Multiple sequence alignment - TraesCS3A01G422200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G422200 chr3A 100.000 3080 0 0 1 3080 663442806 663439727 0.000000e+00 5688.0
1 TraesCS3A01G422200 chr3A 92.431 1308 87 8 824 2124 663452127 663450825 0.000000e+00 1857.0
2 TraesCS3A01G422200 chr3A 88.150 481 43 3 351 831 663456184 663455718 7.460000e-156 560.0
3 TraesCS3A01G422200 chr3A 83.688 141 21 2 2124 2263 19878809 19878948 6.930000e-27 132.0
4 TraesCS3A01G422200 chr3D 94.829 1779 77 11 351 2123 529497151 529495382 0.000000e+00 2761.0
5 TraesCS3A01G422200 chr3D 90.393 1197 81 8 903 2099 529503846 529502684 0.000000e+00 1543.0
6 TraesCS3A01G422200 chr3D 88.214 543 48 9 2539 3080 529487778 529487251 4.330000e-178 634.0
7 TraesCS3A01G422200 chr3D 92.105 152 11 1 2118 2269 16203757 16203607 2.410000e-51 213.0
8 TraesCS3A01G422200 chr3D 87.500 144 18 0 2120 2263 519254526 519254383 1.900000e-37 167.0
9 TraesCS3A01G422200 chr3D 89.076 119 6 1 2347 2465 529495351 529495240 1.150000e-29 141.0
10 TraesCS3A01G422200 chr3D 95.652 46 0 1 2312 2357 76935150 76935193 4.260000e-09 73.1
11 TraesCS3A01G422200 chr3B 93.833 1427 76 5 707 2123 700073626 700072202 0.000000e+00 2137.0
12 TraesCS3A01G422200 chr3B 89.652 1266 113 8 854 2115 700234691 700235942 0.000000e+00 1596.0
13 TraesCS3A01G422200 chr3B 88.971 272 26 3 369 640 700074148 700073881 1.770000e-87 333.0
14 TraesCS3A01G422200 chr3B 91.139 158 9 3 2923 3080 700071501 700071349 3.110000e-50 209.0
15 TraesCS3A01G422200 chr7D 83.524 1226 160 27 897 2090 624768989 624770204 0.000000e+00 1107.0
16 TraesCS3A01G422200 chr4A 83.741 1144 158 17 971 2094 604105236 604104101 0.000000e+00 1057.0
17 TraesCS3A01G422200 chr4A 91.905 210 14 3 156 364 585545469 585545676 1.080000e-74 291.0
18 TraesCS3A01G422200 chr5B 82.315 1227 179 25 901 2095 710608400 710609620 0.000000e+00 1029.0
19 TraesCS3A01G422200 chr2D 82.810 1082 149 20 1028 2089 13770230 13771294 0.000000e+00 933.0
20 TraesCS3A01G422200 chr2A 78.597 1126 161 44 1001 2068 723828554 723827451 0.000000e+00 671.0
21 TraesCS3A01G422200 chr2A 96.216 185 7 0 167 351 63805709 63805893 1.390000e-78 303.0
22 TraesCS3A01G422200 chr2A 92.823 209 13 2 154 361 701016680 701016887 4.990000e-78 302.0
23 TraesCS3A01G422200 chr2A 94.271 192 10 1 166 357 196517964 196518154 3.000000e-75 292.0
24 TraesCS3A01G422200 chr2A 93.299 194 12 1 157 349 728143962 728144155 5.030000e-73 285.0
25 TraesCS3A01G422200 chr2A 97.260 146 4 0 2119 2264 701916 702061 6.600000e-62 248.0
26 TraesCS3A01G422200 chr2A 97.500 40 1 0 2312 2351 185274363 185274402 5.510000e-08 69.4
27 TraesCS3A01G422200 chrUn 92.823 209 13 2 154 361 397099719 397099512 4.990000e-78 302.0
28 TraesCS3A01G422200 chrUn 92.344 209 14 2 154 361 210394716 210394923 2.320000e-76 296.0
29 TraesCS3A01G422200 chr1A 95.187 187 9 0 166 352 330766052 330765866 2.320000e-76 296.0
30 TraesCS3A01G422200 chr1A 86.364 132 17 1 2132 2263 5259737 5259867 3.200000e-30 143.0
31 TraesCS3A01G422200 chr1A 86.260 131 16 2 2132 2261 5209064 5209193 1.150000e-29 141.0
32 TraesCS3A01G422200 chr1A 97.500 40 1 0 2312 2351 433554392 433554431 5.510000e-08 69.4
33 TraesCS3A01G422200 chr1A 97.500 40 1 0 2312 2351 433757367 433757406 5.510000e-08 69.4
34 TraesCS3A01G422200 chr5A 90.654 214 14 6 153 365 569989748 569989540 2.340000e-71 279.0
35 TraesCS3A01G422200 chr5A 90.850 153 14 0 2119 2271 477005208 477005360 4.030000e-49 206.0
36 TraesCS3A01G422200 chr5A 97.059 34 0 1 2322 2355 547340875 547340907 4.290000e-04 56.5
37 TraesCS3A01G422200 chr6A 90.972 144 13 0 2120 2263 81184856 81184999 8.710000e-46 195.0
38 TraesCS3A01G422200 chr2B 85.135 148 21 1 2122 2268 641175542 641175395 1.910000e-32 150.0
39 TraesCS3A01G422200 chr4D 91.489 47 1 1 2312 2358 282196953 282196996 9.220000e-06 62.1
40 TraesCS3A01G422200 chr6B 96.774 31 1 0 2327 2357 32833410 32833380 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G422200 chr3A 663439727 663442806 3079 True 5688.0 5688 100.000000 1 3080 1 chr3A.!!$R1 3079
1 TraesCS3A01G422200 chr3A 663450825 663456184 5359 True 1208.5 1857 90.290500 351 2124 2 chr3A.!!$R2 1773
2 TraesCS3A01G422200 chr3D 529502684 529503846 1162 True 1543.0 1543 90.393000 903 2099 1 chr3D.!!$R4 1196
3 TraesCS3A01G422200 chr3D 529495240 529497151 1911 True 1451.0 2761 91.952500 351 2465 2 chr3D.!!$R5 2114
4 TraesCS3A01G422200 chr3D 529487251 529487778 527 True 634.0 634 88.214000 2539 3080 1 chr3D.!!$R3 541
5 TraesCS3A01G422200 chr3B 700234691 700235942 1251 False 1596.0 1596 89.652000 854 2115 1 chr3B.!!$F1 1261
6 TraesCS3A01G422200 chr3B 700071349 700074148 2799 True 893.0 2137 91.314333 369 3080 3 chr3B.!!$R1 2711
7 TraesCS3A01G422200 chr7D 624768989 624770204 1215 False 1107.0 1107 83.524000 897 2090 1 chr7D.!!$F1 1193
8 TraesCS3A01G422200 chr4A 604104101 604105236 1135 True 1057.0 1057 83.741000 971 2094 1 chr4A.!!$R1 1123
9 TraesCS3A01G422200 chr5B 710608400 710609620 1220 False 1029.0 1029 82.315000 901 2095 1 chr5B.!!$F1 1194
10 TraesCS3A01G422200 chr2D 13770230 13771294 1064 False 933.0 933 82.810000 1028 2089 1 chr2D.!!$F1 1061
11 TraesCS3A01G422200 chr2A 723827451 723828554 1103 True 671.0 671 78.597000 1001 2068 1 chr2A.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.248289 TTAGTGCCGAAGCTGGGTAC 59.752 55.0 14.9 14.9 40.07 3.34 F
83 84 0.248289 TGCCGAAGCTGGGTACTTAC 59.752 55.0 6.0 0.0 40.80 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 5713 1.597854 CGTTGGACAGGAGCTGCAA 60.598 57.895 8.35 0.0 34.37 4.08 R
2125 6030 1.223763 GAGGGAATCCGAACACCCC 59.776 63.158 0.00 0.0 42.97 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.912056 CCGATGATTCCATGTATTGTTATCT 57.088 36.000 0.00 0.00 32.09 1.98
25 26 8.327941 CCGATGATTCCATGTATTGTTATCTT 57.672 34.615 0.00 0.00 32.09 2.40
26 27 8.232513 CCGATGATTCCATGTATTGTTATCTTG 58.767 37.037 0.00 0.00 32.09 3.02
27 28 8.232513 CGATGATTCCATGTATTGTTATCTTGG 58.767 37.037 0.00 0.00 32.09 3.61
28 29 9.071276 GATGATTCCATGTATTGTTATCTTGGT 57.929 33.333 0.00 0.00 32.09 3.67
30 31 9.337396 TGATTCCATGTATTGTTATCTTGGTAC 57.663 33.333 0.00 0.00 0.00 3.34
31 32 9.337396 GATTCCATGTATTGTTATCTTGGTACA 57.663 33.333 0.00 0.00 0.00 2.90
32 33 9.866655 ATTCCATGTATTGTTATCTTGGTACAT 57.133 29.630 0.00 0.00 39.30 2.29
47 48 8.601845 TCTTGGTACATATATTGAAACCGATG 57.398 34.615 0.00 0.00 39.30 3.84
48 49 8.208224 TCTTGGTACATATATTGAAACCGATGT 58.792 33.333 0.00 0.00 39.30 3.06
49 50 9.483916 CTTGGTACATATATTGAAACCGATGTA 57.516 33.333 0.00 0.00 39.30 2.29
50 51 8.821147 TGGTACATATATTGAAACCGATGTAC 57.179 34.615 12.40 12.40 44.44 2.90
51 52 8.644216 TGGTACATATATTGAAACCGATGTACT 58.356 33.333 17.66 0.00 44.51 2.73
52 53 9.485206 GGTACATATATTGAAACCGATGTACTT 57.515 33.333 17.66 0.00 44.51 2.24
55 56 9.261180 ACATATATTGAAACCGATGTACTTCAG 57.739 33.333 9.22 0.45 0.00 3.02
56 57 4.946784 ATTGAAACCGATGTACTTCAGC 57.053 40.909 9.22 0.00 0.00 4.26
57 58 2.695359 TGAAACCGATGTACTTCAGCC 58.305 47.619 9.22 0.00 0.00 4.85
58 59 2.301870 TGAAACCGATGTACTTCAGCCT 59.698 45.455 9.22 0.00 0.00 4.58
59 60 3.512329 TGAAACCGATGTACTTCAGCCTA 59.488 43.478 9.22 0.00 0.00 3.93
60 61 4.161565 TGAAACCGATGTACTTCAGCCTAT 59.838 41.667 9.22 0.00 0.00 2.57
61 62 4.755266 AACCGATGTACTTCAGCCTATT 57.245 40.909 9.22 0.00 0.00 1.73
62 63 5.864418 AACCGATGTACTTCAGCCTATTA 57.136 39.130 9.22 0.00 0.00 0.98
63 64 5.455056 ACCGATGTACTTCAGCCTATTAG 57.545 43.478 9.22 0.00 0.00 1.73
64 65 4.894114 ACCGATGTACTTCAGCCTATTAGT 59.106 41.667 9.22 0.00 0.00 2.24
65 66 5.221263 ACCGATGTACTTCAGCCTATTAGTG 60.221 44.000 9.22 0.00 0.00 2.74
66 67 4.681942 CGATGTACTTCAGCCTATTAGTGC 59.318 45.833 9.22 0.00 0.00 4.40
67 68 4.402056 TGTACTTCAGCCTATTAGTGCC 57.598 45.455 0.00 0.00 0.00 5.01
68 69 2.604046 ACTTCAGCCTATTAGTGCCG 57.396 50.000 1.89 0.00 0.00 5.69
69 70 2.108168 ACTTCAGCCTATTAGTGCCGA 58.892 47.619 0.00 0.00 0.00 5.54
70 71 2.500098 ACTTCAGCCTATTAGTGCCGAA 59.500 45.455 0.00 3.08 0.00 4.30
71 72 2.890808 TCAGCCTATTAGTGCCGAAG 57.109 50.000 0.00 0.00 0.00 3.79
72 73 1.202533 TCAGCCTATTAGTGCCGAAGC 60.203 52.381 0.00 0.00 40.48 3.86
73 74 1.123928 AGCCTATTAGTGCCGAAGCT 58.876 50.000 0.00 0.00 40.80 3.74
74 75 1.202580 AGCCTATTAGTGCCGAAGCTG 60.203 52.381 0.00 0.00 40.80 4.24
75 76 1.871080 CCTATTAGTGCCGAAGCTGG 58.129 55.000 0.00 0.00 40.80 4.85
76 77 1.541233 CCTATTAGTGCCGAAGCTGGG 60.541 57.143 0.00 0.00 40.80 4.45
77 78 1.139058 CTATTAGTGCCGAAGCTGGGT 59.861 52.381 6.00 0.00 40.80 4.51
78 79 1.200519 ATTAGTGCCGAAGCTGGGTA 58.799 50.000 6.00 0.00 40.80 3.69
79 80 0.248289 TTAGTGCCGAAGCTGGGTAC 59.752 55.000 14.90 14.90 40.07 3.34
80 81 1.913762 AGTGCCGAAGCTGGGTACT 60.914 57.895 18.29 18.29 44.34 2.73
81 82 1.003718 GTGCCGAAGCTGGGTACTT 60.004 57.895 15.28 0.00 40.80 2.24
82 83 0.248289 GTGCCGAAGCTGGGTACTTA 59.752 55.000 15.28 0.00 40.80 2.24
83 84 0.248289 TGCCGAAGCTGGGTACTTAC 59.752 55.000 6.00 0.00 40.80 2.34
84 85 0.461516 GCCGAAGCTGGGTACTTACC 60.462 60.000 6.00 0.00 39.90 2.85
85 86 3.112997 GCCGAAGCTGGGTACTTACCA 62.113 57.143 7.73 0.00 41.36 3.25
86 87 4.570514 GCCGAAGCTGGGTACTTACCAA 62.571 54.545 7.73 0.00 41.36 3.67
87 88 5.988871 GCCGAAGCTGGGTACTTACCAAA 62.989 52.174 7.73 0.00 41.36 3.28
100 101 8.165239 GGTACTTACCAAAATATGCATGATCA 57.835 34.615 10.16 0.00 45.73 2.92
101 102 8.076178 GGTACTTACCAAAATATGCATGATCAC 58.924 37.037 10.16 0.00 45.73 3.06
102 103 7.643569 ACTTACCAAAATATGCATGATCACA 57.356 32.000 10.16 0.00 0.00 3.58
103 104 8.065473 ACTTACCAAAATATGCATGATCACAA 57.935 30.769 10.16 0.00 0.00 3.33
104 105 8.530311 ACTTACCAAAATATGCATGATCACAAA 58.470 29.630 10.16 0.00 0.00 2.83
105 106 9.537192 CTTACCAAAATATGCATGATCACAAAT 57.463 29.630 10.16 0.00 0.00 2.32
108 109 7.654520 ACCAAAATATGCATGATCACAAATAGC 59.345 33.333 10.16 0.00 0.00 2.97
109 110 7.870954 CCAAAATATGCATGATCACAAATAGCT 59.129 33.333 10.16 0.00 0.00 3.32
110 111 8.699749 CAAAATATGCATGATCACAAATAGCTG 58.300 33.333 10.16 0.00 0.00 4.24
111 112 3.703286 TGCATGATCACAAATAGCTGC 57.297 42.857 0.00 1.67 0.00 5.25
112 113 3.284617 TGCATGATCACAAATAGCTGCT 58.715 40.909 7.57 7.57 0.00 4.24
113 114 4.453751 TGCATGATCACAAATAGCTGCTA 58.546 39.130 12.40 12.40 0.00 3.49
114 115 4.274214 TGCATGATCACAAATAGCTGCTAC 59.726 41.667 12.26 0.00 0.00 3.58
115 116 4.320057 GCATGATCACAAATAGCTGCTACC 60.320 45.833 12.26 0.00 0.00 3.18
116 117 4.486125 TGATCACAAATAGCTGCTACCA 57.514 40.909 12.26 0.00 0.00 3.25
117 118 4.842574 TGATCACAAATAGCTGCTACCAA 58.157 39.130 12.26 0.00 0.00 3.67
118 119 5.252547 TGATCACAAATAGCTGCTACCAAA 58.747 37.500 12.26 0.00 0.00 3.28
119 120 5.709631 TGATCACAAATAGCTGCTACCAAAA 59.290 36.000 12.26 0.00 0.00 2.44
120 121 6.377996 TGATCACAAATAGCTGCTACCAAAAT 59.622 34.615 12.26 2.08 0.00 1.82
121 122 7.555914 TGATCACAAATAGCTGCTACCAAAATA 59.444 33.333 12.26 0.00 0.00 1.40
122 123 7.880160 TCACAAATAGCTGCTACCAAAATAT 57.120 32.000 12.26 0.00 0.00 1.28
123 124 7.706159 TCACAAATAGCTGCTACCAAAATATG 58.294 34.615 12.26 5.19 0.00 1.78
124 125 7.339212 TCACAAATAGCTGCTACCAAAATATGT 59.661 33.333 12.26 5.76 0.00 2.29
125 126 7.975616 CACAAATAGCTGCTACCAAAATATGTT 59.024 33.333 12.26 0.00 0.00 2.71
126 127 8.531146 ACAAATAGCTGCTACCAAAATATGTTT 58.469 29.630 12.26 1.87 0.00 2.83
127 128 8.810427 CAAATAGCTGCTACCAAAATATGTTTG 58.190 33.333 12.26 10.41 0.00 2.93
128 129 5.982890 AGCTGCTACCAAAATATGTTTGT 57.017 34.783 0.00 0.22 0.00 2.83
129 130 8.746052 ATAGCTGCTACCAAAATATGTTTGTA 57.254 30.769 12.26 1.21 0.00 2.41
130 131 7.461182 AGCTGCTACCAAAATATGTTTGTAA 57.539 32.000 0.00 0.00 0.00 2.41
131 132 8.066612 AGCTGCTACCAAAATATGTTTGTAAT 57.933 30.769 0.00 0.00 0.00 1.89
132 133 9.184523 AGCTGCTACCAAAATATGTTTGTAATA 57.815 29.630 0.00 0.00 0.00 0.98
133 134 9.796120 GCTGCTACCAAAATATGTTTGTAATAA 57.204 29.630 0.00 0.00 0.00 1.40
150 151 9.968870 TTTGTAATAAAGCATTACTTTTTCCGT 57.031 25.926 8.22 0.00 46.73 4.69
151 152 9.968870 TTGTAATAAAGCATTACTTTTTCCGTT 57.031 25.926 8.22 0.00 46.73 4.44
152 153 9.615295 TGTAATAAAGCATTACTTTTTCCGTTC 57.385 29.630 8.22 0.00 46.73 3.95
153 154 9.615295 GTAATAAAGCATTACTTTTTCCGTTCA 57.385 29.630 0.00 0.00 46.73 3.18
155 156 8.687824 ATAAAGCATTACTTTTTCCGTTCATG 57.312 30.769 0.00 0.00 46.73 3.07
156 157 5.705609 AGCATTACTTTTTCCGTTCATGT 57.294 34.783 0.00 0.00 0.00 3.21
157 158 6.084326 AGCATTACTTTTTCCGTTCATGTT 57.916 33.333 0.00 0.00 0.00 2.71
158 159 6.512297 AGCATTACTTTTTCCGTTCATGTTT 58.488 32.000 0.00 0.00 0.00 2.83
159 160 7.653647 AGCATTACTTTTTCCGTTCATGTTTA 58.346 30.769 0.00 0.00 0.00 2.01
160 161 8.138712 AGCATTACTTTTTCCGTTCATGTTTAA 58.861 29.630 0.00 0.00 0.00 1.52
161 162 8.921670 GCATTACTTTTTCCGTTCATGTTTAAT 58.078 29.630 0.00 0.00 0.00 1.40
165 166 8.710835 ACTTTTTCCGTTCATGTTTAATTTGT 57.289 26.923 0.00 0.00 0.00 2.83
166 167 8.599774 ACTTTTTCCGTTCATGTTTAATTTGTG 58.400 29.630 0.00 0.00 0.00 3.33
167 168 7.470289 TTTTCCGTTCATGTTTAATTTGTGG 57.530 32.000 0.00 0.00 0.00 4.17
168 169 5.127693 TCCGTTCATGTTTAATTTGTGGG 57.872 39.130 0.00 0.00 0.00 4.61
169 170 4.585162 TCCGTTCATGTTTAATTTGTGGGT 59.415 37.500 0.00 0.00 0.00 4.51
170 171 4.683781 CCGTTCATGTTTAATTTGTGGGTG 59.316 41.667 0.00 0.00 0.00 4.61
171 172 5.285651 CGTTCATGTTTAATTTGTGGGTGT 58.714 37.500 0.00 0.00 0.00 4.16
172 173 5.174761 CGTTCATGTTTAATTTGTGGGTGTG 59.825 40.000 0.00 0.00 0.00 3.82
173 174 5.860941 TCATGTTTAATTTGTGGGTGTGT 57.139 34.783 0.00 0.00 0.00 3.72
174 175 5.837437 TCATGTTTAATTTGTGGGTGTGTC 58.163 37.500 0.00 0.00 0.00 3.67
175 176 5.596361 TCATGTTTAATTTGTGGGTGTGTCT 59.404 36.000 0.00 0.00 0.00 3.41
176 177 6.773200 TCATGTTTAATTTGTGGGTGTGTCTA 59.227 34.615 0.00 0.00 0.00 2.59
177 178 6.627395 TGTTTAATTTGTGGGTGTGTCTAG 57.373 37.500 0.00 0.00 0.00 2.43
178 179 6.358178 TGTTTAATTTGTGGGTGTGTCTAGA 58.642 36.000 0.00 0.00 0.00 2.43
179 180 6.485313 TGTTTAATTTGTGGGTGTGTCTAGAG 59.515 38.462 0.00 0.00 0.00 2.43
180 181 2.543777 TTTGTGGGTGTGTCTAGAGC 57.456 50.000 0.00 0.00 0.00 4.09
181 182 1.419381 TTGTGGGTGTGTCTAGAGCA 58.581 50.000 0.00 0.00 0.00 4.26
182 183 0.679505 TGTGGGTGTGTCTAGAGCAC 59.320 55.000 15.41 15.41 37.37 4.40
183 184 0.679505 GTGGGTGTGTCTAGAGCACA 59.320 55.000 21.72 20.06 43.60 4.57
184 185 1.276421 GTGGGTGTGTCTAGAGCACAT 59.724 52.381 22.47 0.00 46.66 3.21
185 186 1.550524 TGGGTGTGTCTAGAGCACATC 59.449 52.381 22.47 21.78 46.66 3.06
186 187 1.827969 GGGTGTGTCTAGAGCACATCT 59.172 52.381 24.92 0.00 46.66 2.90
187 188 3.024547 GGGTGTGTCTAGAGCACATCTA 58.975 50.000 24.92 8.10 46.66 1.98
229 230 9.534565 TTATACATCTAAGTGAGTGAATCAAGC 57.465 33.333 0.00 0.00 40.43 4.01
230 231 5.798132 ACATCTAAGTGAGTGAATCAAGCA 58.202 37.500 0.00 0.00 40.43 3.91
231 232 6.413052 ACATCTAAGTGAGTGAATCAAGCAT 58.587 36.000 0.00 0.00 40.43 3.79
232 233 7.559486 ACATCTAAGTGAGTGAATCAAGCATA 58.441 34.615 0.00 0.00 40.43 3.14
233 234 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
234 235 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
235 236 8.484641 TCTAAGTGAGTGAATCAAGCATAAAG 57.515 34.615 0.00 0.00 40.43 1.85
236 237 8.314021 TCTAAGTGAGTGAATCAAGCATAAAGA 58.686 33.333 0.00 0.00 40.43 2.52
237 238 6.981762 AGTGAGTGAATCAAGCATAAAGAG 57.018 37.500 0.00 0.00 40.43 2.85
238 239 6.705302 AGTGAGTGAATCAAGCATAAAGAGA 58.295 36.000 0.00 0.00 40.43 3.10
239 240 7.164122 AGTGAGTGAATCAAGCATAAAGAGAA 58.836 34.615 0.00 0.00 40.43 2.87
240 241 7.663081 AGTGAGTGAATCAAGCATAAAGAGAAA 59.337 33.333 0.00 0.00 40.43 2.52
241 242 8.292448 GTGAGTGAATCAAGCATAAAGAGAAAA 58.708 33.333 0.00 0.00 40.43 2.29
242 243 8.849168 TGAGTGAATCAAGCATAAAGAGAAAAA 58.151 29.630 0.00 0.00 34.02 1.94
243 244 9.339492 GAGTGAATCAAGCATAAAGAGAAAAAG 57.661 33.333 0.00 0.00 0.00 2.27
244 245 9.071276 AGTGAATCAAGCATAAAGAGAAAAAGA 57.929 29.630 0.00 0.00 0.00 2.52
245 246 9.683069 GTGAATCAAGCATAAAGAGAAAAAGAA 57.317 29.630 0.00 0.00 0.00 2.52
291 292 8.900511 ACACGAATTTCAATGTAAGATCAATG 57.099 30.769 0.00 0.00 0.00 2.82
292 293 8.729756 ACACGAATTTCAATGTAAGATCAATGA 58.270 29.630 0.00 0.00 0.00 2.57
293 294 9.003112 CACGAATTTCAATGTAAGATCAATGAC 57.997 33.333 0.00 0.00 28.67 3.06
294 295 8.729756 ACGAATTTCAATGTAAGATCAATGACA 58.270 29.630 0.00 0.00 28.67 3.58
295 296 9.726232 CGAATTTCAATGTAAGATCAATGACAT 57.274 29.630 0.00 0.00 34.00 3.06
309 310 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
310 311 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
311 312 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
312 313 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
313 314 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
314 315 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
315 316 9.955102 ATGACATATGACTTAGATGTGCAATAT 57.045 29.630 10.38 0.00 41.09 1.28
316 317 9.783081 TGACATATGACTTAGATGTGCAATATT 57.217 29.630 10.38 0.00 41.09 1.28
323 324 9.612066 TGACTTAGATGTGCAATATTTATGACA 57.388 29.630 0.00 0.00 0.00 3.58
324 325 9.869844 GACTTAGATGTGCAATATTTATGACAC 57.130 33.333 0.00 0.00 0.00 3.67
325 326 9.394767 ACTTAGATGTGCAATATTTATGACACA 57.605 29.630 0.00 0.00 38.34 3.72
331 332 9.783081 ATGTGCAATATTTATGACACATCTAGA 57.217 29.630 0.00 0.00 39.26 2.43
332 333 9.783081 TGTGCAATATTTATGACACATCTAGAT 57.217 29.630 0.00 0.00 33.26 1.98
449 450 5.565637 CGCATTGCTCCTAGCTATTCTTCTA 60.566 44.000 7.12 0.00 42.97 2.10
460 461 7.658982 CCTAGCTATTCTTCTATGCATGTTCAA 59.341 37.037 10.16 0.00 0.00 2.69
494 495 4.021544 TGAGTGTTCAAAAACAAGGTGCTT 60.022 37.500 0.00 0.00 46.56 3.91
517 518 4.868116 AAACCGGTGGCACGTGCT 62.868 61.111 36.84 16.16 41.70 4.40
540 541 1.059264 GAGAAGAAAACGCCGACGATG 59.941 52.381 0.00 0.00 43.93 3.84
579 580 1.415659 TGTTGGATTGTGGCCAAAAGG 59.584 47.619 15.10 0.00 46.18 3.11
704 728 4.669318 CCAGTGCTTGCTAAATCATTGAG 58.331 43.478 0.00 0.00 0.00 3.02
789 977 8.238631 GCTAAAACCAAATATACAACCGAAGAA 58.761 33.333 0.00 0.00 0.00 2.52
947 4741 2.292569 ACTCACTACCACACACACGTAG 59.707 50.000 0.00 0.00 36.40 3.51
995 4820 2.026449 ACTGCAGAAGCTAGCTCCAATT 60.026 45.455 23.35 0.53 42.74 2.32
997 4822 3.535561 TGCAGAAGCTAGCTCCAATTAC 58.464 45.455 19.65 4.98 42.74 1.89
1683 5544 4.624364 CACCTCACGCTGGGCACA 62.624 66.667 0.00 0.00 0.00 4.57
1837 5713 1.288127 GTGAACGTGGGCGACTACT 59.712 57.895 2.31 0.00 40.14 2.57
2124 6029 2.098607 TCGTGCTTATGACCGGACTTAG 59.901 50.000 9.46 2.15 0.00 2.18
2125 6030 2.798499 CGTGCTTATGACCGGACTTAGG 60.798 54.545 9.46 6.52 0.00 2.69
2126 6031 1.760613 TGCTTATGACCGGACTTAGGG 59.239 52.381 9.46 3.25 0.00 3.53
2127 6032 1.070289 GCTTATGACCGGACTTAGGGG 59.930 57.143 9.46 0.83 0.00 4.79
2128 6033 1.692519 CTTATGACCGGACTTAGGGGG 59.307 57.143 9.46 0.00 0.00 5.40
2129 6034 0.638292 TATGACCGGACTTAGGGGGT 59.362 55.000 9.46 0.00 34.94 4.95
2130 6035 0.981277 ATGACCGGACTTAGGGGGTG 60.981 60.000 9.46 0.00 31.66 4.61
2131 6036 1.611556 GACCGGACTTAGGGGGTGT 60.612 63.158 9.46 0.00 31.66 4.16
2132 6037 1.151965 ACCGGACTTAGGGGGTGTT 60.152 57.895 9.46 0.00 0.00 3.32
2133 6038 1.196766 ACCGGACTTAGGGGGTGTTC 61.197 60.000 9.46 0.00 0.00 3.18
2134 6039 1.217244 CGGACTTAGGGGGTGTTCG 59.783 63.158 0.00 0.00 0.00 3.95
2135 6040 1.600638 GGACTTAGGGGGTGTTCGG 59.399 63.158 0.00 0.00 0.00 4.30
2136 6041 0.906282 GGACTTAGGGGGTGTTCGGA 60.906 60.000 0.00 0.00 0.00 4.55
2137 6042 1.201424 GACTTAGGGGGTGTTCGGAT 58.799 55.000 0.00 0.00 0.00 4.18
2138 6043 1.558294 GACTTAGGGGGTGTTCGGATT 59.442 52.381 0.00 0.00 0.00 3.01
2139 6044 1.558294 ACTTAGGGGGTGTTCGGATTC 59.442 52.381 0.00 0.00 0.00 2.52
2140 6045 0.913924 TTAGGGGGTGTTCGGATTCC 59.086 55.000 0.00 0.00 0.00 3.01
2141 6046 0.984432 TAGGGGGTGTTCGGATTCCC 60.984 60.000 0.00 0.00 39.22 3.97
2142 6047 2.306384 GGGGGTGTTCGGATTCCCT 61.306 63.158 6.20 0.00 39.80 4.20
2143 6048 1.223763 GGGGTGTTCGGATTCCCTC 59.776 63.158 6.20 0.00 39.80 4.30
2144 6049 1.223763 GGGTGTTCGGATTCCCTCC 59.776 63.158 0.00 0.00 41.07 4.30
2161 6066 4.200283 CGCTCCGGACTCAGCTCC 62.200 72.222 0.00 0.00 33.09 4.70
2193 6098 3.053896 GCTGCGGGCTAAAACGGT 61.054 61.111 0.00 0.00 38.06 4.83
2194 6099 2.867472 CTGCGGGCTAAAACGGTG 59.133 61.111 0.00 0.00 0.00 4.94
2195 6100 2.670251 TGCGGGCTAAAACGGTGG 60.670 61.111 0.00 0.00 0.00 4.61
2196 6101 2.358984 GCGGGCTAAAACGGTGGA 60.359 61.111 0.00 0.00 0.00 4.02
2197 6102 1.967494 GCGGGCTAAAACGGTGGAA 60.967 57.895 0.00 0.00 0.00 3.53
2198 6103 1.310216 GCGGGCTAAAACGGTGGAAT 61.310 55.000 0.00 0.00 0.00 3.01
2199 6104 1.170442 CGGGCTAAAACGGTGGAATT 58.830 50.000 0.00 0.00 0.00 2.17
2200 6105 1.135517 CGGGCTAAAACGGTGGAATTG 60.136 52.381 0.00 0.00 0.00 2.32
2201 6106 1.203758 GGGCTAAAACGGTGGAATTGG 59.796 52.381 0.00 0.00 0.00 3.16
2202 6107 2.164338 GGCTAAAACGGTGGAATTGGA 58.836 47.619 0.00 0.00 0.00 3.53
2203 6108 2.559231 GGCTAAAACGGTGGAATTGGAA 59.441 45.455 0.00 0.00 0.00 3.53
2204 6109 3.006003 GGCTAAAACGGTGGAATTGGAAA 59.994 43.478 0.00 0.00 0.00 3.13
2205 6110 4.234574 GCTAAAACGGTGGAATTGGAAAG 58.765 43.478 0.00 0.00 0.00 2.62
2206 6111 4.261867 GCTAAAACGGTGGAATTGGAAAGT 60.262 41.667 0.00 0.00 0.00 2.66
2207 6112 5.048573 GCTAAAACGGTGGAATTGGAAAGTA 60.049 40.000 0.00 0.00 0.00 2.24
2208 6113 5.447624 AAAACGGTGGAATTGGAAAGTAG 57.552 39.130 0.00 0.00 0.00 2.57
2209 6114 3.067684 ACGGTGGAATTGGAAAGTAGG 57.932 47.619 0.00 0.00 0.00 3.18
2210 6115 1.743394 CGGTGGAATTGGAAAGTAGGC 59.257 52.381 0.00 0.00 0.00 3.93
2211 6116 2.802719 GGTGGAATTGGAAAGTAGGCA 58.197 47.619 0.00 0.00 0.00 4.75
2212 6117 2.492088 GGTGGAATTGGAAAGTAGGCAC 59.508 50.000 0.00 0.00 0.00 5.01
2213 6118 3.421844 GTGGAATTGGAAAGTAGGCACT 58.578 45.455 0.00 0.00 46.37 4.40
2214 6119 3.440522 GTGGAATTGGAAAGTAGGCACTC 59.559 47.826 0.00 0.00 41.75 3.51
2215 6120 3.017442 GGAATTGGAAAGTAGGCACTCC 58.983 50.000 0.00 0.00 41.75 3.85
2216 6121 3.308473 GGAATTGGAAAGTAGGCACTCCT 60.308 47.826 0.00 0.00 46.57 3.69
2217 6122 3.636153 ATTGGAAAGTAGGCACTCCTC 57.364 47.619 0.00 0.00 43.06 3.71
2218 6123 2.024176 TGGAAAGTAGGCACTCCTCA 57.976 50.000 0.00 0.00 43.06 3.86
2219 6124 2.334977 TGGAAAGTAGGCACTCCTCAA 58.665 47.619 0.00 0.00 43.06 3.02
2220 6125 2.708861 TGGAAAGTAGGCACTCCTCAAA 59.291 45.455 0.00 0.00 43.06 2.69
2221 6126 3.330701 TGGAAAGTAGGCACTCCTCAAAT 59.669 43.478 0.00 0.00 43.06 2.32
2222 6127 4.202567 TGGAAAGTAGGCACTCCTCAAATT 60.203 41.667 0.00 0.00 43.06 1.82
2223 6128 4.396478 GGAAAGTAGGCACTCCTCAAATTC 59.604 45.833 0.00 0.00 43.06 2.17
2224 6129 4.917906 AAGTAGGCACTCCTCAAATTCT 57.082 40.909 0.00 0.00 43.06 2.40
2225 6130 4.213564 AGTAGGCACTCCTCAAATTCTG 57.786 45.455 0.00 0.00 43.06 3.02
2226 6131 3.584848 AGTAGGCACTCCTCAAATTCTGT 59.415 43.478 0.00 0.00 43.06 3.41
2227 6132 4.777896 AGTAGGCACTCCTCAAATTCTGTA 59.222 41.667 0.00 0.00 43.06 2.74
2228 6133 4.640771 AGGCACTCCTCAAATTCTGTAA 57.359 40.909 0.00 0.00 38.72 2.41
2229 6134 5.184892 AGGCACTCCTCAAATTCTGTAAT 57.815 39.130 0.00 0.00 38.72 1.89
2230 6135 5.574188 AGGCACTCCTCAAATTCTGTAATT 58.426 37.500 0.00 0.00 38.72 1.40
2231 6136 6.012745 AGGCACTCCTCAAATTCTGTAATTT 58.987 36.000 0.00 0.00 38.72 1.82
2232 6137 6.494835 AGGCACTCCTCAAATTCTGTAATTTT 59.505 34.615 0.00 0.00 39.03 1.82
2233 6138 6.587608 GGCACTCCTCAAATTCTGTAATTTTG 59.412 38.462 0.00 0.00 41.50 2.44
2234 6139 6.089954 GCACTCCTCAAATTCTGTAATTTTGC 59.910 38.462 0.00 0.00 41.50 3.68
2235 6140 6.306356 CACTCCTCAAATTCTGTAATTTTGCG 59.694 38.462 0.00 0.00 41.50 4.85
2236 6141 5.708948 TCCTCAAATTCTGTAATTTTGCGG 58.291 37.500 0.00 0.00 41.50 5.69
2237 6142 5.475220 TCCTCAAATTCTGTAATTTTGCGGA 59.525 36.000 3.03 3.03 41.50 5.54
2238 6143 5.801947 CCTCAAATTCTGTAATTTTGCGGAG 59.198 40.000 0.00 0.00 41.50 4.63
2240 6145 5.391312 AAATTCTGTAATTTTGCGGAGCT 57.609 34.783 0.00 0.00 45.97 4.09
2241 6146 4.737054 AATTCTGTAATTTTGCGGAGCTG 58.263 39.130 0.00 0.00 43.41 4.24
2242 6147 4.380867 AATTCTGTAATTTTGCGGAGCTGG 60.381 41.667 0.00 0.00 43.41 4.85
2243 6148 6.785710 AATTCTGTAATTTTGCGGAGCTGGT 61.786 40.000 0.00 0.00 43.41 4.00
2244 6149 8.715284 AATTCTGTAATTTTGCGGAGCTGGTG 62.715 42.308 0.00 0.00 43.41 4.17
2251 6156 4.154347 CGGAGCTGGTGGAGAGCC 62.154 72.222 0.00 0.00 37.12 4.70
2252 6157 4.154347 GGAGCTGGTGGAGAGCCG 62.154 72.222 0.00 0.00 37.12 5.52
2253 6158 3.071206 GAGCTGGTGGAGAGCCGA 61.071 66.667 0.00 0.00 37.12 5.54
2254 6159 2.604686 AGCTGGTGGAGAGCCGAA 60.605 61.111 0.00 0.00 37.12 4.30
2255 6160 2.435059 GCTGGTGGAGAGCCGAAC 60.435 66.667 0.00 0.00 36.79 3.95
2256 6161 3.059982 CTGGTGGAGAGCCGAACA 58.940 61.111 0.00 0.00 36.79 3.18
2257 6162 1.079543 CTGGTGGAGAGCCGAACAG 60.080 63.158 0.00 0.00 36.79 3.16
2258 6163 2.266055 GGTGGAGAGCCGAACAGG 59.734 66.667 0.00 0.00 44.97 4.00
2270 6175 2.167662 CCGAACAGGCCCTTATTGTTT 58.832 47.619 8.56 0.00 35.35 2.83
2286 6191 8.859090 CCTTATTGTTTGGGCTTGAATCATATA 58.141 33.333 0.00 0.00 0.00 0.86
2288 6193 6.463995 TTGTTTGGGCTTGAATCATATACC 57.536 37.500 0.00 0.00 0.00 2.73
2294 6199 5.606749 TGGGCTTGAATCATATACCAGTACT 59.393 40.000 0.00 0.00 0.00 2.73
2295 6200 6.166982 GGGCTTGAATCATATACCAGTACTC 58.833 44.000 0.00 0.00 0.00 2.59
2296 6201 6.166982 GGCTTGAATCATATACCAGTACTCC 58.833 44.000 0.00 0.00 0.00 3.85
2297 6202 6.166982 GCTTGAATCATATACCAGTACTCCC 58.833 44.000 0.00 0.00 0.00 4.30
2298 6203 6.014156 GCTTGAATCATATACCAGTACTCCCT 60.014 42.308 0.00 0.00 0.00 4.20
2299 6204 7.540474 TTGAATCATATACCAGTACTCCCTC 57.460 40.000 0.00 0.00 0.00 4.30
2300 6205 6.864421 TGAATCATATACCAGTACTCCCTCT 58.136 40.000 0.00 0.00 0.00 3.69
2301 6206 7.306013 TGAATCATATACCAGTACTCCCTCTT 58.694 38.462 0.00 0.00 0.00 2.85
2302 6207 7.789831 TGAATCATATACCAGTACTCCCTCTTT 59.210 37.037 0.00 0.00 0.00 2.52
2303 6208 9.310449 GAATCATATACCAGTACTCCCTCTTTA 57.690 37.037 0.00 0.00 0.00 1.85
2304 6209 9.670442 AATCATATACCAGTACTCCCTCTTTAA 57.330 33.333 0.00 0.00 0.00 1.52
2305 6210 9.670442 ATCATATACCAGTACTCCCTCTTTAAA 57.330 33.333 0.00 0.00 0.00 1.52
2306 6211 9.144298 TCATATACCAGTACTCCCTCTTTAAAG 57.856 37.037 9.04 9.04 0.00 1.85
2307 6212 9.144298 CATATACCAGTACTCCCTCTTTAAAGA 57.856 37.037 16.85 16.85 0.00 2.52
2308 6213 9.725206 ATATACCAGTACTCCCTCTTTAAAGAA 57.275 33.333 18.25 3.85 34.03 2.52
2309 6214 6.758806 ACCAGTACTCCCTCTTTAAAGAAA 57.241 37.500 18.25 6.85 34.03 2.52
2310 6215 7.331089 ACCAGTACTCCCTCTTTAAAGAAAT 57.669 36.000 18.25 0.00 34.03 2.17
2311 6216 8.445361 ACCAGTACTCCCTCTTTAAAGAAATA 57.555 34.615 18.25 6.20 34.03 1.40
2312 6217 9.059023 ACCAGTACTCCCTCTTTAAAGAAATAT 57.941 33.333 18.25 6.62 34.03 1.28
2313 6218 9.549078 CCAGTACTCCCTCTTTAAAGAAATATC 57.451 37.037 18.25 6.81 34.03 1.63
2320 6225 9.106070 TCCCTCTTTAAAGAAATATCTAAACGC 57.894 33.333 18.25 0.00 33.77 4.84
2321 6226 9.110502 CCCTCTTTAAAGAAATATCTAAACGCT 57.889 33.333 18.25 0.00 33.77 5.07
2341 6246 8.571461 AACGCTCTTATAGTATTTCTTTACGG 57.429 34.615 0.00 0.00 0.00 4.02
2342 6247 7.934457 ACGCTCTTATAGTATTTCTTTACGGA 58.066 34.615 0.00 0.00 0.00 4.69
2343 6248 8.074972 ACGCTCTTATAGTATTTCTTTACGGAG 58.925 37.037 0.00 0.00 0.00 4.63
2344 6249 7.537991 CGCTCTTATAGTATTTCTTTACGGAGG 59.462 40.741 0.00 0.00 0.00 4.30
2345 6250 7.813627 GCTCTTATAGTATTTCTTTACGGAGGG 59.186 40.741 0.00 0.00 0.00 4.30
2372 6277 6.494893 ACATCTTAGCAACGCAAGAATAAA 57.505 33.333 5.42 0.00 43.62 1.40
2381 6286 5.474545 CAACGCAAGAATAAAATGCAATCG 58.525 37.500 0.00 0.00 40.04 3.34
2398 6303 4.201822 GCAATCGTTGTACTCTTCCCAATC 60.202 45.833 0.00 0.00 0.00 2.67
2414 6319 3.362295 CCAATCGCGATATTGTGGTTTG 58.638 45.455 24.00 13.82 35.48 2.93
2415 6320 3.181501 CCAATCGCGATATTGTGGTTTGT 60.182 43.478 24.00 0.00 35.48 2.83
2417 6322 1.735018 TCGCGATATTGTGGTTTGTGG 59.265 47.619 3.71 0.00 0.00 4.17
2418 6323 1.735018 CGCGATATTGTGGTTTGTGGA 59.265 47.619 0.00 0.00 0.00 4.02
2420 6325 3.181501 CGCGATATTGTGGTTTGTGGATT 60.182 43.478 0.00 0.00 0.00 3.01
2421 6326 4.351192 GCGATATTGTGGTTTGTGGATTC 58.649 43.478 0.00 0.00 0.00 2.52
2422 6327 4.142491 GCGATATTGTGGTTTGTGGATTCA 60.142 41.667 0.00 0.00 0.00 2.57
2423 6328 5.572211 CGATATTGTGGTTTGTGGATTCAG 58.428 41.667 0.00 0.00 0.00 3.02
2424 6329 5.123820 CGATATTGTGGTTTGTGGATTCAGT 59.876 40.000 0.00 0.00 0.00 3.41
2425 6330 6.349280 CGATATTGTGGTTTGTGGATTCAGTT 60.349 38.462 0.00 0.00 0.00 3.16
2426 6331 4.383850 TTGTGGTTTGTGGATTCAGTTG 57.616 40.909 0.00 0.00 0.00 3.16
2459 6364 7.995488 CAGATAAGATTTAATTCCCTGAGGTGT 59.005 37.037 0.00 0.00 0.00 4.16
2465 6370 8.832735 AGATTTAATTCCCTGAGGTGTTAACTA 58.167 33.333 7.22 0.00 0.00 2.24
2466 6371 9.457436 GATTTAATTCCCTGAGGTGTTAACTAA 57.543 33.333 7.22 0.00 0.00 2.24
2467 6372 9.816787 ATTTAATTCCCTGAGGTGTTAACTAAA 57.183 29.630 7.22 0.00 0.00 1.85
2468 6373 9.643735 TTTAATTCCCTGAGGTGTTAACTAAAA 57.356 29.630 7.22 0.00 0.00 1.52
2469 6374 7.520451 AATTCCCTGAGGTGTTAACTAAAAC 57.480 36.000 7.22 0.00 0.00 2.43
2470 6375 5.633655 TCCCTGAGGTGTTAACTAAAACA 57.366 39.130 7.22 0.87 37.03 2.83
2471 6376 6.195600 TCCCTGAGGTGTTAACTAAAACAT 57.804 37.500 7.22 0.00 41.18 2.71
2472 6377 6.001460 TCCCTGAGGTGTTAACTAAAACATG 58.999 40.000 7.22 0.00 41.18 3.21
2473 6378 5.768164 CCCTGAGGTGTTAACTAAAACATGT 59.232 40.000 7.22 0.00 41.18 3.21
2474 6379 6.072673 CCCTGAGGTGTTAACTAAAACATGTC 60.073 42.308 7.22 0.00 41.18 3.06
2475 6380 6.710744 CCTGAGGTGTTAACTAAAACATGTCT 59.289 38.462 7.22 0.00 41.18 3.41
2476 6381 7.876068 CCTGAGGTGTTAACTAAAACATGTCTA 59.124 37.037 7.22 0.00 41.18 2.59
2477 6382 8.827177 TGAGGTGTTAACTAAAACATGTCTAG 57.173 34.615 7.22 6.11 41.18 2.43
2478 6383 8.426489 TGAGGTGTTAACTAAAACATGTCTAGT 58.574 33.333 12.59 12.59 41.18 2.57
2479 6384 9.918630 GAGGTGTTAACTAAAACATGTCTAGTA 57.081 33.333 16.78 4.50 41.18 1.82
2480 6385 9.702494 AGGTGTTAACTAAAACATGTCTAGTAC 57.298 33.333 16.78 13.61 41.18 2.73
2481 6386 9.480053 GGTGTTAACTAAAACATGTCTAGTACA 57.520 33.333 16.78 15.33 41.18 2.90
2514 6419 9.585099 TTTTGATAAATGGAAGTCATGTATTGC 57.415 29.630 0.00 0.00 36.63 3.56
2515 6420 6.958255 TGATAAATGGAAGTCATGTATTGCG 58.042 36.000 0.00 0.00 36.63 4.85
2516 6421 4.637483 AAATGGAAGTCATGTATTGCGG 57.363 40.909 0.00 0.00 35.99 5.69
2517 6422 3.558931 ATGGAAGTCATGTATTGCGGA 57.441 42.857 0.00 0.00 34.22 5.54
2518 6423 3.342377 TGGAAGTCATGTATTGCGGAA 57.658 42.857 0.00 0.00 0.00 4.30
2519 6424 3.006940 TGGAAGTCATGTATTGCGGAAC 58.993 45.455 0.00 0.00 0.00 3.62
2520 6425 5.739979 ATGGAAGTCATGTATTGCGGAACG 61.740 45.833 0.00 0.00 45.51 3.95
2535 6440 2.696506 GGAACGGAGGGAGTAGTTTTG 58.303 52.381 0.00 0.00 0.00 2.44
2536 6441 2.301009 GGAACGGAGGGAGTAGTTTTGA 59.699 50.000 0.00 0.00 0.00 2.69
2537 6442 3.055312 GGAACGGAGGGAGTAGTTTTGAT 60.055 47.826 0.00 0.00 0.00 2.57
2547 6452 7.331791 AGGGAGTAGTTTTGATGACTGATTAC 58.668 38.462 0.00 0.00 0.00 1.89
2576 6481 0.387878 GCCTACGGATCTCGCTGATG 60.388 60.000 3.85 0.00 43.89 3.07
2577 6482 0.242286 CCTACGGATCTCGCTGATGG 59.758 60.000 3.85 0.00 43.89 3.51
2582 6487 0.465705 GGATCTCGCTGATGGAACCA 59.534 55.000 0.00 0.00 35.14 3.67
2687 6596 2.226330 TGTCGGTGAACCAAATGGAAG 58.774 47.619 6.42 0.00 38.94 3.46
2689 6598 0.243636 CGGTGAACCAAATGGAAGGC 59.756 55.000 6.42 0.00 38.94 4.35
2692 6601 1.818674 GTGAACCAAATGGAAGGCGAT 59.181 47.619 6.42 0.00 38.94 4.58
2701 6610 2.122783 TGGAAGGCGATTTGTAAGGG 57.877 50.000 0.00 0.00 0.00 3.95
2712 6621 4.201822 CGATTTGTAAGGGTAAGCTTCTGC 60.202 45.833 0.00 0.00 40.05 4.26
2727 6636 5.917462 AGCTTCTGCCAGTTAAATTTGTTT 58.083 33.333 0.00 0.00 40.80 2.83
2728 6637 5.754890 AGCTTCTGCCAGTTAAATTTGTTTG 59.245 36.000 0.00 0.00 40.80 2.93
2732 6641 9.132521 CTTCTGCCAGTTAAATTTGTTTGATAG 57.867 33.333 0.00 0.00 0.00 2.08
2733 6642 7.601856 TCTGCCAGTTAAATTTGTTTGATAGG 58.398 34.615 0.00 0.00 0.00 2.57
2734 6643 7.450014 TCTGCCAGTTAAATTTGTTTGATAGGA 59.550 33.333 0.00 0.00 0.00 2.94
2736 6645 7.232534 TGCCAGTTAAATTTGTTTGATAGGAGT 59.767 33.333 0.00 0.00 0.00 3.85
2737 6646 8.736244 GCCAGTTAAATTTGTTTGATAGGAGTA 58.264 33.333 0.00 0.00 0.00 2.59
2774 6852 8.503196 TGTATGTACAGAGTTTAAATGCTTGTG 58.497 33.333 0.33 0.00 0.00 3.33
2775 6853 6.935741 TGTACAGAGTTTAAATGCTTGTGT 57.064 33.333 0.00 0.00 0.00 3.72
2786 6864 9.834628 GTTTAAATGCTTGTGTAATGTAAGCTA 57.165 29.630 9.27 0.00 45.24 3.32
2796 6874 6.038161 TGTGTAATGTAAGCTAATGCACCATC 59.962 38.462 0.00 0.00 42.74 3.51
2800 6878 5.756195 TGTAAGCTAATGCACCATCATTC 57.244 39.130 0.00 0.00 42.74 2.67
2804 6882 2.555757 GCTAATGCACCATCATTCCCTC 59.444 50.000 0.00 0.00 37.75 4.30
2808 6886 0.753111 GCACCATCATTCCCTCCCAC 60.753 60.000 0.00 0.00 0.00 4.61
2809 6887 0.625316 CACCATCATTCCCTCCCACA 59.375 55.000 0.00 0.00 0.00 4.17
2810 6888 1.216175 CACCATCATTCCCTCCCACAT 59.784 52.381 0.00 0.00 0.00 3.21
2865 6943 4.041198 ACCAAACAGGCACTAGTAAGCTAA 59.959 41.667 0.00 0.00 43.14 3.09
2866 6944 5.186198 CCAAACAGGCACTAGTAAGCTAAT 58.814 41.667 0.00 0.00 36.02 1.73
2868 6946 6.258068 CCAAACAGGCACTAGTAAGCTAATAC 59.742 42.308 0.00 0.00 36.02 1.89
2869 6947 5.532664 ACAGGCACTAGTAAGCTAATACC 57.467 43.478 0.00 0.00 36.02 2.73
2870 6948 5.209659 ACAGGCACTAGTAAGCTAATACCT 58.790 41.667 0.00 0.00 36.02 3.08
2871 6949 5.661759 ACAGGCACTAGTAAGCTAATACCTT 59.338 40.000 0.00 0.00 36.02 3.50
2872 6950 6.183360 ACAGGCACTAGTAAGCTAATACCTTC 60.183 42.308 0.00 0.00 36.02 3.46
2891 6969 4.425520 CTTCGAACTACAAGGAGATCCAC 58.574 47.826 0.92 0.00 38.89 4.02
2903 6981 1.075450 GATCCACCCCGACTACCCT 60.075 63.158 0.00 0.00 0.00 4.34
2914 6992 0.739561 GACTACCCTGAGGCAGTACG 59.260 60.000 4.23 0.00 40.10 3.67
2917 6995 1.028330 TACCCTGAGGCAGTACGTCG 61.028 60.000 0.00 0.00 35.89 5.12
2918 6996 2.490217 CCTGAGGCAGTACGTCGG 59.510 66.667 0.00 0.00 38.93 4.79
2919 6997 2.490217 CTGAGGCAGTACGTCGGG 59.510 66.667 0.00 0.00 36.16 5.14
2920 6998 2.282674 TGAGGCAGTACGTCGGGT 60.283 61.111 0.00 0.00 35.89 5.28
2921 6999 2.181021 GAGGCAGTACGTCGGGTG 59.819 66.667 0.00 0.00 0.00 4.61
2942 7201 3.686241 TGCAGAGCAATCAACTGACATAC 59.314 43.478 0.00 0.00 34.76 2.39
2943 7202 3.686241 GCAGAGCAATCAACTGACATACA 59.314 43.478 0.00 0.00 34.07 2.29
2987 7246 3.395639 CATGCTGTTGGTTGCAAGAAAT 58.604 40.909 0.00 0.00 42.74 2.17
3042 7301 8.671987 ATCTCTGGTTAATACTGTATATGGCT 57.328 34.615 0.00 0.00 0.00 4.75
3070 7329 3.287222 TGTGTTACTTTGCTTCCAGCTT 58.713 40.909 0.00 0.00 42.97 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.912056 AGATAACAATACATGGAATCATCGG 57.088 36.000 0.00 0.00 30.64 4.18
2 3 9.071276 ACCAAGATAACAATACATGGAATCATC 57.929 33.333 0.00 0.00 30.64 2.92
4 5 9.337396 GTACCAAGATAACAATACATGGAATCA 57.663 33.333 0.00 0.00 30.64 2.57
5 6 9.337396 TGTACCAAGATAACAATACATGGAATC 57.663 33.333 0.00 0.00 0.00 2.52
21 22 9.219603 CATCGGTTTCAATATATGTACCAAGAT 57.780 33.333 0.00 0.00 35.74 2.40
22 23 8.208224 ACATCGGTTTCAATATATGTACCAAGA 58.792 33.333 0.00 0.00 35.74 3.02
23 24 8.378172 ACATCGGTTTCAATATATGTACCAAG 57.622 34.615 0.00 0.00 35.74 3.61
24 25 9.263538 GTACATCGGTTTCAATATATGTACCAA 57.736 33.333 10.76 0.00 41.57 3.67
25 26 8.644216 AGTACATCGGTTTCAATATATGTACCA 58.356 33.333 15.90 0.00 45.41 3.25
26 27 9.485206 AAGTACATCGGTTTCAATATATGTACC 57.515 33.333 15.90 8.47 45.41 3.34
29 30 9.261180 CTGAAGTACATCGGTTTCAATATATGT 57.739 33.333 0.00 0.00 0.00 2.29
30 31 8.223769 GCTGAAGTACATCGGTTTCAATATATG 58.776 37.037 8.61 0.00 0.00 1.78
31 32 7.387948 GGCTGAAGTACATCGGTTTCAATATAT 59.612 37.037 8.61 0.00 0.00 0.86
32 33 6.704493 GGCTGAAGTACATCGGTTTCAATATA 59.296 38.462 8.61 0.00 0.00 0.86
33 34 5.527582 GGCTGAAGTACATCGGTTTCAATAT 59.472 40.000 8.61 0.00 0.00 1.28
34 35 4.873827 GGCTGAAGTACATCGGTTTCAATA 59.126 41.667 8.61 0.00 0.00 1.90
35 36 3.689649 GGCTGAAGTACATCGGTTTCAAT 59.310 43.478 8.61 0.00 0.00 2.57
36 37 3.071479 GGCTGAAGTACATCGGTTTCAA 58.929 45.455 8.61 0.00 0.00 2.69
37 38 2.301870 AGGCTGAAGTACATCGGTTTCA 59.698 45.455 8.61 1.41 0.00 2.69
38 39 2.973945 AGGCTGAAGTACATCGGTTTC 58.026 47.619 8.61 0.00 0.00 2.78
39 40 4.755266 ATAGGCTGAAGTACATCGGTTT 57.245 40.909 8.61 0.76 0.00 3.27
40 41 4.755266 AATAGGCTGAAGTACATCGGTT 57.245 40.909 8.61 1.08 0.00 4.44
41 42 4.894114 ACTAATAGGCTGAAGTACATCGGT 59.106 41.667 8.61 0.00 0.00 4.69
42 43 5.223382 CACTAATAGGCTGAAGTACATCGG 58.777 45.833 2.47 2.47 0.00 4.18
43 44 4.681942 GCACTAATAGGCTGAAGTACATCG 59.318 45.833 0.00 0.00 0.00 3.84
44 45 4.991687 GGCACTAATAGGCTGAAGTACATC 59.008 45.833 0.00 0.00 0.00 3.06
45 46 4.501571 CGGCACTAATAGGCTGAAGTACAT 60.502 45.833 0.00 0.00 38.70 2.29
46 47 3.181479 CGGCACTAATAGGCTGAAGTACA 60.181 47.826 0.00 0.00 38.70 2.90
47 48 3.067742 TCGGCACTAATAGGCTGAAGTAC 59.932 47.826 0.00 0.00 42.12 2.73
48 49 3.293337 TCGGCACTAATAGGCTGAAGTA 58.707 45.455 0.00 0.00 42.12 2.24
49 50 2.108168 TCGGCACTAATAGGCTGAAGT 58.892 47.619 0.00 0.00 42.12 3.01
50 51 2.890808 TCGGCACTAATAGGCTGAAG 57.109 50.000 0.00 0.00 42.12 3.02
52 53 1.202533 GCTTCGGCACTAATAGGCTGA 60.203 52.381 0.00 7.78 43.29 4.26
53 54 1.202580 AGCTTCGGCACTAATAGGCTG 60.203 52.381 0.00 4.01 44.74 4.85
54 55 1.123928 AGCTTCGGCACTAATAGGCT 58.876 50.000 0.00 0.00 44.74 4.58
55 56 1.221414 CAGCTTCGGCACTAATAGGC 58.779 55.000 0.00 0.00 44.74 3.93
56 57 1.541233 CCCAGCTTCGGCACTAATAGG 60.541 57.143 0.00 0.00 44.74 2.57
57 58 1.139058 ACCCAGCTTCGGCACTAATAG 59.861 52.381 0.00 0.00 44.74 1.73
58 59 1.200519 ACCCAGCTTCGGCACTAATA 58.799 50.000 0.00 0.00 44.74 0.98
59 60 1.134491 GTACCCAGCTTCGGCACTAAT 60.134 52.381 0.00 0.00 44.74 1.73
60 61 0.248289 GTACCCAGCTTCGGCACTAA 59.752 55.000 0.00 0.00 44.74 2.24
61 62 0.613853 AGTACCCAGCTTCGGCACTA 60.614 55.000 1.19 0.00 44.74 2.74
62 63 1.481056 AAGTACCCAGCTTCGGCACT 61.481 55.000 0.00 0.00 44.74 4.40
63 64 0.248289 TAAGTACCCAGCTTCGGCAC 59.752 55.000 0.00 0.00 44.74 5.01
64 65 0.248289 GTAAGTACCCAGCTTCGGCA 59.752 55.000 0.00 0.00 44.74 5.69
65 66 0.461516 GGTAAGTACCCAGCTTCGGC 60.462 60.000 0.00 0.00 40.53 5.54
66 67 0.899720 TGGTAAGTACCCAGCTTCGG 59.100 55.000 5.05 0.00 45.87 4.30
67 68 2.754946 TTGGTAAGTACCCAGCTTCG 57.245 50.000 5.05 0.00 45.87 3.79
68 69 6.459710 GCATATTTTGGTAAGTACCCAGCTTC 60.460 42.308 5.05 0.00 45.87 3.86
69 70 5.359860 GCATATTTTGGTAAGTACCCAGCTT 59.640 40.000 5.05 0.00 45.87 3.74
70 71 4.887655 GCATATTTTGGTAAGTACCCAGCT 59.112 41.667 5.05 0.00 45.87 4.24
71 72 4.642885 TGCATATTTTGGTAAGTACCCAGC 59.357 41.667 5.05 0.49 45.87 4.85
72 73 6.545666 TCATGCATATTTTGGTAAGTACCCAG 59.454 38.462 0.00 0.00 45.87 4.45
73 74 6.427441 TCATGCATATTTTGGTAAGTACCCA 58.573 36.000 0.00 0.00 45.87 4.51
74 75 6.952773 TCATGCATATTTTGGTAAGTACCC 57.047 37.500 0.00 0.00 45.87 3.69
75 76 8.076178 GTGATCATGCATATTTTGGTAAGTACC 58.924 37.037 0.00 0.17 46.62 3.34
76 77 8.620416 TGTGATCATGCATATTTTGGTAAGTAC 58.380 33.333 0.00 0.00 0.00 2.73
77 78 8.744568 TGTGATCATGCATATTTTGGTAAGTA 57.255 30.769 0.00 0.00 0.00 2.24
78 79 7.643569 TGTGATCATGCATATTTTGGTAAGT 57.356 32.000 0.00 0.00 0.00 2.24
79 80 8.929827 TTTGTGATCATGCATATTTTGGTAAG 57.070 30.769 0.00 0.00 0.00 2.34
82 83 7.654520 GCTATTTGTGATCATGCATATTTTGGT 59.345 33.333 0.00 0.00 0.00 3.67
83 84 7.870954 AGCTATTTGTGATCATGCATATTTTGG 59.129 33.333 0.00 0.00 0.00 3.28
84 85 8.699749 CAGCTATTTGTGATCATGCATATTTTG 58.300 33.333 0.00 0.00 0.00 2.44
85 86 7.384115 GCAGCTATTTGTGATCATGCATATTTT 59.616 33.333 0.00 0.00 32.79 1.82
86 87 6.866770 GCAGCTATTTGTGATCATGCATATTT 59.133 34.615 0.00 0.00 32.79 1.40
87 88 6.208797 AGCAGCTATTTGTGATCATGCATATT 59.791 34.615 14.23 0.00 34.93 1.28
88 89 5.710567 AGCAGCTATTTGTGATCATGCATAT 59.289 36.000 14.23 5.72 34.93 1.78
89 90 5.067954 AGCAGCTATTTGTGATCATGCATA 58.932 37.500 14.23 4.18 34.93 3.14
90 91 3.889538 AGCAGCTATTTGTGATCATGCAT 59.110 39.130 14.23 0.00 34.93 3.96
91 92 3.284617 AGCAGCTATTTGTGATCATGCA 58.715 40.909 14.23 0.00 34.93 3.96
92 93 3.984508 AGCAGCTATTTGTGATCATGC 57.015 42.857 0.00 1.70 0.00 4.06
93 94 4.818005 TGGTAGCAGCTATTTGTGATCATG 59.182 41.667 5.14 0.00 0.00 3.07
94 95 5.039920 TGGTAGCAGCTATTTGTGATCAT 57.960 39.130 5.14 0.00 0.00 2.45
95 96 4.486125 TGGTAGCAGCTATTTGTGATCA 57.514 40.909 5.14 0.00 0.00 2.92
96 97 5.818136 TTTGGTAGCAGCTATTTGTGATC 57.182 39.130 5.14 0.00 0.00 2.92
97 98 6.780457 ATTTTGGTAGCAGCTATTTGTGAT 57.220 33.333 5.14 0.00 0.00 3.06
98 99 7.339212 ACATATTTTGGTAGCAGCTATTTGTGA 59.661 33.333 5.14 0.00 0.00 3.58
99 100 7.483307 ACATATTTTGGTAGCAGCTATTTGTG 58.517 34.615 5.14 0.63 0.00 3.33
100 101 7.645058 ACATATTTTGGTAGCAGCTATTTGT 57.355 32.000 5.14 0.00 0.00 2.83
101 102 8.810427 CAAACATATTTTGGTAGCAGCTATTTG 58.190 33.333 5.14 4.62 0.00 2.32
102 103 8.531146 ACAAACATATTTTGGTAGCAGCTATTT 58.469 29.630 5.14 0.00 33.92 1.40
103 104 8.066612 ACAAACATATTTTGGTAGCAGCTATT 57.933 30.769 5.14 0.00 33.92 1.73
104 105 7.645058 ACAAACATATTTTGGTAGCAGCTAT 57.355 32.000 5.14 0.00 33.92 2.97
105 106 8.568676 TTACAAACATATTTTGGTAGCAGCTA 57.431 30.769 0.00 0.00 33.92 3.32
106 107 5.982890 ACAAACATATTTTGGTAGCAGCT 57.017 34.783 0.00 0.00 33.92 4.24
107 108 9.796120 TTATTACAAACATATTTTGGTAGCAGC 57.204 29.630 12.13 0.00 33.92 5.25
127 128 9.615295 TGAACGGAAAAAGTAATGCTTTATTAC 57.385 29.630 0.00 0.00 45.91 1.89
129 130 9.139174 CATGAACGGAAAAAGTAATGCTTTATT 57.861 29.630 0.00 0.00 45.91 1.40
130 131 8.303876 ACATGAACGGAAAAAGTAATGCTTTAT 58.696 29.630 0.00 0.00 45.91 1.40
131 132 7.653647 ACATGAACGGAAAAAGTAATGCTTTA 58.346 30.769 0.00 0.00 45.91 1.85
133 134 6.084326 ACATGAACGGAAAAAGTAATGCTT 57.916 33.333 0.00 0.00 39.52 3.91
134 135 5.705609 ACATGAACGGAAAAAGTAATGCT 57.294 34.783 0.00 0.00 0.00 3.79
135 136 6.763303 AAACATGAACGGAAAAAGTAATGC 57.237 33.333 0.00 0.00 0.00 3.56
139 140 9.804758 ACAAATTAAACATGAACGGAAAAAGTA 57.195 25.926 0.00 0.00 0.00 2.24
140 141 8.599774 CACAAATTAAACATGAACGGAAAAAGT 58.400 29.630 0.00 0.00 0.00 2.66
141 142 8.061268 CCACAAATTAAACATGAACGGAAAAAG 58.939 33.333 0.00 0.00 0.00 2.27
142 143 7.011482 CCCACAAATTAAACATGAACGGAAAAA 59.989 33.333 0.00 0.00 0.00 1.94
143 144 6.480320 CCCACAAATTAAACATGAACGGAAAA 59.520 34.615 0.00 0.00 0.00 2.29
144 145 5.986135 CCCACAAATTAAACATGAACGGAAA 59.014 36.000 0.00 0.00 0.00 3.13
145 146 5.069251 ACCCACAAATTAAACATGAACGGAA 59.931 36.000 0.00 0.00 0.00 4.30
146 147 4.585162 ACCCACAAATTAAACATGAACGGA 59.415 37.500 0.00 0.00 0.00 4.69
147 148 4.683781 CACCCACAAATTAAACATGAACGG 59.316 41.667 0.00 0.00 0.00 4.44
148 149 5.174761 CACACCCACAAATTAAACATGAACG 59.825 40.000 0.00 0.00 0.00 3.95
149 150 6.045955 ACACACCCACAAATTAAACATGAAC 58.954 36.000 0.00 0.00 0.00 3.18
150 151 6.097554 AGACACACCCACAAATTAAACATGAA 59.902 34.615 0.00 0.00 0.00 2.57
151 152 5.596361 AGACACACCCACAAATTAAACATGA 59.404 36.000 0.00 0.00 0.00 3.07
152 153 5.841810 AGACACACCCACAAATTAAACATG 58.158 37.500 0.00 0.00 0.00 3.21
153 154 7.001674 TCTAGACACACCCACAAATTAAACAT 58.998 34.615 0.00 0.00 0.00 2.71
154 155 6.358178 TCTAGACACACCCACAAATTAAACA 58.642 36.000 0.00 0.00 0.00 2.83
155 156 6.567891 GCTCTAGACACACCCACAAATTAAAC 60.568 42.308 0.00 0.00 0.00 2.01
156 157 5.472137 GCTCTAGACACACCCACAAATTAAA 59.528 40.000 0.00 0.00 0.00 1.52
157 158 5.001232 GCTCTAGACACACCCACAAATTAA 58.999 41.667 0.00 0.00 0.00 1.40
158 159 4.041075 TGCTCTAGACACACCCACAAATTA 59.959 41.667 0.00 0.00 0.00 1.40
159 160 3.181445 TGCTCTAGACACACCCACAAATT 60.181 43.478 0.00 0.00 0.00 1.82
160 161 2.371841 TGCTCTAGACACACCCACAAAT 59.628 45.455 0.00 0.00 0.00 2.32
161 162 1.765904 TGCTCTAGACACACCCACAAA 59.234 47.619 0.00 0.00 0.00 2.83
162 163 1.070134 GTGCTCTAGACACACCCACAA 59.930 52.381 16.02 0.00 37.96 3.33
163 164 0.679505 GTGCTCTAGACACACCCACA 59.320 55.000 16.02 0.00 37.96 4.17
164 165 0.679505 TGTGCTCTAGACACACCCAC 59.320 55.000 18.35 7.57 42.88 4.61
165 166 3.141409 TGTGCTCTAGACACACCCA 57.859 52.632 18.35 2.12 42.88 4.51
203 204 9.534565 GCTTGATTCACTCACTTAGATGTATAA 57.465 33.333 0.00 0.00 32.17 0.98
204 205 8.695456 TGCTTGATTCACTCACTTAGATGTATA 58.305 33.333 0.00 0.00 32.17 1.47
205 206 7.559486 TGCTTGATTCACTCACTTAGATGTAT 58.441 34.615 0.00 0.00 32.17 2.29
206 207 6.935167 TGCTTGATTCACTCACTTAGATGTA 58.065 36.000 0.00 0.00 32.17 2.29
207 208 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
208 209 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
209 210 9.107177 CTTTATGCTTGATTCACTCACTTAGAT 57.893 33.333 0.00 0.00 32.17 1.98
210 211 8.314021 TCTTTATGCTTGATTCACTCACTTAGA 58.686 33.333 0.00 0.00 32.17 2.10
211 212 8.484641 TCTTTATGCTTGATTCACTCACTTAG 57.515 34.615 0.00 0.00 32.17 2.18
212 213 8.314021 TCTCTTTATGCTTGATTCACTCACTTA 58.686 33.333 0.00 0.00 32.17 2.24
213 214 7.164122 TCTCTTTATGCTTGATTCACTCACTT 58.836 34.615 0.00 0.00 32.17 3.16
214 215 6.705302 TCTCTTTATGCTTGATTCACTCACT 58.295 36.000 0.00 0.00 32.17 3.41
215 216 6.974932 TCTCTTTATGCTTGATTCACTCAC 57.025 37.500 0.00 0.00 32.17 3.51
216 217 7.984422 TTTCTCTTTATGCTTGATTCACTCA 57.016 32.000 0.00 0.00 0.00 3.41
217 218 9.339492 CTTTTTCTCTTTATGCTTGATTCACTC 57.661 33.333 0.00 0.00 0.00 3.51
218 219 9.071276 TCTTTTTCTCTTTATGCTTGATTCACT 57.929 29.630 0.00 0.00 0.00 3.41
219 220 9.683069 TTCTTTTTCTCTTTATGCTTGATTCAC 57.317 29.630 0.00 0.00 0.00 3.18
265 266 9.986833 CATTGATCTTACATTGAAATTCGTGTA 57.013 29.630 6.86 6.86 0.00 2.90
266 267 8.729756 TCATTGATCTTACATTGAAATTCGTGT 58.270 29.630 8.48 8.48 30.67 4.49
267 268 9.003112 GTCATTGATCTTACATTGAAATTCGTG 57.997 33.333 0.00 0.00 33.86 4.35
268 269 8.729756 TGTCATTGATCTTACATTGAAATTCGT 58.270 29.630 0.00 0.00 33.86 3.85
269 270 9.726232 ATGTCATTGATCTTACATTGAAATTCG 57.274 29.630 0.00 0.00 33.86 3.34
283 284 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
284 285 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
285 286 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
286 287 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
287 288 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
288 289 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
289 290 9.955102 ATATTGCACATCTAAGTCATATGTCAT 57.045 29.630 1.90 0.00 31.60 3.06
290 291 9.783081 AATATTGCACATCTAAGTCATATGTCA 57.217 29.630 1.90 0.00 31.60 3.58
297 298 9.612066 TGTCATAAATATTGCACATCTAAGTCA 57.388 29.630 0.00 0.00 0.00 3.41
298 299 9.869844 GTGTCATAAATATTGCACATCTAAGTC 57.130 33.333 0.00 0.00 0.00 3.01
299 300 9.394767 TGTGTCATAAATATTGCACATCTAAGT 57.605 29.630 0.00 0.00 32.79 2.24
305 306 9.783081 TCTAGATGTGTCATAAATATTGCACAT 57.217 29.630 15.93 15.93 46.19 3.21
306 307 9.783081 ATCTAGATGTGTCATAAATATTGCACA 57.217 29.630 3.89 0.00 40.42 4.57
367 368 8.527810 ACCTTGTGACATCAAGTTTTAGAAAAA 58.472 29.630 13.29 0.00 42.01 1.94
413 414 0.745845 GCAATGCGAGGAGGTGTCAT 60.746 55.000 0.00 0.00 0.00 3.06
466 467 4.869297 CCTTGTTTTTGAACACTCATTGCA 59.131 37.500 0.00 0.00 31.49 4.08
473 474 4.494484 GAAGCACCTTGTTTTTGAACACT 58.506 39.130 0.00 0.00 31.49 3.55
517 518 2.030893 TCGTCGGCGTTTTCTTCTCTTA 60.031 45.455 10.18 0.00 39.49 2.10
540 541 1.197721 CACACAACCTTCTTCCGATGC 59.802 52.381 0.00 0.00 0.00 3.91
579 580 9.503427 GTCATGACTAAAATATTGGTAAAGTGC 57.497 33.333 18.83 0.00 29.37 4.40
775 963 5.172934 AGCGTCAATTTCTTCGGTTGTATA 58.827 37.500 0.00 0.00 0.00 1.47
776 964 4.000988 AGCGTCAATTTCTTCGGTTGTAT 58.999 39.130 0.00 0.00 0.00 2.29
777 965 3.395639 AGCGTCAATTTCTTCGGTTGTA 58.604 40.909 0.00 0.00 0.00 2.41
789 977 3.565482 ACACACATCTCAAAGCGTCAATT 59.435 39.130 0.00 0.00 0.00 2.32
947 4741 6.080406 GTCGATCCTTTGAATTCAGTTTGTC 58.920 40.000 8.41 5.41 0.00 3.18
1318 5176 2.496341 CGGCTCCTCGATGAAGCA 59.504 61.111 13.67 0.00 0.00 3.91
1683 5544 2.430367 GGGTCGGAGTGCTTGGTT 59.570 61.111 0.00 0.00 0.00 3.67
1837 5713 1.597854 CGTTGGACAGGAGCTGCAA 60.598 57.895 8.35 0.00 34.37 4.08
2124 6029 2.266816 GAGGGAATCCGAACACCCCC 62.267 65.000 0.00 0.00 42.97 5.40
2125 6030 1.223763 GAGGGAATCCGAACACCCC 59.776 63.158 0.00 0.00 42.97 4.95
2126 6031 1.223763 GGAGGGAATCCGAACACCC 59.776 63.158 0.00 0.00 38.67 4.61
2127 6032 4.957164 GGAGGGAATCCGAACACC 57.043 61.111 0.00 0.00 38.67 4.16
2144 6049 4.200283 GGAGCTGAGTCCGGAGCG 62.200 72.222 3.06 0.00 40.34 5.03
2176 6081 3.053896 ACCGTTTTAGCCCGCAGC 61.054 61.111 0.00 0.00 44.25 5.25
2177 6082 2.686816 CCACCGTTTTAGCCCGCAG 61.687 63.158 0.00 0.00 0.00 5.18
2178 6083 2.670251 CCACCGTTTTAGCCCGCA 60.670 61.111 0.00 0.00 0.00 5.69
2179 6084 1.310216 ATTCCACCGTTTTAGCCCGC 61.310 55.000 0.00 0.00 0.00 6.13
2180 6085 1.135517 CAATTCCACCGTTTTAGCCCG 60.136 52.381 0.00 0.00 0.00 6.13
2181 6086 1.203758 CCAATTCCACCGTTTTAGCCC 59.796 52.381 0.00 0.00 0.00 5.19
2182 6087 2.164338 TCCAATTCCACCGTTTTAGCC 58.836 47.619 0.00 0.00 0.00 3.93
2183 6088 3.926821 TTCCAATTCCACCGTTTTAGC 57.073 42.857 0.00 0.00 0.00 3.09
2184 6089 5.447624 ACTTTCCAATTCCACCGTTTTAG 57.552 39.130 0.00 0.00 0.00 1.85
2185 6090 5.474189 CCTACTTTCCAATTCCACCGTTTTA 59.526 40.000 0.00 0.00 0.00 1.52
2186 6091 4.279922 CCTACTTTCCAATTCCACCGTTTT 59.720 41.667 0.00 0.00 0.00 2.43
2187 6092 3.824443 CCTACTTTCCAATTCCACCGTTT 59.176 43.478 0.00 0.00 0.00 3.60
2188 6093 3.418047 CCTACTTTCCAATTCCACCGTT 58.582 45.455 0.00 0.00 0.00 4.44
2189 6094 2.878526 GCCTACTTTCCAATTCCACCGT 60.879 50.000 0.00 0.00 0.00 4.83
2190 6095 1.743394 GCCTACTTTCCAATTCCACCG 59.257 52.381 0.00 0.00 0.00 4.94
2191 6096 2.492088 GTGCCTACTTTCCAATTCCACC 59.508 50.000 0.00 0.00 0.00 4.61
2192 6097 3.421844 AGTGCCTACTTTCCAATTCCAC 58.578 45.455 0.00 0.00 31.66 4.02
2193 6098 3.561313 GGAGTGCCTACTTTCCAATTCCA 60.561 47.826 0.00 0.00 37.25 3.53
2194 6099 3.017442 GGAGTGCCTACTTTCCAATTCC 58.983 50.000 0.00 0.00 37.25 3.01
2195 6100 3.956744 AGGAGTGCCTACTTTCCAATTC 58.043 45.455 0.00 0.00 44.74 2.17
2204 6109 7.529560 AATTACAGAATTTGAGGAGTGCCTACT 60.530 37.037 0.00 0.00 36.92 2.57
2205 6110 6.599638 AATTACAGAATTTGAGGAGTGCCTAC 59.400 38.462 0.00 0.00 36.92 3.18
2206 6111 6.721318 AATTACAGAATTTGAGGAGTGCCTA 58.279 36.000 0.00 0.00 36.92 3.93
2207 6112 5.574188 AATTACAGAATTTGAGGAGTGCCT 58.426 37.500 0.00 0.00 38.58 4.75
2208 6113 5.904362 AATTACAGAATTTGAGGAGTGCC 57.096 39.130 0.00 0.00 30.77 5.01
2209 6114 6.089954 GCAAAATTACAGAATTTGAGGAGTGC 59.910 38.462 1.95 0.00 43.10 4.40
2210 6115 6.306356 CGCAAAATTACAGAATTTGAGGAGTG 59.694 38.462 1.95 0.00 43.10 3.51
2211 6116 6.381801 CGCAAAATTACAGAATTTGAGGAGT 58.618 36.000 1.95 0.00 43.10 3.85
2212 6117 5.801947 CCGCAAAATTACAGAATTTGAGGAG 59.198 40.000 12.87 1.29 43.10 3.69
2213 6118 5.475220 TCCGCAAAATTACAGAATTTGAGGA 59.525 36.000 15.70 15.70 43.10 3.71
2214 6119 5.708948 TCCGCAAAATTACAGAATTTGAGG 58.291 37.500 12.21 12.21 43.10 3.86
2215 6120 5.287035 GCTCCGCAAAATTACAGAATTTGAG 59.713 40.000 1.95 0.00 43.10 3.02
2216 6121 5.048083 AGCTCCGCAAAATTACAGAATTTGA 60.048 36.000 1.95 0.00 43.10 2.69
2217 6122 5.061311 CAGCTCCGCAAAATTACAGAATTTG 59.939 40.000 0.00 0.00 43.10 2.32
2218 6123 5.163513 CAGCTCCGCAAAATTACAGAATTT 58.836 37.500 0.00 0.00 45.30 1.82
2219 6124 4.380867 CCAGCTCCGCAAAATTACAGAATT 60.381 41.667 0.00 0.00 36.82 2.17
2220 6125 3.129287 CCAGCTCCGCAAAATTACAGAAT 59.871 43.478 0.00 0.00 0.00 2.40
2221 6126 2.487762 CCAGCTCCGCAAAATTACAGAA 59.512 45.455 0.00 0.00 0.00 3.02
2222 6127 2.083774 CCAGCTCCGCAAAATTACAGA 58.916 47.619 0.00 0.00 0.00 3.41
2223 6128 1.812571 ACCAGCTCCGCAAAATTACAG 59.187 47.619 0.00 0.00 0.00 2.74
2224 6129 1.539388 CACCAGCTCCGCAAAATTACA 59.461 47.619 0.00 0.00 0.00 2.41
2225 6130 1.135402 CCACCAGCTCCGCAAAATTAC 60.135 52.381 0.00 0.00 0.00 1.89
2226 6131 1.173043 CCACCAGCTCCGCAAAATTA 58.827 50.000 0.00 0.00 0.00 1.40
2227 6132 0.539438 TCCACCAGCTCCGCAAAATT 60.539 50.000 0.00 0.00 0.00 1.82
2228 6133 0.962356 CTCCACCAGCTCCGCAAAAT 60.962 55.000 0.00 0.00 0.00 1.82
2229 6134 1.600636 CTCCACCAGCTCCGCAAAA 60.601 57.895 0.00 0.00 0.00 2.44
2230 6135 2.032528 CTCCACCAGCTCCGCAAA 59.967 61.111 0.00 0.00 0.00 3.68
2231 6136 2.922503 TCTCCACCAGCTCCGCAA 60.923 61.111 0.00 0.00 0.00 4.85
2232 6137 3.385384 CTCTCCACCAGCTCCGCA 61.385 66.667 0.00 0.00 0.00 5.69
2233 6138 4.828925 GCTCTCCACCAGCTCCGC 62.829 72.222 0.00 0.00 33.75 5.54
2234 6139 4.154347 GGCTCTCCACCAGCTCCG 62.154 72.222 0.00 0.00 37.05 4.63
2235 6140 4.154347 CGGCTCTCCACCAGCTCC 62.154 72.222 0.00 0.00 37.05 4.70
2236 6141 2.650116 TTCGGCTCTCCACCAGCTC 61.650 63.158 0.00 0.00 37.05 4.09
2237 6142 2.604686 TTCGGCTCTCCACCAGCT 60.605 61.111 0.00 0.00 37.05 4.24
2238 6143 2.435059 GTTCGGCTCTCCACCAGC 60.435 66.667 0.00 0.00 36.02 4.85
2239 6144 1.079543 CTGTTCGGCTCTCCACCAG 60.080 63.158 0.00 0.00 0.00 4.00
2240 6145 2.583441 CCTGTTCGGCTCTCCACCA 61.583 63.158 0.00 0.00 0.00 4.17
2241 6146 2.266055 CCTGTTCGGCTCTCCACC 59.734 66.667 0.00 0.00 0.00 4.61
2250 6155 1.834188 AACAATAAGGGCCTGTTCGG 58.166 50.000 6.92 0.00 0.00 4.30
2251 6156 2.094752 CCAAACAATAAGGGCCTGTTCG 60.095 50.000 6.92 0.00 32.21 3.95
2252 6157 2.233676 CCCAAACAATAAGGGCCTGTTC 59.766 50.000 6.92 0.00 35.44 3.18
2253 6158 2.256306 CCCAAACAATAAGGGCCTGTT 58.744 47.619 6.92 4.66 35.44 3.16
2254 6159 1.937191 CCCAAACAATAAGGGCCTGT 58.063 50.000 6.92 0.00 35.44 4.00
2259 6164 4.222588 TGATTCAAGCCCAAACAATAAGGG 59.777 41.667 0.00 0.00 45.68 3.95
2260 6165 5.404466 TGATTCAAGCCCAAACAATAAGG 57.596 39.130 0.00 0.00 0.00 2.69
2261 6166 9.683069 GTATATGATTCAAGCCCAAACAATAAG 57.317 33.333 0.00 0.00 0.00 1.73
2262 6167 8.637986 GGTATATGATTCAAGCCCAAACAATAA 58.362 33.333 0.00 0.00 0.00 1.40
2263 6168 7.782168 TGGTATATGATTCAAGCCCAAACAATA 59.218 33.333 0.00 0.00 0.00 1.90
2264 6169 6.610830 TGGTATATGATTCAAGCCCAAACAAT 59.389 34.615 0.00 0.00 0.00 2.71
2265 6170 5.954752 TGGTATATGATTCAAGCCCAAACAA 59.045 36.000 0.00 0.00 0.00 2.83
2270 6175 5.606749 AGTACTGGTATATGATTCAAGCCCA 59.393 40.000 0.00 0.00 0.00 5.36
2274 6179 7.453126 AGAGGGAGTACTGGTATATGATTCAAG 59.547 40.741 0.00 0.00 0.00 3.02
2286 6191 6.758806 TTTCTTTAAAGAGGGAGTACTGGT 57.241 37.500 17.05 0.00 36.22 4.00
2294 6199 9.106070 GCGTTTAGATATTTCTTTAAAGAGGGA 57.894 33.333 17.05 8.79 36.22 4.20
2295 6200 9.110502 AGCGTTTAGATATTTCTTTAAAGAGGG 57.889 33.333 17.05 0.00 36.22 4.30
2315 6220 9.028185 CCGTAAAGAAATACTATAAGAGCGTTT 57.972 33.333 0.00 0.00 0.00 3.60
2316 6221 8.408601 TCCGTAAAGAAATACTATAAGAGCGTT 58.591 33.333 0.00 0.00 0.00 4.84
2317 6222 7.934457 TCCGTAAAGAAATACTATAAGAGCGT 58.066 34.615 0.00 0.00 0.00 5.07
2318 6223 7.537991 CCTCCGTAAAGAAATACTATAAGAGCG 59.462 40.741 0.00 0.00 0.00 5.03
2319 6224 7.813627 CCCTCCGTAAAGAAATACTATAAGAGC 59.186 40.741 0.00 0.00 0.00 4.09
2320 6225 9.075678 TCCCTCCGTAAAGAAATACTATAAGAG 57.924 37.037 0.00 0.00 0.00 2.85
2321 6226 9.075678 CTCCCTCCGTAAAGAAATACTATAAGA 57.924 37.037 0.00 0.00 0.00 2.10
2322 6227 8.858094 ACTCCCTCCGTAAAGAAATACTATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2323 6228 8.773033 ACTCCCTCCGTAAAGAAATACTATAA 57.227 34.615 0.00 0.00 0.00 0.98
2324 6229 9.289782 GTACTCCCTCCGTAAAGAAATACTATA 57.710 37.037 0.00 0.00 0.00 1.31
2325 6230 7.781693 TGTACTCCCTCCGTAAAGAAATACTAT 59.218 37.037 0.00 0.00 0.00 2.12
2326 6231 7.118723 TGTACTCCCTCCGTAAAGAAATACTA 58.881 38.462 0.00 0.00 0.00 1.82
2327 6232 5.954150 TGTACTCCCTCCGTAAAGAAATACT 59.046 40.000 0.00 0.00 0.00 2.12
2328 6233 6.212888 TGTACTCCCTCCGTAAAGAAATAC 57.787 41.667 0.00 0.00 0.00 1.89
2329 6234 6.837568 AGATGTACTCCCTCCGTAAAGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
2330 6235 5.661759 AGATGTACTCCCTCCGTAAAGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
2331 6236 5.021458 AGATGTACTCCCTCCGTAAAGAAA 58.979 41.667 0.00 0.00 0.00 2.52
2332 6237 4.607239 AGATGTACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.00 0.00 2.52
2333 6238 4.246712 AGATGTACTCCCTCCGTAAAGA 57.753 45.455 0.00 0.00 0.00 2.52
2334 6239 5.507650 GCTAAGATGTACTCCCTCCGTAAAG 60.508 48.000 0.00 0.00 0.00 1.85
2335 6240 4.340381 GCTAAGATGTACTCCCTCCGTAAA 59.660 45.833 0.00 0.00 0.00 2.01
2336 6241 3.887716 GCTAAGATGTACTCCCTCCGTAA 59.112 47.826 0.00 0.00 0.00 3.18
2337 6242 3.117776 TGCTAAGATGTACTCCCTCCGTA 60.118 47.826 0.00 0.00 0.00 4.02
2338 6243 2.308690 GCTAAGATGTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
2339 6244 2.307768 TGCTAAGATGTACTCCCTCCG 58.692 52.381 0.00 0.00 0.00 4.63
2340 6245 3.491104 CGTTGCTAAGATGTACTCCCTCC 60.491 52.174 0.00 0.00 0.00 4.30
2341 6246 3.707793 CGTTGCTAAGATGTACTCCCTC 58.292 50.000 0.00 0.00 0.00 4.30
2342 6247 2.159085 GCGTTGCTAAGATGTACTCCCT 60.159 50.000 0.00 0.00 0.00 4.20
2343 6248 2.202566 GCGTTGCTAAGATGTACTCCC 58.797 52.381 0.00 0.00 0.00 4.30
2344 6249 2.888594 TGCGTTGCTAAGATGTACTCC 58.111 47.619 0.00 0.00 0.00 3.85
2345 6250 4.174009 TCTTGCGTTGCTAAGATGTACTC 58.826 43.478 0.00 0.00 0.00 2.59
2372 6277 3.689649 GGGAAGAGTACAACGATTGCATT 59.310 43.478 0.00 0.00 0.00 3.56
2381 6286 1.659098 CGCGATTGGGAAGAGTACAAC 59.341 52.381 0.00 0.00 0.00 3.32
2398 6303 1.735018 TCCACAAACCACAATATCGCG 59.265 47.619 0.00 0.00 0.00 5.87
2414 6319 3.507233 TCTGCATTTCCAACTGAATCCAC 59.493 43.478 0.00 0.00 31.67 4.02
2415 6320 3.765381 TCTGCATTTCCAACTGAATCCA 58.235 40.909 0.00 0.00 31.67 3.41
2417 6322 7.325660 TCTTATCTGCATTTCCAACTGAATC 57.674 36.000 0.00 0.00 31.67 2.52
2418 6323 7.893124 ATCTTATCTGCATTTCCAACTGAAT 57.107 32.000 0.00 0.00 31.67 2.57
2420 6325 7.707624 AAATCTTATCTGCATTTCCAACTGA 57.292 32.000 0.00 0.00 0.00 3.41
2425 6330 8.641541 GGGAATTAAATCTTATCTGCATTTCCA 58.358 33.333 0.00 0.00 31.53 3.53
2426 6331 8.864087 AGGGAATTAAATCTTATCTGCATTTCC 58.136 33.333 0.00 0.00 0.00 3.13
2488 6393 9.585099 GCAATACATGACTTCCATTTATCAAAA 57.415 29.630 0.00 0.00 29.38 2.44
2489 6394 7.914871 CGCAATACATGACTTCCATTTATCAAA 59.085 33.333 0.00 0.00 29.38 2.69
2490 6395 7.416817 CGCAATACATGACTTCCATTTATCAA 58.583 34.615 0.00 0.00 29.38 2.57
2491 6396 6.017192 CCGCAATACATGACTTCCATTTATCA 60.017 38.462 0.00 0.00 29.38 2.15
2492 6397 6.204688 TCCGCAATACATGACTTCCATTTATC 59.795 38.462 0.00 0.00 29.38 1.75
2493 6398 6.061441 TCCGCAATACATGACTTCCATTTAT 58.939 36.000 0.00 0.00 31.36 1.40
2494 6399 5.432645 TCCGCAATACATGACTTCCATTTA 58.567 37.500 0.00 0.00 31.94 1.40
2495 6400 4.269183 TCCGCAATACATGACTTCCATTT 58.731 39.130 0.00 0.00 31.94 2.32
2496 6401 3.884895 TCCGCAATACATGACTTCCATT 58.115 40.909 0.00 0.00 31.94 3.16
2497 6402 3.558931 TCCGCAATACATGACTTCCAT 57.441 42.857 0.00 0.00 35.44 3.41
2498 6403 3.006940 GTTCCGCAATACATGACTTCCA 58.993 45.455 0.00 0.00 0.00 3.53
2499 6404 2.030457 CGTTCCGCAATACATGACTTCC 59.970 50.000 0.00 0.00 0.00 3.46
2500 6405 2.030457 CCGTTCCGCAATACATGACTTC 59.970 50.000 0.00 0.00 0.00 3.01
2501 6406 2.006888 CCGTTCCGCAATACATGACTT 58.993 47.619 0.00 0.00 0.00 3.01
2502 6407 1.206132 TCCGTTCCGCAATACATGACT 59.794 47.619 0.00 0.00 0.00 3.41
2503 6408 1.593006 CTCCGTTCCGCAATACATGAC 59.407 52.381 0.00 0.00 0.00 3.06
2504 6409 1.472552 CCTCCGTTCCGCAATACATGA 60.473 52.381 0.00 0.00 0.00 3.07
2505 6410 0.937304 CCTCCGTTCCGCAATACATG 59.063 55.000 0.00 0.00 0.00 3.21
2506 6411 0.179056 CCCTCCGTTCCGCAATACAT 60.179 55.000 0.00 0.00 0.00 2.29
2507 6412 1.219664 CCCTCCGTTCCGCAATACA 59.780 57.895 0.00 0.00 0.00 2.29
2508 6413 0.529992 CTCCCTCCGTTCCGCAATAC 60.530 60.000 0.00 0.00 0.00 1.89
2509 6414 0.974010 ACTCCCTCCGTTCCGCAATA 60.974 55.000 0.00 0.00 0.00 1.90
2510 6415 0.974010 TACTCCCTCCGTTCCGCAAT 60.974 55.000 0.00 0.00 0.00 3.56
2511 6416 1.601419 CTACTCCCTCCGTTCCGCAA 61.601 60.000 0.00 0.00 0.00 4.85
2512 6417 2.036098 TACTCCCTCCGTTCCGCA 59.964 61.111 0.00 0.00 0.00 5.69
2513 6418 1.602327 AACTACTCCCTCCGTTCCGC 61.602 60.000 0.00 0.00 0.00 5.54
2514 6419 0.893447 AAACTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
2515 6420 2.301009 TCAAAACTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
2516 6421 3.672767 TCAAAACTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
2517 6422 3.581332 TCATCAAAACTACTCCCTCCGTT 59.419 43.478 0.00 0.00 0.00 4.44
2518 6423 3.056035 GTCATCAAAACTACTCCCTCCGT 60.056 47.826 0.00 0.00 0.00 4.69
2519 6424 3.195825 AGTCATCAAAACTACTCCCTCCG 59.804 47.826 0.00 0.00 0.00 4.63
2520 6425 4.223032 TCAGTCATCAAAACTACTCCCTCC 59.777 45.833 0.00 0.00 0.00 4.30
2521 6426 5.407407 TCAGTCATCAAAACTACTCCCTC 57.593 43.478 0.00 0.00 0.00 4.30
2522 6427 6.380079 AATCAGTCATCAAAACTACTCCCT 57.620 37.500 0.00 0.00 0.00 4.20
2523 6428 6.539103 GGTAATCAGTCATCAAAACTACTCCC 59.461 42.308 0.00 0.00 0.00 4.30
2524 6429 7.103641 TGGTAATCAGTCATCAAAACTACTCC 58.896 38.462 0.00 0.00 0.00 3.85
2525 6430 8.547967 TTGGTAATCAGTCATCAAAACTACTC 57.452 34.615 0.00 0.00 0.00 2.59
2526 6431 8.784043 GTTTGGTAATCAGTCATCAAAACTACT 58.216 33.333 0.00 0.00 0.00 2.57
2527 6432 8.564574 TGTTTGGTAATCAGTCATCAAAACTAC 58.435 33.333 0.00 0.00 0.00 2.73
2528 6433 8.564574 GTGTTTGGTAATCAGTCATCAAAACTA 58.435 33.333 0.00 0.00 0.00 2.24
2529 6434 7.285401 AGTGTTTGGTAATCAGTCATCAAAACT 59.715 33.333 0.00 0.00 0.00 2.66
2530 6435 7.379529 CAGTGTTTGGTAATCAGTCATCAAAAC 59.620 37.037 0.00 0.00 0.00 2.43
2531 6436 7.424803 CAGTGTTTGGTAATCAGTCATCAAAA 58.575 34.615 0.00 0.00 0.00 2.44
2532 6437 6.016360 CCAGTGTTTGGTAATCAGTCATCAAA 60.016 38.462 0.00 0.00 42.41 2.69
2533 6438 5.473162 CCAGTGTTTGGTAATCAGTCATCAA 59.527 40.000 0.00 0.00 42.41 2.57
2534 6439 5.003160 CCAGTGTTTGGTAATCAGTCATCA 58.997 41.667 0.00 0.00 42.41 3.07
2535 6440 5.551760 CCAGTGTTTGGTAATCAGTCATC 57.448 43.478 0.00 0.00 42.41 2.92
2576 6481 3.003480 CGATTTCTTCAGGTCTGGTTCC 58.997 50.000 0.00 0.00 0.00 3.62
2577 6482 3.680458 GTCGATTTCTTCAGGTCTGGTTC 59.320 47.826 0.00 0.00 0.00 3.62
2582 6487 2.168496 TCCGTCGATTTCTTCAGGTCT 58.832 47.619 0.00 0.00 0.00 3.85
2612 6517 3.420893 CTTTTGTGGGAAGCACTATCCA 58.579 45.455 0.00 0.00 38.80 3.41
2613 6518 2.164422 GCTTTTGTGGGAAGCACTATCC 59.836 50.000 4.13 0.00 46.67 2.59
2658 6563 7.307989 CCATTTGGTTCACCGACAAGATATATC 60.308 40.741 4.42 4.42 39.43 1.63
2687 6596 2.640184 AGCTTACCCTTACAAATCGCC 58.360 47.619 0.00 0.00 0.00 5.54
2689 6598 4.201822 GCAGAAGCTTACCCTTACAAATCG 60.202 45.833 0.00 0.00 37.91 3.34
2692 6601 3.181438 TGGCAGAAGCTTACCCTTACAAA 60.181 43.478 0.00 0.00 41.70 2.83
2701 6610 6.447162 ACAAATTTAACTGGCAGAAGCTTAC 58.553 36.000 23.66 0.00 41.70 2.34
2766 6844 6.095300 TGCATTAGCTTACATTACACAAGCAT 59.905 34.615 8.12 0.00 45.63 3.79
2774 6852 6.618287 TGATGGTGCATTAGCTTACATTAC 57.382 37.500 0.00 0.00 42.74 1.89
2775 6853 7.040478 GGAATGATGGTGCATTAGCTTACATTA 60.040 37.037 0.00 0.00 42.74 1.90
2786 6864 1.412074 GGGAGGGAATGATGGTGCATT 60.412 52.381 0.00 0.00 40.96 3.56
2796 6874 2.158755 GGAGTACATGTGGGAGGGAATG 60.159 54.545 9.11 0.00 0.00 2.67
2800 6878 0.833287 CTGGAGTACATGTGGGAGGG 59.167 60.000 9.11 0.00 0.00 4.30
2804 6882 1.340017 CCCAACTGGAGTACATGTGGG 60.340 57.143 9.11 8.73 43.03 4.61
2808 6886 3.981071 TCTTCCCAACTGGAGTACATG 57.019 47.619 0.00 0.00 46.24 3.21
2809 6887 4.168101 TCTTCTTCCCAACTGGAGTACAT 58.832 43.478 0.00 0.00 46.24 2.29
2810 6888 3.583228 TCTTCTTCCCAACTGGAGTACA 58.417 45.455 0.00 0.00 46.24 2.90
2826 6904 0.694771 TGGTCAGCTGGCAATCTTCT 59.305 50.000 21.89 0.00 0.00 2.85
2865 6943 5.302313 GGATCTCCTTGTAGTTCGAAGGTAT 59.698 44.000 0.00 0.00 39.91 2.73
2866 6944 4.643784 GGATCTCCTTGTAGTTCGAAGGTA 59.356 45.833 0.00 0.00 39.91 3.08
2868 6946 3.447586 TGGATCTCCTTGTAGTTCGAAGG 59.552 47.826 0.00 0.00 40.26 3.46
2869 6947 4.425520 GTGGATCTCCTTGTAGTTCGAAG 58.574 47.826 0.00 0.00 36.82 3.79
2870 6948 3.194968 GGTGGATCTCCTTGTAGTTCGAA 59.805 47.826 0.00 0.00 36.82 3.71
2871 6949 2.758979 GGTGGATCTCCTTGTAGTTCGA 59.241 50.000 0.00 0.00 36.82 3.71
2872 6950 2.159085 GGGTGGATCTCCTTGTAGTTCG 60.159 54.545 0.00 0.00 36.82 3.95
2891 6969 3.155167 GCCTCAGGGTAGTCGGGG 61.155 72.222 0.00 0.00 34.45 5.73
2903 6981 2.282674 ACCCGACGTACTGCCTCA 60.283 61.111 0.00 0.00 0.00 3.86
2914 6992 0.955428 TTGATTGCTCTGCACCCGAC 60.955 55.000 0.00 0.00 38.71 4.79
2917 6995 0.524862 CAGTTGATTGCTCTGCACCC 59.475 55.000 0.00 0.00 38.71 4.61
2918 6996 1.198637 GTCAGTTGATTGCTCTGCACC 59.801 52.381 0.00 0.00 38.71 5.01
2919 6997 1.875514 TGTCAGTTGATTGCTCTGCAC 59.124 47.619 0.00 0.00 38.71 4.57
2920 6998 2.259266 TGTCAGTTGATTGCTCTGCA 57.741 45.000 0.00 0.00 36.47 4.41
2921 6999 3.686241 TGTATGTCAGTTGATTGCTCTGC 59.314 43.478 0.00 0.00 0.00 4.26
3031 7290 6.564709 AACACATGCAATAGCCATATACAG 57.435 37.500 0.00 0.00 41.13 2.74
3032 7291 7.223584 AGTAACACATGCAATAGCCATATACA 58.776 34.615 0.00 0.00 41.13 2.29
3034 7293 8.567104 CAAAGTAACACATGCAATAGCCATATA 58.433 33.333 0.00 0.00 41.13 0.86
3035 7294 7.428020 CAAAGTAACACATGCAATAGCCATAT 58.572 34.615 0.00 0.00 41.13 1.78
3036 7295 6.680131 GCAAAGTAACACATGCAATAGCCATA 60.680 38.462 0.00 0.00 41.13 2.74
3037 7296 5.653507 CAAAGTAACACATGCAATAGCCAT 58.346 37.500 0.00 0.00 41.13 4.40
3038 7297 4.617995 GCAAAGTAACACATGCAATAGCCA 60.618 41.667 0.00 0.00 41.13 4.75
3042 7301 5.242615 TGGAAGCAAAGTAACACATGCAATA 59.757 36.000 0.00 0.00 41.18 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.