Multiple sequence alignment - TraesCS3A01G424000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G424000 chr3A 100.000 3427 0 0 1 3427 666638113 666634687 0.000000e+00 6329.0
1 TraesCS3A01G424000 chr3A 82.787 244 23 12 1491 1724 323062798 323062564 2.090000e-47 200.0
2 TraesCS3A01G424000 chr3A 81.967 244 25 12 1491 1724 401135961 401136195 4.510000e-44 189.0
3 TraesCS3A01G424000 chr3D 92.065 1903 102 21 720 2591 531849103 531847219 0.000000e+00 2632.0
4 TraesCS3A01G424000 chr3D 89.560 546 38 11 211 742 531849649 531849109 0.000000e+00 675.0
5 TraesCS3A01G424000 chr3D 88.043 276 27 3 3152 3427 531846447 531846178 4.270000e-84 322.0
6 TraesCS3A01G424000 chr3D 91.457 199 14 2 2745 2942 531846845 531846649 1.570000e-68 270.0
7 TraesCS3A01G424000 chr3D 92.222 180 14 0 2932 3111 531846628 531846449 4.390000e-64 255.0
8 TraesCS3A01G424000 chr3D 92.079 101 7 1 2586 2685 531847102 531847002 1.280000e-29 141.0
9 TraesCS3A01G424000 chr3D 90.741 54 5 0 1138 1191 531706931 531706878 4.740000e-09 73.1
10 TraesCS3A01G424000 chr3B 89.314 1909 110 41 730 2599 703595612 703593759 0.000000e+00 2309.0
11 TraesCS3A01G424000 chr3B 86.667 450 41 6 217 648 703596125 703595677 6.650000e-132 481.0
12 TraesCS3A01G424000 chr3B 86.691 278 24 6 3152 3427 703592798 703592532 2.590000e-76 296.0
13 TraesCS3A01G424000 chr3B 85.987 157 22 0 1900 2056 703331096 703330940 5.880000e-38 169.0
14 TraesCS3A01G424000 chr3B 90.741 54 5 0 1138 1191 703333285 703333232 4.740000e-09 73.1
15 TraesCS3A01G424000 chr2B 96.903 226 7 0 1 226 699936429 699936204 2.500000e-101 379.0
16 TraesCS3A01G424000 chr2B 96.460 226 8 0 1 226 562747133 562746908 1.160000e-99 374.0
17 TraesCS3A01G424000 chr5B 96.087 230 7 2 1 230 122169714 122169941 1.160000e-99 374.0
18 TraesCS3A01G424000 chr5B 95.690 232 8 2 1 232 63788891 63788662 4.180000e-99 372.0
19 TraesCS3A01G424000 chr5B 94.937 237 9 3 1 234 221373117 221373353 5.400000e-98 368.0
20 TraesCS3A01G424000 chr1A 97.696 217 5 0 1 217 171695657 171695873 1.160000e-99 374.0
21 TraesCS3A01G424000 chr1A 96.053 228 8 1 1 228 232689547 232689773 1.500000e-98 370.0
22 TraesCS3A01G424000 chr7A 95.690 232 7 3 1 231 7695812 7696041 1.500000e-98 370.0
23 TraesCS3A01G424000 chr4B 94.538 238 11 1 1 238 100901570 100901805 1.940000e-97 366.0
24 TraesCS3A01G424000 chr5D 82.099 324 39 12 1411 1724 27232161 27231847 3.390000e-65 259.0
25 TraesCS3A01G424000 chr6B 80.919 283 28 16 1491 1756 149740309 149740036 2.090000e-47 200.0
26 TraesCS3A01G424000 chr6B 76.991 226 43 4 3205 3427 702998318 702998537 1.670000e-23 121.0
27 TraesCS3A01G424000 chr4A 82.377 244 24 12 1491 1724 427701728 427701962 9.700000e-46 195.0
28 TraesCS3A01G424000 chr4D 81.707 246 23 14 1491 1724 457300678 457300443 5.840000e-43 185.0
29 TraesCS3A01G424000 chrUn 81.557 244 25 13 1491 1724 296259332 296259099 2.100000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G424000 chr3A 666634687 666638113 3426 True 6329.000000 6329 100.000000 1 3427 1 chr3A.!!$R2 3426
1 TraesCS3A01G424000 chr3D 531846178 531849649 3471 True 715.833333 2632 90.904333 211 3427 6 chr3D.!!$R2 3216
2 TraesCS3A01G424000 chr3B 703592532 703596125 3593 True 1028.666667 2309 87.557333 217 3427 3 chr3B.!!$R2 3210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.108585 ATAACCGCATCGAGGGCATT 59.891 50.0 11.76 7.78 0.0 3.56 F
801 856 0.614697 AAAAGGGAATCGGGCCTTGG 60.615 55.0 0.84 0.00 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1549 0.454285 CATTACAAACACGGCGCCAG 60.454 55.0 28.98 20.85 0.0 4.85 R
2670 2901 0.673437 CAAAGTCCAAACCACCGCAT 59.327 50.0 0.00 0.00 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.649331 CGTAGTCGGACCTTGATTGT 57.351 50.000 4.14 0.00 0.00 2.71
26 27 3.770263 CGTAGTCGGACCTTGATTGTA 57.230 47.619 4.14 0.00 0.00 2.41
27 28 4.303086 CGTAGTCGGACCTTGATTGTAT 57.697 45.455 4.14 0.00 0.00 2.29
28 29 4.288531 CGTAGTCGGACCTTGATTGTATC 58.711 47.826 4.14 0.00 0.00 2.24
29 30 4.036498 CGTAGTCGGACCTTGATTGTATCT 59.964 45.833 4.14 0.00 0.00 1.98
30 31 4.392921 AGTCGGACCTTGATTGTATCTG 57.607 45.455 4.14 0.00 0.00 2.90
31 32 3.133003 AGTCGGACCTTGATTGTATCTGG 59.867 47.826 4.14 0.00 0.00 3.86
32 33 3.132289 GTCGGACCTTGATTGTATCTGGA 59.868 47.826 0.00 0.00 0.00 3.86
33 34 3.967326 TCGGACCTTGATTGTATCTGGAT 59.033 43.478 0.00 0.00 0.00 3.41
34 35 4.060900 CGGACCTTGATTGTATCTGGATG 58.939 47.826 0.00 0.00 0.00 3.51
35 36 4.202253 CGGACCTTGATTGTATCTGGATGA 60.202 45.833 0.00 0.00 0.00 2.92
36 37 5.512060 CGGACCTTGATTGTATCTGGATGAT 60.512 44.000 0.00 0.00 39.11 2.45
37 38 5.704515 GGACCTTGATTGTATCTGGATGATG 59.295 44.000 0.00 0.00 36.65 3.07
38 39 6.257994 ACCTTGATTGTATCTGGATGATGT 57.742 37.500 0.00 0.00 36.65 3.06
39 40 7.379059 ACCTTGATTGTATCTGGATGATGTA 57.621 36.000 0.00 0.00 36.65 2.29
40 41 7.805163 ACCTTGATTGTATCTGGATGATGTAA 58.195 34.615 0.00 0.00 36.65 2.41
41 42 8.443176 ACCTTGATTGTATCTGGATGATGTAAT 58.557 33.333 0.00 0.00 36.65 1.89
42 43 9.948964 CCTTGATTGTATCTGGATGATGTAATA 57.051 33.333 0.00 0.00 36.65 0.98
68 69 9.897744 ACTTTATTCATGTATTTGTGTGAAGTG 57.102 29.630 0.00 0.00 34.45 3.16
69 70 9.345517 CTTTATTCATGTATTTGTGTGAAGTGG 57.654 33.333 0.00 0.00 34.45 4.00
70 71 4.764679 TCATGTATTTGTGTGAAGTGGC 57.235 40.909 0.00 0.00 0.00 5.01
71 72 3.188254 TCATGTATTTGTGTGAAGTGGCG 59.812 43.478 0.00 0.00 0.00 5.69
72 73 2.839975 TGTATTTGTGTGAAGTGGCGA 58.160 42.857 0.00 0.00 0.00 5.54
73 74 3.407698 TGTATTTGTGTGAAGTGGCGAT 58.592 40.909 0.00 0.00 0.00 4.58
74 75 3.818210 TGTATTTGTGTGAAGTGGCGATT 59.182 39.130 0.00 0.00 0.00 3.34
75 76 2.772568 TTTGTGTGAAGTGGCGATTG 57.227 45.000 0.00 0.00 0.00 2.67
76 77 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
77 78 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
78 79 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
79 80 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
80 81 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
91 92 5.924475 GCGATTGTAAGCCAACTATGTAT 57.076 39.130 0.00 0.00 35.44 2.29
92 93 5.916969 GCGATTGTAAGCCAACTATGTATC 58.083 41.667 0.00 0.00 35.44 2.24
93 94 5.696724 GCGATTGTAAGCCAACTATGTATCT 59.303 40.000 0.00 0.00 35.44 1.98
94 95 6.202954 GCGATTGTAAGCCAACTATGTATCTT 59.797 38.462 0.00 0.00 35.44 2.40
95 96 7.254795 GCGATTGTAAGCCAACTATGTATCTTT 60.255 37.037 0.00 0.00 35.44 2.52
96 97 8.612619 CGATTGTAAGCCAACTATGTATCTTTT 58.387 33.333 0.00 0.00 35.44 2.27
99 100 8.276252 TGTAAGCCAACTATGTATCTTTTTCC 57.724 34.615 0.00 0.00 0.00 3.13
100 101 6.775594 AAGCCAACTATGTATCTTTTTCCC 57.224 37.500 0.00 0.00 0.00 3.97
101 102 6.079712 AGCCAACTATGTATCTTTTTCCCT 57.920 37.500 0.00 0.00 0.00 4.20
102 103 6.494059 AGCCAACTATGTATCTTTTTCCCTT 58.506 36.000 0.00 0.00 0.00 3.95
103 104 7.639378 AGCCAACTATGTATCTTTTTCCCTTA 58.361 34.615 0.00 0.00 0.00 2.69
104 105 8.282256 AGCCAACTATGTATCTTTTTCCCTTAT 58.718 33.333 0.00 0.00 0.00 1.73
105 106 8.352942 GCCAACTATGTATCTTTTTCCCTTATG 58.647 37.037 0.00 0.00 0.00 1.90
106 107 9.408648 CCAACTATGTATCTTTTTCCCTTATGT 57.591 33.333 0.00 0.00 0.00 2.29
116 117 8.760980 TCTTTTTCCCTTATGTATTACATGGG 57.239 34.615 19.48 19.48 41.04 4.00
117 118 8.340757 TCTTTTTCCCTTATGTATTACATGGGT 58.659 33.333 22.47 3.38 40.71 4.51
118 119 8.903059 TTTTTCCCTTATGTATTACATGGGTT 57.097 30.769 22.47 3.08 40.71 4.11
119 120 7.889873 TTTCCCTTATGTATTACATGGGTTG 57.110 36.000 22.47 12.44 40.71 3.77
120 121 6.584471 TCCCTTATGTATTACATGGGTTGT 57.416 37.500 22.47 1.91 40.71 3.32
121 122 6.361433 TCCCTTATGTATTACATGGGTTGTG 58.639 40.000 22.47 11.74 40.71 3.33
122 123 6.069323 TCCCTTATGTATTACATGGGTTGTGT 60.069 38.462 22.47 0.74 40.71 3.72
123 124 6.039270 CCCTTATGTATTACATGGGTTGTGTG 59.961 42.308 17.68 4.59 39.53 3.82
124 125 6.826231 CCTTATGTATTACATGGGTTGTGTGA 59.174 38.462 17.68 0.00 39.53 3.58
125 126 7.338196 CCTTATGTATTACATGGGTTGTGTGAA 59.662 37.037 17.68 1.51 39.53 3.18
126 127 6.757897 ATGTATTACATGGGTTGTGTGAAG 57.242 37.500 8.51 0.00 37.45 3.02
127 128 5.870706 TGTATTACATGGGTTGTGTGAAGA 58.129 37.500 0.00 0.00 39.48 2.87
128 129 6.480763 TGTATTACATGGGTTGTGTGAAGAT 58.519 36.000 0.00 0.00 39.48 2.40
129 130 6.945435 TGTATTACATGGGTTGTGTGAAGATT 59.055 34.615 0.00 0.00 39.48 2.40
130 131 8.103935 TGTATTACATGGGTTGTGTGAAGATTA 58.896 33.333 0.00 0.00 39.48 1.75
131 132 6.811253 TTACATGGGTTGTGTGAAGATTAC 57.189 37.500 0.00 0.00 39.48 1.89
132 133 4.079253 ACATGGGTTGTGTGAAGATTACC 58.921 43.478 0.00 0.00 37.11 2.85
133 134 4.202567 ACATGGGTTGTGTGAAGATTACCT 60.203 41.667 0.00 0.00 37.11 3.08
134 135 4.015872 TGGGTTGTGTGAAGATTACCTC 57.984 45.455 0.00 0.00 0.00 3.85
135 136 3.392947 TGGGTTGTGTGAAGATTACCTCA 59.607 43.478 0.00 0.00 0.00 3.86
136 137 3.751698 GGGTTGTGTGAAGATTACCTCAC 59.248 47.826 0.00 0.00 0.00 3.51
137 138 4.505039 GGGTTGTGTGAAGATTACCTCACT 60.505 45.833 4.07 0.00 34.51 3.41
138 139 5.063880 GGTTGTGTGAAGATTACCTCACTT 58.936 41.667 4.07 0.00 34.51 3.16
139 140 5.049405 GGTTGTGTGAAGATTACCTCACTTG 60.049 44.000 4.07 0.00 34.51 3.16
140 141 4.065088 TGTGTGAAGATTACCTCACTTGC 58.935 43.478 4.07 0.00 34.51 4.01
141 142 3.123621 GTGTGAAGATTACCTCACTTGCG 59.876 47.826 4.07 0.00 34.51 4.85
142 143 3.006430 TGTGAAGATTACCTCACTTGCGA 59.994 43.478 4.07 0.00 34.51 5.10
143 144 3.368236 GTGAAGATTACCTCACTTGCGAC 59.632 47.826 0.00 0.00 0.00 5.19
144 145 3.006430 TGAAGATTACCTCACTTGCGACA 59.994 43.478 0.00 0.00 0.00 4.35
145 146 3.895232 AGATTACCTCACTTGCGACAT 57.105 42.857 0.00 0.00 0.00 3.06
146 147 4.207891 AGATTACCTCACTTGCGACATT 57.792 40.909 0.00 0.00 0.00 2.71
147 148 3.935203 AGATTACCTCACTTGCGACATTG 59.065 43.478 0.00 0.00 0.00 2.82
148 149 1.438651 TACCTCACTTGCGACATTGC 58.561 50.000 0.00 0.00 0.00 3.56
149 150 0.250467 ACCTCACTTGCGACATTGCT 60.250 50.000 0.00 0.00 35.36 3.91
150 151 0.877071 CCTCACTTGCGACATTGCTT 59.123 50.000 0.00 0.00 35.36 3.91
151 152 1.267806 CCTCACTTGCGACATTGCTTT 59.732 47.619 0.00 0.00 35.36 3.51
152 153 2.578495 CTCACTTGCGACATTGCTTTC 58.422 47.619 0.00 0.00 35.36 2.62
153 154 1.946081 TCACTTGCGACATTGCTTTCA 59.054 42.857 0.00 0.00 35.36 2.69
154 155 2.357323 TCACTTGCGACATTGCTTTCAA 59.643 40.909 0.00 0.00 36.51 2.69
155 156 3.004629 TCACTTGCGACATTGCTTTCAAT 59.995 39.130 0.00 0.00 43.31 2.57
165 166 2.276472 TGCTTTCAATGCGGTTATGC 57.724 45.000 0.00 0.00 0.00 3.14
166 167 1.135141 TGCTTTCAATGCGGTTATGCC 60.135 47.619 0.00 0.00 0.00 4.40
167 168 1.134946 GCTTTCAATGCGGTTATGCCT 59.865 47.619 0.00 0.00 34.25 4.75
168 169 2.796032 GCTTTCAATGCGGTTATGCCTC 60.796 50.000 0.00 0.00 34.25 4.70
169 170 2.418368 TTCAATGCGGTTATGCCTCT 57.582 45.000 0.00 0.00 34.25 3.69
170 171 3.552132 TTCAATGCGGTTATGCCTCTA 57.448 42.857 0.00 0.00 34.25 2.43
171 172 3.552132 TCAATGCGGTTATGCCTCTAA 57.448 42.857 0.00 0.00 34.25 2.10
172 173 3.466836 TCAATGCGGTTATGCCTCTAAG 58.533 45.455 0.00 0.00 34.25 2.18
173 174 3.118408 TCAATGCGGTTATGCCTCTAAGT 60.118 43.478 0.00 0.00 34.25 2.24
174 175 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
175 176 1.828595 TGCGGTTATGCCTCTAAGTCA 59.171 47.619 0.00 0.00 34.25 3.41
176 177 2.434336 TGCGGTTATGCCTCTAAGTCAT 59.566 45.455 0.00 0.00 34.25 3.06
177 178 2.802816 GCGGTTATGCCTCTAAGTCATG 59.197 50.000 0.00 0.00 34.25 3.07
178 179 2.802816 CGGTTATGCCTCTAAGTCATGC 59.197 50.000 0.00 0.00 34.25 4.06
179 180 3.493350 CGGTTATGCCTCTAAGTCATGCT 60.493 47.826 0.00 0.00 34.25 3.79
180 181 4.455606 GGTTATGCCTCTAAGTCATGCTT 58.544 43.478 7.40 7.40 41.05 3.91
181 182 4.513318 GGTTATGCCTCTAAGTCATGCTTC 59.487 45.833 5.78 0.00 38.57 3.86
182 183 2.299993 TGCCTCTAAGTCATGCTTCG 57.700 50.000 5.78 1.52 38.57 3.79
183 184 1.824852 TGCCTCTAAGTCATGCTTCGA 59.175 47.619 5.78 5.22 38.57 3.71
184 185 2.197577 GCCTCTAAGTCATGCTTCGAC 58.802 52.381 5.78 0.00 38.57 4.20
185 186 2.417379 GCCTCTAAGTCATGCTTCGACA 60.417 50.000 5.78 0.00 38.57 4.35
186 187 3.182967 CCTCTAAGTCATGCTTCGACAC 58.817 50.000 5.78 0.00 38.57 3.67
187 188 2.848887 CTCTAAGTCATGCTTCGACACG 59.151 50.000 5.78 0.00 38.57 4.49
188 189 2.228103 TCTAAGTCATGCTTCGACACGT 59.772 45.455 5.78 0.00 38.57 4.49
189 190 1.139989 AAGTCATGCTTCGACACGTG 58.860 50.000 15.48 15.48 35.77 4.49
190 191 0.667487 AGTCATGCTTCGACACGTGG 60.667 55.000 21.57 2.57 35.77 4.94
191 192 1.374125 TCATGCTTCGACACGTGGG 60.374 57.895 21.57 11.55 0.00 4.61
192 193 1.374125 CATGCTTCGACACGTGGGA 60.374 57.895 21.57 13.88 0.00 4.37
193 194 1.079819 ATGCTTCGACACGTGGGAG 60.080 57.895 21.57 8.15 0.00 4.30
194 195 1.532604 ATGCTTCGACACGTGGGAGA 61.533 55.000 21.57 12.82 0.00 3.71
195 196 1.215647 GCTTCGACACGTGGGAGAT 59.784 57.895 21.57 0.00 0.00 2.75
196 197 0.454600 GCTTCGACACGTGGGAGATA 59.545 55.000 21.57 1.34 0.00 1.98
197 198 1.067212 GCTTCGACACGTGGGAGATAT 59.933 52.381 21.57 0.00 0.00 1.63
198 199 2.292569 GCTTCGACACGTGGGAGATATA 59.707 50.000 21.57 0.63 0.00 0.86
199 200 3.243301 GCTTCGACACGTGGGAGATATAA 60.243 47.826 21.57 0.00 0.00 0.98
200 201 3.976793 TCGACACGTGGGAGATATAAC 57.023 47.619 21.57 0.00 0.00 1.89
201 202 2.620115 TCGACACGTGGGAGATATAACC 59.380 50.000 21.57 0.00 0.00 2.85
202 203 2.603892 CGACACGTGGGAGATATAACCG 60.604 54.545 21.57 2.07 0.00 4.44
203 204 1.068127 ACACGTGGGAGATATAACCGC 59.932 52.381 21.57 0.00 0.00 5.68
204 205 1.067974 CACGTGGGAGATATAACCGCA 59.932 52.381 7.95 0.00 34.52 5.69
205 206 1.968493 ACGTGGGAGATATAACCGCAT 59.032 47.619 0.00 0.00 34.52 4.73
206 207 2.029290 ACGTGGGAGATATAACCGCATC 60.029 50.000 0.00 0.00 34.52 3.91
207 208 2.607187 GTGGGAGATATAACCGCATCG 58.393 52.381 0.00 0.00 34.96 3.84
208 209 2.230508 GTGGGAGATATAACCGCATCGA 59.769 50.000 0.00 0.00 34.96 3.59
209 210 2.492088 TGGGAGATATAACCGCATCGAG 59.508 50.000 0.00 0.00 0.00 4.04
210 211 2.159226 GGGAGATATAACCGCATCGAGG 60.159 54.545 0.00 0.00 0.00 4.63
211 212 2.159226 GGAGATATAACCGCATCGAGGG 60.159 54.545 0.00 0.00 0.00 4.30
212 213 1.204941 AGATATAACCGCATCGAGGGC 59.795 52.381 0.00 0.00 0.00 5.19
213 214 0.973632 ATATAACCGCATCGAGGGCA 59.026 50.000 11.76 0.00 0.00 5.36
214 215 0.973632 TATAACCGCATCGAGGGCAT 59.026 50.000 11.76 3.64 0.00 4.40
215 216 0.108585 ATAACCGCATCGAGGGCATT 59.891 50.000 11.76 7.78 0.00 3.56
216 217 0.753867 TAACCGCATCGAGGGCATTA 59.246 50.000 11.76 6.96 0.00 1.90
217 218 0.108585 AACCGCATCGAGGGCATTAT 59.891 50.000 11.76 0.00 0.00 1.28
218 219 0.973632 ACCGCATCGAGGGCATTATA 59.026 50.000 11.76 0.00 0.00 0.98
231 232 3.988517 GGGCATTATAGCTTCGTGTAGAC 59.011 47.826 0.00 0.00 34.17 2.59
233 234 5.230942 GGCATTATAGCTTCGTGTAGACAT 58.769 41.667 0.00 0.00 34.17 3.06
258 259 2.185867 GATAAGGCGTGGCGGACA 59.814 61.111 0.00 0.00 0.00 4.02
309 310 1.153127 TGTCCGGTTGCGAGGTTTT 60.153 52.632 0.00 0.00 0.00 2.43
318 319 2.539338 GCGAGGTTTTGGACACGCA 61.539 57.895 0.00 0.00 46.64 5.24
360 361 2.093869 GGTCACCGTGTTGGATAGCTTA 60.094 50.000 0.00 0.00 42.00 3.09
440 441 2.481441 TGCCCTGATACATGAGTTCCT 58.519 47.619 0.00 0.00 0.00 3.36
583 601 6.705863 AAATAAAAACAAAATGCCTTGGCA 57.294 29.167 17.19 17.19 0.00 4.92
584 602 5.687770 ATAAAAACAAAATGCCTTGGCAC 57.312 34.783 17.22 0.00 0.00 5.01
586 604 2.934886 AACAAAATGCCTTGGCACAT 57.065 40.000 17.22 6.22 39.30 3.21
626 644 9.830294 AAAATTCTTTCAAAACAAGCAAAGAAG 57.170 25.926 10.49 0.00 44.18 2.85
651 669 7.693951 AGAATCTCGCAAAAGAATAAATTCGTG 59.306 33.333 0.00 0.00 41.56 4.35
680 698 5.948742 TCCAACTTTTTGTTTGAAGGGAT 57.051 34.783 0.00 0.00 36.63 3.85
682 700 7.049799 TCCAACTTTTTGTTTGAAGGGATAG 57.950 36.000 0.00 0.00 36.63 2.08
694 712 6.850752 TTGAAGGGATAGGAAATTCCAAAC 57.149 37.500 15.21 4.49 39.61 2.93
696 714 6.502138 TGAAGGGATAGGAAATTCCAAACAT 58.498 36.000 15.21 1.70 39.61 2.71
698 716 7.457535 TGAAGGGATAGGAAATTCCAAACATTT 59.542 33.333 15.21 1.97 39.61 2.32
700 718 8.218423 AGGGATAGGAAATTCCAAACATTTTT 57.782 30.769 15.21 0.00 39.61 1.94
701 719 8.321353 AGGGATAGGAAATTCCAAACATTTTTC 58.679 33.333 15.21 0.00 39.61 2.29
727 748 5.192121 TCCCCGGGAAGACATTAGAATAAAA 59.808 40.000 26.32 0.00 0.00 1.52
733 754 9.595823 CGGGAAGACATTAGAATAAAAAGAGTA 57.404 33.333 0.00 0.00 0.00 2.59
801 856 0.614697 AAAAGGGAATCGGGCCTTGG 60.615 55.000 0.84 0.00 0.00 3.61
835 890 1.194547 CAAAGTACGCGCACTTCACAT 59.805 47.619 24.08 6.75 37.78 3.21
848 903 1.075979 TTCACATGCGATCCGTGTCG 61.076 55.000 6.19 2.69 41.68 4.35
857 912 3.971453 ATCCGTGTCGCGAGCAGTG 62.971 63.158 10.24 6.48 44.77 3.66
1021 1076 1.816224 GTCGTCTTCTTCCTCTGCTCT 59.184 52.381 0.00 0.00 0.00 4.09
1192 1250 0.846693 AAGGGGCAGGTATGATCCAC 59.153 55.000 0.00 0.00 0.00 4.02
1199 1257 2.353208 GCAGGTATGATCCACTCCGATC 60.353 54.545 0.00 0.00 39.35 3.69
1242 1300 2.014857 TCGATGGAGTACTCGTTCTGG 58.985 52.381 16.56 4.20 36.33 3.86
1247 1305 3.079578 TGGAGTACTCGTTCTGGTAGTG 58.920 50.000 16.56 0.00 0.00 2.74
1248 1306 3.244665 TGGAGTACTCGTTCTGGTAGTGA 60.245 47.826 16.56 0.00 0.00 3.41
1251 1309 3.695060 AGTACTCGTTCTGGTAGTGATGG 59.305 47.826 0.00 0.00 0.00 3.51
1269 1327 2.125961 GTGGCGGTCGGATCCTAGT 61.126 63.158 10.75 0.00 0.00 2.57
1270 1328 1.380785 TGGCGGTCGGATCCTAGTT 60.381 57.895 10.75 0.00 0.00 2.24
1271 1329 1.363080 GGCGGTCGGATCCTAGTTC 59.637 63.158 10.75 0.00 0.00 3.01
1272 1330 1.008767 GCGGTCGGATCCTAGTTCG 60.009 63.158 10.75 7.70 0.00 3.95
1273 1331 1.722636 GCGGTCGGATCCTAGTTCGT 61.723 60.000 10.75 0.00 0.00 3.85
1274 1332 1.586422 CGGTCGGATCCTAGTTCGTA 58.414 55.000 10.75 0.00 0.00 3.43
1276 1334 2.570135 GGTCGGATCCTAGTTCGTAGT 58.430 52.381 10.75 0.00 0.00 2.73
1277 1335 2.290093 GGTCGGATCCTAGTTCGTAGTG 59.710 54.545 10.75 0.00 0.00 2.74
1279 1337 4.122776 GTCGGATCCTAGTTCGTAGTGTA 58.877 47.826 10.75 0.00 0.00 2.90
1290 1357 3.069079 TCGTAGTGTAGTTCCAGCTCT 57.931 47.619 0.00 0.00 0.00 4.09
1344 1411 2.359354 TCCGTGGCCGATTGGTTG 60.359 61.111 0.00 0.00 37.67 3.77
1345 1412 2.671619 CCGTGGCCGATTGGTTGT 60.672 61.111 0.00 0.00 37.67 3.32
1353 1420 3.829601 TGGCCGATTGGTTGTTTTAGATT 59.170 39.130 0.00 0.00 37.67 2.40
1367 1434 4.386867 TTTAGATTCGTGGCTCTGTAGG 57.613 45.455 0.00 0.00 0.00 3.18
1398 1465 2.360726 TGCCTAGTCTCGCCGACA 60.361 61.111 7.31 0.00 45.32 4.35
1399 1466 2.407428 TGCCTAGTCTCGCCGACAG 61.407 63.158 7.31 3.54 45.32 3.51
1400 1467 2.409651 CCTAGTCTCGCCGACAGC 59.590 66.667 7.31 0.00 45.32 4.40
1401 1468 2.409651 CTAGTCTCGCCGACAGCC 59.590 66.667 7.31 0.00 45.32 4.85
1402 1469 3.456431 CTAGTCTCGCCGACAGCCG 62.456 68.421 7.31 0.00 45.32 5.52
1451 1518 3.386237 GAGGCTCCTGGTGCTCGT 61.386 66.667 19.07 5.73 0.00 4.18
1482 1549 2.436115 GGCCCGCTTCACCTGTAC 60.436 66.667 0.00 0.00 0.00 2.90
1489 1556 1.741770 CTTCACCTGTACTGGCGCC 60.742 63.158 22.73 22.73 0.00 6.53
1506 1574 2.722071 CGCCGTGTTTGTAATGTTTGT 58.278 42.857 0.00 0.00 0.00 2.83
1512 1580 5.328691 CGTGTTTGTAATGTTTGTGTCTGT 58.671 37.500 0.00 0.00 0.00 3.41
1537 1605 2.885266 GTCATCGATCTGTAGGCCTACA 59.115 50.000 37.12 37.12 43.14 2.74
1539 1607 3.507622 TCATCGATCTGTAGGCCTACATG 59.492 47.826 39.06 31.85 44.15 3.21
1551 1640 5.636903 AGGCCTACATGACAGTCATAAAT 57.363 39.130 15.98 7.44 34.28 1.40
1552 1641 5.615289 AGGCCTACATGACAGTCATAAATC 58.385 41.667 15.98 4.89 34.28 2.17
1600 1689 1.400494 GATACGCCCAAATGTGGTCAC 59.600 52.381 0.00 0.00 44.30 3.67
1602 1691 1.172180 ACGCCCAAATGTGGTCACTG 61.172 55.000 0.00 0.00 44.30 3.66
1606 1695 2.436417 CCCAAATGTGGTCACTGTAGG 58.564 52.381 0.00 0.67 44.30 3.18
1623 1712 4.164264 GGAACCAGGCTCCCCTAA 57.836 61.111 0.00 0.00 40.33 2.69
1624 1713 1.915983 GGAACCAGGCTCCCCTAAG 59.084 63.158 0.00 0.00 40.33 2.18
1625 1714 0.914902 GGAACCAGGCTCCCCTAAGT 60.915 60.000 0.00 0.00 40.33 2.24
1660 1749 2.093235 ACTTGAGCTCCTGTAATCCTGC 60.093 50.000 12.15 0.00 0.00 4.85
1666 1755 4.712476 AGCTCCTGTAATCCTGCTTATTG 58.288 43.478 0.00 0.00 0.00 1.90
1684 1773 9.625747 TGCTTATTGGTGATTATGATCTTGTTA 57.374 29.630 0.00 0.00 33.28 2.41
1761 1850 7.843490 ATGTCAATACATAACTAGTGCGTTT 57.157 32.000 0.00 0.00 44.66 3.60
1763 1852 8.760103 TGTCAATACATAACTAGTGCGTTTTA 57.240 30.769 0.00 0.00 0.00 1.52
1796 1900 6.387465 TCGTAGTCAGTTTCAGTCCTAATTG 58.613 40.000 0.00 0.00 0.00 2.32
1869 1973 4.876107 ACATGTGTGTACTAAATGCCTAGC 59.124 41.667 0.00 0.00 36.63 3.42
1936 2040 2.498807 TCTTCCGCATCAAGAGATCG 57.501 50.000 0.00 0.00 30.20 3.69
2011 2115 5.010012 TCTCAACTCCATTGCTTTCCTTTTC 59.990 40.000 0.00 0.00 38.29 2.29
2069 2173 6.265196 TGATGAGGTATGCTGTTCAACTTTTT 59.735 34.615 0.00 0.00 0.00 1.94
2070 2174 5.830912 TGAGGTATGCTGTTCAACTTTTTG 58.169 37.500 0.00 0.00 0.00 2.44
2072 2176 3.740832 GGTATGCTGTTCAACTTTTTGCC 59.259 43.478 0.00 0.00 32.17 4.52
2073 2177 3.540314 ATGCTGTTCAACTTTTTGCCA 57.460 38.095 0.00 0.00 32.17 4.92
2074 2178 2.891112 TGCTGTTCAACTTTTTGCCAG 58.109 42.857 0.00 0.00 35.83 4.85
2075 2179 1.594397 GCTGTTCAACTTTTTGCCAGC 59.406 47.619 10.87 10.87 43.74 4.85
2076 2180 2.891112 CTGTTCAACTTTTTGCCAGCA 58.109 42.857 0.00 0.00 32.17 4.41
2077 2181 3.460103 CTGTTCAACTTTTTGCCAGCAT 58.540 40.909 0.00 0.00 32.17 3.79
2081 2185 0.760572 AACTTTTTGCCAGCATGCCT 59.239 45.000 15.66 0.00 31.97 4.75
2108 2212 9.449719 AACATTAGAACCTTAACATTCACTAGG 57.550 33.333 0.00 0.00 0.00 3.02
2158 2262 5.721876 TTCTTTGCAAATTGTTTCAGCTG 57.278 34.783 13.23 7.63 0.00 4.24
2334 2438 2.509548 AGGCTATGGTTCTGTGCCATAA 59.490 45.455 0.00 1.37 45.22 1.90
2391 2497 3.384668 ACTGTTGATGTCGTGACTGAAG 58.615 45.455 1.23 0.00 0.00 3.02
2432 2538 2.363306 TCATGCCTTGTTGTGTTCCT 57.637 45.000 0.00 0.00 0.00 3.36
2498 2604 6.844696 TCATTTTCTGTCTTGTGTACTGTC 57.155 37.500 0.00 0.00 0.00 3.51
2507 2613 3.377798 TCTTGTGTACTGTCGTGTGTACA 59.622 43.478 11.12 11.12 44.32 2.90
2578 2684 0.734889 GCCGATAACACATTGCAGCT 59.265 50.000 0.00 0.00 0.00 4.24
2596 2827 1.270839 GCTGTGCCAAGGTTCTGTAGA 60.271 52.381 0.00 0.00 0.00 2.59
2669 2900 1.376086 CAGGGATGCACTGTGGTGA 59.624 57.895 10.21 0.00 45.61 4.02
2670 2901 0.250858 CAGGGATGCACTGTGGTGAA 60.251 55.000 10.21 0.00 45.61 3.18
2679 2910 1.600636 CTGTGGTGAATGCGGTGGT 60.601 57.895 0.00 0.00 0.00 4.16
2680 2911 1.152860 TGTGGTGAATGCGGTGGTT 60.153 52.632 0.00 0.00 0.00 3.67
2681 2912 0.753479 TGTGGTGAATGCGGTGGTTT 60.753 50.000 0.00 0.00 0.00 3.27
2682 2913 0.318614 GTGGTGAATGCGGTGGTTTG 60.319 55.000 0.00 0.00 0.00 2.93
2683 2914 1.288752 GGTGAATGCGGTGGTTTGG 59.711 57.895 0.00 0.00 0.00 3.28
2684 2915 1.175983 GGTGAATGCGGTGGTTTGGA 61.176 55.000 0.00 0.00 0.00 3.53
2685 2916 0.039527 GTGAATGCGGTGGTTTGGAC 60.040 55.000 0.00 0.00 0.00 4.02
2706 2937 4.521146 ACTTTGGAGGATGCAGATTAGTG 58.479 43.478 0.00 0.00 38.09 2.74
2708 2939 1.141657 TGGAGGATGCAGATTAGTGGC 59.858 52.381 0.00 0.00 0.00 5.01
2710 2941 2.421952 GGAGGATGCAGATTAGTGGCAA 60.422 50.000 0.00 0.00 41.43 4.52
2711 2942 2.877168 GAGGATGCAGATTAGTGGCAAG 59.123 50.000 0.00 0.00 41.43 4.01
2712 2943 2.507058 AGGATGCAGATTAGTGGCAAGA 59.493 45.455 0.00 0.00 41.43 3.02
2713 2944 3.137913 AGGATGCAGATTAGTGGCAAGAT 59.862 43.478 0.00 0.00 41.43 2.40
2714 2945 3.252701 GGATGCAGATTAGTGGCAAGATG 59.747 47.826 0.00 0.00 41.43 2.90
2715 2946 3.632643 TGCAGATTAGTGGCAAGATGA 57.367 42.857 0.00 0.00 34.05 2.92
2717 2948 3.273434 GCAGATTAGTGGCAAGATGACA 58.727 45.455 0.00 0.00 29.15 3.58
2724 2955 2.740714 GGCAAGATGACACGACGGC 61.741 63.158 0.00 0.00 0.00 5.68
2725 2956 1.738099 GCAAGATGACACGACGGCT 60.738 57.895 0.00 0.00 0.00 5.52
2726 2957 1.291877 GCAAGATGACACGACGGCTT 61.292 55.000 0.00 0.00 0.00 4.35
2727 2958 0.716108 CAAGATGACACGACGGCTTC 59.284 55.000 0.00 0.00 0.00 3.86
2728 2959 0.389948 AAGATGACACGACGGCTTCC 60.390 55.000 0.00 0.00 0.00 3.46
2729 2960 1.810030 GATGACACGACGGCTTCCC 60.810 63.158 0.00 0.00 0.00 3.97
2730 2961 3.310860 ATGACACGACGGCTTCCCC 62.311 63.158 0.00 0.00 0.00 4.81
2786 3525 7.340487 TGCTCTCTGAAGAATACAAGTCTCATA 59.660 37.037 0.00 0.00 0.00 2.15
2787 3526 7.647715 GCTCTCTGAAGAATACAAGTCTCATAC 59.352 40.741 0.00 0.00 0.00 2.39
2890 3630 3.640967 CCTTTGTCCCAGTTTCAATTCCA 59.359 43.478 0.00 0.00 0.00 3.53
2940 3711 7.148590 GGTTGAATAATTGATGCCAAACTTCAC 60.149 37.037 0.00 0.00 35.67 3.18
3033 3804 6.112734 TCAACACCTACAATACTAAGCATGG 58.887 40.000 0.00 0.00 0.00 3.66
3092 3863 9.314321 TGTTGATATTTTTCTCTATCGGACTTC 57.686 33.333 0.00 0.00 0.00 3.01
3104 3875 7.176165 TCTCTATCGGACTTCAGACAAAACTTA 59.824 37.037 0.00 0.00 0.00 2.24
3111 3882 8.276325 CGGACTTCAGACAAAACTTATATATGC 58.724 37.037 0.00 0.00 0.00 3.14
3112 3883 9.109393 GGACTTCAGACAAAACTTATATATGCA 57.891 33.333 0.00 0.00 0.00 3.96
3114 3885 9.890629 ACTTCAGACAAAACTTATATATGCAGA 57.109 29.630 0.00 0.00 0.00 4.26
3116 3887 9.890629 TTCAGACAAAACTTATATATGCAGAGT 57.109 29.630 0.00 0.00 0.00 3.24
3132 3903 7.872113 ATGCAGAGTAAAAAGAATAGAAGGG 57.128 36.000 0.00 0.00 0.00 3.95
3133 3904 7.016153 TGCAGAGTAAAAAGAATAGAAGGGA 57.984 36.000 0.00 0.00 0.00 4.20
3134 3905 7.106239 TGCAGAGTAAAAAGAATAGAAGGGAG 58.894 38.462 0.00 0.00 0.00 4.30
3135 3906 7.106890 GCAGAGTAAAAAGAATAGAAGGGAGT 58.893 38.462 0.00 0.00 0.00 3.85
3136 3907 8.258708 GCAGAGTAAAAAGAATAGAAGGGAGTA 58.741 37.037 0.00 0.00 0.00 2.59
3139 3910 8.966069 AGTAAAAAGAATAGAAGGGAGTATGC 57.034 34.615 0.00 0.00 0.00 3.14
3157 3928 4.660789 ATGCCATAAAGCTTCATCCAAC 57.339 40.909 0.00 0.00 0.00 3.77
3202 3973 8.021396 GGTGCTAAGTTCTACCAACTAATTTTG 58.979 37.037 0.00 0.00 33.42 2.44
3222 3993 8.702163 ATTTTGGCAATGTATAAGTGCTTAAC 57.298 30.769 0.00 0.00 38.36 2.01
3223 3994 7.461182 TTTGGCAATGTATAAGTGCTTAACT 57.539 32.000 0.00 0.00 42.60 2.24
3296 4068 5.391629 GCACTGGTTAGTAGGCAATTTACAC 60.392 44.000 0.00 0.00 34.74 2.90
3325 4097 8.462016 GTCCATACATTTAGCATTGTTTCTTCT 58.538 33.333 0.00 0.00 0.00 2.85
3334 4106 3.120511 GCATTGTTTCTTCTCGAGGTCAC 60.121 47.826 13.56 3.61 0.00 3.67
3406 4178 2.785540 TGCATATGTGGCACTCTCAA 57.214 45.000 19.83 0.00 36.11 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.649331 ACAATCAAGGTCCGACTACG 57.351 50.000 0.00 0.00 39.43 3.51
7 8 5.282510 CAGATACAATCAAGGTCCGACTAC 58.717 45.833 0.00 0.00 0.00 2.73
10 11 3.132289 TCCAGATACAATCAAGGTCCGAC 59.868 47.826 0.00 0.00 0.00 4.79
11 12 3.371034 TCCAGATACAATCAAGGTCCGA 58.629 45.455 0.00 0.00 0.00 4.55
12 13 3.819564 TCCAGATACAATCAAGGTCCG 57.180 47.619 0.00 0.00 0.00 4.79
13 14 5.296151 TCATCCAGATACAATCAAGGTCC 57.704 43.478 0.00 0.00 0.00 4.46
14 15 6.294473 ACATCATCCAGATACAATCAAGGTC 58.706 40.000 0.00 0.00 34.43 3.85
15 16 6.257994 ACATCATCCAGATACAATCAAGGT 57.742 37.500 0.00 0.00 34.43 3.50
16 17 8.859236 ATTACATCATCCAGATACAATCAAGG 57.141 34.615 0.00 0.00 34.43 3.61
42 43 9.897744 CACTTCACACAAATACATGAATAAAGT 57.102 29.630 0.00 0.00 31.00 2.66
43 44 9.345517 CCACTTCACACAAATACATGAATAAAG 57.654 33.333 0.00 0.00 31.00 1.85
44 45 7.812191 GCCACTTCACACAAATACATGAATAAA 59.188 33.333 0.00 0.00 31.00 1.40
45 46 7.312154 GCCACTTCACACAAATACATGAATAA 58.688 34.615 0.00 0.00 31.00 1.40
46 47 6.403092 CGCCACTTCACACAAATACATGAATA 60.403 38.462 0.00 0.00 31.00 1.75
47 48 5.619757 CGCCACTTCACACAAATACATGAAT 60.620 40.000 0.00 0.00 31.00 2.57
48 49 4.320129 CGCCACTTCACACAAATACATGAA 60.320 41.667 0.00 0.00 0.00 2.57
49 50 3.188254 CGCCACTTCACACAAATACATGA 59.812 43.478 0.00 0.00 0.00 3.07
50 51 3.188254 TCGCCACTTCACACAAATACATG 59.812 43.478 0.00 0.00 0.00 3.21
51 52 3.407698 TCGCCACTTCACACAAATACAT 58.592 40.909 0.00 0.00 0.00 2.29
52 53 2.839975 TCGCCACTTCACACAAATACA 58.160 42.857 0.00 0.00 0.00 2.29
53 54 4.158384 CAATCGCCACTTCACACAAATAC 58.842 43.478 0.00 0.00 0.00 1.89
54 55 3.818210 ACAATCGCCACTTCACACAAATA 59.182 39.130 0.00 0.00 0.00 1.40
55 56 2.622942 ACAATCGCCACTTCACACAAAT 59.377 40.909 0.00 0.00 0.00 2.32
56 57 2.020720 ACAATCGCCACTTCACACAAA 58.979 42.857 0.00 0.00 0.00 2.83
57 58 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
58 59 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
59 60 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
60 61 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
61 62 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
62 63 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
68 69 2.943033 ACATAGTTGGCTTACAATCGCC 59.057 45.455 0.00 0.00 46.46 5.54
69 70 5.696724 AGATACATAGTTGGCTTACAATCGC 59.303 40.000 0.00 0.00 41.95 4.58
70 71 7.715265 AAGATACATAGTTGGCTTACAATCG 57.285 36.000 0.00 0.00 41.95 3.34
73 74 8.736244 GGAAAAAGATACATAGTTGGCTTACAA 58.264 33.333 0.00 0.00 36.54 2.41
74 75 7.338449 GGGAAAAAGATACATAGTTGGCTTACA 59.662 37.037 0.00 0.00 0.00 2.41
75 76 7.556635 AGGGAAAAAGATACATAGTTGGCTTAC 59.443 37.037 0.00 0.00 0.00 2.34
76 77 7.639378 AGGGAAAAAGATACATAGTTGGCTTA 58.361 34.615 0.00 0.00 0.00 3.09
77 78 6.494059 AGGGAAAAAGATACATAGTTGGCTT 58.506 36.000 0.00 0.00 0.00 4.35
78 79 6.079712 AGGGAAAAAGATACATAGTTGGCT 57.920 37.500 0.00 0.00 0.00 4.75
79 80 6.775594 AAGGGAAAAAGATACATAGTTGGC 57.224 37.500 0.00 0.00 0.00 4.52
80 81 9.408648 ACATAAGGGAAAAAGATACATAGTTGG 57.591 33.333 0.00 0.00 0.00 3.77
90 91 9.367160 CCCATGTAATACATAAGGGAAAAAGAT 57.633 33.333 18.88 0.00 41.79 2.40
91 92 8.340757 ACCCATGTAATACATAAGGGAAAAAGA 58.659 33.333 26.38 0.00 41.79 2.52
92 93 8.533569 ACCCATGTAATACATAAGGGAAAAAG 57.466 34.615 26.38 7.48 41.79 2.27
93 94 8.754080 CAACCCATGTAATACATAAGGGAAAAA 58.246 33.333 26.38 0.00 41.79 1.94
94 95 7.896496 ACAACCCATGTAATACATAAGGGAAAA 59.104 33.333 26.38 0.00 41.79 2.29
95 96 7.340743 CACAACCCATGTAATACATAAGGGAAA 59.659 37.037 26.38 0.00 41.79 3.13
96 97 6.831353 CACAACCCATGTAATACATAAGGGAA 59.169 38.462 26.38 0.00 41.79 3.97
97 98 6.069323 ACACAACCCATGTAATACATAAGGGA 60.069 38.462 26.38 0.00 41.79 4.20
98 99 6.039270 CACACAACCCATGTAATACATAAGGG 59.961 42.308 20.91 20.91 43.69 3.95
99 100 6.826231 TCACACAACCCATGTAATACATAAGG 59.174 38.462 15.94 15.94 41.46 2.69
100 101 7.857734 TCACACAACCCATGTAATACATAAG 57.142 36.000 5.49 3.25 41.46 1.73
101 102 8.103935 TCTTCACACAACCCATGTAATACATAA 58.896 33.333 5.49 0.00 41.46 1.90
102 103 7.625469 TCTTCACACAACCCATGTAATACATA 58.375 34.615 5.49 0.00 41.46 2.29
103 104 6.480763 TCTTCACACAACCCATGTAATACAT 58.519 36.000 0.00 0.00 41.46 2.29
104 105 5.870706 TCTTCACACAACCCATGTAATACA 58.129 37.500 0.00 0.00 41.46 2.29
105 106 7.391148 AATCTTCACACAACCCATGTAATAC 57.609 36.000 0.00 0.00 41.46 1.89
106 107 7.554835 GGTAATCTTCACACAACCCATGTAATA 59.445 37.037 0.00 0.00 41.46 0.98
107 108 6.377146 GGTAATCTTCACACAACCCATGTAAT 59.623 38.462 0.00 0.00 41.46 1.89
108 109 5.708230 GGTAATCTTCACACAACCCATGTAA 59.292 40.000 0.00 0.00 41.46 2.41
109 110 5.013704 AGGTAATCTTCACACAACCCATGTA 59.986 40.000 0.00 0.00 41.46 2.29
110 111 4.079253 GGTAATCTTCACACAACCCATGT 58.921 43.478 0.00 0.00 45.34 3.21
111 112 4.335416 AGGTAATCTTCACACAACCCATG 58.665 43.478 0.00 0.00 0.00 3.66
112 113 4.042809 TGAGGTAATCTTCACACAACCCAT 59.957 41.667 0.00 0.00 0.00 4.00
113 114 3.392947 TGAGGTAATCTTCACACAACCCA 59.607 43.478 0.00 0.00 0.00 4.51
114 115 3.751698 GTGAGGTAATCTTCACACAACCC 59.248 47.826 5.78 0.00 45.79 4.11
121 122 3.368236 GTCGCAAGTGAGGTAATCTTCAC 59.632 47.826 2.97 2.97 46.51 3.18
122 123 3.006430 TGTCGCAAGTGAGGTAATCTTCA 59.994 43.478 0.00 0.00 39.48 3.02
123 124 3.585862 TGTCGCAAGTGAGGTAATCTTC 58.414 45.455 0.00 0.00 39.48 2.87
124 125 3.678056 TGTCGCAAGTGAGGTAATCTT 57.322 42.857 0.00 0.00 39.48 2.40
125 126 3.895232 ATGTCGCAAGTGAGGTAATCT 57.105 42.857 0.00 0.00 39.48 2.40
126 127 3.485877 GCAATGTCGCAAGTGAGGTAATC 60.486 47.826 0.00 0.00 39.48 1.75
127 128 2.420022 GCAATGTCGCAAGTGAGGTAAT 59.580 45.455 0.00 0.00 39.48 1.89
128 129 1.804151 GCAATGTCGCAAGTGAGGTAA 59.196 47.619 0.00 0.00 39.48 2.85
129 130 1.001974 AGCAATGTCGCAAGTGAGGTA 59.998 47.619 0.00 0.00 39.48 3.08
130 131 0.250467 AGCAATGTCGCAAGTGAGGT 60.250 50.000 0.00 0.00 39.48 3.85
131 132 0.877071 AAGCAATGTCGCAAGTGAGG 59.123 50.000 0.00 0.00 39.48 3.86
132 133 2.031769 TGAAAGCAATGTCGCAAGTGAG 60.032 45.455 0.00 0.00 39.48 3.51
133 134 1.946081 TGAAAGCAATGTCGCAAGTGA 59.054 42.857 0.00 0.00 39.48 3.41
134 135 2.404265 TGAAAGCAATGTCGCAAGTG 57.596 45.000 0.00 0.00 39.48 3.16
135 136 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
144 145 3.189285 GCATAACCGCATTGAAAGCAAT 58.811 40.909 0.00 0.00 45.33 3.56
145 146 2.605030 GCATAACCGCATTGAAAGCAA 58.395 42.857 0.00 0.00 38.60 3.91
146 147 1.135141 GGCATAACCGCATTGAAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
147 148 1.134946 AGGCATAACCGCATTGAAAGC 59.865 47.619 0.00 0.00 46.52 3.51
148 149 2.684881 AGAGGCATAACCGCATTGAAAG 59.315 45.455 0.00 0.00 46.52 2.62
149 150 2.722094 AGAGGCATAACCGCATTGAAA 58.278 42.857 0.00 0.00 46.52 2.69
150 151 2.418368 AGAGGCATAACCGCATTGAA 57.582 45.000 0.00 0.00 46.52 2.69
151 152 3.118408 ACTTAGAGGCATAACCGCATTGA 60.118 43.478 0.00 0.00 46.52 2.57
152 153 3.206150 ACTTAGAGGCATAACCGCATTG 58.794 45.455 0.00 0.00 46.52 2.82
153 154 3.118408 TGACTTAGAGGCATAACCGCATT 60.118 43.478 0.00 0.00 46.52 3.56
154 155 2.434336 TGACTTAGAGGCATAACCGCAT 59.566 45.455 0.00 0.00 46.52 4.73
155 156 1.828595 TGACTTAGAGGCATAACCGCA 59.171 47.619 0.00 0.00 46.52 5.69
156 157 2.596904 TGACTTAGAGGCATAACCGC 57.403 50.000 0.00 0.00 46.52 5.68
157 158 2.802816 GCATGACTTAGAGGCATAACCG 59.197 50.000 0.00 0.00 43.49 4.44
158 159 4.078639 AGCATGACTTAGAGGCATAACC 57.921 45.455 0.00 0.00 43.49 2.85
159 160 4.210120 CGAAGCATGACTTAGAGGCATAAC 59.790 45.833 0.00 0.00 43.49 1.89
160 161 4.099419 TCGAAGCATGACTTAGAGGCATAA 59.901 41.667 0.00 0.00 43.49 1.90
161 162 3.636764 TCGAAGCATGACTTAGAGGCATA 59.363 43.478 0.00 0.00 43.49 3.14
163 164 1.824852 TCGAAGCATGACTTAGAGGCA 59.175 47.619 0.00 0.00 39.29 4.75
164 165 2.197577 GTCGAAGCATGACTTAGAGGC 58.802 52.381 11.04 0.00 40.21 4.70
165 166 3.182967 GTGTCGAAGCATGACTTAGAGG 58.817 50.000 11.04 0.87 40.21 3.69
166 167 2.848887 CGTGTCGAAGCATGACTTAGAG 59.151 50.000 11.04 4.21 40.21 2.43
167 168 2.228103 ACGTGTCGAAGCATGACTTAGA 59.772 45.455 0.00 2.80 39.29 2.10
168 169 2.342651 CACGTGTCGAAGCATGACTTAG 59.657 50.000 7.58 0.22 39.29 2.18
169 170 2.324860 CACGTGTCGAAGCATGACTTA 58.675 47.619 7.58 0.00 39.29 2.24
170 171 1.139989 CACGTGTCGAAGCATGACTT 58.860 50.000 7.58 0.00 42.98 3.01
171 172 0.667487 CCACGTGTCGAAGCATGACT 60.667 55.000 15.65 0.00 37.26 3.41
172 173 1.626654 CCCACGTGTCGAAGCATGAC 61.627 60.000 15.65 0.00 36.88 3.06
173 174 1.374125 CCCACGTGTCGAAGCATGA 60.374 57.895 15.65 0.00 0.00 3.07
174 175 1.354337 CTCCCACGTGTCGAAGCATG 61.354 60.000 15.65 0.00 0.00 4.06
175 176 1.079819 CTCCCACGTGTCGAAGCAT 60.080 57.895 15.65 0.00 0.00 3.79
176 177 1.532604 ATCTCCCACGTGTCGAAGCA 61.533 55.000 15.65 0.00 0.00 3.91
177 178 0.454600 TATCTCCCACGTGTCGAAGC 59.545 55.000 15.65 0.00 0.00 3.86
178 179 4.288531 GTTATATCTCCCACGTGTCGAAG 58.711 47.826 15.65 6.13 0.00 3.79
179 180 3.067180 GGTTATATCTCCCACGTGTCGAA 59.933 47.826 15.65 0.00 0.00 3.71
180 181 2.620115 GGTTATATCTCCCACGTGTCGA 59.380 50.000 15.65 8.55 0.00 4.20
181 182 2.603892 CGGTTATATCTCCCACGTGTCG 60.604 54.545 15.65 4.04 0.00 4.35
182 183 2.861360 GCGGTTATATCTCCCACGTGTC 60.861 54.545 15.65 0.00 0.00 3.67
183 184 1.068127 GCGGTTATATCTCCCACGTGT 59.932 52.381 15.65 0.00 0.00 4.49
184 185 1.067974 TGCGGTTATATCTCCCACGTG 59.932 52.381 9.08 9.08 0.00 4.49
185 186 1.405872 TGCGGTTATATCTCCCACGT 58.594 50.000 0.00 0.00 0.00 4.49
186 187 2.607187 GATGCGGTTATATCTCCCACG 58.393 52.381 0.00 0.00 0.00 4.94
187 188 2.230508 TCGATGCGGTTATATCTCCCAC 59.769 50.000 0.00 0.00 0.00 4.61
188 189 2.492088 CTCGATGCGGTTATATCTCCCA 59.508 50.000 0.00 0.00 0.00 4.37
189 190 2.159226 CCTCGATGCGGTTATATCTCCC 60.159 54.545 0.00 0.00 0.00 4.30
190 191 2.159226 CCCTCGATGCGGTTATATCTCC 60.159 54.545 0.00 0.00 0.00 3.71
191 192 2.735762 GCCCTCGATGCGGTTATATCTC 60.736 54.545 0.00 0.00 0.00 2.75
192 193 1.204941 GCCCTCGATGCGGTTATATCT 59.795 52.381 0.00 0.00 0.00 1.98
193 194 1.067142 TGCCCTCGATGCGGTTATATC 60.067 52.381 3.05 0.00 0.00 1.63
194 195 0.973632 TGCCCTCGATGCGGTTATAT 59.026 50.000 3.05 0.00 0.00 0.86
195 196 0.973632 ATGCCCTCGATGCGGTTATA 59.026 50.000 3.05 0.00 0.00 0.98
196 197 0.108585 AATGCCCTCGATGCGGTTAT 59.891 50.000 3.05 0.00 0.00 1.89
197 198 0.753867 TAATGCCCTCGATGCGGTTA 59.246 50.000 3.05 2.81 0.00 2.85
198 199 0.108585 ATAATGCCCTCGATGCGGTT 59.891 50.000 3.05 3.60 0.00 4.44
199 200 0.973632 TATAATGCCCTCGATGCGGT 59.026 50.000 3.05 0.00 0.00 5.68
200 201 1.645034 CTATAATGCCCTCGATGCGG 58.355 55.000 3.05 0.00 0.00 5.69
201 202 1.002366 GCTATAATGCCCTCGATGCG 58.998 55.000 3.05 0.00 0.00 4.73
202 203 2.393271 AGCTATAATGCCCTCGATGC 57.607 50.000 0.38 0.38 0.00 3.91
203 204 2.926200 CGAAGCTATAATGCCCTCGATG 59.074 50.000 0.00 0.00 39.56 3.84
204 205 2.563179 ACGAAGCTATAATGCCCTCGAT 59.437 45.455 13.02 0.00 39.56 3.59
205 206 1.961394 ACGAAGCTATAATGCCCTCGA 59.039 47.619 13.02 0.00 39.56 4.04
206 207 2.061773 CACGAAGCTATAATGCCCTCG 58.938 52.381 0.00 0.00 41.51 4.63
207 208 3.113260 ACACGAAGCTATAATGCCCTC 57.887 47.619 0.00 0.00 0.00 4.30
208 209 3.895656 TCTACACGAAGCTATAATGCCCT 59.104 43.478 0.00 0.00 0.00 5.19
209 210 3.988517 GTCTACACGAAGCTATAATGCCC 59.011 47.826 0.00 0.00 0.00 5.36
210 211 4.617959 TGTCTACACGAAGCTATAATGCC 58.382 43.478 0.00 0.00 0.00 4.40
211 212 5.119279 CCATGTCTACACGAAGCTATAATGC 59.881 44.000 0.00 0.00 0.00 3.56
212 213 6.216569 ACCATGTCTACACGAAGCTATAATG 58.783 40.000 0.00 0.00 0.00 1.90
213 214 6.406692 ACCATGTCTACACGAAGCTATAAT 57.593 37.500 0.00 0.00 0.00 1.28
214 215 5.847111 ACCATGTCTACACGAAGCTATAA 57.153 39.130 0.00 0.00 0.00 0.98
215 216 5.847111 AACCATGTCTACACGAAGCTATA 57.153 39.130 0.00 0.00 0.00 1.31
216 217 4.737855 AACCATGTCTACACGAAGCTAT 57.262 40.909 0.00 0.00 0.00 2.97
217 218 4.530710 AAACCATGTCTACACGAAGCTA 57.469 40.909 0.00 0.00 0.00 3.32
218 219 3.402628 AAACCATGTCTACACGAAGCT 57.597 42.857 0.00 0.00 0.00 3.74
231 232 2.223249 CCACGCCTTATCGAAAACCATG 60.223 50.000 0.00 0.00 0.00 3.66
233 234 1.444836 CCACGCCTTATCGAAAACCA 58.555 50.000 0.00 0.00 0.00 3.67
258 259 0.032017 AGGTAAGCGGGAGACTGGAT 60.032 55.000 0.00 0.00 37.13 3.41
262 263 0.976590 GGGAAGGTAAGCGGGAGACT 60.977 60.000 0.00 0.00 0.00 3.24
318 319 3.332409 CGGTCCGTTCACGCGTTT 61.332 61.111 10.22 0.00 38.18 3.60
360 361 2.178521 GACGTGATCGGACGCTGT 59.821 61.111 5.56 0.00 43.33 4.40
382 383 3.779759 TCAAAATGCTTGCAAACGTCTT 58.220 36.364 0.00 0.00 0.00 3.01
626 644 7.481798 ACACGAATTTATTCTTTTGCGAGATTC 59.518 33.333 0.00 0.00 34.69 2.52
667 685 6.318913 TGGAATTTCCTATCCCTTCAAACAA 58.681 36.000 16.25 0.00 37.46 2.83
680 698 8.154203 GGGAAGAAAAATGTTTGGAATTTCCTA 58.846 33.333 16.25 6.24 37.46 2.94
682 700 6.206634 GGGGAAGAAAAATGTTTGGAATTTCC 59.793 38.462 8.59 8.59 36.96 3.13
717 738 7.960738 GTGTGCGCATTACTCTTTTTATTCTAA 59.039 33.333 15.91 0.00 0.00 2.10
727 748 0.790207 CGTGTGTGCGCATTACTCTT 59.210 50.000 15.91 0.00 0.00 2.85
733 754 2.248140 CGAACGTGTGTGCGCATT 59.752 55.556 15.91 1.20 40.98 3.56
766 821 2.610232 CCTTTTGAAATGAAGGGGTGCG 60.610 50.000 0.00 0.00 38.98 5.34
801 856 3.259425 CTTTGCACGCAGACCAGGC 62.259 63.158 0.00 0.00 0.00 4.85
927 982 2.484947 CCCAGAGCCGGGTTTAATAGTC 60.485 54.545 8.00 0.00 41.83 2.59
1021 1076 1.764854 GGGTAGGGGATCCGAGCAA 60.765 63.158 5.45 0.00 37.81 3.91
1118 1176 2.347490 GCGGGCTTCTTGTCCTCA 59.653 61.111 0.00 0.00 38.58 3.86
1192 1250 1.457009 GGGGAAGACGGAGATCGGAG 61.457 65.000 0.00 0.00 44.45 4.63
1199 1257 2.861147 AAAAAGAGGGGAAGACGGAG 57.139 50.000 0.00 0.00 0.00 4.63
1235 1293 2.007049 GCCACCATCACTACCAGAACG 61.007 57.143 0.00 0.00 0.00 3.95
1242 1300 1.518572 CGACCGCCACCATCACTAC 60.519 63.158 0.00 0.00 0.00 2.73
1247 1305 2.280186 GATCCGACCGCCACCATC 60.280 66.667 0.00 0.00 0.00 3.51
1248 1306 2.939760 TAGGATCCGACCGCCACCAT 62.940 60.000 5.98 0.00 34.73 3.55
1251 1309 1.673808 AACTAGGATCCGACCGCCAC 61.674 60.000 5.98 0.00 34.73 5.01
1269 1327 3.190744 CAGAGCTGGAACTACACTACGAA 59.809 47.826 0.00 0.00 0.00 3.85
1270 1328 2.747989 CAGAGCTGGAACTACACTACGA 59.252 50.000 0.00 0.00 0.00 3.43
1271 1329 2.488545 ACAGAGCTGGAACTACACTACG 59.511 50.000 0.00 0.00 34.19 3.51
1272 1330 3.839293 CACAGAGCTGGAACTACACTAC 58.161 50.000 0.00 0.00 34.19 2.73
1273 1331 2.231478 GCACAGAGCTGGAACTACACTA 59.769 50.000 0.00 0.00 41.15 2.74
1274 1332 1.001406 GCACAGAGCTGGAACTACACT 59.999 52.381 0.00 0.00 41.15 3.55
1276 1334 3.914984 GCACAGAGCTGGAACTACA 57.085 52.632 0.00 0.00 41.15 2.74
1290 1357 4.279922 TCCGGATTCTAAATCGATAGCACA 59.720 41.667 0.00 0.00 0.00 4.57
1296 1363 5.478679 ACAGAGATCCGGATTCTAAATCGAT 59.521 40.000 20.22 0.00 0.00 3.59
1344 1411 4.567159 CCTACAGAGCCACGAATCTAAAAC 59.433 45.833 0.00 0.00 0.00 2.43
1345 1412 4.755411 CCTACAGAGCCACGAATCTAAAA 58.245 43.478 0.00 0.00 0.00 1.52
1353 1420 3.006756 GCAGCCTACAGAGCCACGA 62.007 63.158 0.00 0.00 0.00 4.35
1367 1434 4.471726 GGCACACGCATCTGCAGC 62.472 66.667 9.47 0.00 42.21 5.25
1402 1469 4.083862 GAGGGGACACCAGTCGGC 62.084 72.222 0.00 0.00 45.92 5.54
1403 1470 3.760035 CGAGGGGACACCAGTCGG 61.760 72.222 0.00 0.00 45.92 4.79
1404 1471 1.246056 TAACGAGGGGACACCAGTCG 61.246 60.000 3.94 3.94 45.92 4.18
1405 1472 0.531200 CTAACGAGGGGACACCAGTC 59.469 60.000 0.00 0.00 43.89 3.51
1451 1518 4.373116 GGCCGACAGAGCAACCGA 62.373 66.667 0.00 0.00 0.00 4.69
1469 1536 2.094659 CGCCAGTACAGGTGAAGCG 61.095 63.158 12.24 1.85 41.75 4.68
1479 1546 0.945265 TACAAACACGGCGCCAGTAC 60.945 55.000 28.98 0.00 0.00 2.73
1482 1549 0.454285 CATTACAAACACGGCGCCAG 60.454 55.000 28.98 20.85 0.00 4.85
1489 1556 5.328691 ACAGACACAAACATTACAAACACG 58.671 37.500 0.00 0.00 0.00 4.49
1506 1574 2.092323 AGATCGATGACGGAACAGACA 58.908 47.619 0.54 0.00 40.21 3.41
1512 1580 1.337071 GCCTACAGATCGATGACGGAA 59.663 52.381 0.54 0.00 40.21 4.30
1537 1605 7.876936 AAGAATGCAGATTTATGACTGTCAT 57.123 32.000 25.01 25.01 40.72 3.06
1539 1607 7.854916 GCTAAAGAATGCAGATTTATGACTGTC 59.145 37.037 0.00 0.00 36.62 3.51
1551 1640 2.040278 ACCAGTGGCTAAAGAATGCAGA 59.960 45.455 9.78 0.00 0.00 4.26
1552 1641 2.440409 ACCAGTGGCTAAAGAATGCAG 58.560 47.619 9.78 0.00 0.00 4.41
1600 1689 1.908483 GGAGCCTGGTTCCCTACAG 59.092 63.158 18.07 0.00 34.54 2.74
1606 1695 0.914902 ACTTAGGGGAGCCTGGTTCC 60.915 60.000 20.34 20.34 32.00 3.62
1615 1704 4.450305 TGCCTAGTACTACTTAGGGGAG 57.550 50.000 10.74 0.00 0.00 4.30
1622 1711 5.932883 GCTCAAGTTTTGCCTAGTACTACTT 59.067 40.000 0.00 0.00 0.00 2.24
1623 1712 5.246429 AGCTCAAGTTTTGCCTAGTACTACT 59.754 40.000 0.00 0.00 0.00 2.57
1624 1713 5.480205 AGCTCAAGTTTTGCCTAGTACTAC 58.520 41.667 0.00 0.00 0.00 2.73
1625 1714 5.337330 GGAGCTCAAGTTTTGCCTAGTACTA 60.337 44.000 17.19 1.89 0.00 1.82
1758 1847 9.821662 AAACTGACTACGAAGCAATAATAAAAC 57.178 29.630 0.00 0.00 0.00 2.43
1760 1849 9.210329 TGAAACTGACTACGAAGCAATAATAAA 57.790 29.630 0.00 0.00 0.00 1.40
1761 1850 8.766000 TGAAACTGACTACGAAGCAATAATAA 57.234 30.769 0.00 0.00 0.00 1.40
1763 1852 6.874134 ACTGAAACTGACTACGAAGCAATAAT 59.126 34.615 0.00 0.00 0.00 1.28
1796 1900 3.911661 AGCTTGATGTGCAGAGAAAAC 57.088 42.857 0.00 0.00 0.00 2.43
1869 1973 5.174395 CAGATTAGGGACAAGTGTCAAGAG 58.826 45.833 13.21 0.00 46.47 2.85
2011 2115 2.331805 CGGAGCCTACGACCATCG 59.668 66.667 0.00 0.00 46.93 3.84
2069 2173 2.092484 TCTAATGTTAGGCATGCTGGCA 60.092 45.455 18.92 11.89 46.46 4.92
2070 2174 2.575532 TCTAATGTTAGGCATGCTGGC 58.424 47.619 18.92 0.18 44.10 4.85
2072 2176 4.202441 AGGTTCTAATGTTAGGCATGCTG 58.798 43.478 18.92 0.00 37.96 4.41
2073 2177 4.510167 AGGTTCTAATGTTAGGCATGCT 57.490 40.909 18.92 6.26 37.96 3.79
2074 2178 6.094881 TGTTAAGGTTCTAATGTTAGGCATGC 59.905 38.462 9.90 9.90 37.96 4.06
2075 2179 7.624360 TGTTAAGGTTCTAATGTTAGGCATG 57.376 36.000 0.32 0.00 37.96 4.06
2076 2180 8.823220 AATGTTAAGGTTCTAATGTTAGGCAT 57.177 30.769 0.32 0.00 40.03 4.40
2077 2181 7.885922 TGAATGTTAAGGTTCTAATGTTAGGCA 59.114 33.333 0.32 0.00 0.00 4.75
2108 2212 1.626654 CGACGGCACAGACCATCAAC 61.627 60.000 0.00 0.00 0.00 3.18
2158 2262 1.443828 GTCGCCTTCCTCCATCTCC 59.556 63.158 0.00 0.00 0.00 3.71
2334 2438 2.452114 CTCCAGACCCCCTCAGGT 59.548 66.667 0.00 0.00 45.12 4.00
2432 2538 6.403866 ACCAAATGAGTTTGCAAATCACTA 57.596 33.333 16.21 1.32 42.66 2.74
2578 2684 2.047061 ACTCTACAGAACCTTGGCACA 58.953 47.619 0.00 0.00 0.00 4.57
2586 2692 7.216973 TCTGAACTTTCTACTCTACAGAACC 57.783 40.000 0.00 0.00 31.86 3.62
2588 2694 8.466617 ACTTCTGAACTTTCTACTCTACAGAA 57.533 34.615 0.00 0.00 39.61 3.02
2589 2695 8.466617 AACTTCTGAACTTTCTACTCTACAGA 57.533 34.615 0.00 0.00 0.00 3.41
2596 2827 9.668497 AAACTACAAACTTCTGAACTTTCTACT 57.332 29.630 0.00 0.00 0.00 2.57
2669 2900 1.068434 CAAAGTCCAAACCACCGCATT 59.932 47.619 0.00 0.00 0.00 3.56
2670 2901 0.673437 CAAAGTCCAAACCACCGCAT 59.327 50.000 0.00 0.00 0.00 4.73
2679 2910 2.108075 TCTGCATCCTCCAAAGTCCAAA 59.892 45.455 0.00 0.00 0.00 3.28
2680 2911 1.704628 TCTGCATCCTCCAAAGTCCAA 59.295 47.619 0.00 0.00 0.00 3.53
2681 2912 1.361204 TCTGCATCCTCCAAAGTCCA 58.639 50.000 0.00 0.00 0.00 4.02
2682 2913 2.725221 ATCTGCATCCTCCAAAGTCC 57.275 50.000 0.00 0.00 0.00 3.85
2683 2914 4.574013 CACTAATCTGCATCCTCCAAAGTC 59.426 45.833 0.00 0.00 0.00 3.01
2684 2915 4.521146 CACTAATCTGCATCCTCCAAAGT 58.479 43.478 0.00 0.00 0.00 2.66
2685 2916 3.881688 CCACTAATCTGCATCCTCCAAAG 59.118 47.826 0.00 0.00 0.00 2.77
2706 2937 2.740714 GCCGTCGTGTCATCTTGCC 61.741 63.158 0.00 0.00 0.00 4.52
2708 2939 0.716108 GAAGCCGTCGTGTCATCTTG 59.284 55.000 0.00 0.00 0.00 3.02
2710 2941 1.215647 GGAAGCCGTCGTGTCATCT 59.784 57.895 0.00 0.00 0.00 2.90
2711 2942 1.810030 GGGAAGCCGTCGTGTCATC 60.810 63.158 0.00 0.00 0.00 2.92
2712 2943 2.264794 GGGAAGCCGTCGTGTCAT 59.735 61.111 0.00 0.00 0.00 3.06
2713 2944 3.998672 GGGGAAGCCGTCGTGTCA 61.999 66.667 0.00 0.00 0.00 3.58
2719 2950 2.557372 TTTTTGCGGGGAAGCCGTC 61.557 57.895 0.00 0.00 36.02 4.79
2720 2951 2.519780 TTTTTGCGGGGAAGCCGT 60.520 55.556 0.00 0.00 36.02 5.68
2751 3274 2.477972 TTCAGAGAGCAGCCGTCGTG 62.478 60.000 0.00 0.00 0.00 4.35
2757 3280 3.533606 TGTATTCTTCAGAGAGCAGCC 57.466 47.619 0.00 0.00 32.44 4.85
2856 3596 0.723981 GACAAAGGTGCTCGATCTGC 59.276 55.000 0.00 0.00 0.00 4.26
2905 3645 6.481134 CATCAATTATTCAACCACAGACGAG 58.519 40.000 0.00 0.00 0.00 4.18
3041 3812 9.322773 CATTCTATCATTAGATGCGTAATGGAT 57.677 33.333 11.34 7.72 39.79 3.41
3086 3857 9.109393 TGCATATATAAGTTTTGTCTGAAGTCC 57.891 33.333 0.00 0.00 0.00 3.85
3113 3884 9.047371 GCATACTCCCTTCTATTCTTTTTACTC 57.953 37.037 0.00 0.00 0.00 2.59
3114 3885 7.993758 GGCATACTCCCTTCTATTCTTTTTACT 59.006 37.037 0.00 0.00 0.00 2.24
3115 3886 7.773690 TGGCATACTCCCTTCTATTCTTTTTAC 59.226 37.037 0.00 0.00 0.00 2.01
3116 3887 7.867921 TGGCATACTCCCTTCTATTCTTTTTA 58.132 34.615 0.00 0.00 0.00 1.52
3117 3888 6.731467 TGGCATACTCCCTTCTATTCTTTTT 58.269 36.000 0.00 0.00 0.00 1.94
3118 3889 6.327386 TGGCATACTCCCTTCTATTCTTTT 57.673 37.500 0.00 0.00 0.00 2.27
3119 3890 5.975988 TGGCATACTCCCTTCTATTCTTT 57.024 39.130 0.00 0.00 0.00 2.52
3120 3891 7.633018 TTATGGCATACTCCCTTCTATTCTT 57.367 36.000 6.72 0.00 0.00 2.52
3121 3892 7.633018 TTTATGGCATACTCCCTTCTATTCT 57.367 36.000 6.72 0.00 0.00 2.40
3122 3893 6.372937 GCTTTATGGCATACTCCCTTCTATTC 59.627 42.308 6.72 0.00 0.00 1.75
3123 3894 6.044871 AGCTTTATGGCATACTCCCTTCTATT 59.955 38.462 6.72 0.00 34.17 1.73
3124 3895 5.549619 AGCTTTATGGCATACTCCCTTCTAT 59.450 40.000 6.72 0.00 34.17 1.98
3125 3896 4.907875 AGCTTTATGGCATACTCCCTTCTA 59.092 41.667 6.72 0.00 34.17 2.10
3126 3897 3.718956 AGCTTTATGGCATACTCCCTTCT 59.281 43.478 6.72 0.00 34.17 2.85
3127 3898 4.092116 AGCTTTATGGCATACTCCCTTC 57.908 45.455 6.72 0.00 34.17 3.46
3128 3899 4.079787 TGAAGCTTTATGGCATACTCCCTT 60.080 41.667 6.72 7.52 34.17 3.95
3129 3900 3.459598 TGAAGCTTTATGGCATACTCCCT 59.540 43.478 6.72 0.00 34.17 4.20
3130 3901 3.820557 TGAAGCTTTATGGCATACTCCC 58.179 45.455 6.72 0.00 34.17 4.30
3131 3902 4.457257 GGATGAAGCTTTATGGCATACTCC 59.543 45.833 8.68 0.00 34.17 3.85
3132 3903 5.065914 TGGATGAAGCTTTATGGCATACTC 58.934 41.667 8.68 0.00 34.17 2.59
3133 3904 5.052693 TGGATGAAGCTTTATGGCATACT 57.947 39.130 8.68 0.00 34.17 2.12
3134 3905 5.523369 GTTGGATGAAGCTTTATGGCATAC 58.477 41.667 8.68 4.46 34.17 2.39
3135 3906 4.275689 CGTTGGATGAAGCTTTATGGCATA 59.724 41.667 8.68 2.32 34.17 3.14
3136 3907 3.067180 CGTTGGATGAAGCTTTATGGCAT 59.933 43.478 8.68 4.88 34.17 4.40
3137 3908 2.423185 CGTTGGATGAAGCTTTATGGCA 59.577 45.455 8.68 0.00 34.17 4.92
3138 3909 2.796032 GCGTTGGATGAAGCTTTATGGC 60.796 50.000 8.68 1.00 0.00 4.40
3139 3910 2.423185 TGCGTTGGATGAAGCTTTATGG 59.577 45.455 8.68 0.00 0.00 2.74
3140 3911 3.763097 TGCGTTGGATGAAGCTTTATG 57.237 42.857 8.68 0.00 0.00 1.90
3141 3912 4.675510 CAATGCGTTGGATGAAGCTTTAT 58.324 39.130 11.00 2.91 0.00 1.40
3142 3913 3.673052 GCAATGCGTTGGATGAAGCTTTA 60.673 43.478 19.93 0.00 35.83 1.85
3143 3914 2.927871 GCAATGCGTTGGATGAAGCTTT 60.928 45.455 19.93 0.00 35.83 3.51
3144 3915 1.403249 GCAATGCGTTGGATGAAGCTT 60.403 47.619 19.93 0.00 35.83 3.74
3145 3916 0.171903 GCAATGCGTTGGATGAAGCT 59.828 50.000 19.93 0.00 35.83 3.74
3146 3917 0.171903 AGCAATGCGTTGGATGAAGC 59.828 50.000 19.93 3.87 35.83 3.86
3147 3918 1.904144 CAGCAATGCGTTGGATGAAG 58.096 50.000 19.93 0.00 35.83 3.02
3148 3919 0.109179 GCAGCAATGCGTTGGATGAA 60.109 50.000 19.93 0.00 35.83 2.57
3149 3920 0.961857 AGCAGCAATGCGTTGGATGA 60.962 50.000 19.93 0.00 40.27 2.92
3150 3921 0.108992 AAGCAGCAATGCGTTGGATG 60.109 50.000 19.93 10.63 40.27 3.51
3157 3928 0.376152 CTCACCTAAGCAGCAATGCG 59.624 55.000 0.00 0.00 40.27 4.73
3202 3973 7.812669 ACAAAAGTTAAGCACTTATACATTGCC 59.187 33.333 0.00 0.00 45.77 4.52
3264 4035 5.183228 GCCTACTAACCAGTGCATAAAAGA 58.817 41.667 0.00 0.00 36.14 2.52
3269 4040 4.771114 ATTGCCTACTAACCAGTGCATA 57.229 40.909 0.00 0.00 34.66 3.14
3277 4048 6.183360 GGACATGTGTAAATTGCCTACTAACC 60.183 42.308 1.15 0.00 0.00 2.85
3296 4068 8.192774 AGAAACAATGCTAAATGTATGGACATG 58.807 33.333 0.00 0.00 45.93 3.21
3308 4080 5.305585 ACCTCGAGAAGAAACAATGCTAAA 58.694 37.500 15.71 0.00 0.00 1.85
3325 4097 5.050126 AGAGAGTATTATGGTGACCTCGA 57.950 43.478 2.11 0.00 0.00 4.04
3381 4153 3.353342 TGCCACATATGCACACCAA 57.647 47.368 1.58 0.00 32.85 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.