Multiple sequence alignment - TraesCS3A01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G423600 chr3A 100.000 7531 0 0 1 7531 665988146 665980616 0.000000e+00 13908.0
1 TraesCS3A01G423600 chr3A 94.660 206 10 1 736 940 12481040 12480835 1.220000e-82 318.0
2 TraesCS3A01G423600 chr3A 92.718 206 12 3 737 941 81379321 81379118 2.060000e-75 294.0
3 TraesCS3A01G423600 chr3A 91.204 216 18 1 727 941 740915180 740915395 7.390000e-75 292.0
4 TraesCS3A01G423600 chr3A 96.000 50 1 1 1184 1233 632072594 632072642 6.260000e-11 80.5
5 TraesCS3A01G423600 chr3D 95.724 4537 149 19 1850 6347 531375448 531370918 0.000000e+00 7262.0
6 TraesCS3A01G423600 chr3D 88.191 1863 159 36 2761 4592 426407744 426409576 0.000000e+00 2165.0
7 TraesCS3A01G423600 chr3D 90.965 1140 83 12 4596 5725 426409621 426410750 0.000000e+00 1517.0
8 TraesCS3A01G423600 chr3D 90.317 1136 71 15 6349 7469 531370713 531369602 0.000000e+00 1452.0
9 TraesCS3A01G423600 chr3D 87.952 1162 94 21 3092 4216 531356653 531357805 0.000000e+00 1328.0
10 TraesCS3A01G423600 chr3D 87.585 886 80 11 4596 5466 531358244 531359114 0.000000e+00 1000.0
11 TraesCS3A01G423600 chr3D 89.736 643 44 14 5718 6347 426412148 426412781 0.000000e+00 802.0
12 TraesCS3A01G423600 chr3D 89.375 640 56 8 971 1601 531376097 531375461 0.000000e+00 795.0
13 TraesCS3A01G423600 chr3D 86.345 725 60 20 26 740 531376871 531376176 0.000000e+00 754.0
14 TraesCS3A01G423600 chr3D 84.867 641 65 19 5514 6134 531359119 531359747 1.070000e-172 617.0
15 TraesCS3A01G423600 chr3D 83.079 721 61 28 6343 7045 531360201 531360878 3.890000e-167 599.0
16 TraesCS3A01G423600 chr3D 87.007 431 52 3 7001 7431 426434430 426434856 4.090000e-132 483.0
17 TraesCS3A01G423600 chr3D 82.100 581 68 16 1852 2421 531355210 531355765 1.480000e-126 464.0
18 TraesCS3A01G423600 chr3D 86.098 410 57 0 7069 7478 531362126 531362535 6.940000e-120 442.0
19 TraesCS3A01G423600 chr3D 87.467 383 28 11 4214 4592 531357833 531358199 2.510000e-114 424.0
20 TraesCS3A01G423600 chr3D 85.593 354 35 11 6343 6694 426413239 426413578 2.580000e-94 357.0
21 TraesCS3A01G423600 chr3D 86.722 241 27 2 6687 6926 426434081 426434317 5.800000e-66 263.0
22 TraesCS3A01G423600 chr3D 87.981 208 25 0 1231 1438 531354867 531355074 5.840000e-61 246.0
23 TraesCS3A01G423600 chr3D 88.265 196 20 1 6152 6347 531359811 531360003 1.630000e-56 231.0
24 TraesCS3A01G423600 chr3D 83.902 205 29 3 221 422 531354241 531354444 7.710000e-45 193.0
25 TraesCS3A01G423600 chr3D 100.000 31 0 0 6927 6957 426434332 426434362 2.940000e-04 58.4
26 TraesCS3A01G423600 chr3B 84.586 2848 291 86 1854 4592 702849785 702846977 0.000000e+00 2691.0
27 TraesCS3A01G423600 chr3B 93.039 1767 89 18 4596 6347 702697363 702695616 0.000000e+00 2551.0
28 TraesCS3A01G423600 chr3B 89.343 1614 140 21 4739 6325 702846727 702845119 0.000000e+00 1999.0
29 TraesCS3A01G423600 chr3B 85.442 1731 175 34 2516 4216 702699513 702697830 0.000000e+00 1729.0
30 TraesCS3A01G423600 chr3B 92.422 1148 65 4 6349 7480 702695411 702694270 0.000000e+00 1618.0
31 TraesCS3A01G423600 chr3B 83.504 1267 137 32 1231 2457 702700873 702699639 0.000000e+00 1116.0
32 TraesCS3A01G423600 chr3B 83.955 1153 131 21 6349 7479 702827912 702826792 0.000000e+00 1055.0
33 TraesCS3A01G423600 chr3B 83.936 1133 116 24 2202 3299 702834644 702833543 0.000000e+00 1024.0
34 TraesCS3A01G423600 chr3B 88.595 833 86 8 4746 5570 702829721 702828890 0.000000e+00 1003.0
35 TraesCS3A01G423600 chr3B 86.674 893 80 17 3717 4575 702830844 702829957 0.000000e+00 953.0
36 TraesCS3A01G423600 chr3B 85.337 757 74 10 6746 7480 702844432 702843691 0.000000e+00 749.0
37 TraesCS3A01G423600 chr3B 85.817 698 58 17 5686 6347 702828841 702828149 0.000000e+00 702.0
38 TraesCS3A01G423600 chr3B 90.529 454 25 7 1 454 702859253 702858818 1.090000e-162 584.0
39 TraesCS3A01G423600 chr3B 92.432 370 27 1 3303 3671 702831215 702830846 1.860000e-145 527.0
40 TraesCS3A01G423600 chr3B 84.699 549 45 29 4214 4731 702847346 702846806 5.210000e-141 512.0
41 TraesCS3A01G423600 chr3B 87.198 414 38 9 6349 6760 702844852 702844452 2.480000e-124 457.0
42 TraesCS3A01G423600 chr3B 87.263 369 31 11 4227 4592 702697763 702697408 2.530000e-109 407.0
43 TraesCS3A01G423600 chr3B 87.054 224 27 2 1231 1453 702858263 702858041 1.250000e-62 252.0
44 TraesCS3A01G423600 chr3B 83.665 251 29 4 1622 1869 702835391 702835150 7.600000e-55 226.0
45 TraesCS3A01G423600 chr3B 89.888 178 12 5 948 1125 702836126 702835955 2.730000e-54 224.0
46 TraesCS3A01G423600 chr3B 83.871 248 24 8 240 483 702836561 702836326 9.840000e-54 222.0
47 TraesCS3A01G423600 chr3B 88.462 156 17 1 971 1125 702858525 702858370 3.590000e-43 187.0
48 TraesCS3A01G423600 chr2D 89.276 1147 95 16 3092 4216 46686227 46687367 0.000000e+00 1411.0
49 TraesCS3A01G423600 chr2D 86.645 614 50 16 4596 5193 46687809 46688406 0.000000e+00 651.0
50 TraesCS3A01G423600 chr2D 85.860 587 52 18 5421 5988 46693969 46694543 5.030000e-166 595.0
51 TraesCS3A01G423600 chr2D 82.074 569 65 18 1864 2421 46684846 46685388 1.150000e-122 451.0
52 TraesCS3A01G423600 chr2D 87.565 386 25 10 4214 4592 46687395 46687764 6.980000e-115 425.0
53 TraesCS3A01G423600 chr2D 90.291 206 20 0 5187 5392 46693765 46693970 3.460000e-68 270.0
54 TraesCS3A01G423600 chr2D 87.671 219 22 4 1224 1438 46684420 46684637 4.510000e-62 250.0
55 TraesCS3A01G423600 chr2D 96.000 50 2 0 1184 1233 593800685 593800636 1.740000e-11 82.4
56 TraesCS3A01G423600 chr4B 88.654 520 52 4 3704 4216 622125218 622124699 1.780000e-175 627.0
57 TraesCS3A01G423600 chr4B 94.231 52 3 0 7480 7531 10457567 10457618 6.260000e-11 80.5
58 TraesCS3A01G423600 chr6B 92.788 208 15 0 737 944 402580112 402579905 1.230000e-77 302.0
59 TraesCS3A01G423600 chr6A 94.000 200 10 2 740 939 81100809 81100612 1.230000e-77 302.0
60 TraesCS3A01G423600 chr6A 93.532 201 12 1 740 940 78961331 78961132 1.590000e-76 298.0
61 TraesCS3A01G423600 chr5A 92.823 209 12 3 736 943 330246946 330246740 4.420000e-77 300.0
62 TraesCS3A01G423600 chr5A 91.866 209 16 1 737 944 391547124 391546916 2.660000e-74 291.0
63 TraesCS3A01G423600 chr5A 91.866 209 15 2 735 942 624607283 624607076 2.660000e-74 291.0
64 TraesCS3A01G423600 chr5A 96.078 51 2 0 7481 7531 688279181 688279231 4.840000e-12 84.2
65 TraesCS3A01G423600 chr7A 93.532 201 10 3 740 940 69160972 69160775 5.710000e-76 296.0
66 TraesCS3A01G423600 chr7A 92.233 206 13 3 737 941 534534032 534533829 9.560000e-74 289.0
67 TraesCS3A01G423600 chr7A 94.444 54 2 1 1181 1233 613771455 613771402 1.740000e-11 82.4
68 TraesCS3A01G423600 chr1A 91.827 208 13 4 736 942 90775112 90775316 3.440000e-73 287.0
69 TraesCS3A01G423600 chr1A 93.617 47 2 1 7481 7527 276653555 276653600 1.360000e-07 69.4
70 TraesCS3A01G423600 chr4A 91.346 208 16 2 737 944 311489834 311489629 4.450000e-72 283.0
71 TraesCS3A01G423600 chr4A 92.857 56 2 2 1178 1232 563238657 563238603 6.260000e-11 80.5
72 TraesCS3A01G423600 chr4A 96.000 50 1 1 1184 1233 658238129 658238177 6.260000e-11 80.5
73 TraesCS3A01G423600 chr2B 98.000 50 1 0 7481 7530 690966877 690966828 3.740000e-13 87.9
74 TraesCS3A01G423600 chrUn 94.444 54 3 0 1180 1233 328115667 328115720 4.840000e-12 84.2
75 TraesCS3A01G423600 chr7D 97.917 48 1 0 1185 1232 23545176 23545129 4.840000e-12 84.2
76 TraesCS3A01G423600 chr7B 96.078 51 2 0 7481 7531 680407770 680407720 4.840000e-12 84.2
77 TraesCS3A01G423600 chr1B 95.918 49 2 0 7480 7528 563748679 563748727 6.260000e-11 80.5
78 TraesCS3A01G423600 chr1B 94.231 52 2 1 7481 7531 483380446 483380497 2.250000e-10 78.7
79 TraesCS3A01G423600 chr5B 86.111 72 5 4 1165 1233 593214881 593214950 1.050000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G423600 chr3A 665980616 665988146 7530 True 13908.000000 13908 100.000000 1 7531 1 chr3A.!!$R3 7530
1 TraesCS3A01G423600 chr3D 531369602 531376871 7269 True 2565.750000 7262 90.440250 26 7469 4 chr3D.!!$R1 7443
2 TraesCS3A01G423600 chr3D 426407744 426413578 5834 False 1210.250000 2165 88.621250 2761 6694 4 chr3D.!!$F1 3933
3 TraesCS3A01G423600 chr3D 531354241 531362535 8294 False 554.400000 1328 85.929600 221 7478 10 chr3D.!!$F3 7257
4 TraesCS3A01G423600 chr3D 426434081 426434856 775 False 268.133333 483 91.243000 6687 7431 3 chr3D.!!$F2 744
5 TraesCS3A01G423600 chr3B 702694270 702700873 6603 True 1484.200000 2551 88.334000 1231 7480 5 chr3B.!!$R1 6249
6 TraesCS3A01G423600 chr3B 702843691 702849785 6094 True 1281.600000 2691 86.232600 1854 7480 5 chr3B.!!$R3 5626
7 TraesCS3A01G423600 chr3B 702826792 702836561 9769 True 659.555556 1055 86.537000 240 7479 9 chr3B.!!$R2 7239
8 TraesCS3A01G423600 chr3B 702858041 702859253 1212 True 341.000000 584 88.681667 1 1453 3 chr3B.!!$R4 1452
9 TraesCS3A01G423600 chr2D 46684420 46688406 3986 False 637.600000 1411 86.646200 1224 5193 5 chr2D.!!$F1 3969
10 TraesCS3A01G423600 chr2D 46693765 46694543 778 False 432.500000 595 88.075500 5187 5988 2 chr2D.!!$F2 801
11 TraesCS3A01G423600 chr4B 622124699 622125218 519 True 627.000000 627 88.654000 3704 4216 1 chr4B.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 814 0.178958 TCCTAGAATCGCCCCTCTCC 60.179 60.000 0.00 0.0 0.00 3.71 F
1442 1762 0.108138 AGTTGCTCCTTTCGATCCCG 60.108 55.000 0.00 0.0 37.07 5.14 F
2112 2750 0.035820 TCCCGCGGAACTGCTAAATT 60.036 50.000 30.73 0.0 0.00 1.82 F
2703 3717 1.134220 TCGCCGCTTTCAGGGATTTAT 60.134 47.619 0.00 0.0 0.00 1.40 F
2705 3719 1.609072 GCCGCTTTCAGGGATTTATCC 59.391 52.381 0.00 0.0 46.41 2.59 F
4080 7488 3.253230 AGTTTGCACTTCACAACTTTGC 58.747 40.909 0.00 0.0 0.00 3.68 F
5050 8721 0.907486 TCTCCATCTTGTGAGCCCTG 59.093 55.000 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 2068 0.111061 AGGAACTGCATGTCTGGCAA 59.889 50.000 0.00 0.00 41.39 4.52 R
2684 3698 1.264288 GATAAATCCCTGAAAGCGGCG 59.736 52.381 0.51 0.51 0.00 6.46 R
3713 7120 0.387565 TTTTGAAAGCGGGCTCCAAC 59.612 50.000 7.62 0.00 0.00 3.77 R
3716 7123 2.068519 CAAATTTTGAAAGCGGGCTCC 58.931 47.619 2.88 0.00 0.00 4.70 R
4575 8061 2.826428 ACATCGGACATACATGCTGTC 58.174 47.619 16.81 16.81 41.83 3.51 R
5246 8919 0.037590 TGTTGCTAACGCCCCATCTT 59.962 50.000 0.00 0.00 34.43 2.40 R
6815 12574 1.005630 GCAGAGAACACCGTGAGCT 60.006 57.895 5.28 1.50 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 99 0.531200 CCGCCCTATAAGATCCCGTC 59.469 60.000 0.00 0.00 0.00 4.79
112 115 1.594293 GTCCCCGCATCACCATACG 60.594 63.158 0.00 0.00 0.00 3.06
117 120 0.461163 CCGCATCACCATACGTTCCA 60.461 55.000 0.00 0.00 0.00 3.53
148 151 2.682836 GCCAAGATCTAGATTCGAGCC 58.317 52.381 6.70 0.00 0.00 4.70
150 153 3.493350 GCCAAGATCTAGATTCGAGCCAA 60.493 47.826 6.70 0.00 0.00 4.52
163 166 2.369860 TCGAGCCAATGGAGCTGAATAT 59.630 45.455 2.05 0.00 41.75 1.28
168 171 6.378661 AGCCAATGGAGCTGAATATGTATA 57.621 37.500 2.05 0.00 39.69 1.47
172 175 6.311445 CCAATGGAGCTGAATATGTATACGAC 59.689 42.308 0.00 0.00 0.00 4.34
219 222 2.287308 GCAGGTAGCTCATAGAGTCGTG 60.287 54.545 0.00 0.00 41.15 4.35
224 227 2.660572 AGCTCATAGAGTCGTGGTCAT 58.339 47.619 0.00 0.00 31.39 3.06
244 247 4.112341 GCCGTACTGTCCGACGCT 62.112 66.667 0.00 0.00 37.75 5.07
460 475 1.401018 GCGGACTGAAAATGAAACCCG 60.401 52.381 0.00 0.00 38.79 5.28
496 511 2.087646 GGTTTCTCAGTTCTCATGCCC 58.912 52.381 0.00 0.00 0.00 5.36
500 515 1.347707 TCTCAGTTCTCATGCCCGTTT 59.652 47.619 0.00 0.00 0.00 3.60
550 565 1.022735 ACCGTGTGGAGAGCTATACG 58.977 55.000 0.00 0.00 39.24 3.06
566 581 6.159988 AGCTATACGGAATTCTTATGCTCAC 58.840 40.000 5.23 0.00 0.00 3.51
573 594 5.437060 GGAATTCTTATGCTCACCTACCAA 58.563 41.667 5.23 0.00 0.00 3.67
604 627 2.631062 TGTAACCGTGTGGAGAATCACT 59.369 45.455 0.00 0.00 38.40 3.41
605 628 3.827876 TGTAACCGTGTGGAGAATCACTA 59.172 43.478 0.00 0.00 38.40 2.74
606 629 3.314541 AACCGTGTGGAGAATCACTAC 57.685 47.619 0.00 0.00 38.40 2.73
684 714 2.594592 AAGTCTGTGGCCGCCAAC 60.595 61.111 15.39 9.30 34.18 3.77
740 773 1.905215 CCATCCCAGAGCAGTATAGGG 59.095 57.143 0.00 0.00 40.98 3.53
741 774 1.905215 CATCCCAGAGCAGTATAGGGG 59.095 57.143 0.00 0.00 40.02 4.79
742 775 0.471971 TCCCAGAGCAGTATAGGGGC 60.472 60.000 0.00 0.00 40.02 5.80
743 776 1.484444 CCCAGAGCAGTATAGGGGCC 61.484 65.000 0.00 0.00 35.83 5.80
744 777 0.764369 CCAGAGCAGTATAGGGGCCA 60.764 60.000 4.39 0.00 0.00 5.36
745 778 0.683973 CAGAGCAGTATAGGGGCCAG 59.316 60.000 4.39 0.00 0.00 4.85
746 779 0.266152 AGAGCAGTATAGGGGCCAGT 59.734 55.000 4.39 0.00 0.00 4.00
747 780 1.132500 GAGCAGTATAGGGGCCAGTT 58.868 55.000 4.39 0.00 0.00 3.16
748 781 1.070914 GAGCAGTATAGGGGCCAGTTC 59.929 57.143 4.39 0.00 0.00 3.01
749 782 1.132500 GCAGTATAGGGGCCAGTTCT 58.868 55.000 4.39 0.00 0.00 3.01
750 783 1.490910 GCAGTATAGGGGCCAGTTCTT 59.509 52.381 4.39 0.00 0.00 2.52
751 784 2.092375 GCAGTATAGGGGCCAGTTCTTT 60.092 50.000 4.39 0.00 0.00 2.52
752 785 3.624959 GCAGTATAGGGGCCAGTTCTTTT 60.625 47.826 4.39 0.00 0.00 2.27
753 786 4.200092 CAGTATAGGGGCCAGTTCTTTTC 58.800 47.826 4.39 0.00 0.00 2.29
754 787 2.420058 ATAGGGGCCAGTTCTTTTCG 57.580 50.000 4.39 0.00 0.00 3.46
755 788 0.326927 TAGGGGCCAGTTCTTTTCGG 59.673 55.000 4.39 0.00 0.00 4.30
756 789 2.636412 GGGGCCAGTTCTTTTCGGC 61.636 63.158 4.39 0.00 44.10 5.54
757 790 2.561373 GGCCAGTTCTTTTCGGCG 59.439 61.111 0.00 0.00 45.85 6.46
758 791 1.964373 GGCCAGTTCTTTTCGGCGA 60.964 57.895 4.99 4.99 45.85 5.54
759 792 1.305930 GGCCAGTTCTTTTCGGCGAT 61.306 55.000 11.76 0.00 45.85 4.58
760 793 0.521735 GCCAGTTCTTTTCGGCGATT 59.478 50.000 11.76 0.00 34.26 3.34
761 794 1.465856 GCCAGTTCTTTTCGGCGATTC 60.466 52.381 11.76 0.00 34.26 2.52
762 795 2.076863 CCAGTTCTTTTCGGCGATTCT 58.923 47.619 11.76 0.35 0.00 2.40
763 796 2.094417 CCAGTTCTTTTCGGCGATTCTC 59.906 50.000 11.76 0.00 0.00 2.87
764 797 2.094417 CAGTTCTTTTCGGCGATTCTCC 59.906 50.000 11.76 0.00 0.00 3.71
765 798 2.028020 AGTTCTTTTCGGCGATTCTCCT 60.028 45.455 11.76 0.00 0.00 3.69
766 799 3.194968 AGTTCTTTTCGGCGATTCTCCTA 59.805 43.478 11.76 0.00 0.00 2.94
767 800 3.438297 TCTTTTCGGCGATTCTCCTAG 57.562 47.619 11.76 0.94 0.00 3.02
768 801 3.021695 TCTTTTCGGCGATTCTCCTAGA 58.978 45.455 11.76 3.39 0.00 2.43
769 802 3.446161 TCTTTTCGGCGATTCTCCTAGAA 59.554 43.478 11.76 0.00 38.78 2.10
770 803 4.099573 TCTTTTCGGCGATTCTCCTAGAAT 59.900 41.667 11.76 1.85 46.84 2.40
777 810 2.407340 ATTCTCCTAGAATCGCCCCT 57.593 50.000 0.00 0.00 40.75 4.79
778 811 1.705873 TTCTCCTAGAATCGCCCCTC 58.294 55.000 0.00 0.00 0.00 4.30
779 812 0.854218 TCTCCTAGAATCGCCCCTCT 59.146 55.000 0.00 0.00 0.00 3.69
780 813 1.202952 TCTCCTAGAATCGCCCCTCTC 60.203 57.143 0.00 0.00 0.00 3.20
781 814 0.178958 TCCTAGAATCGCCCCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
782 815 1.188871 CCTAGAATCGCCCCTCTCCC 61.189 65.000 0.00 0.00 0.00 4.30
783 816 1.152312 TAGAATCGCCCCTCTCCCC 60.152 63.158 0.00 0.00 0.00 4.81
784 817 1.956639 TAGAATCGCCCCTCTCCCCA 61.957 60.000 0.00 0.00 0.00 4.96
785 818 2.286121 AATCGCCCCTCTCCCCAA 60.286 61.111 0.00 0.00 0.00 4.12
786 819 2.610532 GAATCGCCCCTCTCCCCAAC 62.611 65.000 0.00 0.00 0.00 3.77
787 820 3.642741 ATCGCCCCTCTCCCCAACT 62.643 63.158 0.00 0.00 0.00 3.16
788 821 3.330720 CGCCCCTCTCCCCAACTT 61.331 66.667 0.00 0.00 0.00 2.66
789 822 2.677848 GCCCCTCTCCCCAACTTC 59.322 66.667 0.00 0.00 0.00 3.01
790 823 1.925972 GCCCCTCTCCCCAACTTCT 60.926 63.158 0.00 0.00 0.00 2.85
791 824 0.620700 GCCCCTCTCCCCAACTTCTA 60.621 60.000 0.00 0.00 0.00 2.10
792 825 1.205055 CCCCTCTCCCCAACTTCTAC 58.795 60.000 0.00 0.00 0.00 2.59
793 826 1.205055 CCCTCTCCCCAACTTCTACC 58.795 60.000 0.00 0.00 0.00 3.18
794 827 1.554822 CCCTCTCCCCAACTTCTACCA 60.555 57.143 0.00 0.00 0.00 3.25
795 828 2.266279 CCTCTCCCCAACTTCTACCAA 58.734 52.381 0.00 0.00 0.00 3.67
796 829 2.642807 CCTCTCCCCAACTTCTACCAAA 59.357 50.000 0.00 0.00 0.00 3.28
797 830 3.073946 CCTCTCCCCAACTTCTACCAAAA 59.926 47.826 0.00 0.00 0.00 2.44
798 831 4.263949 CCTCTCCCCAACTTCTACCAAAAT 60.264 45.833 0.00 0.00 0.00 1.82
799 832 4.918588 TCTCCCCAACTTCTACCAAAATC 58.081 43.478 0.00 0.00 0.00 2.17
800 833 3.681593 TCCCCAACTTCTACCAAAATCG 58.318 45.455 0.00 0.00 0.00 3.34
801 834 2.163613 CCCCAACTTCTACCAAAATCGC 59.836 50.000 0.00 0.00 0.00 4.58
802 835 2.163613 CCCAACTTCTACCAAAATCGCC 59.836 50.000 0.00 0.00 0.00 5.54
803 836 2.817258 CCAACTTCTACCAAAATCGCCA 59.183 45.455 0.00 0.00 0.00 5.69
804 837 3.365969 CCAACTTCTACCAAAATCGCCAC 60.366 47.826 0.00 0.00 0.00 5.01
805 838 3.418684 ACTTCTACCAAAATCGCCACT 57.581 42.857 0.00 0.00 0.00 4.00
806 839 3.335579 ACTTCTACCAAAATCGCCACTC 58.664 45.455 0.00 0.00 0.00 3.51
807 840 2.396590 TCTACCAAAATCGCCACTCC 57.603 50.000 0.00 0.00 0.00 3.85
808 841 1.626321 TCTACCAAAATCGCCACTCCA 59.374 47.619 0.00 0.00 0.00 3.86
809 842 2.238646 TCTACCAAAATCGCCACTCCAT 59.761 45.455 0.00 0.00 0.00 3.41
810 843 2.799126 ACCAAAATCGCCACTCCATA 57.201 45.000 0.00 0.00 0.00 2.74
811 844 3.297134 ACCAAAATCGCCACTCCATAT 57.703 42.857 0.00 0.00 0.00 1.78
812 845 4.431416 ACCAAAATCGCCACTCCATATA 57.569 40.909 0.00 0.00 0.00 0.86
813 846 4.985538 ACCAAAATCGCCACTCCATATAT 58.014 39.130 0.00 0.00 0.00 0.86
814 847 5.385198 ACCAAAATCGCCACTCCATATATT 58.615 37.500 0.00 0.00 0.00 1.28
815 848 5.833131 ACCAAAATCGCCACTCCATATATTT 59.167 36.000 0.00 0.00 0.00 1.40
816 849 6.323739 ACCAAAATCGCCACTCCATATATTTT 59.676 34.615 0.00 0.00 0.00 1.82
817 850 7.147742 ACCAAAATCGCCACTCCATATATTTTT 60.148 33.333 0.00 0.00 0.00 1.94
882 915 6.515272 AAAAACATATGAAGTGGCGATTCT 57.485 33.333 10.38 0.00 0.00 2.40
883 916 5.490139 AAACATATGAAGTGGCGATTCTG 57.510 39.130 10.38 0.00 0.00 3.02
884 917 3.470709 ACATATGAAGTGGCGATTCTGG 58.529 45.455 10.38 0.00 0.00 3.86
885 918 3.134623 ACATATGAAGTGGCGATTCTGGA 59.865 43.478 10.38 0.00 0.00 3.86
886 919 2.787473 ATGAAGTGGCGATTCTGGAA 57.213 45.000 0.00 0.00 0.00 3.53
887 920 2.559698 TGAAGTGGCGATTCTGGAAA 57.440 45.000 0.00 0.00 0.00 3.13
888 921 2.857483 TGAAGTGGCGATTCTGGAAAA 58.143 42.857 0.00 0.00 0.00 2.29
889 922 3.218453 TGAAGTGGCGATTCTGGAAAAA 58.782 40.909 0.00 0.00 0.00 1.94
890 923 3.253188 TGAAGTGGCGATTCTGGAAAAAG 59.747 43.478 0.00 0.00 0.00 2.27
891 924 1.541588 AGTGGCGATTCTGGAAAAAGC 59.458 47.619 0.00 0.00 0.00 3.51
892 925 1.541588 GTGGCGATTCTGGAAAAAGCT 59.458 47.619 0.00 0.00 0.00 3.74
893 926 1.541147 TGGCGATTCTGGAAAAAGCTG 59.459 47.619 0.00 0.00 0.00 4.24
894 927 1.135286 GGCGATTCTGGAAAAAGCTGG 60.135 52.381 0.00 0.00 0.00 4.85
895 928 1.135286 GCGATTCTGGAAAAAGCTGGG 60.135 52.381 0.00 0.00 0.00 4.45
896 929 1.474077 CGATTCTGGAAAAAGCTGGGG 59.526 52.381 0.00 0.00 0.00 4.96
897 930 2.807676 GATTCTGGAAAAAGCTGGGGA 58.192 47.619 0.00 0.00 0.00 4.81
898 931 2.292828 TTCTGGAAAAAGCTGGGGAG 57.707 50.000 0.00 0.00 0.00 4.30
899 932 0.405585 TCTGGAAAAAGCTGGGGAGG 59.594 55.000 0.00 0.00 0.00 4.30
900 933 0.613012 CTGGAAAAAGCTGGGGAGGG 60.613 60.000 0.00 0.00 0.00 4.30
901 934 1.305297 GGAAAAAGCTGGGGAGGGG 60.305 63.158 0.00 0.00 0.00 4.79
902 935 1.305297 GAAAAAGCTGGGGAGGGGG 60.305 63.158 0.00 0.00 0.00 5.40
916 949 3.965660 GGGGGCGATTCTGGTAGA 58.034 61.111 0.00 0.00 0.00 2.59
917 950 2.218066 GGGGGCGATTCTGGTAGAA 58.782 57.895 0.00 0.00 38.78 2.10
918 951 0.765510 GGGGGCGATTCTGGTAGAAT 59.234 55.000 3.86 3.86 46.84 2.40
926 959 3.644966 ATTCTGGTAGAATCGCCCAAA 57.355 42.857 0.00 0.00 40.75 3.28
927 960 3.426787 TTCTGGTAGAATCGCCCAAAA 57.573 42.857 0.00 0.00 0.00 2.44
928 961 2.985896 TCTGGTAGAATCGCCCAAAAG 58.014 47.619 0.00 0.00 0.00 2.27
929 962 2.569853 TCTGGTAGAATCGCCCAAAAGA 59.430 45.455 0.00 0.00 0.00 2.52
930 963 3.008594 TCTGGTAGAATCGCCCAAAAGAA 59.991 43.478 0.00 0.00 0.00 2.52
931 964 3.078837 TGGTAGAATCGCCCAAAAGAAC 58.921 45.455 0.00 0.00 0.00 3.01
932 965 3.244770 TGGTAGAATCGCCCAAAAGAACT 60.245 43.478 0.00 0.00 0.00 3.01
933 966 3.127030 GGTAGAATCGCCCAAAAGAACTG 59.873 47.826 0.00 0.00 0.00 3.16
934 967 2.162681 AGAATCGCCCAAAAGAACTGG 58.837 47.619 0.00 0.00 0.00 4.00
935 968 0.603065 AATCGCCCAAAAGAACTGGC 59.397 50.000 0.00 0.00 40.54 4.85
936 969 1.250840 ATCGCCCAAAAGAACTGGCC 61.251 55.000 0.00 0.00 40.87 5.36
937 970 2.931068 CGCCCAAAAGAACTGGCCC 61.931 63.158 0.00 0.00 40.87 5.80
938 971 1.533994 GCCCAAAAGAACTGGCCCT 60.534 57.895 0.00 0.00 37.94 5.19
939 972 0.251608 GCCCAAAAGAACTGGCCCTA 60.252 55.000 0.00 0.00 37.94 3.53
940 973 1.839424 CCCAAAAGAACTGGCCCTAG 58.161 55.000 0.00 0.00 32.10 3.02
941 974 1.075536 CCCAAAAGAACTGGCCCTAGT 59.924 52.381 0.00 0.00 32.10 2.57
978 1011 1.016627 CTCAGTCAGGCGAGAGAGAG 58.983 60.000 0.00 0.00 0.00 3.20
987 1093 2.776913 CGAGAGAGAGGGGGAACGC 61.777 68.421 0.00 0.00 45.13 4.84
1173 1489 0.716108 CACGCTCGGATTGTCTTCAC 59.284 55.000 0.00 0.00 0.00 3.18
1330 1646 3.053291 GGTGCCGCCATCAACGAA 61.053 61.111 0.00 0.00 37.17 3.85
1339 1658 0.179166 CCATCAACGAAACCGCCATG 60.179 55.000 0.00 0.00 0.00 3.66
1372 1692 3.066203 ACGAATTCAATCCGGCCATTAAC 59.934 43.478 2.24 0.00 0.00 2.01
1442 1762 0.108138 AGTTGCTCCTTTCGATCCCG 60.108 55.000 0.00 0.00 37.07 5.14
1448 1768 0.175760 TCCTTTCGATCCCGAGCAAG 59.824 55.000 0.00 0.00 46.39 4.01
1475 1795 1.554836 CCATTGGTGGGTGCATGTTA 58.445 50.000 0.00 0.00 42.11 2.41
1486 1806 2.182842 GCATGTTAGCTCCGGGCAG 61.183 63.158 15.92 1.71 44.79 4.85
1522 1842 2.289547 CAGGTAACAACACTCGGTTTGG 59.710 50.000 0.00 0.00 37.72 3.28
1524 1844 1.002142 GTAACAACACTCGGTTTGGCC 60.002 52.381 0.00 0.00 37.72 5.36
1601 1961 6.654582 TCAGCTTGAAGTTGCAATTAGTGATA 59.345 34.615 0.59 0.00 0.00 2.15
1602 1962 6.965500 CAGCTTGAAGTTGCAATTAGTGATAG 59.035 38.462 0.59 0.00 0.00 2.08
1664 2024 2.781431 TAGCTCGGGCCTCACTGACA 62.781 60.000 2.00 0.00 39.73 3.58
1669 2029 2.427320 GGCCTCACTGACAGCACA 59.573 61.111 1.25 0.00 0.00 4.57
1691 2068 1.735559 GCCGTAAGCCGACGACTTT 60.736 57.895 0.63 0.00 45.82 2.66
1693 2070 0.437295 CCGTAAGCCGACGACTTTTG 59.563 55.000 0.63 0.00 45.82 2.44
1694 2071 0.179258 CGTAAGCCGACGACTTTTGC 60.179 55.000 0.63 0.00 45.82 3.68
1712 2091 1.350684 TGCCAGACATGCAGTTCCTTA 59.649 47.619 0.00 0.00 34.05 2.69
1713 2092 2.025981 TGCCAGACATGCAGTTCCTTAT 60.026 45.455 0.00 0.00 34.05 1.73
1714 2093 3.199727 TGCCAGACATGCAGTTCCTTATA 59.800 43.478 0.00 0.00 34.05 0.98
1755 2134 9.573133 GACCAAAATATTCTGAAACAACCTATG 57.427 33.333 0.00 0.00 0.00 2.23
1827 2206 5.182001 AGTGTCTACCATCAACAAGAAATGC 59.818 40.000 0.00 0.00 0.00 3.56
1839 2218 8.133754 TCAACAAGAAATGCTCAAGATTTTTG 57.866 30.769 0.00 0.00 0.00 2.44
1964 2593 1.949525 GCTTGTGAACTCACCACACAT 59.050 47.619 7.37 0.00 45.88 3.21
2025 2663 5.460646 AGTCCATGCTTTCAATTTGTTACG 58.539 37.500 0.00 0.00 0.00 3.18
2062 2700 3.760151 TCTTCCATTTGTTCATGCAGGAG 59.240 43.478 0.00 0.00 0.00 3.69
2096 2734 2.025887 AGATGTGGTTGGTCAGATTCCC 60.026 50.000 0.00 0.00 0.00 3.97
2107 2745 2.125106 GATTCCCGCGGAACTGCT 60.125 61.111 30.73 4.31 45.07 4.24
2112 2750 0.035820 TCCCGCGGAACTGCTAAATT 60.036 50.000 30.73 0.00 0.00 1.82
2127 2765 8.324163 ACTGCTAAATTTAACTTACCTGACAG 57.676 34.615 0.00 0.00 0.00 3.51
2128 2766 7.937394 ACTGCTAAATTTAACTTACCTGACAGT 59.063 33.333 0.93 0.00 0.00 3.55
2129 2767 9.431887 CTGCTAAATTTAACTTACCTGACAGTA 57.568 33.333 0.93 0.00 0.00 2.74
2194 2832 6.430000 GGATGTCCACTTAAAGTGTTACACAT 59.570 38.462 18.19 2.31 44.50 3.21
2200 2838 6.136071 CACTTAAAGTGTTACACATGCTCAC 58.864 40.000 18.19 0.00 41.19 3.51
2574 3551 3.268023 AGCATGGTAGTTCTAGTTGCC 57.732 47.619 0.00 0.00 0.00 4.52
2684 3698 3.687572 ACATTGATTCTGATGCGCTTC 57.312 42.857 15.88 15.88 0.00 3.86
2703 3717 1.134220 TCGCCGCTTTCAGGGATTTAT 60.134 47.619 0.00 0.00 0.00 1.40
2705 3719 1.609072 GCCGCTTTCAGGGATTTATCC 59.391 52.381 0.00 0.00 46.41 2.59
3405 6787 8.204160 CCTTTTCCAAACTTAAGAACCTGAAAT 58.796 33.333 10.09 0.00 0.00 2.17
3422 6804 5.356470 CCTGAAATCCCTGTGAATTCTCTTC 59.644 44.000 7.05 3.05 34.53 2.87
3713 7120 8.514594 ACCATTGTACTTCTTTTGTATCACATG 58.485 33.333 0.00 0.00 0.00 3.21
3716 7123 9.897744 ATTGTACTTCTTTTGTATCACATGTTG 57.102 29.630 0.00 0.00 0.00 3.33
4080 7488 3.253230 AGTTTGCACTTCACAACTTTGC 58.747 40.909 0.00 0.00 0.00 3.68
4128 7544 7.415086 ACCTCTTTATTCTCTTCCTACAGAGA 58.585 38.462 0.00 0.00 46.35 3.10
4486 7963 4.077982 TGGGAGTAATAACCTCTCTGGGAT 60.078 45.833 0.00 0.00 41.11 3.85
4575 8061 4.994852 TCCTTTTCCTGTTTCATACTGACG 59.005 41.667 0.00 0.00 0.00 4.35
4576 8062 4.994852 CCTTTTCCTGTTTCATACTGACGA 59.005 41.667 0.00 0.00 0.00 4.20
4577 8063 5.107065 CCTTTTCCTGTTTCATACTGACGAC 60.107 44.000 0.00 0.00 0.00 4.34
4897 8545 4.365899 AACTCGAACAACAGGTTTTTCC 57.634 40.909 5.70 0.00 40.63 3.13
4938 8606 6.575244 TTCCCTTCATATGTATGAACCACT 57.425 37.500 10.56 0.00 45.03 4.00
4939 8607 6.575244 TCCCTTCATATGTATGAACCACTT 57.425 37.500 10.56 0.00 45.03 3.16
4940 8608 7.684317 TCCCTTCATATGTATGAACCACTTA 57.316 36.000 10.56 0.00 45.03 2.24
4941 8609 8.275187 TCCCTTCATATGTATGAACCACTTAT 57.725 34.615 10.56 0.00 45.03 1.73
4942 8610 9.387397 TCCCTTCATATGTATGAACCACTTATA 57.613 33.333 10.56 0.00 45.03 0.98
5050 8721 0.907486 TCTCCATCTTGTGAGCCCTG 59.093 55.000 0.00 0.00 0.00 4.45
5098 8771 3.282021 TCTGGGCATCACTAAAATCTGC 58.718 45.455 0.00 0.00 0.00 4.26
5246 8919 7.222031 GCATCATACTATGTTACGAACTCAACA 59.778 37.037 0.00 0.00 38.89 3.33
5570 9244 9.672086 ATTTTGCATTGATTCTCATTTGTTTTG 57.328 25.926 0.00 0.00 0.00 2.44
5613 9287 6.830838 AGAATATCCCATTTTTCTCTGTGGAC 59.169 38.462 0.00 0.00 33.53 4.02
5629 9308 8.103305 TCTCTGTGGACTTTAATATCTTTTGCT 58.897 33.333 0.00 0.00 0.00 3.91
5918 11022 6.628185 ACAGTCCACTTTCTATTACCTTACG 58.372 40.000 0.00 0.00 0.00 3.18
5931 11035 5.762825 TTACCTTACGCCTACTGTAGATG 57.237 43.478 16.22 9.99 0.00 2.90
6218 11393 5.408604 AGTTACGGTGAAATAAAGTCTGCTG 59.591 40.000 0.00 0.00 0.00 4.41
6313 11489 5.804639 TCCAACAAGATTAAGCAGCTCTAA 58.195 37.500 0.00 0.00 0.00 2.10
6418 12142 6.744112 TCGATCAAGCAATTTTTGGTAACTT 58.256 32.000 0.00 0.00 41.14 2.66
6428 12152 8.992073 GCAATTTTTGGTAACTTTCATTCTCAT 58.008 29.630 0.00 0.00 37.61 2.90
6432 12156 9.528018 TTTTTGGTAACTTTCATTCTCATTGTC 57.472 29.630 0.00 0.00 37.61 3.18
6433 12157 7.815840 TTGGTAACTTTCATTCTCATTGTCA 57.184 32.000 0.00 0.00 37.61 3.58
6736 12460 0.172578 CGCATCTCAACACCGGAGTA 59.827 55.000 9.46 0.00 34.04 2.59
6815 12574 8.809159 GATTCATAACAGAGAATCGATCAGAA 57.191 34.615 0.00 0.00 40.27 3.02
6833 12592 0.601311 AAGCTCACGGTGTTCTCTGC 60.601 55.000 8.17 4.82 0.00 4.26
6903 12662 0.868177 AAAAGGCCGACGTTTTTGCG 60.868 50.000 0.00 0.00 40.06 4.85
6999 12806 8.220755 TGTGTAAGCTTTCACATATTTATCCC 57.779 34.615 28.58 5.18 39.23 3.85
7053 12866 8.752005 TTGCTCAGCATACTAAGGAAATTAAT 57.248 30.769 0.00 0.00 38.76 1.40
7062 12875 9.838339 CATACTAAGGAAATTAATCTCACCACT 57.162 33.333 0.00 0.00 0.00 4.00
7067 14104 7.741554 AGGAAATTAATCTCACCACTACTCT 57.258 36.000 0.00 0.00 0.00 3.24
7136 14175 6.878923 TGGACAGTAAACTCATTGAATTCGAT 59.121 34.615 2.01 2.01 0.00 3.59
7148 14187 2.158900 TGAATTCGATGAGGAAGAGGCC 60.159 50.000 0.00 0.00 0.00 5.19
7234 14273 0.036952 AAGGTCGTGTCCATGCTCAG 60.037 55.000 0.00 0.00 0.00 3.35
7244 14283 1.918262 TCCATGCTCAGGGAAGACATT 59.082 47.619 0.19 0.00 38.47 2.71
7265 14308 1.040893 AGGTGACTGACGTGGACACA 61.041 55.000 17.08 0.00 41.13 3.72
7271 14314 1.134220 ACTGACGTGGACACAACCATT 60.134 47.619 0.00 0.00 42.17 3.16
7358 14401 3.071206 TCGGCTCAGCAGTCCTCC 61.071 66.667 0.00 0.00 0.00 4.30
7421 14467 0.909610 GGATCCACAGGGACACCTCA 60.910 60.000 6.95 0.00 46.95 3.86
7431 14477 3.537206 GACACCTCACCGCTGGCTT 62.537 63.158 0.00 0.00 0.00 4.35
7442 14488 2.427410 CTGGCTTTGTCGCGTTGC 60.427 61.111 5.77 4.53 0.00 4.17
7489 14535 3.968649 CATGAATGCCCGGAGTAAATTG 58.031 45.455 0.73 0.00 0.00 2.32
7490 14536 1.748493 TGAATGCCCGGAGTAAATTGC 59.252 47.619 0.73 0.00 0.00 3.56
7491 14537 1.748493 GAATGCCCGGAGTAAATTGCA 59.252 47.619 0.73 0.40 0.00 4.08
7492 14538 1.392589 ATGCCCGGAGTAAATTGCAG 58.607 50.000 0.73 0.00 31.53 4.41
7493 14539 0.326595 TGCCCGGAGTAAATTGCAGA 59.673 50.000 0.73 0.00 0.00 4.26
7494 14540 1.271652 TGCCCGGAGTAAATTGCAGAA 60.272 47.619 0.73 0.00 0.00 3.02
7495 14541 1.816224 GCCCGGAGTAAATTGCAGAAA 59.184 47.619 0.73 0.00 0.00 2.52
7496 14542 2.230266 GCCCGGAGTAAATTGCAGAAAA 59.770 45.455 0.73 0.00 0.00 2.29
7497 14543 3.833442 CCCGGAGTAAATTGCAGAAAAC 58.167 45.455 0.73 0.00 0.00 2.43
7498 14544 3.366985 CCCGGAGTAAATTGCAGAAAACC 60.367 47.826 0.73 0.00 0.00 3.27
7499 14545 3.254657 CCGGAGTAAATTGCAGAAAACCA 59.745 43.478 0.00 0.00 0.00 3.67
7500 14546 4.226761 CGGAGTAAATTGCAGAAAACCAC 58.773 43.478 0.00 0.00 0.00 4.16
7501 14547 4.556233 GGAGTAAATTGCAGAAAACCACC 58.444 43.478 0.00 0.00 0.00 4.61
7502 14548 4.038642 GGAGTAAATTGCAGAAAACCACCA 59.961 41.667 0.00 0.00 0.00 4.17
7503 14549 5.279456 GGAGTAAATTGCAGAAAACCACCAT 60.279 40.000 0.00 0.00 0.00 3.55
7504 14550 6.071616 GGAGTAAATTGCAGAAAACCACCATA 60.072 38.462 0.00 0.00 0.00 2.74
7505 14551 7.296628 AGTAAATTGCAGAAAACCACCATAA 57.703 32.000 0.00 0.00 0.00 1.90
7506 14552 7.906327 AGTAAATTGCAGAAAACCACCATAAT 58.094 30.769 0.00 0.00 0.00 1.28
7507 14553 8.374743 AGTAAATTGCAGAAAACCACCATAATT 58.625 29.630 0.00 0.00 0.00 1.40
7508 14554 7.437793 AAATTGCAGAAAACCACCATAATTG 57.562 32.000 0.00 0.00 0.00 2.32
7509 14555 5.798125 TTGCAGAAAACCACCATAATTGA 57.202 34.783 0.00 0.00 0.00 2.57
7510 14556 5.389859 TGCAGAAAACCACCATAATTGAG 57.610 39.130 0.00 0.00 0.00 3.02
7511 14557 4.220382 TGCAGAAAACCACCATAATTGAGG 59.780 41.667 0.00 0.00 0.00 3.86
7512 14558 4.462483 GCAGAAAACCACCATAATTGAGGA 59.538 41.667 5.14 0.00 0.00 3.71
7513 14559 5.622233 GCAGAAAACCACCATAATTGAGGAC 60.622 44.000 5.14 0.00 0.00 3.85
7514 14560 5.016831 AGAAAACCACCATAATTGAGGACC 58.983 41.667 5.14 0.00 0.00 4.46
7515 14561 3.382083 AACCACCATAATTGAGGACCC 57.618 47.619 5.14 0.00 0.00 4.46
7516 14562 2.573463 ACCACCATAATTGAGGACCCT 58.427 47.619 5.14 0.00 0.00 4.34
7517 14563 3.743132 ACCACCATAATTGAGGACCCTA 58.257 45.455 5.14 0.00 0.00 3.53
7518 14564 4.116113 ACCACCATAATTGAGGACCCTAA 58.884 43.478 5.14 0.00 0.00 2.69
7519 14565 4.731929 ACCACCATAATTGAGGACCCTAAT 59.268 41.667 5.14 0.00 0.00 1.73
7520 14566 5.195756 ACCACCATAATTGAGGACCCTAATT 59.804 40.000 5.14 8.21 0.00 1.40
7521 14567 5.770162 CCACCATAATTGAGGACCCTAATTC 59.230 44.000 6.78 0.00 0.00 2.17
7522 14568 6.364701 CACCATAATTGAGGACCCTAATTCA 58.635 40.000 6.78 0.00 0.00 2.57
7523 14569 6.263168 CACCATAATTGAGGACCCTAATTCAC 59.737 42.308 6.78 0.00 0.00 3.18
7524 14570 6.069088 ACCATAATTGAGGACCCTAATTCACA 60.069 38.462 6.78 0.00 0.00 3.58
7525 14571 6.833416 CCATAATTGAGGACCCTAATTCACAA 59.167 38.462 6.78 0.00 0.00 3.33
7526 14572 7.341769 CCATAATTGAGGACCCTAATTCACAAA 59.658 37.037 6.78 0.00 0.00 2.83
7527 14573 8.748412 CATAATTGAGGACCCTAATTCACAAAA 58.252 33.333 6.78 0.00 0.00 2.44
7528 14574 6.590234 ATTGAGGACCCTAATTCACAAAAC 57.410 37.500 0.00 0.00 0.00 2.43
7529 14575 4.403734 TGAGGACCCTAATTCACAAAACC 58.596 43.478 0.00 0.00 0.00 3.27
7530 14576 4.141135 TGAGGACCCTAATTCACAAAACCA 60.141 41.667 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 99 1.153249 AACGTATGGTGATGCGGGG 60.153 57.895 0.00 0.00 41.54 5.73
107 110 3.639538 CGACCTAATCCTGGAACGTATG 58.360 50.000 0.00 0.00 0.00 2.39
112 115 0.539986 TGGCGACCTAATCCTGGAAC 59.460 55.000 0.00 0.00 0.00 3.62
117 120 2.683768 AGATCTTGGCGACCTAATCCT 58.316 47.619 0.00 0.00 0.00 3.24
148 151 7.062722 CAGTCGTATACATATTCAGCTCCATTG 59.937 40.741 3.32 0.00 0.00 2.82
150 153 6.434340 TCAGTCGTATACATATTCAGCTCCAT 59.566 38.462 3.32 0.00 0.00 3.41
163 166 3.361281 AGGACCAGTCAGTCGTATACA 57.639 47.619 3.32 0.00 37.66 2.29
168 171 1.887198 CTACAAGGACCAGTCAGTCGT 59.113 52.381 0.00 0.00 37.66 4.34
172 175 2.165437 GAGCTCTACAAGGACCAGTCAG 59.835 54.545 6.43 0.00 0.00 3.51
460 475 4.137543 AGAAACCTCCATGACAGAACAAC 58.862 43.478 0.00 0.00 0.00 3.32
496 511 0.249996 ACTGTACAACGGGGGAAACG 60.250 55.000 0.00 0.00 37.36 3.60
500 515 1.259609 CTGTACTGTACAACGGGGGA 58.740 55.000 20.09 0.00 38.38 4.81
550 565 5.036117 TGGTAGGTGAGCATAAGAATTCC 57.964 43.478 0.65 0.00 0.00 3.01
566 581 4.445385 GGTTACACGCGTATAATTGGTAGG 59.555 45.833 13.76 0.00 0.00 3.18
573 594 2.853594 CACACGGTTACACGCGTATAAT 59.146 45.455 13.76 1.43 37.37 1.28
604 627 2.488952 TGCGCTTGTCAATTCTGTGTA 58.511 42.857 9.73 0.00 0.00 2.90
605 628 1.308047 TGCGCTTGTCAATTCTGTGT 58.692 45.000 9.73 0.00 0.00 3.72
606 629 2.313234 CTTGCGCTTGTCAATTCTGTG 58.687 47.619 9.73 0.00 0.00 3.66
636 666 0.853530 AAATATCCAGGGTCCAGGCC 59.146 55.000 0.00 0.00 0.00 5.19
638 668 2.851195 CGAAAATATCCAGGGTCCAGG 58.149 52.381 0.00 0.00 0.00 4.45
639 669 2.222027 GCGAAAATATCCAGGGTCCAG 58.778 52.381 0.00 0.00 0.00 3.86
643 673 0.544697 ACCGCGAAAATATCCAGGGT 59.455 50.000 8.23 0.00 0.00 4.34
684 714 1.332686 CATGGCATCAGTTGGTCATCG 59.667 52.381 0.00 0.00 0.00 3.84
723 753 0.471971 GCCCCTATACTGCTCTGGGA 60.472 60.000 0.00 0.00 40.23 4.37
740 773 1.305930 ATCGCCGAAAAGAACTGGCC 61.306 55.000 0.00 0.00 44.71 5.36
741 774 0.521735 AATCGCCGAAAAGAACTGGC 59.478 50.000 0.00 0.00 44.09 4.85
742 775 2.076863 AGAATCGCCGAAAAGAACTGG 58.923 47.619 0.00 0.00 0.00 4.00
743 776 2.094417 GGAGAATCGCCGAAAAGAACTG 59.906 50.000 0.00 0.00 34.37 3.16
744 777 2.028020 AGGAGAATCGCCGAAAAGAACT 60.028 45.455 0.00 0.00 34.37 3.01
745 778 2.347731 AGGAGAATCGCCGAAAAGAAC 58.652 47.619 0.00 0.00 34.37 3.01
746 779 2.762535 AGGAGAATCGCCGAAAAGAA 57.237 45.000 0.00 0.00 34.37 2.52
747 780 3.021695 TCTAGGAGAATCGCCGAAAAGA 58.978 45.455 0.00 0.00 34.37 2.52
748 781 3.438297 TCTAGGAGAATCGCCGAAAAG 57.562 47.619 0.00 0.00 34.37 2.27
749 782 3.880047 TTCTAGGAGAATCGCCGAAAA 57.120 42.857 0.00 0.00 34.37 2.29
758 791 2.158234 AGAGGGGCGATTCTAGGAGAAT 60.158 50.000 1.34 1.34 46.84 2.40
759 792 1.218196 AGAGGGGCGATTCTAGGAGAA 59.782 52.381 0.00 0.00 38.78 2.87
760 793 0.854218 AGAGGGGCGATTCTAGGAGA 59.146 55.000 0.00 0.00 0.00 3.71
761 794 1.253100 GAGAGGGGCGATTCTAGGAG 58.747 60.000 0.00 0.00 0.00 3.69
762 795 0.178958 GGAGAGGGGCGATTCTAGGA 60.179 60.000 0.00 0.00 0.00 2.94
763 796 1.188871 GGGAGAGGGGCGATTCTAGG 61.189 65.000 0.00 0.00 0.00 3.02
764 797 1.188871 GGGGAGAGGGGCGATTCTAG 61.189 65.000 0.00 0.00 0.00 2.43
765 798 1.152312 GGGGAGAGGGGCGATTCTA 60.152 63.158 0.00 0.00 0.00 2.10
766 799 2.446802 GGGGAGAGGGGCGATTCT 60.447 66.667 0.00 0.00 0.00 2.40
767 800 2.375345 TTGGGGAGAGGGGCGATTC 61.375 63.158 0.00 0.00 0.00 2.52
768 801 2.286121 TTGGGGAGAGGGGCGATT 60.286 61.111 0.00 0.00 0.00 3.34
769 802 3.090532 GTTGGGGAGAGGGGCGAT 61.091 66.667 0.00 0.00 0.00 4.58
770 803 3.864983 AAGTTGGGGAGAGGGGCGA 62.865 63.158 0.00 0.00 0.00 5.54
771 804 3.330720 AAGTTGGGGAGAGGGGCG 61.331 66.667 0.00 0.00 0.00 6.13
772 805 0.620700 TAGAAGTTGGGGAGAGGGGC 60.621 60.000 0.00 0.00 0.00 5.80
773 806 1.205055 GTAGAAGTTGGGGAGAGGGG 58.795 60.000 0.00 0.00 0.00 4.79
774 807 1.205055 GGTAGAAGTTGGGGAGAGGG 58.795 60.000 0.00 0.00 0.00 4.30
775 808 1.952621 TGGTAGAAGTTGGGGAGAGG 58.047 55.000 0.00 0.00 0.00 3.69
776 809 4.367039 TTTTGGTAGAAGTTGGGGAGAG 57.633 45.455 0.00 0.00 0.00 3.20
777 810 4.564821 CGATTTTGGTAGAAGTTGGGGAGA 60.565 45.833 0.00 0.00 0.00 3.71
778 811 3.689649 CGATTTTGGTAGAAGTTGGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
779 812 3.681593 CGATTTTGGTAGAAGTTGGGGA 58.318 45.455 0.00 0.00 0.00 4.81
780 813 2.163613 GCGATTTTGGTAGAAGTTGGGG 59.836 50.000 0.00 0.00 0.00 4.96
781 814 2.163613 GGCGATTTTGGTAGAAGTTGGG 59.836 50.000 0.00 0.00 0.00 4.12
782 815 2.817258 TGGCGATTTTGGTAGAAGTTGG 59.183 45.455 0.00 0.00 0.00 3.77
783 816 3.502211 AGTGGCGATTTTGGTAGAAGTTG 59.498 43.478 0.00 0.00 0.00 3.16
784 817 3.751518 AGTGGCGATTTTGGTAGAAGTT 58.248 40.909 0.00 0.00 0.00 2.66
785 818 3.335579 GAGTGGCGATTTTGGTAGAAGT 58.664 45.455 0.00 0.00 0.00 3.01
786 819 2.678336 GGAGTGGCGATTTTGGTAGAAG 59.322 50.000 0.00 0.00 0.00 2.85
787 820 2.039216 TGGAGTGGCGATTTTGGTAGAA 59.961 45.455 0.00 0.00 0.00 2.10
788 821 1.626321 TGGAGTGGCGATTTTGGTAGA 59.374 47.619 0.00 0.00 0.00 2.59
789 822 2.107950 TGGAGTGGCGATTTTGGTAG 57.892 50.000 0.00 0.00 0.00 3.18
790 823 2.799126 ATGGAGTGGCGATTTTGGTA 57.201 45.000 0.00 0.00 0.00 3.25
791 824 2.799126 TATGGAGTGGCGATTTTGGT 57.201 45.000 0.00 0.00 0.00 3.67
792 825 5.964958 AATATATGGAGTGGCGATTTTGG 57.035 39.130 0.00 0.00 0.00 3.28
859 892 6.324819 CAGAATCGCCACTTCATATGTTTTT 58.675 36.000 1.90 0.00 0.00 1.94
860 893 5.163622 CCAGAATCGCCACTTCATATGTTTT 60.164 40.000 1.90 0.00 0.00 2.43
861 894 4.336433 CCAGAATCGCCACTTCATATGTTT 59.664 41.667 1.90 0.00 0.00 2.83
862 895 3.879295 CCAGAATCGCCACTTCATATGTT 59.121 43.478 1.90 0.00 0.00 2.71
863 896 3.134623 TCCAGAATCGCCACTTCATATGT 59.865 43.478 1.90 0.00 0.00 2.29
864 897 3.732212 TCCAGAATCGCCACTTCATATG 58.268 45.455 0.00 0.00 0.00 1.78
865 898 4.422073 TTCCAGAATCGCCACTTCATAT 57.578 40.909 0.00 0.00 0.00 1.78
866 899 3.904800 TTCCAGAATCGCCACTTCATA 57.095 42.857 0.00 0.00 0.00 2.15
867 900 2.787473 TTCCAGAATCGCCACTTCAT 57.213 45.000 0.00 0.00 0.00 2.57
868 901 2.559698 TTTCCAGAATCGCCACTTCA 57.440 45.000 0.00 0.00 0.00 3.02
869 902 3.826466 CTTTTTCCAGAATCGCCACTTC 58.174 45.455 0.00 0.00 0.00 3.01
870 903 2.029918 GCTTTTTCCAGAATCGCCACTT 60.030 45.455 0.00 0.00 0.00 3.16
871 904 1.541588 GCTTTTTCCAGAATCGCCACT 59.458 47.619 0.00 0.00 0.00 4.00
872 905 1.541588 AGCTTTTTCCAGAATCGCCAC 59.458 47.619 0.00 0.00 0.00 5.01
873 906 1.541147 CAGCTTTTTCCAGAATCGCCA 59.459 47.619 0.00 0.00 0.00 5.69
874 907 1.135286 CCAGCTTTTTCCAGAATCGCC 60.135 52.381 0.00 0.00 0.00 5.54
875 908 1.135286 CCCAGCTTTTTCCAGAATCGC 60.135 52.381 0.00 0.00 0.00 4.58
876 909 1.474077 CCCCAGCTTTTTCCAGAATCG 59.526 52.381 0.00 0.00 0.00 3.34
877 910 2.757314 CTCCCCAGCTTTTTCCAGAATC 59.243 50.000 0.00 0.00 0.00 2.52
878 911 2.558350 CCTCCCCAGCTTTTTCCAGAAT 60.558 50.000 0.00 0.00 0.00 2.40
879 912 1.203050 CCTCCCCAGCTTTTTCCAGAA 60.203 52.381 0.00 0.00 0.00 3.02
880 913 0.405585 CCTCCCCAGCTTTTTCCAGA 59.594 55.000 0.00 0.00 0.00 3.86
881 914 0.613012 CCCTCCCCAGCTTTTTCCAG 60.613 60.000 0.00 0.00 0.00 3.86
882 915 1.464722 CCCTCCCCAGCTTTTTCCA 59.535 57.895 0.00 0.00 0.00 3.53
883 916 1.305297 CCCCTCCCCAGCTTTTTCC 60.305 63.158 0.00 0.00 0.00 3.13
884 917 1.305297 CCCCCTCCCCAGCTTTTTC 60.305 63.158 0.00 0.00 0.00 2.29
885 918 2.861730 CCCCCTCCCCAGCTTTTT 59.138 61.111 0.00 0.00 0.00 1.94
899 932 0.765510 ATTCTACCAGAATCGCCCCC 59.234 55.000 0.00 0.00 40.75 5.40
906 939 3.644966 TTTGGGCGATTCTACCAGAAT 57.355 42.857 1.09 1.09 46.84 2.40
907 940 3.008594 TCTTTTGGGCGATTCTACCAGAA 59.991 43.478 0.00 0.00 38.78 3.02
908 941 2.569853 TCTTTTGGGCGATTCTACCAGA 59.430 45.455 0.00 0.00 35.37 3.86
909 942 2.985896 TCTTTTGGGCGATTCTACCAG 58.014 47.619 0.00 0.00 35.37 4.00
910 943 3.078837 GTTCTTTTGGGCGATTCTACCA 58.921 45.455 0.00 0.00 0.00 3.25
911 944 3.127030 CAGTTCTTTTGGGCGATTCTACC 59.873 47.826 0.00 0.00 0.00 3.18
912 945 3.127030 CCAGTTCTTTTGGGCGATTCTAC 59.873 47.826 0.00 0.00 31.87 2.59
913 946 3.343617 CCAGTTCTTTTGGGCGATTCTA 58.656 45.455 0.00 0.00 31.87 2.10
914 947 2.162681 CCAGTTCTTTTGGGCGATTCT 58.837 47.619 0.00 0.00 31.87 2.40
915 948 1.402852 GCCAGTTCTTTTGGGCGATTC 60.403 52.381 0.00 0.00 36.58 2.52
916 949 0.603065 GCCAGTTCTTTTGGGCGATT 59.397 50.000 0.00 0.00 36.58 3.34
917 950 2.267045 GCCAGTTCTTTTGGGCGAT 58.733 52.632 0.00 0.00 36.58 4.58
918 951 3.758172 GCCAGTTCTTTTGGGCGA 58.242 55.556 0.00 0.00 36.58 5.54
921 954 1.075536 ACTAGGGCCAGTTCTTTTGGG 59.924 52.381 6.18 0.00 36.19 4.12
922 955 2.586648 ACTAGGGCCAGTTCTTTTGG 57.413 50.000 6.18 0.00 38.78 3.28
923 956 3.756963 GGTAACTAGGGCCAGTTCTTTTG 59.243 47.826 19.93 0.00 39.45 2.44
924 957 3.396611 TGGTAACTAGGGCCAGTTCTTTT 59.603 43.478 19.93 4.28 39.45 2.27
925 958 2.983898 TGGTAACTAGGGCCAGTTCTTT 59.016 45.455 19.93 4.58 39.45 2.52
926 959 2.627933 TGGTAACTAGGGCCAGTTCTT 58.372 47.619 19.93 4.87 39.45 2.52
927 960 2.337359 TGGTAACTAGGGCCAGTTCT 57.663 50.000 19.93 0.00 39.45 3.01
928 961 3.054655 TGAATGGTAACTAGGGCCAGTTC 60.055 47.826 19.93 13.40 39.45 3.01
929 962 2.916934 TGAATGGTAACTAGGGCCAGTT 59.083 45.455 20.12 20.12 41.56 3.16
930 963 2.238898 GTGAATGGTAACTAGGGCCAGT 59.761 50.000 6.18 4.36 35.56 4.00
931 964 2.421529 GGTGAATGGTAACTAGGGCCAG 60.422 54.545 6.18 3.63 35.56 4.85
932 965 1.562475 GGTGAATGGTAACTAGGGCCA 59.438 52.381 6.18 4.96 36.64 5.36
933 966 1.562475 TGGTGAATGGTAACTAGGGCC 59.438 52.381 0.00 0.00 37.61 5.80
934 967 3.577805 ATGGTGAATGGTAACTAGGGC 57.422 47.619 0.00 0.00 37.61 5.19
935 968 7.518188 AGATTAATGGTGAATGGTAACTAGGG 58.482 38.462 0.00 0.00 37.61 3.53
936 969 8.210946 TGAGATTAATGGTGAATGGTAACTAGG 58.789 37.037 0.00 0.00 37.61 3.02
937 970 9.265901 CTGAGATTAATGGTGAATGGTAACTAG 57.734 37.037 0.00 0.00 37.61 2.57
938 971 8.768397 ACTGAGATTAATGGTGAATGGTAACTA 58.232 33.333 0.00 0.00 37.61 2.24
939 972 7.633789 ACTGAGATTAATGGTGAATGGTAACT 58.366 34.615 0.00 0.00 37.61 2.24
940 973 7.552687 TGACTGAGATTAATGGTGAATGGTAAC 59.447 37.037 0.00 0.00 0.00 2.50
941 974 7.629157 TGACTGAGATTAATGGTGAATGGTAA 58.371 34.615 0.00 0.00 0.00 2.85
978 1011 3.373565 CTTGCTTGGCGTTCCCCC 61.374 66.667 0.00 0.00 0.00 5.40
987 1093 0.449388 GCCTCATCGTTCTTGCTTGG 59.551 55.000 0.00 0.00 0.00 3.61
988 1094 0.095935 CGCCTCATCGTTCTTGCTTG 59.904 55.000 0.00 0.00 0.00 4.01
1106 1218 2.022129 CACGCACCTTCAGACGGAC 61.022 63.158 0.00 0.00 0.00 4.79
1325 1641 0.808755 GAATCCATGGCGGTTTCGTT 59.191 50.000 6.96 0.00 34.53 3.85
1330 1646 0.327924 TGTCTGAATCCATGGCGGTT 59.672 50.000 6.96 1.33 35.57 4.44
1339 1658 5.573146 GGATTGAATTCGTTGTCTGAATCC 58.427 41.667 11.82 11.82 35.07 3.01
1372 1692 0.038251 TGTTGTAGGAGCAGACGCAG 60.038 55.000 0.00 0.00 42.27 5.18
1442 1762 3.019564 ACCAATGGCACTAATCTTGCTC 58.980 45.455 0.00 0.00 40.07 4.26
1448 1768 1.750778 CACCCACCAATGGCACTAATC 59.249 52.381 0.00 0.00 45.76 1.75
1486 1806 3.365265 CTGCAAGGACCAACCCGC 61.365 66.667 0.00 0.00 40.05 6.13
1522 1842 3.729217 GCTAACTTTCAAGTTTGAACGGC 59.271 43.478 15.35 5.86 46.52 5.68
1524 1844 4.201970 TGGGCTAACTTTCAAGTTTGAACG 60.202 41.667 15.35 7.96 46.52 3.95
1528 1848 3.636764 ACCTGGGCTAACTTTCAAGTTTG 59.363 43.478 10.15 9.45 46.52 2.93
1565 1925 8.359642 TGCAACTTCAAGCTGAAATATAACTTT 58.640 29.630 0.00 0.00 35.73 2.66
1567 1927 7.452880 TGCAACTTCAAGCTGAAATATAACT 57.547 32.000 0.00 0.00 35.73 2.24
1674 2034 0.437295 CAAAAGTCGTCGGCTTACGG 59.563 55.000 13.32 1.66 43.05 4.02
1691 2068 0.111061 AGGAACTGCATGTCTGGCAA 59.889 50.000 0.00 0.00 41.39 4.52
1693 2070 2.113860 TAAGGAACTGCATGTCTGGC 57.886 50.000 0.00 0.00 40.86 4.85
1694 2071 5.862845 AGATATAAGGAACTGCATGTCTGG 58.137 41.667 0.00 0.00 40.86 3.86
1725 2104 8.141268 GGTTGTTTCAGAATATTTTGGTCTTGA 58.859 33.333 6.17 0.00 0.00 3.02
1737 2116 6.889177 TGCCATTCATAGGTTGTTTCAGAATA 59.111 34.615 0.00 0.00 0.00 1.75
1748 2127 7.090319 TCCATATAAGTGCCATTCATAGGTT 57.910 36.000 0.00 0.00 0.00 3.50
1755 2134 4.026356 AGCCTCCATATAAGTGCCATTC 57.974 45.455 0.00 0.00 0.00 2.67
1839 2218 5.107065 GCGGTTGTCTTATATGGATTGCTAC 60.107 44.000 0.00 0.00 0.00 3.58
1964 2593 8.484641 TGCAATTATTCACAACAAACAAGAAA 57.515 26.923 0.00 0.00 0.00 2.52
2096 2734 4.336532 AGTTAAATTTAGCAGTTCCGCG 57.663 40.909 13.65 0.00 36.85 6.46
2112 2750 8.640063 TCATACAGTACTGTCAGGTAAGTTAA 57.360 34.615 31.11 10.31 43.74 2.01
2127 2765 7.985184 TCATGGTGGAAATAGTTCATACAGTAC 59.015 37.037 5.15 0.00 35.25 2.73
2128 2766 8.084985 TCATGGTGGAAATAGTTCATACAGTA 57.915 34.615 5.15 0.00 35.25 2.74
2129 2767 6.957631 TCATGGTGGAAATAGTTCATACAGT 58.042 36.000 5.15 0.00 35.25 3.55
2194 2832 2.227149 CTGCAGCTTGTAATTGTGAGCA 59.773 45.455 0.00 0.00 37.59 4.26
2200 2838 2.094545 GGGGAACTGCAGCTTGTAATTG 60.095 50.000 15.27 0.00 0.00 2.32
2360 3247 5.168569 TGAAAGAGGCATAACTAGTCAACG 58.831 41.667 0.00 0.00 0.00 4.10
2574 3551 5.667466 TCGTATAGGCCTTGGAAAGTAAAG 58.333 41.667 12.58 0.00 44.25 1.85
2684 3698 1.264288 GATAAATCCCTGAAAGCGGCG 59.736 52.381 0.51 0.51 0.00 6.46
2703 3717 5.032846 AGATCCTGTCAAGTAATTCTGGGA 58.967 41.667 0.00 0.00 0.00 4.37
2705 3719 6.404074 GCAAAGATCCTGTCAAGTAATTCTGG 60.404 42.308 0.00 0.00 0.00 3.86
2866 3900 7.761409 TCCAGTTAATGCATTGATACTCAAAC 58.239 34.615 22.27 14.51 40.12 2.93
3007 4041 6.469782 AAAGTGAACCAACAGATTGACAAT 57.530 33.333 0.00 0.00 38.15 2.71
3405 6787 5.960811 AGTATGAGAAGAGAATTCACAGGGA 59.039 40.000 8.44 0.00 0.00 4.20
3713 7120 0.387565 TTTTGAAAGCGGGCTCCAAC 59.612 50.000 7.62 0.00 0.00 3.77
3716 7123 2.068519 CAAATTTTGAAAGCGGGCTCC 58.931 47.619 2.88 0.00 0.00 4.70
3951 7358 5.174037 TCTCCCGTTAAATCACCAATTCT 57.826 39.130 0.00 0.00 0.00 2.40
4080 7488 2.837498 TCCCACATATGCGAAGACATG 58.163 47.619 1.58 0.00 0.00 3.21
4128 7544 6.267471 GTCAGATATCCTGGAGTTTCTCAGAT 59.733 42.308 1.52 1.65 43.12 2.90
4486 7963 5.291100 AGGGCTAATCATATCTGGTAGGA 57.709 43.478 0.00 0.00 0.00 2.94
4575 8061 2.826428 ACATCGGACATACATGCTGTC 58.174 47.619 16.81 16.81 41.83 3.51
4576 8062 2.988010 ACATCGGACATACATGCTGT 57.012 45.000 1.37 1.37 0.00 4.40
4577 8063 4.621068 AAAACATCGGACATACATGCTG 57.379 40.909 0.00 0.00 0.00 4.41
4592 8078 7.123355 TGACCAAAAGGATGAAGAAAAACAT 57.877 32.000 0.00 0.00 0.00 2.71
4594 8080 6.816140 TGTTGACCAAAAGGATGAAGAAAAAC 59.184 34.615 0.00 0.00 0.00 2.43
4595 8081 6.940739 TGTTGACCAAAAGGATGAAGAAAAA 58.059 32.000 0.00 0.00 0.00 1.94
4897 8545 7.396055 TGAAGGGAAACTAAATGAAGTAATGGG 59.604 37.037 0.00 0.00 0.00 4.00
4938 8606 8.978874 ATAGTTTGCTCACATGGTGAATATAA 57.021 30.769 0.00 0.00 42.26 0.98
4939 8607 8.432013 AGATAGTTTGCTCACATGGTGAATATA 58.568 33.333 0.00 0.00 42.26 0.86
4940 8608 7.228108 CAGATAGTTTGCTCACATGGTGAATAT 59.772 37.037 0.00 0.00 42.26 1.28
4941 8609 6.539826 CAGATAGTTTGCTCACATGGTGAATA 59.460 38.462 0.00 0.00 42.26 1.75
4942 8610 5.356190 CAGATAGTTTGCTCACATGGTGAAT 59.644 40.000 0.00 0.00 42.26 2.57
4943 8611 4.696877 CAGATAGTTTGCTCACATGGTGAA 59.303 41.667 0.00 0.00 42.26 3.18
4944 8612 4.256110 CAGATAGTTTGCTCACATGGTGA 58.744 43.478 0.00 0.00 40.50 4.02
4945 8613 4.005650 ACAGATAGTTTGCTCACATGGTG 58.994 43.478 0.00 0.00 34.45 4.17
4946 8614 4.292186 ACAGATAGTTTGCTCACATGGT 57.708 40.909 0.00 0.00 0.00 3.55
5050 8721 7.315142 CAGATACTGCTAAGGATGAAGAGATC 58.685 42.308 0.00 0.00 0.00 2.75
5246 8919 0.037590 TGTTGCTAACGCCCCATCTT 59.962 50.000 0.00 0.00 34.43 2.40
5570 9244 7.116519 GGATATTCTAGAATCGGTTTAGTGCAC 59.883 40.741 21.17 9.40 32.50 4.57
5613 9287 8.037166 AGGGAAGCAAAGCAAAAGATATTAAAG 58.963 33.333 0.00 0.00 0.00 1.85
5629 9308 4.179361 CTGCACCAGGGAAGCAAA 57.821 55.556 10.39 0.00 37.89 3.68
5890 10994 6.838382 AGGTAATAGAAAGTGGACTGTTGTT 58.162 36.000 0.00 0.00 0.00 2.83
5931 11035 1.749258 GATCCCCTTCACCGTTGCC 60.749 63.158 0.00 0.00 0.00 4.52
6218 11393 5.179368 TGTTGCTATCACTAAAACTGTCAGC 59.821 40.000 0.00 0.00 0.00 4.26
6313 11489 8.487970 CGTATAGCAACGATCTACAATGAAATT 58.512 33.333 0.00 0.00 45.68 1.82
6418 12142 5.183713 GGTGGACAATGACAATGAGAATGAA 59.816 40.000 0.00 0.00 0.00 2.57
6428 12152 4.214310 ACATTTCAGGTGGACAATGACAA 58.786 39.130 0.00 0.00 32.79 3.18
6429 12153 3.820467 GACATTTCAGGTGGACAATGACA 59.180 43.478 0.00 0.00 32.79 3.58
6430 12154 4.074970 AGACATTTCAGGTGGACAATGAC 58.925 43.478 0.00 0.00 32.79 3.06
6431 12155 4.074259 CAGACATTTCAGGTGGACAATGA 58.926 43.478 0.00 0.00 32.79 2.57
6432 12156 3.366679 GCAGACATTTCAGGTGGACAATG 60.367 47.826 0.00 0.00 33.75 2.82
6433 12157 2.821969 GCAGACATTTCAGGTGGACAAT 59.178 45.455 0.00 0.00 0.00 2.71
6815 12574 1.005630 GCAGAGAACACCGTGAGCT 60.006 57.895 5.28 1.50 0.00 4.09
6833 12592 3.621715 GGGTGCGAGATAACCACTAAAAG 59.378 47.826 0.00 0.00 38.27 2.27
6992 12799 7.131907 TGATTTATTCTGAGGTCGGGATAAA 57.868 36.000 12.70 12.70 43.26 1.40
6999 12806 8.138074 TGAAGTAGATGATTTATTCTGAGGTCG 58.862 37.037 0.00 0.00 0.00 4.79
7053 12866 1.617263 GGCCTGAGAGTAGTGGTGAGA 60.617 57.143 0.00 0.00 0.00 3.27
7062 12875 0.031716 AGATGCCAGGCCTGAGAGTA 60.032 55.000 34.91 17.32 0.00 2.59
7067 14104 2.686572 ATGCAGATGCCAGGCCTGA 61.687 57.895 34.91 16.18 41.18 3.86
7148 14187 1.270968 GACATTGATGAGTCGCGCG 59.729 57.895 26.76 26.76 0.00 6.86
7208 14247 0.762418 TGGACACGACCTTGGACATT 59.238 50.000 0.00 0.00 0.00 2.71
7234 14273 2.303022 TCAGTCACCTCAATGTCTTCCC 59.697 50.000 0.00 0.00 0.00 3.97
7244 14283 0.753848 TGTCCACGTCAGTCACCTCA 60.754 55.000 0.00 0.00 0.00 3.86
7253 14296 2.549134 CCTAATGGTTGTGTCCACGTCA 60.549 50.000 0.00 0.00 40.51 4.35
7265 14308 0.180406 CGTAGCTGGGCCTAATGGTT 59.820 55.000 4.53 0.00 35.27 3.67
7271 14314 2.443390 GGGACGTAGCTGGGCCTA 60.443 66.667 4.53 0.00 0.00 3.93
7308 14351 1.068264 TGAGACGTAACTGCTGCTGAG 60.068 52.381 13.69 0.00 0.00 3.35
7358 14401 2.099062 GCGCTGATTTGACTGCCG 59.901 61.111 0.00 0.00 0.00 5.69
7431 14477 0.666274 CCACTAGAGCAACGCGACAA 60.666 55.000 15.93 0.00 0.00 3.18
7442 14488 0.312416 CTTCGATCCCGCCACTAGAG 59.688 60.000 0.00 0.00 35.37 2.43
7480 14526 5.195001 TGGTGGTTTTCTGCAATTTACTC 57.805 39.130 0.00 0.00 0.00 2.59
7481 14527 5.806654 ATGGTGGTTTTCTGCAATTTACT 57.193 34.783 0.00 0.00 0.00 2.24
7482 14528 8.442384 CAATTATGGTGGTTTTCTGCAATTTAC 58.558 33.333 0.00 0.00 0.00 2.01
7483 14529 8.370940 TCAATTATGGTGGTTTTCTGCAATTTA 58.629 29.630 0.00 0.00 0.00 1.40
7484 14530 7.222872 TCAATTATGGTGGTTTTCTGCAATTT 58.777 30.769 0.00 0.00 0.00 1.82
7485 14531 6.767456 TCAATTATGGTGGTTTTCTGCAATT 58.233 32.000 0.00 0.00 0.00 2.32
7486 14532 6.357579 TCAATTATGGTGGTTTTCTGCAAT 57.642 33.333 0.00 0.00 0.00 3.56
7487 14533 5.279406 CCTCAATTATGGTGGTTTTCTGCAA 60.279 40.000 0.00 0.00 0.00 4.08
7488 14534 4.220382 CCTCAATTATGGTGGTTTTCTGCA 59.780 41.667 0.00 0.00 0.00 4.41
7489 14535 4.462483 TCCTCAATTATGGTGGTTTTCTGC 59.538 41.667 0.00 0.00 0.00 4.26
7490 14536 5.105756 GGTCCTCAATTATGGTGGTTTTCTG 60.106 44.000 0.00 0.00 0.00 3.02
7491 14537 5.016831 GGTCCTCAATTATGGTGGTTTTCT 58.983 41.667 0.00 0.00 0.00 2.52
7492 14538 4.159693 GGGTCCTCAATTATGGTGGTTTTC 59.840 45.833 0.00 0.00 0.00 2.29
7493 14539 4.093743 GGGTCCTCAATTATGGTGGTTTT 58.906 43.478 0.00 0.00 0.00 2.43
7494 14540 3.336694 AGGGTCCTCAATTATGGTGGTTT 59.663 43.478 0.00 0.00 0.00 3.27
7495 14541 2.926329 AGGGTCCTCAATTATGGTGGTT 59.074 45.455 0.00 0.00 0.00 3.67
7496 14542 2.573463 AGGGTCCTCAATTATGGTGGT 58.427 47.619 0.00 0.00 0.00 4.16
7497 14543 4.788925 TTAGGGTCCTCAATTATGGTGG 57.211 45.455 0.00 0.00 0.00 4.61
7498 14544 6.263168 GTGAATTAGGGTCCTCAATTATGGTG 59.737 42.308 0.00 0.00 0.00 4.17
7499 14545 6.069088 TGTGAATTAGGGTCCTCAATTATGGT 60.069 38.462 0.00 0.00 0.00 3.55
7500 14546 6.364701 TGTGAATTAGGGTCCTCAATTATGG 58.635 40.000 0.00 0.00 0.00 2.74
7501 14547 7.880160 TTGTGAATTAGGGTCCTCAATTATG 57.120 36.000 0.00 0.00 0.00 1.90
7502 14548 8.749354 GTTTTGTGAATTAGGGTCCTCAATTAT 58.251 33.333 0.00 0.00 0.00 1.28
7503 14549 7.177744 GGTTTTGTGAATTAGGGTCCTCAATTA 59.822 37.037 0.00 0.00 0.00 1.40
7504 14550 6.014584 GGTTTTGTGAATTAGGGTCCTCAATT 60.015 38.462 0.00 2.10 0.00 2.32
7505 14551 5.480422 GGTTTTGTGAATTAGGGTCCTCAAT 59.520 40.000 0.00 0.00 0.00 2.57
7506 14552 4.830600 GGTTTTGTGAATTAGGGTCCTCAA 59.169 41.667 0.00 0.00 0.00 3.02
7507 14553 4.141135 TGGTTTTGTGAATTAGGGTCCTCA 60.141 41.667 0.00 0.00 0.00 3.86
7508 14554 4.403734 TGGTTTTGTGAATTAGGGTCCTC 58.596 43.478 0.00 0.00 0.00 3.71
7509 14555 4.463050 TGGTTTTGTGAATTAGGGTCCT 57.537 40.909 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.