTTGGC 60.321 55.000 0.00 0.00 0.00 4.52
267 268 0.321210 GCCGGGGGAAACATTTTTGG 60.321 55.000 2.18 0.00 0.00 3.28
268 269 0.669012 CGCCGGGGGAAACATTTTTG 60.669 55.000 11.42 0.00 0.00 2.44
269 270 1.116536 ACGCCGGGGGAAACATTTTT 61.117 50.000 23.83 0.00 0.00 1.94
270 271 1.529152 GACGCCGGGGGAAACATTTT 61.529 55.000 23.83 0.00 0.00 1.82
271 272 1.974875 GACGCCGGGGGAAACATTT 60.975 57.895 23.83 0.00 0.00 2.32
272 273 2.360726 GACGCCGGGGGAAACATT 60.361 61.111 23.83 0.00 0.00 2.71
273 274 3.325201 GAGACGCCGGGGGAAACAT 62.325 63.158 23.83 0.00 0.00 2.71
274 275 4.011517 GAGACGCCGGGGGAAACA 62.012 66.667 23.83 0.00 0.00 2.83
292 293 4.681978 ACAGAACCCGGCGCACTC 62.682 66.667 10.83 0.00 0.00 3.51
293 294 4.681978 GACAGAACCCGGCGCACT 62.682 66.667 10.83 0.00 0.00 4.40
294 295 4.681978 AGACAGAACCCGGCGCAC 62.682 66.667 10.83 0.00 0.00 5.34
295 296 4.680237 CAGACAGAACCCGGCGCA 62.680 66.667 10.83 0.00 0.00 6.09
296 297 3.876589 TTCAGACAGAACCCGGCGC 62.877 63.158 0.00 0.00 0.00 6.53
297 298 1.079127 ATTCAGACAGAACCCGGCG 60.079 57.895 0.00 0.00 39.49 6.46
298 299 0.744771 GGATTCAGACAGAACCCGGC 60.745 60.000 0.00 0.00 39.49 6.13
299 300 3.460648 GGATTCAGACAGAACCCGG 57.539 57.895 0.00 0.00 39.49 5.73
301 302 1.736032 CGACGGATTCAGACAGAACCC 60.736 57.143 0.00 0.00 39.49 4.11
302 303 1.630148 CGACGGATTCAGACAGAACC 58.370 55.000 0.00 0.00 39.49 3.62
303 304 1.630148 CCGACGGATTCAGACAGAAC 58.370 55.000 8.64 0.00 39.49 3.01
304 305 0.108804 GCCGACGGATTCAGACAGAA 60.109 55.000 20.50 0.00 41.28 3.02
305 306 1.511305 GCCGACGGATTCAGACAGA 59.489 57.895 20.50 0.00 0.00 3.41
306 307 1.874019 CGCCGACGGATTCAGACAG 60.874 63.158 20.50 0.00 34.97 3.51
307 308 2.180769 CGCCGACGGATTCAGACA 59.819 61.111 20.50 0.00 34.97 3.41
308 309 2.332362 TAGCGCCGACGGATTCAGAC 62.332 60.000 20.50 0.00 40.57 3.51
309 310 1.659622 TTAGCGCCGACGGATTCAGA 61.660 55.000 20.50 0.00 40.57 3.27
310 311 0.597637 ATTAGCGCCGACGGATTCAG 60.598 55.000 20.50 3.73 40.57 3.02
311 312 0.179094 AATTAGCGCCGACGGATTCA 60.179 50.000 20.50 0.00 40.57 2.57
312 313 0.935196 AAATTAGCGCCGACGGATTC 59.065 50.000 20.50 5.15 40.57 2.52
313 314 0.935196 GAAATTAGCGCCGACGGATT 59.065 50.000 20.50 4.87 40.57 3.01
314 315 0.179094 TGAAATTAGCGCCGACGGAT 60.179 50.000 20.50 4.89 40.57 4.18
315 316 0.804544 CTGAAATTAGCGCCGACGGA 60.805 55.000 20.50 0.00 40.57 4.69
316 317 1.082117 ACTGAAATTAGCGCCGACGG 61.082 55.000 10.29 10.29 40.57 4.79
317 318 0.297820 GACTGAAATTAGCGCCGACG 59.702 55.000 2.29 0.00 44.07 5.12
318 319 0.651031 GGACTGAAATTAGCGCCGAC 59.349 55.000 2.29 0.00 0.00 4.79
319 320 0.535335 AGGACTGAAATTAGCGCCGA 59.465 50.000 2.29 0.00 0.00 5.54
335 336 6.493458 AGAAGCCTAATTTTTGCTGTTTAGGA 59.507 34.615 10.88 0.00 42.10 2.94
341 342 6.003950 TCTACAGAAGCCTAATTTTTGCTGT 58.996 36.000 0.00 0.00 38.68 4.40
343 344 6.660949 ACATCTACAGAAGCCTAATTTTTGCT 59.339 34.615 0.00 0.00 36.79 3.91
346 347 8.814038 ATCACATCTACAGAAGCCTAATTTTT 57.186 30.769 0.00 0.00 0.00 1.94
353 354 3.776969 TCCAATCACATCTACAGAAGCCT 59.223 43.478 0.00 0.00 0.00 4.58
414 418 1.229658 CTCCACTCCCCAAGGACCT 60.230 63.158 0.00 0.00 37.19 3.85
417 421 1.274703 GCATCTCCACTCCCCAAGGA 61.275 60.000 0.00 0.00 41.08 3.36
445 453 1.272769 AGCCGAGTAACTCAGGTCAAC 59.727 52.381 0.00 0.00 30.83 3.18
452 460 1.000607 GTGTGTGAGCCGAGTAACTCA 60.001 52.381 0.00 0.00 40.54 3.41
453 461 1.000607 TGTGTGTGAGCCGAGTAACTC 60.001 52.381 0.00 0.00 0.00 3.01
454 462 1.000163 CTGTGTGTGAGCCGAGTAACT 60.000 52.381 0.00 0.00 0.00 2.24
455 463 1.419374 CTGTGTGTGAGCCGAGTAAC 58.581 55.000 0.00 0.00 0.00 2.50
456 464 0.317160 CCTGTGTGTGAGCCGAGTAA 59.683 55.000 0.00 0.00 0.00 2.24
457 465 0.826256 ACCTGTGTGTGAGCCGAGTA 60.826 55.000 0.00 0.00 0.00 2.59
553 654 2.237751 CCGGGCTTAAGATCACGCG 61.238 63.158 3.53 3.53 38.09 6.01
628 768 0.251634 AGCTAGCTTGACTGGGCTTC 59.748 55.000 12.68 0.00 39.65 3.86
921 1082 1.456705 GAGGAGGATGGAGGCGTCT 60.457 63.158 6.34 0.00 0.00 4.18
1422 2960 2.995466 TGTAGTACCCGTTGTCGAAG 57.005 50.000 0.00 0.00 39.71 3.79
1454 2992 4.641645 TGAGCACGCCCTGGTTGG 62.642 66.667 0.00 0.00 0.00 3.77
1670 3211 2.041405 CCTCCCCCTCCTCCTCAC 60.041 72.222 0.00 0.00 0.00 3.51
1671 3212 2.204624 TCCTCCCCCTCCTCCTCA 60.205 66.667 0.00 0.00 0.00 3.86
1674 3215 3.036959 TCCTCCTCCCCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1676 3217 3.039526 CCTCCTCCTCCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
1677 3218 3.036959 TCCTCCTCCTCCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1679 3220 3.039526 CCTCCTCCTCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
1680 3221 3.036959 TCCTCCTCCTCCTCCCCC 61.037 72.222 0.00 0.00 0.00 5.40
1683 3224 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1804 3423 1.086696 GCTACATGAACCATGCACGT 58.913 50.000 0.00 0.00 44.80 4.49
1847 3474 3.317603 TCAAGATCAGATGCAACGACA 57.682 42.857 0.00 0.00 0.00 4.35
1906 3533 2.338140 TCGCTATCTAGAGCAATGCG 57.662 50.000 16.15 16.15 42.99 4.73
1931 3558 3.380637 CCCTCACACACGCTTACTAGTAT 59.619 47.826 2.79 0.00 0.00 2.12
1951 3578 2.046285 CGACCCATCACCTTTGCCC 61.046 63.158 0.00 0.00 0.00 5.36
1954 3589 2.472695 TTCTCGACCCATCACCTTTG 57.527 50.000 0.00 0.00 0.00 2.77
2005 3648 3.863142 ACGTAGGTCTAGCATTTTCGT 57.137 42.857 0.00 0.00 0.00 3.85
2006 3649 3.722780 CGTACGTAGGTCTAGCATTTTCG 59.277 47.826 7.22 0.00 0.00 3.46
2007 3650 4.040376 CCGTACGTAGGTCTAGCATTTTC 58.960 47.826 15.21 0.00 0.00 2.29
2011 3654 0.950116 GCCGTACGTAGGTCTAGCAT 59.050 55.000 15.21 0.00 0.00 3.79
2012 3655 0.107508 AGCCGTACGTAGGTCTAGCA 60.108 55.000 15.21 0.00 0.00 3.49
2015 3658 3.987868 CGTAATAGCCGTACGTAGGTCTA 59.012 47.826 15.21 11.02 39.54 2.59
2016 3659 2.802816 CGTAATAGCCGTACGTAGGTCT 59.197 50.000 15.21 9.12 39.54 3.85
2024 3667 3.962481 CGTAAGTCACGTAATAGCCGTAC 59.038 47.826 0.00 0.00 45.82 3.67
2025 3668 4.195744 CGTAAGTCACGTAATAGCCGTA 57.804 45.455 0.00 0.00 45.82 4.02
2026 3669 3.056952 CGTAAGTCACGTAATAGCCGT 57.943 47.619 0.00 0.00 45.82 5.68
2042 3685 9.715121 AGTTAGATGGAATGAAAGTTTACGTAA 57.285 29.630 3.29 3.29 0.00 3.18
2044 3687 9.715121 TTAGTTAGATGGAATGAAAGTTTACGT 57.285 29.630 0.00 0.00 0.00 3.57
2053 3696 9.225682 AGGGAGTATTTAGTTAGATGGAATGAA 57.774 33.333 0.00 0.00 0.00 2.57
2054 3697 8.798975 AGGGAGTATTTAGTTAGATGGAATGA 57.201 34.615 0.00 0.00 0.00 2.57
2056 3699 7.237887 GGGAGGGAGTATTTAGTTAGATGGAAT 59.762 40.741 0.00 0.00 0.00 3.01
2057 3700 6.557633 GGGAGGGAGTATTTAGTTAGATGGAA 59.442 42.308 0.00 0.00 0.00 3.53
2058 3701 6.082707 GGGAGGGAGTATTTAGTTAGATGGA 58.917 44.000 0.00 0.00 0.00 3.41
2059 3702 6.014156 CAGGGAGGGAGTATTTAGTTAGATGG 60.014 46.154 0.00 0.00 0.00 3.51
2060 3703 6.782988 TCAGGGAGGGAGTATTTAGTTAGATG 59.217 42.308 0.00 0.00 0.00 2.90
2061 3704 6.935036 TCAGGGAGGGAGTATTTAGTTAGAT 58.065 40.000 0.00 0.00 0.00 1.98
2063 3706 7.511028 AGAATCAGGGAGGGAGTATTTAGTTAG 59.489 40.741 0.00 0.00 0.00 2.34
2064 3707 7.371043 AGAATCAGGGAGGGAGTATTTAGTTA 58.629 38.462 0.00 0.00 0.00 2.24
2065 3708 6.213525 AGAATCAGGGAGGGAGTATTTAGTT 58.786 40.000 0.00 0.00 0.00 2.24
2066 3709 5.793967 AGAATCAGGGAGGGAGTATTTAGT 58.206 41.667 0.00 0.00 0.00 2.24
2067 3710 5.841237 TGAGAATCAGGGAGGGAGTATTTAG 59.159 44.000 0.00 0.00 42.56 1.85
2068 3711 5.788430 TGAGAATCAGGGAGGGAGTATTTA 58.212 41.667 0.00 0.00 42.56 1.40
2069 3712 4.635473 TGAGAATCAGGGAGGGAGTATTT 58.365 43.478 0.00 0.00 42.56 1.40
2070 3713 4.286813 TGAGAATCAGGGAGGGAGTATT 57.713 45.455 0.00 0.00 42.56 1.89
2098 3741 1.003696 GATATTAGTGGAGGCTGGGGC 59.996 57.143 0.00 0.00 37.82 5.80
2099 3742 1.630878 GGATATTAGTGGAGGCTGGGG 59.369 57.143 0.00 0.00 0.00 4.96
2100 3743 2.338809 TGGATATTAGTGGAGGCTGGG 58.661 52.381 0.00 0.00 0.00 4.45
2101 3744 4.042062 TCATTGGATATTAGTGGAGGCTGG 59.958 45.833 0.00 0.00 0.00 4.85
2104 3747 6.205658 GTCTTTCATTGGATATTAGTGGAGGC 59.794 42.308 0.00 0.00 0.00 4.70
2105 3748 7.282585 TGTCTTTCATTGGATATTAGTGGAGG 58.717 38.462 0.00 0.00 0.00 4.30
2106 3749 8.616076 GTTGTCTTTCATTGGATATTAGTGGAG 58.384 37.037 0.00 0.00 0.00 3.86
2107 3750 7.556275 GGTTGTCTTTCATTGGATATTAGTGGA 59.444 37.037 0.00 0.00 0.00 4.02
2108 3751 7.339212 TGGTTGTCTTTCATTGGATATTAGTGG 59.661 37.037 0.00 0.00 0.00 4.00
2109 3752 8.279970 TGGTTGTCTTTCATTGGATATTAGTG 57.720 34.615 0.00 0.00 0.00 2.74
2110 3753 8.877864 TTGGTTGTCTTTCATTGGATATTAGT 57.122 30.769 0.00 0.00 0.00 2.24
2113 3756 8.814931 TGATTTGGTTGTCTTTCATTGGATATT 58.185 29.630 0.00 0.00 0.00 1.28
2114 3757 8.253113 GTGATTTGGTTGTCTTTCATTGGATAT 58.747 33.333 0.00 0.00 0.00 1.63
2115 3758 7.309744 GGTGATTTGGTTGTCTTTCATTGGATA 60.310 37.037 0.00 0.00 0.00 2.59
2116 3759 6.458210 GTGATTTGGTTGTCTTTCATTGGAT 58.542 36.000 0.00 0.00 0.00 3.41
2117 3760 5.221422 GGTGATTTGGTTGTCTTTCATTGGA 60.221 40.000 0.00 0.00 0.00 3.53
2118 3761 4.990426 GGTGATTTGGTTGTCTTTCATTGG 59.010 41.667 0.00 0.00 0.00 3.16
2119 3762 4.990426 GGGTGATTTGGTTGTCTTTCATTG 59.010 41.667 0.00 0.00 0.00 2.82
2120 3763 4.040339 GGGGTGATTTGGTTGTCTTTCATT 59.960 41.667 0.00 0.00 0.00 2.57
2121 3764 3.578282 GGGGTGATTTGGTTGTCTTTCAT 59.422 43.478 0.00 0.00 0.00 2.57
2122 3765 2.962421 GGGGTGATTTGGTTGTCTTTCA 59.038 45.455 0.00 0.00 0.00 2.69
2123 3766 2.962421 TGGGGTGATTTGGTTGTCTTTC 59.038 45.455 0.00 0.00 0.00 2.62
2124 3767 3.039252 TGGGGTGATTTGGTTGTCTTT 57.961 42.857 0.00 0.00 0.00 2.52
2125 3768 2.765689 TGGGGTGATTTGGTTGTCTT 57.234 45.000 0.00 0.00 0.00 3.01
2126 3769 2.999185 ATGGGGTGATTTGGTTGTCT 57.001 45.000 0.00 0.00 0.00 3.41
2127 3770 4.023291 ACATATGGGGTGATTTGGTTGTC 58.977 43.478 7.80 0.00 0.00 3.18
2128 3771 4.059773 ACATATGGGGTGATTTGGTTGT 57.940 40.909 7.80 0.00 0.00 3.32
2129 3772 5.068987 CCTTACATATGGGGTGATTTGGTTG 59.931 44.000 7.80 0.00 0.00 3.77
2130 3773 5.208121 CCTTACATATGGGGTGATTTGGTT 58.792 41.667 7.80 0.00 0.00 3.67
2131 3774 4.231890 ACCTTACATATGGGGTGATTTGGT 59.768 41.667 7.80 0.00 0.00 3.67
2132 3775 4.803452 ACCTTACATATGGGGTGATTTGG 58.197 43.478 7.80 0.00 0.00 3.28
2133 3776 5.468746 CGTACCTTACATATGGGGTGATTTG 59.531 44.000 20.26 7.68 33.74 2.32
2134 3777 5.131475 ACGTACCTTACATATGGGGTGATTT 59.869 40.000 20.26 6.13 33.74 2.17
2135 3778 4.657039 ACGTACCTTACATATGGGGTGATT 59.343 41.667 20.26 7.37 33.74 2.57
2136 3779 4.228824 ACGTACCTTACATATGGGGTGAT 58.771 43.478 20.26 8.46 33.74 3.06
2137 3780 3.645434 ACGTACCTTACATATGGGGTGA 58.355 45.455 20.26 7.93 33.74 4.02
2138 3781 5.534207 TTACGTACCTTACATATGGGGTG 57.466 43.478 20.26 11.42 33.74 4.61
2139 3782 6.558488 TTTTACGTACCTTACATATGGGGT 57.442 37.500 17.19 17.19 36.02 4.95
2140 3783 6.260714 GGTTTTTACGTACCTTACATATGGGG 59.739 42.308 7.80 8.65 0.00 4.96
2141 3784 7.049754 AGGTTTTTACGTACCTTACATATGGG 58.950 38.462 7.80 1.15 42.01 4.00
2151 3794 3.876320 TGCGAAAAGGTTTTTACGTACCT 59.124 39.130 1.73 1.73 46.58 3.08
2152 3795 4.208074 TGCGAAAAGGTTTTTACGTACC 57.792 40.909 0.00 0.00 34.54 3.34
2153 3796 5.170092 CACTTGCGAAAAGGTTTTTACGTAC 59.830 40.000 0.00 0.00 0.00 3.67
2154 3797 5.163774 ACACTTGCGAAAAGGTTTTTACGTA 60.164 36.000 0.00 0.00 0.00 3.57
2155 3798 4.099824 CACTTGCGAAAAGGTTTTTACGT 58.900 39.130 0.00 0.00 0.00 3.57
2156 3799 4.099824 ACACTTGCGAAAAGGTTTTTACG 58.900 39.130 3.70 0.00 0.00 3.18
2157 3800 5.172591 GCTACACTTGCGAAAAGGTTTTTAC 59.827 40.000 3.70 0.00 0.00 2.01
2158 3801 5.163642 TGCTACACTTGCGAAAAGGTTTTTA 60.164 36.000 3.70 0.00 0.00 1.52
2159 3802 4.109766 GCTACACTTGCGAAAAGGTTTTT 58.890 39.130 3.70 0.00 0.00 1.94
2160 3803 3.129638 TGCTACACTTGCGAAAAGGTTTT 59.870 39.130 3.70 0.00 0.00 2.43
2161 3804 2.685897 TGCTACACTTGCGAAAAGGTTT 59.314 40.909 3.70 0.00 0.00 3.27
2162 3805 2.294074 TGCTACACTTGCGAAAAGGTT 58.706 42.857 3.70 0.00 0.00 3.50
2163 3806 1.961793 TGCTACACTTGCGAAAAGGT 58.038 45.000 3.70 0.00 0.00 3.50
2164 3807 3.236816 CAATGCTACACTTGCGAAAAGG 58.763 45.455 3.70 0.00 0.00 3.11
2165 3808 2.658325 GCAATGCTACACTTGCGAAAAG 59.342 45.455 0.00 0.00 38.47 2.27
2166 3809 2.660490 GCAATGCTACACTTGCGAAAA 58.340 42.857 0.00 0.00 38.47 2.29
2167 3810 2.330231 GCAATGCTACACTTGCGAAA 57.670 45.000 0.00 0.00 38.47 3.46
2171 3814 3.565905 AAAGAGCAATGCTACACTTGC 57.434 42.857 8.12 0.00 46.32 4.01
2172 3815 5.766222 AGAAAAAGAGCAATGCTACACTTG 58.234 37.500 8.12 0.00 39.88 3.16
2173 3816 6.396829 AAGAAAAAGAGCAATGCTACACTT 57.603 33.333 8.12 4.64 39.88 3.16
2174 3817 7.362401 CCATAAGAAAAAGAGCAATGCTACACT 60.362 37.037 8.12 0.00 39.88 3.55
2175 3818 6.749118 CCATAAGAAAAAGAGCAATGCTACAC 59.251 38.462 8.12 0.00 39.88 2.90
2176 3819 6.658816 TCCATAAGAAAAAGAGCAATGCTACA 59.341 34.615 8.12 0.00 39.88 2.74
2177 3820 7.088589 TCCATAAGAAAAAGAGCAATGCTAC 57.911 36.000 8.12 1.89 39.88 3.58
2178 3821 7.886629 ATCCATAAGAAAAAGAGCAATGCTA 57.113 32.000 8.12 0.00 39.88 3.49
2179 3822 6.786967 ATCCATAAGAAAAAGAGCAATGCT 57.213 33.333 7.79 7.79 43.88 3.79
2180 3823 6.197842 CGAATCCATAAGAAAAAGAGCAATGC 59.802 38.462 0.00 0.00 0.00 3.56
2181 3824 7.219535 CACGAATCCATAAGAAAAAGAGCAATG 59.780 37.037 0.00 0.00 0.00 2.82
2182 3825 7.094205 ACACGAATCCATAAGAAAAAGAGCAAT 60.094 33.333 0.00 0.00 0.00 3.56
2183 3826 6.206634 ACACGAATCCATAAGAAAAAGAGCAA 59.793 34.615 0.00 0.00 0.00 3.91
2184 3827 5.705441 ACACGAATCCATAAGAAAAAGAGCA 59.295 36.000 0.00 0.00 0.00 4.26
2185 3828 6.183309 ACACGAATCCATAAGAAAAAGAGC 57.817 37.500 0.00 0.00 0.00 4.09
2186 3829 8.480643 ACTACACGAATCCATAAGAAAAAGAG 57.519 34.615 0.00 0.00 0.00 2.85
2187 3830 8.092068 TGACTACACGAATCCATAAGAAAAAGA 58.908 33.333 0.00 0.00 0.00 2.52
2188 3831 8.251750 TGACTACACGAATCCATAAGAAAAAG 57.748 34.615 0.00 0.00 0.00 2.27
2189 3832 8.786826 ATGACTACACGAATCCATAAGAAAAA 57.213 30.769 0.00 0.00 0.00 1.94
2190 3833 9.878667 TTATGACTACACGAATCCATAAGAAAA 57.121 29.630 0.00 0.00 0.00 2.29
2191 3834 9.878667 TTTATGACTACACGAATCCATAAGAAA 57.121 29.630 0.00 0.00 31.03 2.52
2192 3835 9.529325 CTTTATGACTACACGAATCCATAAGAA 57.471 33.333 0.00 0.00 31.03 2.52
2193 3836 8.909923 TCTTTATGACTACACGAATCCATAAGA 58.090 33.333 0.00 0.00 31.03 2.10
2194 3837 9.186323 CTCTTTATGACTACACGAATCCATAAG 57.814 37.037 0.00 0.00 31.03 1.73
2195 3838 8.141909 CCTCTTTATGACTACACGAATCCATAA 58.858 37.037 0.00 0.00 0.00 1.90
2196 3839 7.255836 CCCTCTTTATGACTACACGAATCCATA 60.256 40.741 0.00 0.00 0.00 2.74
2197 3840 6.463049 CCCTCTTTATGACTACACGAATCCAT 60.463 42.308 0.00 0.00 0.00 3.41
2201 3844 5.163437 GGTCCCTCTTTATGACTACACGAAT 60.163 44.000 0.00 0.00 0.00 3.34
2212 3855 6.440965 CCCTAGGTATAAGGTCCCTCTTTATG 59.559 46.154 8.29 0.00 32.07 1.90
2215 3858 4.488805 TCCCTAGGTATAAGGTCCCTCTTT 59.511 45.833 8.29 0.00 31.70 2.52
2221 3864 3.570540 ACGTTCCCTAGGTATAAGGTCC 58.429 50.000 8.29 0.00 31.70 4.46
2227 3870 3.879295 CTGACGAACGTTCCCTAGGTATA 59.121 47.826 22.07 6.22 0.00 1.47
2236 3879 0.109226 CCTCCTCTGACGAACGTTCC 60.109 60.000 22.07 9.95 0.00 3.62
2265 3908 1.282248 AACTGTCATGCGACCGTTCG 61.282 55.000 0.00 0.00 43.57 3.95
2268 3911 0.033504 AGAAACTGTCATGCGACCGT 59.966 50.000 0.00 0.00 40.86 4.83
2279 3955 2.146342 CATGTCGCCTGAAGAAACTGT 58.854 47.619 0.00 0.00 0.00 3.55
2302 3983 4.756084 AACGAAATTGCCTTCTCAGAAG 57.244 40.909 7.53 7.53 0.00 2.85
2329 4011 5.446473 GCGAGATCAAATGACAACAAGTAGG 60.446 44.000 0.00 0.00 0.00 3.18
2333 4015 4.675190 AGCGAGATCAAATGACAACAAG 57.325 40.909 0.00 0.00 0.00 3.16
2334 4016 5.437289 AAAGCGAGATCAAATGACAACAA 57.563 34.783 0.00 0.00 0.00 2.83
2335 4017 5.437289 AAAAGCGAGATCAAATGACAACA 57.563 34.783 0.00 0.00 0.00 3.33
2336 4018 5.914635 TGAAAAAGCGAGATCAAATGACAAC 59.085 36.000 0.00 0.00 0.00 3.32
2337 4019 5.914635 GTGAAAAAGCGAGATCAAATGACAA 59.085 36.000 0.00 0.00 0.00 3.18
2338 4020 5.239306 AGTGAAAAAGCGAGATCAAATGACA 59.761 36.000 0.00 0.00 0.00 3.58
2342 4024 5.947228 TGAGTGAAAAAGCGAGATCAAAT 57.053 34.783 0.00 0.00 0.00 2.32
2363 4046 8.026341 AGCGAATCATATATGATGACTGTTTG 57.974 34.615 25.37 15.30 46.22 2.93
2368 4051 5.583854 GGCAAGCGAATCATATATGATGACT 59.416 40.000 25.37 19.45 46.22 3.41
2382 4065 1.077716 GTAGGGGTGGCAAGCGAAT 60.078 57.895 0.00 0.00 0.00 3.34
2406 4090 1.785430 GTAATGGTAGCTAGCGAACGC 59.215 52.381 17.59 11.31 42.33 4.84
2452 4168 3.270877 ACGAAACTCAAAAGCTCTGTGT 58.729 40.909 0.00 0.00 0.00 3.72
2453 4169 3.303395 GGACGAAACTCAAAAGCTCTGTG 60.303 47.826 0.00 0.00 0.00 3.66
2464 4180 2.416747 CAGATGCAAGGACGAAACTCA 58.583 47.619 0.00 0.00 0.00 3.41
2485 4201 0.591170 GAACACACAACATGGACCGG 59.409 55.000 0.00 0.00 0.00 5.28
2488 4204 6.398918 AGATAGTAGAACACACAACATGGAC 58.601 40.000 0.00 0.00 0.00 4.02
2510 4226 1.440618 TGTTGGGGGCAGTTTAGAGA 58.559 50.000 0.00 0.00 0.00 3.10
2581 4330 9.492730 AATTAATTAATGGTGACCAATTCTCCT 57.507 29.630 9.06 0.00 38.53 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.