Multiple sequence alignment - TraesCS3A01G422500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G422500 chr3A 100.000 2708 0 0 1 2708 663463115 663465822 0.000000e+00 5001
1 TraesCS3A01G422500 chr3A 93.080 1604 49 20 692 2268 599139766 599138198 0.000000e+00 2290
2 TraesCS3A01G422500 chr3A 97.143 700 20 0 690 1389 102574832 102575531 0.000000e+00 1182
3 TraesCS3A01G422500 chr3A 90.909 880 36 21 1831 2708 599138547 599137710 0.000000e+00 1142
4 TraesCS3A01G422500 chr2A 92.454 2054 108 28 690 2701 114720387 114718339 0.000000e+00 2891
5 TraesCS3A01G422500 chr2A 94.622 688 22 7 2021 2708 377677573 377676901 0.000000e+00 1051
6 TraesCS3A01G422500 chr1A 94.900 1608 39 11 689 2268 483972337 483970745 0.000000e+00 2475
7 TraesCS3A01G422500 chr1A 92.404 882 40 16 1831 2708 483971113 483970255 0.000000e+00 1232
8 TraesCS3A01G422500 chr1A 93.878 196 12 0 1842 2037 483971218 483971023 2.040000e-76 296
9 TraesCS3A01G422500 chr7D 92.127 1575 60 17 683 2220 500594115 500595662 0.000000e+00 2163
10 TraesCS3A01G422500 chr7D 93.735 814 26 8 1839 2652 500595248 500596036 0.000000e+00 1197
11 TraesCS3A01G422500 chr6D 91.751 1576 72 28 689 2220 463503199 463504760 0.000000e+00 2137
12 TraesCS3A01G422500 chr6D 91.837 1568 61 20 691 2220 270265027 270263489 0.000000e+00 2124
13 TraesCS3A01G422500 chr6D 94.464 867 24 8 1842 2708 270263900 270263058 0.000000e+00 1314
14 TraesCS3A01G422500 chr6B 91.543 1549 85 26 692 2220 551062212 551060690 0.000000e+00 2093
15 TraesCS3A01G422500 chr6B 92.379 866 44 16 1858 2708 551061093 551060235 0.000000e+00 1214
16 TraesCS3A01G422500 chr6B 91.394 825 40 18 1897 2708 188576683 188577489 0.000000e+00 1101
17 TraesCS3A01G422500 chr6B 87.990 383 29 8 1839 2220 188576683 188577049 1.150000e-118 436
18 TraesCS3A01G422500 chr1B 91.084 1559 81 29 691 2220 137753688 137752159 0.000000e+00 2056
19 TraesCS3A01G422500 chr1B 94.591 869 37 7 1842 2708 137752579 137751719 0.000000e+00 1336
20 TraesCS3A01G422500 chr4A 95.303 1256 36 1 689 1921 35007091 35005836 0.000000e+00 1971
21 TraesCS3A01G422500 chr4A 91.254 869 48 15 1842 2708 35005973 35005131 0.000000e+00 1158
22 TraesCS3A01G422500 chr4A 89.227 362 17 8 1911 2268 35005962 35005619 1.490000e-117 433
23 TraesCS3A01G422500 chr2B 94.132 1261 38 11 690 1914 679883919 679882659 0.000000e+00 1886
24 TraesCS3A01G422500 chr2B 92.572 727 41 10 1986 2708 139383052 139382335 0.000000e+00 1031
25 TraesCS3A01G422500 chr1D 93.667 1279 31 13 692 1930 414332614 414333882 0.000000e+00 1868
26 TraesCS3A01G422500 chr1D 91.264 870 42 21 1839 2708 414333733 414334568 0.000000e+00 1155
27 TraesCS3A01G422500 chr3B 95.522 603 27 0 2106 2708 124932436 124933038 0.000000e+00 965
28 TraesCS3A01G422500 chr3B 89.614 414 35 8 1839 2251 124932071 124932477 1.110000e-143 520
29 TraesCS3A01G422500 chr3D 77.971 345 53 17 348 679 55189029 55189363 7.650000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G422500 chr3A 663463115 663465822 2707 False 5001.000000 5001 100.000000 1 2708 1 chr3A.!!$F2 2707
1 TraesCS3A01G422500 chr3A 599137710 599139766 2056 True 1716.000000 2290 91.994500 692 2708 2 chr3A.!!$R1 2016
2 TraesCS3A01G422500 chr3A 102574832 102575531 699 False 1182.000000 1182 97.143000 690 1389 1 chr3A.!!$F1 699
3 TraesCS3A01G422500 chr2A 114718339 114720387 2048 True 2891.000000 2891 92.454000 690 2701 1 chr2A.!!$R1 2011
4 TraesCS3A01G422500 chr2A 377676901 377677573 672 True 1051.000000 1051 94.622000 2021 2708 1 chr2A.!!$R2 687
5 TraesCS3A01G422500 chr1A 483970255 483972337 2082 True 1334.333333 2475 93.727333 689 2708 3 chr1A.!!$R1 2019
6 TraesCS3A01G422500 chr7D 500594115 500596036 1921 False 1680.000000 2163 92.931000 683 2652 2 chr7D.!!$F1 1969
7 TraesCS3A01G422500 chr6D 463503199 463504760 1561 False 2137.000000 2137 91.751000 689 2220 1 chr6D.!!$F1 1531
8 TraesCS3A01G422500 chr6D 270263058 270265027 1969 True 1719.000000 2124 93.150500 691 2708 2 chr6D.!!$R1 2017
9 TraesCS3A01G422500 chr6B 551060235 551062212 1977 True 1653.500000 2093 91.961000 692 2708 2 chr6B.!!$R1 2016
10 TraesCS3A01G422500 chr6B 188576683 188577489 806 False 768.500000 1101 89.692000 1839 2708 2 chr6B.!!$F1 869
11 TraesCS3A01G422500 chr1B 137751719 137753688 1969 True 1696.000000 2056 92.837500 691 2708 2 chr1B.!!$R1 2017
12 TraesCS3A01G422500 chr4A 35005131 35007091 1960 True 1187.333333 1971 91.928000 689 2708 3 chr4A.!!$R1 2019
13 TraesCS3A01G422500 chr2B 679882659 679883919 1260 True 1886.000000 1886 94.132000 690 1914 1 chr2B.!!$R2 1224
14 TraesCS3A01G422500 chr2B 139382335 139383052 717 True 1031.000000 1031 92.572000 1986 2708 1 chr2B.!!$R1 722
15 TraesCS3A01G422500 chr1D 414332614 414334568 1954 False 1511.500000 1868 92.465500 692 2708 2 chr1D.!!$F1 2016
16 TraesCS3A01G422500 chr3B 124932071 124933038 967 False 742.500000 965 92.568000 1839 2708 2 chr3B.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 349 0.026674 CATGCGTAATGTCGGTGCTG 59.973 55.0 0.00 0.0 0.00 4.41 F
629 630 0.039437 GCAGCCGCGAGTAGCTAATA 60.039 55.0 8.23 0.0 45.59 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1517 0.758310 TCAAATGCAAGGGCCACACA 60.758 50.000 6.18 0.0 40.13 3.72 R
1818 1861 1.736126 GTCGTCGACAGTCATCTACCA 59.264 52.381 20.28 0.0 32.09 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.072468 CGGGTTCCTCGCCAGGTA 61.072 66.667 0.00 0.00 41.28 3.08
42 43 2.582978 GGGTTCCTCGCCAGGTAC 59.417 66.667 0.00 0.00 41.28 3.34
43 44 2.183555 GGTTCCTCGCCAGGTACG 59.816 66.667 0.00 0.00 40.30 3.67
44 45 2.643232 GGTTCCTCGCCAGGTACGT 61.643 63.158 0.00 0.00 40.30 3.57
45 46 1.153881 GTTCCTCGCCAGGTACGTC 60.154 63.158 0.00 0.00 41.28 4.34
46 47 2.693762 TTCCTCGCCAGGTACGTCG 61.694 63.158 0.00 0.00 41.28 5.12
47 48 3.437795 CCTCGCCAGGTACGTCGT 61.438 66.667 2.21 2.21 34.60 4.34
48 49 2.202440 CTCGCCAGGTACGTCGTG 60.202 66.667 8.47 0.00 0.00 4.35
49 50 2.974489 CTCGCCAGGTACGTCGTGT 61.974 63.158 8.47 0.00 0.00 4.49
50 51 2.503375 CGCCAGGTACGTCGTGTC 60.503 66.667 8.47 0.91 0.00 3.67
51 52 2.960170 GCCAGGTACGTCGTGTCT 59.040 61.111 8.47 2.22 0.00 3.41
52 53 1.443872 GCCAGGTACGTCGTGTCTG 60.444 63.158 8.47 14.24 0.00 3.51
53 54 1.954528 CCAGGTACGTCGTGTCTGT 59.045 57.895 20.55 2.38 0.00 3.41
54 55 0.386858 CCAGGTACGTCGTGTCTGTG 60.387 60.000 20.55 12.61 0.00 3.66
55 56 0.309922 CAGGTACGTCGTGTCTGTGT 59.690 55.000 8.47 0.00 0.00 3.72
56 57 1.027357 AGGTACGTCGTGTCTGTGTT 58.973 50.000 8.47 0.00 0.00 3.32
57 58 1.002033 AGGTACGTCGTGTCTGTGTTC 60.002 52.381 8.47 0.00 0.00 3.18
58 59 1.402511 GTACGTCGTGTCTGTGTTCC 58.597 55.000 8.47 0.00 0.00 3.62
59 60 0.041047 TACGTCGTGTCTGTGTTCCG 60.041 55.000 8.47 0.00 0.00 4.30
60 61 2.014554 CGTCGTGTCTGTGTTCCGG 61.015 63.158 0.00 0.00 0.00 5.14
61 62 1.663702 GTCGTGTCTGTGTTCCGGG 60.664 63.158 0.00 0.00 0.00 5.73
62 63 2.357034 CGTGTCTGTGTTCCGGGG 60.357 66.667 0.00 0.00 0.00 5.73
63 64 2.668550 GTGTCTGTGTTCCGGGGC 60.669 66.667 0.00 0.00 0.00 5.80
64 65 3.164977 TGTCTGTGTTCCGGGGCA 61.165 61.111 0.00 0.00 0.00 5.36
65 66 2.112297 GTCTGTGTTCCGGGGCAA 59.888 61.111 0.00 0.00 0.00 4.52
66 67 2.112297 TCTGTGTTCCGGGGCAAC 59.888 61.111 0.00 0.00 0.00 4.17
67 68 2.113139 CTGTGTTCCGGGGCAACT 59.887 61.111 0.00 0.00 0.00 3.16
68 69 1.966451 CTGTGTTCCGGGGCAACTC 60.966 63.158 0.00 0.22 0.00 3.01
69 70 2.397413 CTGTGTTCCGGGGCAACTCT 62.397 60.000 0.00 0.00 31.17 3.24
70 71 1.671379 GTGTTCCGGGGCAACTCTC 60.671 63.158 0.00 0.00 31.17 3.20
71 72 1.841556 TGTTCCGGGGCAACTCTCT 60.842 57.895 0.00 0.00 31.17 3.10
72 73 1.079057 GTTCCGGGGCAACTCTCTC 60.079 63.158 0.00 0.00 31.17 3.20
73 74 1.229209 TTCCGGGGCAACTCTCTCT 60.229 57.895 0.00 0.00 31.17 3.10
74 75 1.544825 TTCCGGGGCAACTCTCTCTG 61.545 60.000 0.00 0.00 31.17 3.35
75 76 2.125350 CGGGGCAACTCTCTCTGC 60.125 66.667 0.00 0.00 37.86 4.26
76 77 2.947532 CGGGGCAACTCTCTCTGCA 61.948 63.158 0.00 0.00 40.46 4.41
77 78 1.376553 GGGGCAACTCTCTCTGCAC 60.377 63.158 0.00 0.00 41.43 4.57
78 79 1.376553 GGGCAACTCTCTCTGCACC 60.377 63.158 0.00 0.00 40.46 5.01
79 80 1.739562 GGCAACTCTCTCTGCACCG 60.740 63.158 0.00 0.00 40.46 4.94
80 81 2.386660 GCAACTCTCTCTGCACCGC 61.387 63.158 0.00 0.00 38.48 5.68
81 82 2.091112 CAACTCTCTCTGCACCGCG 61.091 63.158 0.00 0.00 0.00 6.46
82 83 3.288308 AACTCTCTCTGCACCGCGG 62.288 63.158 26.86 26.86 36.06 6.46
83 84 4.504916 CTCTCTCTGCACCGCGGG 62.505 72.222 31.76 19.49 35.34 6.13
105 106 4.410400 GTCTGGACCGGCCCCAAG 62.410 72.222 15.94 2.80 34.97 3.61
150 151 4.821589 CTCGGCGCCTTCCTCCAC 62.822 72.222 26.68 0.00 0.00 4.02
153 154 4.475135 GGCGCCTTCCTCCACCTC 62.475 72.222 22.15 0.00 0.00 3.85
154 155 4.821589 GCGCCTTCCTCCACCTCG 62.822 72.222 0.00 0.00 0.00 4.63
155 156 3.382832 CGCCTTCCTCCACCTCGT 61.383 66.667 0.00 0.00 0.00 4.18
156 157 2.579738 GCCTTCCTCCACCTCGTC 59.420 66.667 0.00 0.00 0.00 4.20
157 158 2.885861 CCTTCCTCCACCTCGTCG 59.114 66.667 0.00 0.00 0.00 5.12
158 159 2.711922 CCTTCCTCCACCTCGTCGG 61.712 68.421 0.00 0.00 39.35 4.79
159 160 3.358076 CTTCCTCCACCTCGTCGGC 62.358 68.421 0.00 0.00 35.61 5.54
160 161 3.881019 TTCCTCCACCTCGTCGGCT 62.881 63.158 0.00 0.00 35.61 5.52
161 162 2.439701 CCTCCACCTCGTCGGCTA 60.440 66.667 0.00 0.00 35.61 3.93
162 163 2.772691 CCTCCACCTCGTCGGCTAC 61.773 68.421 0.00 0.00 35.61 3.58
163 164 2.034532 TCCACCTCGTCGGCTACA 59.965 61.111 0.00 0.00 35.61 2.74
164 165 2.181021 CCACCTCGTCGGCTACAC 59.819 66.667 0.00 0.00 35.61 2.90
165 166 2.181021 CACCTCGTCGGCTACACC 59.819 66.667 0.00 0.00 35.61 4.16
166 167 2.282674 ACCTCGTCGGCTACACCA 60.283 61.111 0.00 0.00 39.03 4.17
167 168 2.181021 CCTCGTCGGCTACACCAC 59.819 66.667 0.00 0.00 39.03 4.16
168 169 2.181021 CTCGTCGGCTACACCACC 59.819 66.667 0.00 0.00 39.03 4.61
169 170 3.352338 CTCGTCGGCTACACCACCC 62.352 68.421 0.00 0.00 39.03 4.61
170 171 3.379445 CGTCGGCTACACCACCCT 61.379 66.667 0.00 0.00 39.03 4.34
171 172 2.577593 GTCGGCTACACCACCCTC 59.422 66.667 0.00 0.00 39.03 4.30
172 173 1.982938 GTCGGCTACACCACCCTCT 60.983 63.158 0.00 0.00 39.03 3.69
173 174 1.229082 TCGGCTACACCACCCTCTT 60.229 57.895 0.00 0.00 39.03 2.85
174 175 1.218316 CGGCTACACCACCCTCTTC 59.782 63.158 0.00 0.00 39.03 2.87
175 176 1.218316 GGCTACACCACCCTCTTCG 59.782 63.158 0.00 0.00 38.86 3.79
176 177 1.218316 GCTACACCACCCTCTTCGG 59.782 63.158 0.00 0.00 0.00 4.30
177 178 1.542187 GCTACACCACCCTCTTCGGT 61.542 60.000 0.00 0.00 36.18 4.69
202 203 4.473520 CCTGGATCACGCGCCCTT 62.474 66.667 5.73 0.00 0.00 3.95
203 204 2.499205 CTGGATCACGCGCCCTTA 59.501 61.111 5.73 0.00 0.00 2.69
204 205 1.883084 CTGGATCACGCGCCCTTAC 60.883 63.158 5.73 0.00 0.00 2.34
205 206 2.588034 GGATCACGCGCCCTTACC 60.588 66.667 5.73 0.00 0.00 2.85
206 207 2.499685 GATCACGCGCCCTTACCT 59.500 61.111 5.73 0.00 0.00 3.08
207 208 1.591863 GATCACGCGCCCTTACCTC 60.592 63.158 5.73 0.00 0.00 3.85
208 209 2.973180 GATCACGCGCCCTTACCTCC 62.973 65.000 5.73 0.00 0.00 4.30
209 210 3.771160 CACGCGCCCTTACCTCCT 61.771 66.667 5.73 0.00 0.00 3.69
210 211 3.459063 ACGCGCCCTTACCTCCTC 61.459 66.667 5.73 0.00 0.00 3.71
211 212 3.458163 CGCGCCCTTACCTCCTCA 61.458 66.667 0.00 0.00 0.00 3.86
212 213 2.187163 GCGCCCTTACCTCCTCAC 59.813 66.667 0.00 0.00 0.00 3.51
213 214 2.901042 CGCCCTTACCTCCTCACC 59.099 66.667 0.00 0.00 0.00 4.02
214 215 2.901042 GCCCTTACCTCCTCACCG 59.099 66.667 0.00 0.00 0.00 4.94
215 216 2.901042 CCCTTACCTCCTCACCGC 59.099 66.667 0.00 0.00 0.00 5.68
216 217 1.686110 CCCTTACCTCCTCACCGCT 60.686 63.158 0.00 0.00 0.00 5.52
217 218 1.517832 CCTTACCTCCTCACCGCTG 59.482 63.158 0.00 0.00 0.00 5.18
218 219 1.153549 CTTACCTCCTCACCGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
219 220 1.608717 CTTACCTCCTCACCGCTGCT 61.609 60.000 0.00 0.00 0.00 4.24
220 221 1.605058 TTACCTCCTCACCGCTGCTC 61.605 60.000 0.00 0.00 0.00 4.26
221 222 4.154347 CCTCCTCACCGCTGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
222 223 4.504916 CTCCTCACCGCTGCTCCG 62.505 72.222 0.00 0.00 0.00 4.63
230 231 4.069232 CGCTGCTCCGGGTGAAGA 62.069 66.667 8.31 0.00 0.00 2.87
231 232 2.125350 GCTGCTCCGGGTGAAGAG 60.125 66.667 8.31 0.00 0.00 2.85
232 233 2.650116 GCTGCTCCGGGTGAAGAGA 61.650 63.158 8.31 0.00 31.43 3.10
233 234 1.515020 CTGCTCCGGGTGAAGAGAG 59.485 63.158 0.00 0.00 31.43 3.20
234 235 2.185608 GCTCCGGGTGAAGAGAGC 59.814 66.667 0.00 0.00 44.36 4.09
235 236 3.700109 CTCCGGGTGAAGAGAGCA 58.300 61.111 0.00 0.00 31.43 4.26
236 237 1.515020 CTCCGGGTGAAGAGAGCAG 59.485 63.158 0.00 0.00 31.43 4.24
237 238 2.125350 CCGGGTGAAGAGAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
238 239 2.507992 CGGGTGAAGAGAGCAGCG 60.508 66.667 0.00 0.00 34.74 5.18
239 240 2.817396 GGGTGAAGAGAGCAGCGC 60.817 66.667 0.00 0.00 34.74 5.92
240 241 3.184683 GGTGAAGAGAGCAGCGCG 61.185 66.667 0.00 0.00 0.00 6.86
241 242 3.847709 GTGAAGAGAGCAGCGCGC 61.848 66.667 26.66 26.66 42.91 6.86
242 243 4.362476 TGAAGAGAGCAGCGCGCA 62.362 61.111 35.10 4.83 46.13 6.09
243 244 3.552839 GAAGAGAGCAGCGCGCAG 61.553 66.667 35.10 27.72 46.13 5.18
269 270 2.900838 GGCGATGCTGCTGCTGAT 60.901 61.111 17.00 2.51 40.48 2.90
270 271 2.632541 GCGATGCTGCTGCTGATC 59.367 61.111 17.00 10.88 40.48 2.92
271 272 2.929116 CGATGCTGCTGCTGATCG 59.071 61.111 18.93 18.93 38.24 3.69
272 273 2.595878 CGATGCTGCTGCTGATCGG 61.596 63.158 22.48 0.00 39.71 4.18
282 283 4.944372 CTGATCGGCGCCGGGTAC 62.944 72.222 44.95 31.27 40.25 3.34
340 341 2.701006 GCGTCGCATGCGTAATGT 59.299 55.556 36.50 0.00 38.65 2.71
341 342 1.366494 GCGTCGCATGCGTAATGTC 60.366 57.895 36.50 19.70 38.65 3.06
342 343 1.084915 CGTCGCATGCGTAATGTCG 60.085 57.895 36.50 25.53 38.65 4.35
343 344 1.272715 GTCGCATGCGTAATGTCGG 59.727 57.895 36.50 8.54 38.65 4.79
344 345 1.153726 TCGCATGCGTAATGTCGGT 60.154 52.632 36.50 0.00 38.65 4.69
345 346 1.012343 CGCATGCGTAATGTCGGTG 60.012 57.895 31.33 0.00 38.65 4.94
346 347 1.297598 GCATGCGTAATGTCGGTGC 60.298 57.895 0.00 0.00 38.65 5.01
347 348 1.705337 GCATGCGTAATGTCGGTGCT 61.705 55.000 0.00 0.00 38.65 4.40
348 349 0.026674 CATGCGTAATGTCGGTGCTG 59.973 55.000 0.00 0.00 0.00 4.41
349 350 1.089481 ATGCGTAATGTCGGTGCTGG 61.089 55.000 0.00 0.00 0.00 4.85
350 351 1.740296 GCGTAATGTCGGTGCTGGT 60.740 57.895 0.00 0.00 0.00 4.00
351 352 1.693083 GCGTAATGTCGGTGCTGGTC 61.693 60.000 0.00 0.00 0.00 4.02
352 353 1.410737 CGTAATGTCGGTGCTGGTCG 61.411 60.000 0.00 0.00 0.00 4.79
353 354 0.389426 GTAATGTCGGTGCTGGTCGT 60.389 55.000 0.00 0.00 0.00 4.34
354 355 1.135315 GTAATGTCGGTGCTGGTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
355 356 0.389426 AATGTCGGTGCTGGTCGTAC 60.389 55.000 0.00 0.00 0.00 3.67
356 357 1.529152 ATGTCGGTGCTGGTCGTACA 61.529 55.000 0.00 0.00 0.00 2.90
357 358 1.443872 GTCGGTGCTGGTCGTACAG 60.444 63.158 5.03 5.03 41.41 2.74
363 364 4.996976 CTGGTCGTACAGCTTGCT 57.003 55.556 0.00 0.00 0.00 3.91
364 365 3.217242 CTGGTCGTACAGCTTGCTT 57.783 52.632 0.00 0.00 0.00 3.91
365 366 1.512926 CTGGTCGTACAGCTTGCTTT 58.487 50.000 0.00 0.00 0.00 3.51
366 367 1.195448 CTGGTCGTACAGCTTGCTTTG 59.805 52.381 0.00 0.00 0.00 2.77
367 368 0.517316 GGTCGTACAGCTTGCTTTGG 59.483 55.000 0.00 0.00 0.00 3.28
368 369 0.517316 GTCGTACAGCTTGCTTTGGG 59.483 55.000 0.00 0.00 0.00 4.12
369 370 0.605319 TCGTACAGCTTGCTTTGGGG 60.605 55.000 0.00 0.00 0.00 4.96
370 371 1.586154 CGTACAGCTTGCTTTGGGGG 61.586 60.000 0.00 0.00 0.00 5.40
371 372 0.539669 GTACAGCTTGCTTTGGGGGT 60.540 55.000 0.00 0.00 0.00 4.95
372 373 0.539438 TACAGCTTGCTTTGGGGGTG 60.539 55.000 0.00 0.00 0.00 4.61
373 374 1.833934 CAGCTTGCTTTGGGGGTGT 60.834 57.895 0.00 0.00 0.00 4.16
374 375 1.075301 AGCTTGCTTTGGGGGTGTT 60.075 52.632 0.00 0.00 0.00 3.32
375 376 1.069596 GCTTGCTTTGGGGGTGTTG 59.930 57.895 0.00 0.00 0.00 3.33
376 377 1.747774 CTTGCTTTGGGGGTGTTGG 59.252 57.895 0.00 0.00 0.00 3.77
377 378 1.002274 TTGCTTTGGGGGTGTTGGT 59.998 52.632 0.00 0.00 0.00 3.67
378 379 1.333636 TTGCTTTGGGGGTGTTGGTG 61.334 55.000 0.00 0.00 0.00 4.17
379 380 2.506957 GCTTTGGGGGTGTTGGTGG 61.507 63.158 0.00 0.00 0.00 4.61
380 381 1.075600 CTTTGGGGGTGTTGGTGGT 60.076 57.895 0.00 0.00 0.00 4.16
381 382 1.381872 TTTGGGGGTGTTGGTGGTG 60.382 57.895 0.00 0.00 0.00 4.17
382 383 2.880629 TTTGGGGGTGTTGGTGGTGG 62.881 60.000 0.00 0.00 0.00 4.61
383 384 3.503839 GGGGGTGTTGGTGGTGGA 61.504 66.667 0.00 0.00 0.00 4.02
384 385 2.203437 GGGGTGTTGGTGGTGGAC 60.203 66.667 0.00 0.00 0.00 4.02
385 386 2.598467 GGGTGTTGGTGGTGGACA 59.402 61.111 0.00 0.00 0.00 4.02
386 387 1.076632 GGGTGTTGGTGGTGGACAA 60.077 57.895 0.00 0.00 0.00 3.18
387 388 1.388837 GGGTGTTGGTGGTGGACAAC 61.389 60.000 0.00 0.00 45.35 3.32
391 392 4.074854 TGGTGGTGGACAACAGGA 57.925 55.556 0.00 0.00 43.22 3.86
392 393 2.550787 TGGTGGTGGACAACAGGAT 58.449 52.632 0.00 0.00 43.22 3.24
393 394 0.110295 TGGTGGTGGACAACAGGATG 59.890 55.000 0.00 0.00 43.22 3.51
394 395 0.609131 GGTGGTGGACAACAGGATGG 60.609 60.000 0.00 0.00 43.62 3.51
395 396 0.609131 GTGGTGGACAACAGGATGGG 60.609 60.000 0.00 0.00 43.62 4.00
396 397 1.678970 GGTGGACAACAGGATGGGC 60.679 63.158 0.00 0.00 43.62 5.36
397 398 1.678970 GTGGACAACAGGATGGGCC 60.679 63.158 0.00 0.00 43.62 5.80
399 400 1.077429 GGACAACAGGATGGGCCTC 60.077 63.158 4.53 0.00 46.97 4.70
400 401 1.450312 GACAACAGGATGGGCCTCG 60.450 63.158 4.53 0.00 46.97 4.63
401 402 2.124570 CAACAGGATGGGCCTCGG 60.125 66.667 4.53 0.00 46.97 4.63
402 403 4.115199 AACAGGATGGGCCTCGGC 62.115 66.667 4.53 0.00 46.97 5.54
407 408 4.162690 GATGGGCCTCGGCGTCTT 62.163 66.667 6.85 0.00 43.06 3.01
408 409 4.473520 ATGGGCCTCGGCGTCTTG 62.474 66.667 6.85 0.00 43.06 3.02
492 493 3.660111 GCGCAGGTGGTGGTGTTC 61.660 66.667 0.30 0.00 0.00 3.18
493 494 2.111043 CGCAGGTGGTGGTGTTCT 59.889 61.111 0.00 0.00 0.00 3.01
494 495 1.525995 CGCAGGTGGTGGTGTTCTT 60.526 57.895 0.00 0.00 0.00 2.52
495 496 1.507141 CGCAGGTGGTGGTGTTCTTC 61.507 60.000 0.00 0.00 0.00 2.87
496 497 1.507141 GCAGGTGGTGGTGTTCTTCG 61.507 60.000 0.00 0.00 0.00 3.79
497 498 0.179056 CAGGTGGTGGTGTTCTTCGT 60.179 55.000 0.00 0.00 0.00 3.85
498 499 0.179056 AGGTGGTGGTGTTCTTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
499 500 0.463116 GGTGGTGGTGTTCTTCGTGT 60.463 55.000 0.00 0.00 0.00 4.49
500 501 0.655733 GTGGTGGTGTTCTTCGTGTG 59.344 55.000 0.00 0.00 0.00 3.82
501 502 1.092921 TGGTGGTGTTCTTCGTGTGC 61.093 55.000 0.00 0.00 0.00 4.57
502 503 1.092921 GGTGGTGTTCTTCGTGTGCA 61.093 55.000 0.00 0.00 0.00 4.57
503 504 0.730265 GTGGTGTTCTTCGTGTGCAA 59.270 50.000 0.00 0.00 0.00 4.08
504 505 1.013596 TGGTGTTCTTCGTGTGCAAG 58.986 50.000 0.00 0.00 0.00 4.01
505 506 0.307760 GGTGTTCTTCGTGTGCAAGG 59.692 55.000 0.00 0.00 0.00 3.61
506 507 0.307760 GTGTTCTTCGTGTGCAAGGG 59.692 55.000 0.00 0.00 0.00 3.95
507 508 1.282875 GTTCTTCGTGTGCAAGGGC 59.717 57.895 0.00 0.00 41.68 5.19
517 518 3.730761 GCAAGGGCAGCAGTGACG 61.731 66.667 0.00 0.00 40.72 4.35
518 519 3.052082 CAAGGGCAGCAGTGACGG 61.052 66.667 0.00 0.00 28.79 4.79
519 520 3.241530 AAGGGCAGCAGTGACGGA 61.242 61.111 0.00 0.00 28.79 4.69
520 521 3.245668 AAGGGCAGCAGTGACGGAG 62.246 63.158 0.00 0.00 28.79 4.63
526 527 4.803426 GCAGTGACGGAGCGGGAG 62.803 72.222 0.00 0.00 0.00 4.30
558 559 2.876645 GAGAGCTTCGACGGCGTG 60.877 66.667 21.19 10.44 38.98 5.34
559 560 4.421479 AGAGCTTCGACGGCGTGG 62.421 66.667 21.19 18.41 38.98 4.94
581 582 0.367210 GCGAACAGCGACTAAGAAGC 59.633 55.000 0.00 0.00 44.57 3.86
582 583 1.698165 CGAACAGCGACTAAGAAGCA 58.302 50.000 0.00 0.00 44.57 3.91
583 584 1.651138 CGAACAGCGACTAAGAAGCAG 59.349 52.381 0.00 0.00 44.57 4.24
584 585 1.391826 GAACAGCGACTAAGAAGCAGC 59.608 52.381 0.00 0.00 0.00 5.25
585 586 0.318441 ACAGCGACTAAGAAGCAGCA 59.682 50.000 0.00 0.00 32.65 4.41
586 587 0.997932 CAGCGACTAAGAAGCAGCAG 59.002 55.000 0.00 0.00 32.65 4.24
587 588 0.605589 AGCGACTAAGAAGCAGCAGT 59.394 50.000 0.00 0.00 32.65 4.40
588 589 0.718343 GCGACTAAGAAGCAGCAGTG 59.282 55.000 0.00 0.00 0.00 3.66
589 590 1.670087 GCGACTAAGAAGCAGCAGTGA 60.670 52.381 0.00 0.00 0.00 3.41
590 591 1.989165 CGACTAAGAAGCAGCAGTGAC 59.011 52.381 0.00 0.00 0.00 3.67
591 592 1.989165 GACTAAGAAGCAGCAGTGACG 59.011 52.381 0.00 0.00 0.00 4.35
592 593 1.337260 ACTAAGAAGCAGCAGTGACGG 60.337 52.381 0.00 0.00 0.00 4.79
593 594 0.966179 TAAGAAGCAGCAGTGACGGA 59.034 50.000 0.00 0.00 0.00 4.69
594 595 0.320247 AAGAAGCAGCAGTGACGGAG 60.320 55.000 0.00 0.00 0.00 4.63
595 596 2.358003 AAGCAGCAGTGACGGAGC 60.358 61.111 0.00 0.00 0.00 4.70
596 597 4.731612 AGCAGCAGTGACGGAGCG 62.732 66.667 0.00 0.00 0.00 5.03
613 614 3.677648 GCCCAGCAACACCAGCAG 61.678 66.667 0.00 0.00 0.00 4.24
614 615 3.677648 CCCAGCAACACCAGCAGC 61.678 66.667 0.00 0.00 0.00 5.25
615 616 3.677648 CCAGCAACACCAGCAGCC 61.678 66.667 0.00 0.00 0.00 4.85
616 617 4.034258 CAGCAACACCAGCAGCCG 62.034 66.667 0.00 0.00 0.00 5.52
622 623 4.435436 CACCAGCAGCCGCGAGTA 62.435 66.667 8.23 0.00 45.49 2.59
623 624 4.135153 ACCAGCAGCCGCGAGTAG 62.135 66.667 8.23 0.00 45.49 2.57
625 626 4.504916 CAGCAGCCGCGAGTAGCT 62.505 66.667 8.23 4.27 45.49 3.32
626 627 2.829003 AGCAGCCGCGAGTAGCTA 60.829 61.111 8.23 0.00 45.49 3.32
627 628 2.104331 GCAGCCGCGAGTAGCTAA 59.896 61.111 8.23 0.00 45.59 3.09
628 629 1.300233 GCAGCCGCGAGTAGCTAAT 60.300 57.895 8.23 0.00 45.59 1.73
629 630 0.039437 GCAGCCGCGAGTAGCTAATA 60.039 55.000 8.23 0.00 45.59 0.98
630 631 1.602165 GCAGCCGCGAGTAGCTAATAA 60.602 52.381 8.23 0.00 45.59 1.40
631 632 2.052157 CAGCCGCGAGTAGCTAATAAC 58.948 52.381 8.23 0.00 45.59 1.89
632 633 1.955080 AGCCGCGAGTAGCTAATAACT 59.045 47.619 8.23 0.00 45.59 2.24
633 634 3.058432 CAGCCGCGAGTAGCTAATAACTA 60.058 47.826 8.23 0.00 45.59 2.24
634 635 3.567164 AGCCGCGAGTAGCTAATAACTAA 59.433 43.478 8.23 0.00 45.59 2.24
635 636 3.913163 GCCGCGAGTAGCTAATAACTAAG 59.087 47.826 8.23 0.00 45.59 2.18
636 637 4.474113 CCGCGAGTAGCTAATAACTAAGG 58.526 47.826 8.23 0.00 45.59 2.69
637 638 4.474113 CGCGAGTAGCTAATAACTAAGGG 58.526 47.826 0.00 0.00 45.59 3.95
638 639 4.615452 CGCGAGTAGCTAATAACTAAGGGG 60.615 50.000 0.00 0.00 45.59 4.79
639 640 4.522022 GCGAGTAGCTAATAACTAAGGGGA 59.478 45.833 0.00 0.00 44.04 4.81
640 641 5.335819 GCGAGTAGCTAATAACTAAGGGGAG 60.336 48.000 0.00 0.00 44.04 4.30
641 642 5.769162 CGAGTAGCTAATAACTAAGGGGAGT 59.231 44.000 0.00 0.00 0.00 3.85
642 643 6.939163 CGAGTAGCTAATAACTAAGGGGAGTA 59.061 42.308 0.00 0.00 0.00 2.59
643 644 7.119553 CGAGTAGCTAATAACTAAGGGGAGTAG 59.880 44.444 0.00 0.00 0.00 2.57
644 645 7.824671 AGTAGCTAATAACTAAGGGGAGTAGT 58.175 38.462 0.00 0.00 33.12 2.73
645 646 6.980416 AGCTAATAACTAAGGGGAGTAGTG 57.020 41.667 0.00 0.00 32.10 2.74
646 647 6.442091 AGCTAATAACTAAGGGGAGTAGTGT 58.558 40.000 0.00 0.00 32.10 3.55
647 648 6.550481 AGCTAATAACTAAGGGGAGTAGTGTC 59.450 42.308 0.00 0.00 32.10 3.67
648 649 6.239261 GCTAATAACTAAGGGGAGTAGTGTCC 60.239 46.154 0.00 0.00 32.10 4.02
649 650 2.140839 ACTAAGGGGAGTAGTGTCCG 57.859 55.000 0.00 0.00 37.50 4.79
650 651 1.637553 ACTAAGGGGAGTAGTGTCCGA 59.362 52.381 0.00 0.00 37.50 4.55
651 652 2.244252 ACTAAGGGGAGTAGTGTCCGAT 59.756 50.000 0.00 0.00 37.50 4.18
652 653 2.249309 AAGGGGAGTAGTGTCCGATT 57.751 50.000 0.00 0.00 37.50 3.34
653 654 1.486211 AGGGGAGTAGTGTCCGATTG 58.514 55.000 0.00 0.00 37.50 2.67
654 655 1.006758 AGGGGAGTAGTGTCCGATTGA 59.993 52.381 0.00 0.00 37.50 2.57
655 656 2.040178 GGGGAGTAGTGTCCGATTGAT 58.960 52.381 0.00 0.00 37.50 2.57
656 657 2.036089 GGGGAGTAGTGTCCGATTGATC 59.964 54.545 0.00 0.00 37.50 2.92
657 658 2.036089 GGGAGTAGTGTCCGATTGATCC 59.964 54.545 0.00 0.00 37.50 3.36
658 659 2.693591 GGAGTAGTGTCCGATTGATCCA 59.306 50.000 0.00 0.00 0.00 3.41
659 660 3.322254 GGAGTAGTGTCCGATTGATCCAT 59.678 47.826 0.00 0.00 0.00 3.41
660 661 4.302455 GAGTAGTGTCCGATTGATCCATG 58.698 47.826 0.00 0.00 0.00 3.66
661 662 2.627515 AGTGTCCGATTGATCCATGG 57.372 50.000 4.97 4.97 0.00 3.66
662 663 1.839994 AGTGTCCGATTGATCCATGGT 59.160 47.619 12.58 0.00 0.00 3.55
663 664 1.942657 GTGTCCGATTGATCCATGGTG 59.057 52.381 12.58 0.00 0.00 4.17
664 665 1.134128 TGTCCGATTGATCCATGGTGG 60.134 52.381 12.58 3.94 39.43 4.61
676 677 3.565307 TCCATGGTGGAATGAATTAGGC 58.435 45.455 12.58 0.00 45.00 3.93
677 678 3.205056 TCCATGGTGGAATGAATTAGGCT 59.795 43.478 12.58 0.00 45.00 4.58
678 679 4.415179 TCCATGGTGGAATGAATTAGGCTA 59.585 41.667 12.58 0.00 45.00 3.93
679 680 4.763793 CCATGGTGGAATGAATTAGGCTAG 59.236 45.833 2.57 0.00 40.96 3.42
680 681 3.820557 TGGTGGAATGAATTAGGCTAGC 58.179 45.455 6.04 6.04 0.00 3.42
681 682 3.459598 TGGTGGAATGAATTAGGCTAGCT 59.540 43.478 15.72 3.22 0.00 3.32
711 712 7.125391 TCTAAGGGACAATTTGATTTATGCCT 58.875 34.615 2.79 0.00 30.66 4.75
782 788 2.639065 GTTCTGTCCACACCACTTTGA 58.361 47.619 0.00 0.00 0.00 2.69
1058 1064 2.663196 GGCTGGTTCTACTGCCGT 59.337 61.111 0.00 0.00 43.92 5.68
1078 1084 2.614134 AGAGGTAAGTGGAGCACTCT 57.386 50.000 0.00 0.00 44.62 3.24
1474 1517 1.079438 GACCCTCCTCCTCCACTGT 59.921 63.158 0.00 0.00 0.00 3.55
1556 1599 6.024552 TCACAAATTGCAGAGGGAAAATAC 57.975 37.500 0.00 0.00 0.00 1.89
1803 1846 7.090173 TGCTATTTGGTGTTCTAAATTTCTGC 58.910 34.615 0.00 0.00 36.44 4.26
1804 1847 7.090173 GCTATTTGGTGTTCTAAATTTCTGCA 58.910 34.615 0.00 0.00 36.44 4.41
1805 1848 7.274250 GCTATTTGGTGTTCTAAATTTCTGCAG 59.726 37.037 7.63 7.63 36.44 4.41
1806 1849 6.463995 TTTGGTGTTCTAAATTTCTGCAGT 57.536 33.333 14.67 0.00 0.00 4.40
1807 1850 6.463995 TTGGTGTTCTAAATTTCTGCAGTT 57.536 33.333 14.67 2.83 0.00 3.16
1808 1851 6.463995 TGGTGTTCTAAATTTCTGCAGTTT 57.536 33.333 14.67 9.72 0.00 2.66
1809 1852 6.272318 TGGTGTTCTAAATTTCTGCAGTTTG 58.728 36.000 14.67 1.77 0.00 2.93
1810 1853 5.691754 GGTGTTCTAAATTTCTGCAGTTTGG 59.308 40.000 14.67 9.28 0.00 3.28
1811 1854 6.273071 GTGTTCTAAATTTCTGCAGTTTGGT 58.727 36.000 14.67 0.41 0.00 3.67
1812 1855 6.756542 GTGTTCTAAATTTCTGCAGTTTGGTT 59.243 34.615 14.67 5.72 0.00 3.67
1813 1856 6.978080 TGTTCTAAATTTCTGCAGTTTGGTTC 59.022 34.615 14.67 7.48 0.00 3.62
1814 1857 6.707440 TCTAAATTTCTGCAGTTTGGTTCA 57.293 33.333 14.67 0.00 0.00 3.18
1815 1858 7.288810 TCTAAATTTCTGCAGTTTGGTTCAT 57.711 32.000 14.67 0.00 0.00 2.57
1816 1859 7.147312 TCTAAATTTCTGCAGTTTGGTTCATG 58.853 34.615 14.67 0.00 0.00 3.07
1817 1860 4.942761 ATTTCTGCAGTTTGGTTCATGT 57.057 36.364 14.67 0.00 0.00 3.21
1818 1861 4.734398 TTTCTGCAGTTTGGTTCATGTT 57.266 36.364 14.67 0.00 0.00 2.71
1819 1862 3.713858 TCTGCAGTTTGGTTCATGTTG 57.286 42.857 14.67 0.00 0.00 3.33
1820 1863 2.361757 TCTGCAGTTTGGTTCATGTTGG 59.638 45.455 14.67 0.00 0.00 3.77
1821 1864 2.101249 CTGCAGTTTGGTTCATGTTGGT 59.899 45.455 5.25 0.00 0.00 3.67
1822 1865 3.291584 TGCAGTTTGGTTCATGTTGGTA 58.708 40.909 0.00 0.00 0.00 3.25
1823 1866 3.317711 TGCAGTTTGGTTCATGTTGGTAG 59.682 43.478 0.00 0.00 0.00 3.18
1824 1867 3.568007 GCAGTTTGGTTCATGTTGGTAGA 59.432 43.478 0.00 0.00 0.00 2.59
1825 1868 4.218417 GCAGTTTGGTTCATGTTGGTAGAT 59.782 41.667 0.00 0.00 0.00 1.98
1826 1869 5.702865 CAGTTTGGTTCATGTTGGTAGATG 58.297 41.667 0.00 0.00 0.00 2.90
1827 1870 5.473162 CAGTTTGGTTCATGTTGGTAGATGA 59.527 40.000 0.00 0.00 32.68 2.92
1828 1871 5.473504 AGTTTGGTTCATGTTGGTAGATGAC 59.526 40.000 0.00 0.00 34.13 3.06
1829 1872 4.908601 TGGTTCATGTTGGTAGATGACT 57.091 40.909 0.00 0.00 34.13 3.41
1830 1873 4.578871 TGGTTCATGTTGGTAGATGACTG 58.421 43.478 0.00 0.00 34.13 3.51
1831 1874 4.041567 TGGTTCATGTTGGTAGATGACTGT 59.958 41.667 0.00 0.00 34.13 3.55
1832 1875 4.631813 GGTTCATGTTGGTAGATGACTGTC 59.368 45.833 0.00 0.00 34.13 3.51
1833 1876 4.110036 TCATGTTGGTAGATGACTGTCG 57.890 45.455 2.98 0.00 29.80 4.35
1834 1877 3.761752 TCATGTTGGTAGATGACTGTCGA 59.238 43.478 2.98 0.00 29.80 4.20
1835 1878 3.570926 TGTTGGTAGATGACTGTCGAC 57.429 47.619 9.11 9.11 0.00 4.20
1836 1879 2.095415 TGTTGGTAGATGACTGTCGACG 60.095 50.000 11.62 8.41 0.00 5.12
1837 1880 2.103537 TGGTAGATGACTGTCGACGA 57.896 50.000 11.62 0.00 0.00 4.20
1849 1892 2.800544 CTGTCGACGACAATTTGGTTCT 59.199 45.455 28.86 0.00 42.26 3.01
1856 1899 4.805219 ACGACAATTTGGTTCTTATTGGC 58.195 39.130 0.78 0.00 34.63 4.52
1945 2046 3.081804 GGGAGATGACCAAATTGTCGTT 58.918 45.455 0.00 0.00 38.11 3.85
1981 2082 7.558161 TTTGGTTCATATTAGCAGATGACTG 57.442 36.000 0.00 0.00 45.91 3.51
2399 2939 6.449635 AACTTCAATTGTTGTTGTCTGCTA 57.550 33.333 14.50 0.00 0.00 3.49
2625 3193 6.531923 CATCTGTTCCATCATCTACTTCCAT 58.468 40.000 0.00 0.00 0.00 3.41
2668 3245 1.134877 TCTTCTGCATTCTCAGCTCCG 60.135 52.381 0.00 0.00 34.19 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.072468 TACCTGGCGAGGAACCCG 61.072 66.667 23.01 0.00 42.93 5.28
25 26 2.582978 GTACCTGGCGAGGAACCC 59.417 66.667 23.01 2.03 42.93 4.11
26 27 2.183555 CGTACCTGGCGAGGAACC 59.816 66.667 23.01 7.34 42.93 3.62
27 28 1.153881 GACGTACCTGGCGAGGAAC 60.154 63.158 23.01 3.99 42.93 3.62
28 29 2.693762 CGACGTACCTGGCGAGGAA 61.694 63.158 23.01 0.00 42.93 3.36
29 30 3.129502 CGACGTACCTGGCGAGGA 61.130 66.667 23.01 2.10 42.93 3.71
30 31 3.437795 ACGACGTACCTGGCGAGG 61.438 66.667 14.03 14.03 46.21 4.63
31 32 2.202440 CACGACGTACCTGGCGAG 60.202 66.667 0.00 0.00 0.00 5.03
32 33 2.969806 GACACGACGTACCTGGCGA 61.970 63.158 0.00 0.00 0.00 5.54
33 34 2.503375 GACACGACGTACCTGGCG 60.503 66.667 0.00 0.00 0.00 5.69
34 35 1.443872 CAGACACGACGTACCTGGC 60.444 63.158 16.52 1.54 0.00 4.85
35 36 0.386858 CACAGACACGACGTACCTGG 60.387 60.000 23.71 13.89 0.00 4.45
36 37 0.309922 ACACAGACACGACGTACCTG 59.690 55.000 20.45 20.45 0.00 4.00
37 38 1.002033 GAACACAGACACGACGTACCT 60.002 52.381 0.00 0.00 0.00 3.08
38 39 1.402511 GAACACAGACACGACGTACC 58.597 55.000 0.00 0.00 0.00 3.34
39 40 1.402511 GGAACACAGACACGACGTAC 58.597 55.000 0.00 0.00 0.00 3.67
40 41 0.041047 CGGAACACAGACACGACGTA 60.041 55.000 0.00 0.00 0.00 3.57
41 42 1.298863 CGGAACACAGACACGACGT 60.299 57.895 0.00 0.00 0.00 4.34
42 43 2.014554 CCGGAACACAGACACGACG 61.015 63.158 0.00 0.00 0.00 5.12
43 44 1.663702 CCCGGAACACAGACACGAC 60.664 63.158 0.73 0.00 0.00 4.34
44 45 2.732016 CCCGGAACACAGACACGA 59.268 61.111 0.73 0.00 0.00 4.35
45 46 2.357034 CCCCGGAACACAGACACG 60.357 66.667 0.73 0.00 0.00 4.49
46 47 2.668550 GCCCCGGAACACAGACAC 60.669 66.667 0.73 0.00 0.00 3.67
47 48 2.747443 TTGCCCCGGAACACAGACA 61.747 57.895 0.73 0.00 0.00 3.41
48 49 2.112297 TTGCCCCGGAACACAGAC 59.888 61.111 0.73 0.00 0.00 3.51
49 50 2.112297 GTTGCCCCGGAACACAGA 59.888 61.111 0.73 0.00 0.00 3.41
50 51 1.966451 GAGTTGCCCCGGAACACAG 60.966 63.158 0.73 0.00 0.00 3.66
51 52 2.112297 GAGTTGCCCCGGAACACA 59.888 61.111 0.73 0.00 0.00 3.72
52 53 1.671379 GAGAGTTGCCCCGGAACAC 60.671 63.158 0.73 0.00 0.00 3.32
53 54 1.827399 GAGAGAGTTGCCCCGGAACA 61.827 60.000 0.73 0.00 0.00 3.18
54 55 1.079057 GAGAGAGTTGCCCCGGAAC 60.079 63.158 0.73 0.00 0.00 3.62
55 56 1.229209 AGAGAGAGTTGCCCCGGAA 60.229 57.895 0.73 0.00 0.00 4.30
56 57 1.984570 CAGAGAGAGTTGCCCCGGA 60.985 63.158 0.73 0.00 0.00 5.14
57 58 2.581354 CAGAGAGAGTTGCCCCGG 59.419 66.667 0.00 0.00 0.00 5.73
58 59 2.125350 GCAGAGAGAGTTGCCCCG 60.125 66.667 0.00 0.00 34.28 5.73
59 60 1.376553 GTGCAGAGAGAGTTGCCCC 60.377 63.158 0.00 0.00 39.54 5.80
60 61 1.376553 GGTGCAGAGAGAGTTGCCC 60.377 63.158 0.00 0.00 39.54 5.36
61 62 1.739562 CGGTGCAGAGAGAGTTGCC 60.740 63.158 0.00 0.00 39.54 4.52
62 63 2.386660 GCGGTGCAGAGAGAGTTGC 61.387 63.158 0.00 0.00 40.67 4.17
63 64 2.091112 CGCGGTGCAGAGAGAGTTG 61.091 63.158 0.00 0.00 0.00 3.16
64 65 2.259818 CGCGGTGCAGAGAGAGTT 59.740 61.111 0.00 0.00 0.00 3.01
65 66 3.753434 CCGCGGTGCAGAGAGAGT 61.753 66.667 19.50 0.00 0.00 3.24
66 67 4.504916 CCCGCGGTGCAGAGAGAG 62.505 72.222 26.12 0.00 0.00 3.20
88 89 4.410400 CTTGGGGCCGGTCCAGAC 62.410 72.222 29.79 10.61 35.48 3.51
133 134 4.821589 GTGGAGGAAGGCGCCGAG 62.822 72.222 23.20 0.00 0.00 4.63
136 137 4.475135 GAGGTGGAGGAAGGCGCC 62.475 72.222 21.89 21.89 0.00 6.53
137 138 4.821589 CGAGGTGGAGGAAGGCGC 62.822 72.222 0.00 0.00 0.00 6.53
138 139 3.358076 GACGAGGTGGAGGAAGGCG 62.358 68.421 0.00 0.00 0.00 5.52
139 140 2.579738 GACGAGGTGGAGGAAGGC 59.420 66.667 0.00 0.00 0.00 4.35
140 141 2.711922 CCGACGAGGTGGAGGAAGG 61.712 68.421 0.00 0.00 34.51 3.46
141 142 2.885861 CCGACGAGGTGGAGGAAG 59.114 66.667 0.00 0.00 34.51 3.46
142 143 2.488771 TAGCCGACGAGGTGGAGGAA 62.489 60.000 0.00 0.00 43.70 3.36
143 144 2.975265 TAGCCGACGAGGTGGAGGA 61.975 63.158 0.00 0.00 43.70 3.71
144 145 2.439701 TAGCCGACGAGGTGGAGG 60.440 66.667 0.00 0.00 43.70 4.30
145 146 2.044555 TGTAGCCGACGAGGTGGAG 61.045 63.158 0.00 0.00 43.70 3.86
146 147 2.034532 TGTAGCCGACGAGGTGGA 59.965 61.111 0.00 0.00 43.70 4.02
147 148 2.181021 GTGTAGCCGACGAGGTGG 59.819 66.667 0.00 0.00 43.70 4.61
148 149 2.181021 GGTGTAGCCGACGAGGTG 59.819 66.667 0.00 0.00 43.70 4.00
149 150 2.282674 TGGTGTAGCCGACGAGGT 60.283 61.111 0.00 0.00 43.70 3.85
150 151 2.181021 GTGGTGTAGCCGACGAGG 59.819 66.667 0.00 0.00 44.97 4.63
151 152 2.181021 GGTGGTGTAGCCGACGAG 59.819 66.667 0.00 0.00 41.21 4.18
152 153 3.376078 GGGTGGTGTAGCCGACGA 61.376 66.667 0.00 0.00 41.21 4.20
158 159 1.218316 CCGAAGAGGGTGGTGTAGC 59.782 63.158 0.00 0.00 35.97 3.58
159 160 2.667348 ACCGAAGAGGGTGGTGTAG 58.333 57.895 0.00 0.00 46.96 2.74
160 161 4.959349 ACCGAAGAGGGTGGTGTA 57.041 55.556 0.00 0.00 46.96 2.90
185 186 3.088941 TAAGGGCGCGTGATCCAGG 62.089 63.158 8.43 0.00 0.00 4.45
186 187 1.883084 GTAAGGGCGCGTGATCCAG 60.883 63.158 8.43 0.00 0.00 3.86
187 188 2.185867 GTAAGGGCGCGTGATCCA 59.814 61.111 8.43 0.00 0.00 3.41
188 189 2.588034 GGTAAGGGCGCGTGATCC 60.588 66.667 8.43 4.84 0.00 3.36
189 190 1.591863 GAGGTAAGGGCGCGTGATC 60.592 63.158 8.43 0.00 0.00 2.92
190 191 2.499685 GAGGTAAGGGCGCGTGAT 59.500 61.111 8.43 0.00 0.00 3.06
191 192 3.766691 GGAGGTAAGGGCGCGTGA 61.767 66.667 8.43 0.00 0.00 4.35
192 193 3.718210 GAGGAGGTAAGGGCGCGTG 62.718 68.421 8.43 0.00 0.00 5.34
193 194 3.459063 GAGGAGGTAAGGGCGCGT 61.459 66.667 8.43 0.00 0.00 6.01
194 195 3.458163 TGAGGAGGTAAGGGCGCG 61.458 66.667 0.00 0.00 0.00 6.86
195 196 2.187163 GTGAGGAGGTAAGGGCGC 59.813 66.667 0.00 0.00 0.00 6.53
196 197 2.901042 GGTGAGGAGGTAAGGGCG 59.099 66.667 0.00 0.00 0.00 6.13
197 198 2.901042 CGGTGAGGAGGTAAGGGC 59.099 66.667 0.00 0.00 0.00 5.19
198 199 1.686110 AGCGGTGAGGAGGTAAGGG 60.686 63.158 0.00 0.00 0.00 3.95
199 200 1.517832 CAGCGGTGAGGAGGTAAGG 59.482 63.158 9.50 0.00 0.00 2.69
200 201 1.153549 GCAGCGGTGAGGAGGTAAG 60.154 63.158 20.69 0.00 0.00 2.34
201 202 1.605058 GAGCAGCGGTGAGGAGGTAA 61.605 60.000 20.69 0.00 0.00 2.85
202 203 2.037367 AGCAGCGGTGAGGAGGTA 59.963 61.111 20.69 0.00 0.00 3.08
203 204 3.386237 GAGCAGCGGTGAGGAGGT 61.386 66.667 20.69 0.00 0.00 3.85
204 205 4.154347 GGAGCAGCGGTGAGGAGG 62.154 72.222 20.69 0.00 0.00 4.30
205 206 4.504916 CGGAGCAGCGGTGAGGAG 62.505 72.222 20.69 2.36 0.00 3.69
213 214 3.997064 CTCTTCACCCGGAGCAGCG 62.997 68.421 0.73 0.00 0.00 5.18
214 215 2.125350 CTCTTCACCCGGAGCAGC 60.125 66.667 0.73 0.00 0.00 5.25
215 216 1.515020 CTCTCTTCACCCGGAGCAG 59.485 63.158 0.73 0.00 0.00 4.24
216 217 3.700109 CTCTCTTCACCCGGAGCA 58.300 61.111 0.73 0.00 0.00 4.26
217 218 2.185608 GCTCTCTTCACCCGGAGC 59.814 66.667 0.73 0.00 43.07 4.70
218 219 1.515020 CTGCTCTCTTCACCCGGAG 59.485 63.158 0.73 0.00 0.00 4.63
219 220 2.650116 GCTGCTCTCTTCACCCGGA 61.650 63.158 0.73 0.00 0.00 5.14
220 221 2.125350 GCTGCTCTCTTCACCCGG 60.125 66.667 0.00 0.00 0.00 5.73
221 222 2.507992 CGCTGCTCTCTTCACCCG 60.508 66.667 0.00 0.00 0.00 5.28
222 223 2.817396 GCGCTGCTCTCTTCACCC 60.817 66.667 0.00 0.00 0.00 4.61
223 224 3.184683 CGCGCTGCTCTCTTCACC 61.185 66.667 5.56 0.00 0.00 4.02
224 225 3.847709 GCGCGCTGCTCTCTTCAC 61.848 66.667 26.67 0.00 41.73 3.18
225 226 4.362476 TGCGCGCTGCTCTCTTCA 62.362 61.111 33.29 4.14 46.63 3.02
226 227 3.552839 CTGCGCGCTGCTCTCTTC 61.553 66.667 33.29 0.00 46.63 2.87
252 253 2.894565 GATCAGCAGCAGCATCGCC 61.895 63.158 3.17 0.00 45.49 5.54
253 254 2.632541 GATCAGCAGCAGCATCGC 59.367 61.111 3.17 0.00 45.49 4.58
254 255 2.595878 CCGATCAGCAGCAGCATCG 61.596 63.158 14.39 14.39 45.49 3.84
255 256 2.894565 GCCGATCAGCAGCAGCATC 61.895 63.158 3.17 0.00 45.49 3.91
256 257 2.900838 GCCGATCAGCAGCAGCAT 60.901 61.111 3.17 0.00 45.49 3.79
323 324 1.366494 GACATTACGCATGCGACGC 60.366 57.895 43.72 22.21 42.83 5.19
324 325 1.084915 CGACATTACGCATGCGACG 60.085 57.895 43.72 29.53 42.83 5.12
325 326 1.272715 CCGACATTACGCATGCGAC 59.727 57.895 43.72 23.90 42.83 5.19
326 327 1.153726 ACCGACATTACGCATGCGA 60.154 52.632 43.72 25.18 42.83 5.10
327 328 1.012343 CACCGACATTACGCATGCG 60.012 57.895 36.79 36.79 46.03 4.73
328 329 1.297598 GCACCGACATTACGCATGC 60.298 57.895 7.91 7.91 36.14 4.06
329 330 0.026674 CAGCACCGACATTACGCATG 59.973 55.000 0.00 0.00 39.07 4.06
330 331 1.089481 CCAGCACCGACATTACGCAT 61.089 55.000 0.00 0.00 0.00 4.73
331 332 1.739929 CCAGCACCGACATTACGCA 60.740 57.895 0.00 0.00 0.00 5.24
332 333 1.693083 GACCAGCACCGACATTACGC 61.693 60.000 0.00 0.00 0.00 4.42
333 334 1.410737 CGACCAGCACCGACATTACG 61.411 60.000 0.00 0.00 0.00 3.18
334 335 0.389426 ACGACCAGCACCGACATTAC 60.389 55.000 0.00 0.00 0.00 1.89
335 336 1.135315 GTACGACCAGCACCGACATTA 60.135 52.381 0.00 0.00 0.00 1.90
336 337 0.389426 GTACGACCAGCACCGACATT 60.389 55.000 0.00 0.00 0.00 2.71
337 338 1.214589 GTACGACCAGCACCGACAT 59.785 57.895 0.00 0.00 0.00 3.06
338 339 2.137425 CTGTACGACCAGCACCGACA 62.137 60.000 0.00 0.00 0.00 4.35
339 340 1.443872 CTGTACGACCAGCACCGAC 60.444 63.158 0.00 0.00 0.00 4.79
340 341 2.959372 CTGTACGACCAGCACCGA 59.041 61.111 0.00 0.00 0.00 4.69
346 347 1.195448 CAAAGCAAGCTGTACGACCAG 59.805 52.381 0.00 0.00 35.49 4.00
347 348 1.225855 CAAAGCAAGCTGTACGACCA 58.774 50.000 0.00 0.00 0.00 4.02
348 349 0.517316 CCAAAGCAAGCTGTACGACC 59.483 55.000 0.00 0.00 0.00 4.79
349 350 0.517316 CCCAAAGCAAGCTGTACGAC 59.483 55.000 0.00 0.00 0.00 4.34
350 351 0.605319 CCCCAAAGCAAGCTGTACGA 60.605 55.000 0.00 0.00 0.00 3.43
351 352 1.586154 CCCCCAAAGCAAGCTGTACG 61.586 60.000 0.00 0.00 0.00 3.67
352 353 0.539669 ACCCCCAAAGCAAGCTGTAC 60.540 55.000 0.00 0.00 0.00 2.90
353 354 0.539438 CACCCCCAAAGCAAGCTGTA 60.539 55.000 0.00 0.00 0.00 2.74
354 355 1.833934 CACCCCCAAAGCAAGCTGT 60.834 57.895 0.00 0.00 0.00 4.40
355 356 1.402107 AACACCCCCAAAGCAAGCTG 61.402 55.000 0.00 0.00 0.00 4.24
356 357 1.075301 AACACCCCCAAAGCAAGCT 60.075 52.632 0.00 0.00 0.00 3.74
357 358 1.069596 CAACACCCCCAAAGCAAGC 59.930 57.895 0.00 0.00 0.00 4.01
358 359 1.048160 ACCAACACCCCCAAAGCAAG 61.048 55.000 0.00 0.00 0.00 4.01
359 360 1.002274 ACCAACACCCCCAAAGCAA 59.998 52.632 0.00 0.00 0.00 3.91
360 361 1.760086 CACCAACACCCCCAAAGCA 60.760 57.895 0.00 0.00 0.00 3.91
361 362 2.506957 CCACCAACACCCCCAAAGC 61.507 63.158 0.00 0.00 0.00 3.51
362 363 1.075600 ACCACCAACACCCCCAAAG 60.076 57.895 0.00 0.00 0.00 2.77
363 364 1.381872 CACCACCAACACCCCCAAA 60.382 57.895 0.00 0.00 0.00 3.28
364 365 2.280416 CACCACCAACACCCCCAA 59.720 61.111 0.00 0.00 0.00 4.12
365 366 3.826822 CCACCACCAACACCCCCA 61.827 66.667 0.00 0.00 0.00 4.96
366 367 3.503839 TCCACCACCAACACCCCC 61.504 66.667 0.00 0.00 0.00 5.40
367 368 2.203437 GTCCACCACCAACACCCC 60.203 66.667 0.00 0.00 0.00 4.95
368 369 1.076632 TTGTCCACCACCAACACCC 60.077 57.895 0.00 0.00 0.00 4.61
369 370 0.681564 TGTTGTCCACCACCAACACC 60.682 55.000 1.37 0.00 44.29 4.16
370 371 0.738389 CTGTTGTCCACCACCAACAC 59.262 55.000 1.37 0.00 44.29 3.32
371 372 0.395036 CCTGTTGTCCACCACCAACA 60.395 55.000 5.25 5.25 46.27 3.33
372 373 0.106918 TCCTGTTGTCCACCACCAAC 60.107 55.000 0.00 0.00 41.00 3.77
373 374 0.850100 ATCCTGTTGTCCACCACCAA 59.150 50.000 0.00 0.00 0.00 3.67
374 375 0.110295 CATCCTGTTGTCCACCACCA 59.890 55.000 0.00 0.00 0.00 4.17
375 376 0.609131 CCATCCTGTTGTCCACCACC 60.609 60.000 0.00 0.00 0.00 4.61
376 377 0.609131 CCCATCCTGTTGTCCACCAC 60.609 60.000 0.00 0.00 0.00 4.16
377 378 1.767036 CCCATCCTGTTGTCCACCA 59.233 57.895 0.00 0.00 0.00 4.17
378 379 1.678970 GCCCATCCTGTTGTCCACC 60.679 63.158 0.00 0.00 0.00 4.61
379 380 1.678970 GGCCCATCCTGTTGTCCAC 60.679 63.158 0.00 0.00 0.00 4.02
380 381 1.852157 AGGCCCATCCTGTTGTCCA 60.852 57.895 0.00 0.00 45.54 4.02
381 382 3.090765 AGGCCCATCCTGTTGTCC 58.909 61.111 0.00 0.00 45.54 4.02
390 391 4.162690 AAGACGCCGAGGCCCATC 62.163 66.667 8.72 4.21 37.98 3.51
391 392 4.473520 CAAGACGCCGAGGCCCAT 62.474 66.667 8.72 0.00 37.98 4.00
475 476 3.660111 GAACACCACCACCTGCGC 61.660 66.667 0.00 0.00 0.00 6.09
476 477 1.507141 GAAGAACACCACCACCTGCG 61.507 60.000 0.00 0.00 0.00 5.18
477 478 1.507141 CGAAGAACACCACCACCTGC 61.507 60.000 0.00 0.00 0.00 4.85
478 479 0.179056 ACGAAGAACACCACCACCTG 60.179 55.000 0.00 0.00 0.00 4.00
479 480 0.179056 CACGAAGAACACCACCACCT 60.179 55.000 0.00 0.00 0.00 4.00
480 481 0.463116 ACACGAAGAACACCACCACC 60.463 55.000 0.00 0.00 0.00 4.61
481 482 0.655733 CACACGAAGAACACCACCAC 59.344 55.000 0.00 0.00 0.00 4.16
482 483 1.092921 GCACACGAAGAACACCACCA 61.093 55.000 0.00 0.00 0.00 4.17
483 484 1.092921 TGCACACGAAGAACACCACC 61.093 55.000 0.00 0.00 0.00 4.61
484 485 0.730265 TTGCACACGAAGAACACCAC 59.270 50.000 0.00 0.00 0.00 4.16
485 486 1.013596 CTTGCACACGAAGAACACCA 58.986 50.000 0.00 0.00 0.00 4.17
486 487 0.307760 CCTTGCACACGAAGAACACC 59.692 55.000 0.00 0.00 0.00 4.16
487 488 0.307760 CCCTTGCACACGAAGAACAC 59.692 55.000 0.00 0.00 0.00 3.32
488 489 1.444119 GCCCTTGCACACGAAGAACA 61.444 55.000 0.00 0.00 37.47 3.18
489 490 1.282875 GCCCTTGCACACGAAGAAC 59.717 57.895 0.00 0.00 37.47 3.01
490 491 1.153066 TGCCCTTGCACACGAAGAA 60.153 52.632 0.00 0.00 44.23 2.52
491 492 1.597854 CTGCCCTTGCACACGAAGA 60.598 57.895 0.00 0.00 44.23 2.87
492 493 2.949106 CTGCCCTTGCACACGAAG 59.051 61.111 0.00 0.00 44.23 3.79
493 494 3.286751 GCTGCCCTTGCACACGAA 61.287 61.111 0.00 0.00 44.23 3.85
494 495 4.560743 TGCTGCCCTTGCACACGA 62.561 61.111 0.00 0.00 44.23 4.35
495 496 4.034258 CTGCTGCCCTTGCACACG 62.034 66.667 0.00 0.00 44.23 4.49
496 497 2.908940 ACTGCTGCCCTTGCACAC 60.909 61.111 0.00 0.00 44.23 3.82
497 498 2.908428 CACTGCTGCCCTTGCACA 60.908 61.111 0.00 0.00 44.23 4.57
498 499 2.595463 TCACTGCTGCCCTTGCAC 60.595 61.111 0.00 0.00 44.23 4.57
500 501 3.730761 CGTCACTGCTGCCCTTGC 61.731 66.667 0.00 0.00 38.26 4.01
501 502 3.052082 CCGTCACTGCTGCCCTTG 61.052 66.667 0.00 0.00 0.00 3.61
502 503 3.241530 TCCGTCACTGCTGCCCTT 61.242 61.111 0.00 0.00 0.00 3.95
503 504 3.699894 CTCCGTCACTGCTGCCCT 61.700 66.667 0.00 0.00 0.00 5.19
509 510 4.803426 CTCCCGCTCCGTCACTGC 62.803 72.222 0.00 0.00 0.00 4.40
510 511 4.803426 GCTCCCGCTCCGTCACTG 62.803 72.222 0.00 0.00 0.00 3.66
530 531 4.749310 AGCTCTCGCGGTTGCTGG 62.749 66.667 16.86 0.00 42.32 4.85
531 532 2.734673 GAAGCTCTCGCGGTTGCTG 61.735 63.158 17.91 0.87 42.32 4.41
532 533 2.433318 GAAGCTCTCGCGGTTGCT 60.433 61.111 6.13 10.61 42.32 3.91
533 534 3.843240 CGAAGCTCTCGCGGTTGC 61.843 66.667 6.13 8.21 41.49 4.17
541 542 2.876645 CACGCCGTCGAAGCTCTC 60.877 66.667 0.00 0.00 39.41 3.20
542 543 4.421479 CCACGCCGTCGAAGCTCT 62.421 66.667 0.00 0.00 39.41 4.09
558 559 4.789075 TAGTCGCTGTTCGCCGCC 62.789 66.667 0.00 0.00 38.27 6.13
559 560 2.789203 CTTAGTCGCTGTTCGCCGC 61.789 63.158 0.00 0.00 38.27 6.53
560 561 0.731514 TTCTTAGTCGCTGTTCGCCG 60.732 55.000 0.00 0.00 38.27 6.46
561 562 0.992802 CTTCTTAGTCGCTGTTCGCC 59.007 55.000 0.00 0.00 38.27 5.54
562 563 0.367210 GCTTCTTAGTCGCTGTTCGC 59.633 55.000 0.00 0.00 38.27 4.70
563 564 1.651138 CTGCTTCTTAGTCGCTGTTCG 59.349 52.381 0.00 0.00 40.15 3.95
564 565 1.391826 GCTGCTTCTTAGTCGCTGTTC 59.608 52.381 0.00 0.00 0.00 3.18
565 566 1.270305 TGCTGCTTCTTAGTCGCTGTT 60.270 47.619 0.00 0.00 0.00 3.16
566 567 0.318441 TGCTGCTTCTTAGTCGCTGT 59.682 50.000 0.00 0.00 0.00 4.40
567 568 0.997932 CTGCTGCTTCTTAGTCGCTG 59.002 55.000 0.00 0.00 0.00 5.18
568 569 0.605589 ACTGCTGCTTCTTAGTCGCT 59.394 50.000 0.00 0.00 0.00 4.93
569 570 0.718343 CACTGCTGCTTCTTAGTCGC 59.282 55.000 0.00 0.00 0.00 5.19
570 571 1.989165 GTCACTGCTGCTTCTTAGTCG 59.011 52.381 0.00 0.00 0.00 4.18
571 572 1.989165 CGTCACTGCTGCTTCTTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
572 573 1.337260 CCGTCACTGCTGCTTCTTAGT 60.337 52.381 0.00 0.00 0.00 2.24
573 574 1.067565 TCCGTCACTGCTGCTTCTTAG 60.068 52.381 0.00 0.00 0.00 2.18
574 575 0.966179 TCCGTCACTGCTGCTTCTTA 59.034 50.000 0.00 0.00 0.00 2.10
575 576 0.320247 CTCCGTCACTGCTGCTTCTT 60.320 55.000 0.00 0.00 0.00 2.52
576 577 1.291588 CTCCGTCACTGCTGCTTCT 59.708 57.895 0.00 0.00 0.00 2.85
577 578 2.386660 GCTCCGTCACTGCTGCTTC 61.387 63.158 0.00 0.00 0.00 3.86
578 579 2.358003 GCTCCGTCACTGCTGCTT 60.358 61.111 0.00 0.00 0.00 3.91
579 580 4.731612 CGCTCCGTCACTGCTGCT 62.732 66.667 0.00 0.00 0.00 4.24
596 597 3.677648 CTGCTGGTGTTGCTGGGC 61.678 66.667 0.00 0.00 0.00 5.36
597 598 3.677648 GCTGCTGGTGTTGCTGGG 61.678 66.667 0.00 0.00 0.00 4.45
598 599 3.677648 GGCTGCTGGTGTTGCTGG 61.678 66.667 0.00 0.00 0.00 4.85
599 600 4.034258 CGGCTGCTGGTGTTGCTG 62.034 66.667 0.00 0.00 0.00 4.41
605 606 4.435436 TACTCGCGGCTGCTGGTG 62.435 66.667 17.03 4.45 39.65 4.17
606 607 4.135153 CTACTCGCGGCTGCTGGT 62.135 66.667 17.03 15.70 39.65 4.00
608 609 2.613739 TTAGCTACTCGCGGCTGCTG 62.614 60.000 17.03 10.81 45.59 4.41
609 610 1.739338 ATTAGCTACTCGCGGCTGCT 61.739 55.000 17.03 16.89 45.59 4.24
610 611 0.039437 TATTAGCTACTCGCGGCTGC 60.039 55.000 16.38 7.70 45.59 5.25
611 612 2.052157 GTTATTAGCTACTCGCGGCTG 58.948 52.381 16.38 5.60 45.59 4.85
612 613 1.955080 AGTTATTAGCTACTCGCGGCT 59.045 47.619 6.13 9.83 45.59 5.52
613 614 2.418983 AGTTATTAGCTACTCGCGGC 57.581 50.000 6.13 0.43 45.59 6.53
614 615 4.474113 CCTTAGTTATTAGCTACTCGCGG 58.526 47.826 6.13 0.00 45.59 6.46
615 616 4.474113 CCCTTAGTTATTAGCTACTCGCG 58.526 47.826 0.00 0.00 45.59 5.87
616 617 4.522022 TCCCCTTAGTTATTAGCTACTCGC 59.478 45.833 0.00 0.00 39.57 5.03
617 618 5.769162 ACTCCCCTTAGTTATTAGCTACTCG 59.231 44.000 0.00 0.00 0.00 4.18
618 619 7.944000 ACTACTCCCCTTAGTTATTAGCTACTC 59.056 40.741 0.00 0.00 0.00 2.59
619 620 7.724951 CACTACTCCCCTTAGTTATTAGCTACT 59.275 40.741 0.00 0.00 0.00 2.57
620 621 7.505248 ACACTACTCCCCTTAGTTATTAGCTAC 59.495 40.741 0.00 0.00 0.00 3.58
621 622 7.589993 ACACTACTCCCCTTAGTTATTAGCTA 58.410 38.462 0.00 0.00 0.00 3.32
622 623 6.442091 ACACTACTCCCCTTAGTTATTAGCT 58.558 40.000 0.00 0.00 0.00 3.32
623 624 6.239261 GGACACTACTCCCCTTAGTTATTAGC 60.239 46.154 0.00 0.00 0.00 3.09
624 625 6.016443 CGGACACTACTCCCCTTAGTTATTAG 60.016 46.154 0.00 0.00 0.00 1.73
625 626 5.829924 CGGACACTACTCCCCTTAGTTATTA 59.170 44.000 0.00 0.00 0.00 0.98
626 627 4.648307 CGGACACTACTCCCCTTAGTTATT 59.352 45.833 0.00 0.00 0.00 1.40
627 628 4.079558 TCGGACACTACTCCCCTTAGTTAT 60.080 45.833 0.00 0.00 0.00 1.89
628 629 3.266772 TCGGACACTACTCCCCTTAGTTA 59.733 47.826 0.00 0.00 0.00 2.24
629 630 2.042162 TCGGACACTACTCCCCTTAGTT 59.958 50.000 0.00 0.00 0.00 2.24
630 631 1.637553 TCGGACACTACTCCCCTTAGT 59.362 52.381 0.00 0.00 0.00 2.24
631 632 2.431954 TCGGACACTACTCCCCTTAG 57.568 55.000 0.00 0.00 0.00 2.18
632 633 3.028850 CAATCGGACACTACTCCCCTTA 58.971 50.000 0.00 0.00 0.00 2.69
633 634 1.831736 CAATCGGACACTACTCCCCTT 59.168 52.381 0.00 0.00 0.00 3.95
634 635 1.006758 TCAATCGGACACTACTCCCCT 59.993 52.381 0.00 0.00 0.00 4.79
635 636 1.481871 TCAATCGGACACTACTCCCC 58.518 55.000 0.00 0.00 0.00 4.81
636 637 2.036089 GGATCAATCGGACACTACTCCC 59.964 54.545 0.00 0.00 0.00 4.30
637 638 2.693591 TGGATCAATCGGACACTACTCC 59.306 50.000 0.00 0.00 0.00 3.85
638 639 4.302455 CATGGATCAATCGGACACTACTC 58.698 47.826 0.00 0.00 0.00 2.59
639 640 3.070159 CCATGGATCAATCGGACACTACT 59.930 47.826 5.56 0.00 0.00 2.57
640 641 3.181465 ACCATGGATCAATCGGACACTAC 60.181 47.826 21.47 0.00 0.00 2.73
641 642 3.038280 ACCATGGATCAATCGGACACTA 58.962 45.455 21.47 0.00 0.00 2.74
642 643 1.839994 ACCATGGATCAATCGGACACT 59.160 47.619 21.47 0.00 0.00 3.55
643 644 1.942657 CACCATGGATCAATCGGACAC 59.057 52.381 21.47 0.00 0.00 3.67
644 645 1.134128 CCACCATGGATCAATCGGACA 60.134 52.381 21.47 0.00 40.96 4.02
645 646 1.140852 TCCACCATGGATCAATCGGAC 59.859 52.381 21.47 0.00 42.67 4.79
646 647 1.506025 TCCACCATGGATCAATCGGA 58.494 50.000 21.47 9.07 42.67 4.55
655 656 3.205056 AGCCTAATTCATTCCACCATGGA 59.795 43.478 21.47 0.00 46.61 3.41
656 657 3.569491 AGCCTAATTCATTCCACCATGG 58.431 45.455 11.19 11.19 39.43 3.66
657 658 4.217118 GCTAGCCTAATTCATTCCACCATG 59.783 45.833 2.29 0.00 0.00 3.66
658 659 4.105377 AGCTAGCCTAATTCATTCCACCAT 59.895 41.667 12.13 0.00 0.00 3.55
659 660 3.459598 AGCTAGCCTAATTCATTCCACCA 59.540 43.478 12.13 0.00 0.00 4.17
660 661 4.092116 AGCTAGCCTAATTCATTCCACC 57.908 45.455 12.13 0.00 0.00 4.61
661 662 7.751768 AATAAGCTAGCCTAATTCATTCCAC 57.248 36.000 12.13 0.00 0.00 4.02
662 663 8.220559 AGAAATAAGCTAGCCTAATTCATTCCA 58.779 33.333 18.86 0.00 0.00 3.53
663 664 8.628630 AGAAATAAGCTAGCCTAATTCATTCC 57.371 34.615 18.86 0.00 0.00 3.01
666 667 9.732130 CCTTAGAAATAAGCTAGCCTAATTCAT 57.268 33.333 18.86 9.62 0.00 2.57
667 668 8.157476 CCCTTAGAAATAAGCTAGCCTAATTCA 58.843 37.037 18.86 6.57 0.00 2.57
668 669 8.376270 TCCCTTAGAAATAAGCTAGCCTAATTC 58.624 37.037 12.13 11.85 0.00 2.17
669 670 8.158132 GTCCCTTAGAAATAAGCTAGCCTAATT 58.842 37.037 12.13 1.65 0.00 1.40
670 671 7.292591 TGTCCCTTAGAAATAAGCTAGCCTAAT 59.707 37.037 12.13 0.00 0.00 1.73
671 672 6.614087 TGTCCCTTAGAAATAAGCTAGCCTAA 59.386 38.462 12.13 9.61 0.00 2.69
672 673 6.141083 TGTCCCTTAGAAATAAGCTAGCCTA 58.859 40.000 12.13 2.59 0.00 3.93
673 674 4.969359 TGTCCCTTAGAAATAAGCTAGCCT 59.031 41.667 12.13 0.00 0.00 4.58
674 675 5.291905 TGTCCCTTAGAAATAAGCTAGCC 57.708 43.478 12.13 0.00 0.00 3.93
675 676 7.809546 AATTGTCCCTTAGAAATAAGCTAGC 57.190 36.000 6.62 6.62 0.00 3.42
676 677 9.396022 TCAAATTGTCCCTTAGAAATAAGCTAG 57.604 33.333 0.00 0.00 0.00 3.42
677 678 9.920946 ATCAAATTGTCCCTTAGAAATAAGCTA 57.079 29.630 0.00 0.00 0.00 3.32
678 679 8.829373 ATCAAATTGTCCCTTAGAAATAAGCT 57.171 30.769 0.00 0.00 0.00 3.74
679 680 9.875691 AAATCAAATTGTCCCTTAGAAATAAGC 57.124 29.630 0.00 0.00 0.00 3.09
711 712 0.113776 ACGAGGGGGACACAACTAGA 59.886 55.000 0.00 0.00 0.00 2.43
782 788 4.814234 GGAAGGGCAAAAACGAAAGAATTT 59.186 37.500 0.00 0.00 43.98 1.82
1058 1064 3.245300 ACAGAGTGCTCCACTTACCTCTA 60.245 47.826 0.00 0.00 45.44 2.43
1078 1084 2.113414 AGAAAATCCCCAAATCCCCACA 59.887 45.455 0.00 0.00 0.00 4.17
1474 1517 0.758310 TCAAATGCAAGGGCCACACA 60.758 50.000 6.18 0.00 40.13 3.72
1556 1599 2.860735 CGGTTCTTCTTTGATAGCTCCG 59.139 50.000 0.00 0.00 0.00 4.63
1803 1846 5.473162 TCATCTACCAACATGAACCAAACTG 59.527 40.000 0.00 0.00 0.00 3.16
1804 1847 5.473504 GTCATCTACCAACATGAACCAAACT 59.526 40.000 0.00 0.00 30.76 2.66
1805 1848 5.473504 AGTCATCTACCAACATGAACCAAAC 59.526 40.000 0.00 0.00 30.76 2.93
1806 1849 5.473162 CAGTCATCTACCAACATGAACCAAA 59.527 40.000 0.00 0.00 30.76 3.28
1807 1850 5.003160 CAGTCATCTACCAACATGAACCAA 58.997 41.667 0.00 0.00 30.76 3.67
1808 1851 4.041567 ACAGTCATCTACCAACATGAACCA 59.958 41.667 0.00 0.00 30.76 3.67
1809 1852 4.579869 ACAGTCATCTACCAACATGAACC 58.420 43.478 0.00 0.00 30.76 3.62
1810 1853 4.327357 CGACAGTCATCTACCAACATGAAC 59.673 45.833 0.00 0.00 30.76 3.18
1811 1854 4.219725 TCGACAGTCATCTACCAACATGAA 59.780 41.667 0.00 0.00 30.76 2.57
1812 1855 3.761752 TCGACAGTCATCTACCAACATGA 59.238 43.478 0.00 0.00 0.00 3.07
1813 1856 3.859961 GTCGACAGTCATCTACCAACATG 59.140 47.826 11.55 0.00 0.00 3.21
1814 1857 3.427638 CGTCGACAGTCATCTACCAACAT 60.428 47.826 17.16 0.00 0.00 2.71
1815 1858 2.095415 CGTCGACAGTCATCTACCAACA 60.095 50.000 17.16 0.00 0.00 3.33
1816 1859 2.161012 TCGTCGACAGTCATCTACCAAC 59.839 50.000 17.16 0.00 0.00 3.77
1817 1860 2.161012 GTCGTCGACAGTCATCTACCAA 59.839 50.000 20.28 0.00 32.09 3.67
1818 1861 1.736126 GTCGTCGACAGTCATCTACCA 59.264 52.381 20.28 0.00 32.09 3.25
1819 1862 1.736126 TGTCGTCGACAGTCATCTACC 59.264 52.381 23.70 0.00 37.67 3.18
1820 1863 3.466712 TTGTCGTCGACAGTCATCTAC 57.533 47.619 25.67 0.00 43.69 2.59
1821 1864 4.696899 AATTGTCGTCGACAGTCATCTA 57.303 40.909 25.67 11.64 43.69 1.98
1822 1865 3.577649 AATTGTCGTCGACAGTCATCT 57.422 42.857 25.67 7.49 43.69 2.90
1823 1866 3.181530 CCAAATTGTCGTCGACAGTCATC 60.182 47.826 25.67 0.00 43.69 2.92
1824 1867 2.736721 CCAAATTGTCGTCGACAGTCAT 59.263 45.455 25.67 15.38 43.69 3.06
1825 1868 2.131972 CCAAATTGTCGTCGACAGTCA 58.868 47.619 25.67 13.77 43.69 3.41
1826 1869 2.132762 ACCAAATTGTCGTCGACAGTC 58.867 47.619 25.67 6.99 43.69 3.51
1827 1870 2.234300 ACCAAATTGTCGTCGACAGT 57.766 45.000 25.67 21.28 43.69 3.55
1828 1871 2.800544 AGAACCAAATTGTCGTCGACAG 59.199 45.455 25.67 17.07 43.69 3.51
1829 1872 2.828877 AGAACCAAATTGTCGTCGACA 58.171 42.857 23.70 23.70 41.09 4.35
1830 1873 3.872560 AAGAACCAAATTGTCGTCGAC 57.127 42.857 18.51 18.51 0.00 4.20
1831 1874 5.106869 CCAATAAGAACCAAATTGTCGTCGA 60.107 40.000 0.00 0.00 0.00 4.20
1832 1875 5.086058 CCAATAAGAACCAAATTGTCGTCG 58.914 41.667 0.00 0.00 0.00 5.12
1833 1876 4.857037 GCCAATAAGAACCAAATTGTCGTC 59.143 41.667 0.00 0.00 0.00 4.20
1834 1877 4.279671 TGCCAATAAGAACCAAATTGTCGT 59.720 37.500 0.00 0.00 0.00 4.34
1835 1878 4.804108 TGCCAATAAGAACCAAATTGTCG 58.196 39.130 0.00 0.00 0.00 4.35
1836 1879 6.024552 TCTGCCAATAAGAACCAAATTGTC 57.975 37.500 0.00 0.00 0.00 3.18
1837 1880 6.211184 TCATCTGCCAATAAGAACCAAATTGT 59.789 34.615 0.00 0.00 0.00 2.71
1849 1892 4.556697 TCTCCCTAGTCATCTGCCAATAA 58.443 43.478 0.00 0.00 0.00 1.40
1856 1899 3.570540 TGGTCATCTCCCTAGTCATCTG 58.429 50.000 0.00 0.00 0.00 2.90
1903 2004 5.608437 TCCCTAGTCATCTGCCAATAAGAAT 59.392 40.000 0.00 0.00 0.00 2.40
1945 2046 2.552031 TGAACCAAATTGTCGTCGACA 58.448 42.857 23.70 23.70 41.09 4.35
1981 2082 3.600388 ACGACAATTTGGTCATCTCTCC 58.400 45.455 0.78 0.00 37.66 3.71
2019 2246 7.034685 TGTTTGATCATCTGCCAATATGAAG 57.965 36.000 0.00 0.00 35.82 3.02
2668 3245 4.240096 CCTTTGGTGAAGATGAACATTGC 58.760 43.478 0.00 0.00 37.57 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.