Multiple sequence alignment - TraesCS3A01G420900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G420900 chr3A 100.000 2873 0 0 1 2873 662414610 662411738 0.000000e+00 5306.0
1 TraesCS3A01G420900 chr3D 87.341 2275 158 65 189 2407 527676397 527674197 0.000000e+00 2486.0
2 TraesCS3A01G420900 chr3D 76.289 194 45 1 2460 2652 464321018 464321211 5.060000e-18 102.0
3 TraesCS3A01G420900 chr3B 88.802 1795 116 43 657 2401 697911397 697909638 0.000000e+00 2122.0
4 TraesCS3A01G420900 chr3B 75.130 193 42 1 2460 2646 73739786 73739594 5.100000e-13 86.1
5 TraesCS3A01G420900 chr6B 78.419 329 54 8 2557 2869 579099837 579099510 6.280000e-47 198.0
6 TraesCS3A01G420900 chr5A 76.762 383 72 8 2503 2869 653928193 653927812 6.280000e-47 198.0
7 TraesCS3A01G420900 chr5A 84.884 172 22 4 2699 2869 493773892 493773724 1.370000e-38 171.0
8 TraesCS3A01G420900 chr4D 87.574 169 17 2 2699 2867 134639082 134639246 2.920000e-45 193.0
9 TraesCS3A01G420900 chr7B 84.659 176 21 5 2699 2873 672912217 672912387 1.370000e-38 171.0
10 TraesCS3A01G420900 chr2A 84.659 176 22 4 2699 2873 734364857 734364686 1.370000e-38 171.0
11 TraesCS3A01G420900 chr1A 81.148 122 15 6 2737 2857 391240663 391240777 1.100000e-14 91.6
12 TraesCS3A01G420900 chr2B 92.308 39 1 2 2615 2652 230588606 230588569 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G420900 chr3A 662411738 662414610 2872 True 5306 5306 100.000 1 2873 1 chr3A.!!$R1 2872
1 TraesCS3A01G420900 chr3D 527674197 527676397 2200 True 2486 2486 87.341 189 2407 1 chr3D.!!$R1 2218
2 TraesCS3A01G420900 chr3B 697909638 697911397 1759 True 2122 2122 88.802 657 2401 1 chr3B.!!$R2 1744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 861 0.093026 CTACTAACGCAAGCACGCAC 59.907 55.0 0.0 0.0 45.62 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 2658 0.037046 GCCAACCCAAGCATTTGAGG 60.037 55.0 0.0 0.0 36.36 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.641645 CGTGCTGACCTGGCCCAA 62.642 66.667 0.00 0.00 0.00 4.12
57 58 2.036256 GTGCTGACCTGGCCCAAT 59.964 61.111 0.00 0.00 0.00 3.16
58 59 2.048603 GTGCTGACCTGGCCCAATC 61.049 63.158 0.00 0.00 0.00 2.67
59 60 2.356278 GCTGACCTGGCCCAATCA 59.644 61.111 0.00 0.00 0.00 2.57
60 61 1.751927 GCTGACCTGGCCCAATCAG 60.752 63.158 16.84 16.84 41.29 2.90
61 62 1.993653 CTGACCTGGCCCAATCAGA 59.006 57.895 16.36 0.00 40.92 3.27
62 63 0.107312 CTGACCTGGCCCAATCAGAG 60.107 60.000 16.36 0.00 40.92 3.35
63 64 1.225704 GACCTGGCCCAATCAGAGG 59.774 63.158 0.00 0.00 34.36 3.69
68 69 4.055654 GCCCAATCAGAGGCGATC 57.944 61.111 0.00 0.00 39.87 3.69
69 70 1.958205 GCCCAATCAGAGGCGATCG 60.958 63.158 11.69 11.69 39.87 3.69
70 71 1.958205 CCCAATCAGAGGCGATCGC 60.958 63.158 31.52 31.52 41.06 4.58
81 82 4.271816 CGATCGCCCGTCCTCCAG 62.272 72.222 0.26 0.00 0.00 3.86
82 83 4.593864 GATCGCCCGTCCTCCAGC 62.594 72.222 0.00 0.00 0.00 4.85
125 126 2.807045 GCGACAGTGCGTGGAGAG 60.807 66.667 8.39 0.00 0.00 3.20
126 127 2.954611 CGACAGTGCGTGGAGAGA 59.045 61.111 0.00 0.00 0.00 3.10
127 128 1.508545 CGACAGTGCGTGGAGAGAT 59.491 57.895 0.00 0.00 0.00 2.75
128 129 0.799917 CGACAGTGCGTGGAGAGATG 60.800 60.000 0.00 0.00 0.00 2.90
129 130 1.079543 ACAGTGCGTGGAGAGATGC 60.080 57.895 0.00 0.00 0.00 3.91
130 131 1.812922 CAGTGCGTGGAGAGATGCC 60.813 63.158 0.00 0.00 0.00 4.40
131 132 2.887568 GTGCGTGGAGAGATGCCG 60.888 66.667 0.00 0.00 0.00 5.69
132 133 4.819761 TGCGTGGAGAGATGCCGC 62.820 66.667 0.00 0.00 44.27 6.53
145 146 4.540153 GCCGCGGCATATCCATAT 57.460 55.556 43.55 0.00 41.49 1.78
146 147 2.311294 GCCGCGGCATATCCATATC 58.689 57.895 43.55 10.50 41.49 1.63
147 148 1.160329 GCCGCGGCATATCCATATCC 61.160 60.000 43.55 10.27 41.49 2.59
148 149 0.532862 CCGCGGCATATCCATATCCC 60.533 60.000 14.67 0.00 34.01 3.85
149 150 0.875908 CGCGGCATATCCATATCCCG 60.876 60.000 4.76 4.76 34.01 5.14
150 151 1.160329 GCGGCATATCCATATCCCGC 61.160 60.000 16.26 16.26 34.01 6.13
151 152 0.532862 CGGCATATCCATATCCCGCC 60.533 60.000 0.00 0.00 34.01 6.13
152 153 0.179018 GGCATATCCATATCCCGCCC 60.179 60.000 0.00 0.00 34.01 6.13
153 154 0.179018 GCATATCCATATCCCGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
154 155 0.106708 CATATCCATATCCCGCCCCG 59.893 60.000 0.00 0.00 0.00 5.73
155 156 1.696097 ATATCCATATCCCGCCCCGC 61.696 60.000 0.00 0.00 0.00 6.13
171 172 2.603776 GCCCCTCGGATCGGGTAT 60.604 66.667 10.95 0.00 41.85 2.73
172 173 1.304713 GCCCCTCGGATCGGGTATA 60.305 63.158 10.95 0.00 41.85 1.47
173 174 0.686769 GCCCCTCGGATCGGGTATAT 60.687 60.000 10.95 0.00 41.85 0.86
174 175 1.400737 CCCCTCGGATCGGGTATATC 58.599 60.000 3.75 0.00 40.24 1.63
175 176 1.400737 CCCTCGGATCGGGTATATCC 58.599 60.000 0.00 0.00 39.71 2.59
176 177 1.063867 CCCTCGGATCGGGTATATCCT 60.064 57.143 0.00 0.00 40.74 3.24
177 178 2.025155 CCTCGGATCGGGTATATCCTG 58.975 57.143 0.00 0.00 40.74 3.86
178 179 1.405821 CTCGGATCGGGTATATCCTGC 59.594 57.143 0.00 0.00 40.74 4.85
179 180 0.100682 CGGATCGGGTATATCCTGCG 59.899 60.000 0.00 0.00 40.74 5.18
180 181 0.179108 GGATCGGGTATATCCTGCGC 60.179 60.000 0.00 0.00 42.13 6.09
181 182 0.818296 GATCGGGTATATCCTGCGCT 59.182 55.000 9.73 0.00 42.13 5.92
182 183 0.532573 ATCGGGTATATCCTGCGCTG 59.467 55.000 9.73 8.47 42.13 5.18
183 184 1.079819 CGGGTATATCCTGCGCTGG 60.080 63.158 26.06 26.06 35.61 4.85
184 185 1.376037 GGGTATATCCTGCGCTGGC 60.376 63.158 27.02 13.19 40.52 4.85
185 186 1.674057 GGTATATCCTGCGCTGGCT 59.326 57.895 27.02 20.63 40.82 4.75
186 187 0.671781 GGTATATCCTGCGCTGGCTG 60.672 60.000 27.02 5.59 40.82 4.85
187 188 1.004560 TATATCCTGCGCTGGCTGC 60.005 57.895 27.02 6.26 40.82 5.25
198 199 0.322648 GCTGGCTGCCCAATTCTTTT 59.677 50.000 17.53 0.00 41.58 2.27
209 210 1.885887 CAATTCTTTTGAGGACGGGCA 59.114 47.619 0.00 0.00 0.00 5.36
212 213 2.966309 CTTTTGAGGACGGGCACGC 61.966 63.158 9.12 0.00 46.04 5.34
213 214 3.758973 TTTTGAGGACGGGCACGCA 62.759 57.895 9.12 0.00 46.04 5.24
214 215 4.980805 TTGAGGACGGGCACGCAC 62.981 66.667 9.12 0.00 46.04 5.34
236 237 0.249868 CACAGGGCACTCGTGAAAGA 60.250 55.000 11.69 0.00 35.42 2.52
237 238 0.468226 ACAGGGCACTCGTGAAAGAA 59.532 50.000 0.39 0.00 35.42 2.52
238 239 1.134220 ACAGGGCACTCGTGAAAGAAA 60.134 47.619 0.39 0.00 35.42 2.52
239 240 1.532868 CAGGGCACTCGTGAAAGAAAG 59.467 52.381 0.39 0.00 33.39 2.62
247 248 4.723862 CACTCGTGAAAGAAAGTTTCAACG 59.276 41.667 17.65 18.40 39.76 4.10
250 251 4.033587 TCGTGAAAGAAAGTTTCAACGAGG 59.966 41.667 21.51 9.72 39.76 4.63
270 271 0.801067 AGACGTTGCGGCTAATCGTC 60.801 55.000 21.40 21.40 46.54 4.20
271 272 1.749609 GACGTTGCGGCTAATCGTCC 61.750 60.000 19.71 9.21 42.94 4.79
273 274 2.202824 TTGCGGCTAATCGTCCGG 60.203 61.111 0.00 0.00 45.37 5.14
284 285 4.957266 CGTCCGGCGAATATGCTA 57.043 55.556 9.30 0.00 44.77 3.49
291 292 2.325761 CGGCGAATATGCTAGTACCAC 58.674 52.381 0.00 0.00 34.52 4.16
338 339 3.371102 GGGTCACCTGAAAAGCTTTTC 57.629 47.619 34.85 34.85 45.13 2.29
347 348 3.736050 GAAAAGCTTTTCAAACGCTCG 57.264 42.857 35.88 0.00 44.48 5.03
356 357 1.978542 TCAAACGCTCGTCTAGAAGC 58.021 50.000 6.38 6.38 0.00 3.86
378 379 3.186001 CGACGCGGTACTACTGATAATCT 59.814 47.826 12.47 0.00 0.00 2.40
381 382 4.024218 ACGCGGTACTACTGATAATCTGAC 60.024 45.833 12.47 0.00 0.00 3.51
392 393 6.112734 ACTGATAATCTGACGCAAATTACCA 58.887 36.000 0.00 0.00 0.00 3.25
407 408 1.842052 TACCACCACTGCTATCACGA 58.158 50.000 0.00 0.00 0.00 4.35
428 429 0.366871 CAGCGTTTCCTCGATCGTTG 59.633 55.000 15.94 9.28 0.00 4.10
431 432 0.633733 CGTTTCCTCGATCGTTGTCG 59.366 55.000 15.94 9.84 42.74 4.35
432 433 0.989890 GTTTCCTCGATCGTTGTCGG 59.010 55.000 15.94 9.05 41.74 4.79
433 434 0.599558 TTTCCTCGATCGTTGTCGGT 59.400 50.000 15.94 0.00 41.74 4.69
434 435 0.109458 TTCCTCGATCGTTGTCGGTG 60.109 55.000 15.94 0.00 41.74 4.94
436 437 0.448990 CCTCGATCGTTGTCGGTGTA 59.551 55.000 15.94 0.00 41.74 2.90
437 438 1.531912 CTCGATCGTTGTCGGTGTAC 58.468 55.000 15.94 0.00 41.74 2.90
438 439 0.168788 TCGATCGTTGTCGGTGTACC 59.831 55.000 15.94 0.00 41.74 3.34
440 441 1.468565 CGATCGTTGTCGGTGTACCAT 60.469 52.381 7.03 0.00 37.94 3.55
441 442 1.924524 GATCGTTGTCGGTGTACCATG 59.075 52.381 1.50 0.00 37.69 3.66
442 443 0.675083 TCGTTGTCGGTGTACCATGT 59.325 50.000 1.50 0.00 37.69 3.21
443 444 1.885233 TCGTTGTCGGTGTACCATGTA 59.115 47.619 1.50 0.00 37.69 2.29
451 459 3.193056 TCGGTGTACCATGTATTCAACGA 59.807 43.478 9.08 9.08 44.01 3.85
489 497 1.299926 GACGTCGTGTTCACTGGCT 60.300 57.895 0.63 0.00 0.00 4.75
491 499 2.365068 CGTCGTGTTCACTGGCTCG 61.365 63.158 1.53 0.00 0.00 5.03
512 520 0.896479 TCGGATCCACGTGTTCAGGA 60.896 55.000 15.65 4.18 35.59 3.86
514 522 0.608640 GGATCCACGTGTTCAGGACT 59.391 55.000 15.65 0.00 33.57 3.85
515 523 1.002087 GGATCCACGTGTTCAGGACTT 59.998 52.381 15.65 0.00 33.57 3.01
517 525 1.116308 TCCACGTGTTCAGGACTTCA 58.884 50.000 15.65 0.00 0.00 3.02
518 526 1.202486 TCCACGTGTTCAGGACTTCAC 60.202 52.381 15.65 0.00 0.00 3.18
522 530 1.129326 GTGTTCAGGACTTCACGACG 58.871 55.000 0.00 0.00 0.00 5.12
524 532 1.006571 TTCAGGACTTCACGACGGC 60.007 57.895 0.00 0.00 0.00 5.68
525 533 1.740332 TTCAGGACTTCACGACGGCA 61.740 55.000 0.00 0.00 0.00 5.69
526 534 2.022129 CAGGACTTCACGACGGCAC 61.022 63.158 0.00 0.00 0.00 5.01
541 565 2.398554 GCACGCCATGTCGAACCAT 61.399 57.895 1.83 0.00 0.00 3.55
548 572 0.108377 CATGTCGAACCATGGTCGGA 60.108 55.000 26.01 20.09 38.83 4.55
549 573 0.611200 ATGTCGAACCATGGTCGGAA 59.389 50.000 26.01 18.50 0.00 4.30
553 577 1.019278 CGAACCATGGTCGGAACTGG 61.019 60.000 20.07 0.00 34.84 4.00
557 581 1.026718 CCATGGTCGGAACTGGAAGC 61.027 60.000 2.57 0.00 37.60 3.86
558 582 1.079127 ATGGTCGGAACTGGAAGCG 60.079 57.895 0.00 0.00 37.60 4.68
560 584 1.218316 GGTCGGAACTGGAAGCGAT 59.782 57.895 0.00 0.00 37.60 4.58
563 587 1.925185 GTCGGAACTGGAAGCGATAAC 59.075 52.381 0.00 0.00 37.60 1.89
564 588 1.546923 TCGGAACTGGAAGCGATAACA 59.453 47.619 0.00 0.00 37.60 2.41
566 590 2.280628 GGAACTGGAAGCGATAACAGG 58.719 52.381 8.99 0.00 37.60 4.00
567 591 1.666189 GAACTGGAAGCGATAACAGGC 59.334 52.381 8.99 0.00 37.60 4.85
569 593 0.107703 CTGGAAGCGATAACAGGCCA 60.108 55.000 5.01 0.00 0.00 5.36
578 614 3.742640 GCGATAACAGGCCATTCTCTTCT 60.743 47.826 5.01 0.00 0.00 2.85
582 618 3.618690 ACAGGCCATTCTCTTCTACAC 57.381 47.619 5.01 0.00 0.00 2.90
583 619 2.906389 ACAGGCCATTCTCTTCTACACA 59.094 45.455 5.01 0.00 0.00 3.72
602 638 3.064958 CACATGTCAGCCATCAGTCAATC 59.935 47.826 0.00 0.00 0.00 2.67
603 639 3.275999 CATGTCAGCCATCAGTCAATCA 58.724 45.455 0.00 0.00 0.00 2.57
604 640 3.421919 TGTCAGCCATCAGTCAATCAA 57.578 42.857 0.00 0.00 0.00 2.57
609 645 3.005554 AGCCATCAGTCAATCAAACTCG 58.994 45.455 0.00 0.00 0.00 4.18
613 649 4.320421 CCATCAGTCAATCAAACTCGCAAA 60.320 41.667 0.00 0.00 0.00 3.68
616 652 4.095632 TCAGTCAATCAAACTCGCAAACAA 59.904 37.500 0.00 0.00 0.00 2.83
622 658 2.095668 TCAAACTCGCAAACAAACGTGT 60.096 40.909 0.00 0.00 40.75 4.49
623 659 3.124806 TCAAACTCGCAAACAAACGTGTA 59.875 39.130 0.00 0.00 36.80 2.90
624 660 3.313274 AACTCGCAAACAAACGTGTAG 57.687 42.857 0.00 0.00 36.80 2.74
626 662 1.260561 CTCGCAAACAAACGTGTAGCT 59.739 47.619 0.00 0.00 36.80 3.32
627 663 1.004398 TCGCAAACAAACGTGTAGCTG 60.004 47.619 0.00 0.00 36.80 4.24
628 664 1.004398 CGCAAACAAACGTGTAGCTGA 60.004 47.619 0.00 0.00 36.80 4.26
630 666 3.628017 GCAAACAAACGTGTAGCTGATT 58.372 40.909 0.00 0.00 36.80 2.57
633 669 5.856455 GCAAACAAACGTGTAGCTGATTAAT 59.144 36.000 0.00 0.00 36.80 1.40
635 671 7.409343 GCAAACAAACGTGTAGCTGATTAATTC 60.409 37.037 0.00 0.00 36.80 2.17
636 672 6.795098 ACAAACGTGTAGCTGATTAATTCA 57.205 33.333 0.00 0.00 35.72 2.57
637 673 6.831769 ACAAACGTGTAGCTGATTAATTCAG 58.168 36.000 0.00 9.33 44.82 3.02
639 675 7.571244 ACAAACGTGTAGCTGATTAATTCAGTG 60.571 37.037 0.00 0.00 44.31 3.66
644 680 2.373735 CTGATTAATTCAGTGCGCGG 57.626 50.000 8.83 0.00 45.79 6.46
645 681 1.003545 CTGATTAATTCAGTGCGCGGG 60.004 52.381 8.83 0.00 45.79 6.13
646 682 0.307760 GATTAATTCAGTGCGCGGGG 59.692 55.000 8.83 0.00 0.00 5.73
647 683 1.724582 ATTAATTCAGTGCGCGGGGC 61.725 55.000 8.83 10.44 43.96 5.80
687 723 3.009115 GGCACCTAGACCTGCCCA 61.009 66.667 12.70 0.00 46.38 5.36
690 726 1.992277 CACCTAGACCTGCCCAGCT 60.992 63.158 0.00 0.00 0.00 4.24
733 771 1.003233 GGAGCCGGAGCATATTCCC 60.003 63.158 5.05 0.00 43.56 3.97
745 783 2.862541 CATATTCCCGGGCTCAATTCA 58.137 47.619 18.49 0.00 0.00 2.57
746 784 3.221771 CATATTCCCGGGCTCAATTCAA 58.778 45.455 18.49 1.68 0.00 2.69
747 785 2.459555 ATTCCCGGGCTCAATTCAAT 57.540 45.000 18.49 4.55 0.00 2.57
748 786 2.230130 TTCCCGGGCTCAATTCAATT 57.770 45.000 18.49 0.00 0.00 2.32
749 787 1.762708 TCCCGGGCTCAATTCAATTC 58.237 50.000 18.49 0.00 0.00 2.17
750 788 0.746659 CCCGGGCTCAATTCAATTCC 59.253 55.000 8.08 0.00 0.00 3.01
778 816 2.811317 GCGGCGTCCAGAAGACAG 60.811 66.667 9.37 0.00 46.69 3.51
784 822 0.445436 CGTCCAGAAGACAGCAATGC 59.555 55.000 0.00 0.00 46.69 3.56
799 837 0.593128 AATGCTAATCAATCCGCGCC 59.407 50.000 0.00 0.00 0.00 6.53
823 861 0.093026 CTACTAACGCAAGCACGCAC 59.907 55.000 0.00 0.00 45.62 5.34
824 862 1.610715 TACTAACGCAAGCACGCACG 61.611 55.000 0.00 0.00 45.62 5.34
893 931 2.432628 CCGCGAGTGTCAACCTCC 60.433 66.667 8.23 0.00 0.00 4.30
928 966 2.743928 CACCGCAACCTCCAGCTC 60.744 66.667 0.00 0.00 0.00 4.09
932 970 2.037136 CGCAACCTCCAGCTCCAAG 61.037 63.158 0.00 0.00 0.00 3.61
933 971 1.073897 GCAACCTCCAGCTCCAAGT 59.926 57.895 0.00 0.00 0.00 3.16
934 972 0.538287 GCAACCTCCAGCTCCAAGTT 60.538 55.000 0.00 0.00 0.00 2.66
935 973 1.528129 CAACCTCCAGCTCCAAGTTC 58.472 55.000 0.00 0.00 0.00 3.01
936 974 1.140312 AACCTCCAGCTCCAAGTTCA 58.860 50.000 0.00 0.00 0.00 3.18
952 999 1.999071 TTCACGCACACACAAAGCCC 61.999 55.000 0.00 0.00 0.00 5.19
998 1045 2.281484 GCCACGACAAAGGGCAGA 60.281 61.111 0.00 0.00 46.92 4.26
1759 1812 2.105128 CGCCGTCCTCCTCATCAC 59.895 66.667 0.00 0.00 0.00 3.06
1761 1814 2.359169 GCCGTCCTCCTCATCACCA 61.359 63.158 0.00 0.00 0.00 4.17
1886 1942 3.450115 GTAGCTCCTCGGCACCGT 61.450 66.667 9.23 0.00 40.74 4.83
1888 1944 3.001902 TAGCTCCTCGGCACCGTTG 62.002 63.158 9.23 3.62 40.74 4.10
1899 1955 1.736645 CACCGTTGATTCTCCGCGT 60.737 57.895 4.92 0.00 0.00 6.01
1900 1956 1.445582 ACCGTTGATTCTCCGCGTC 60.446 57.895 4.92 0.00 0.00 5.19
1902 1958 2.165301 CGTTGATTCTCCGCGTCCC 61.165 63.158 4.92 0.00 0.00 4.46
1903 1959 1.814169 GTTGATTCTCCGCGTCCCC 60.814 63.158 4.92 0.00 0.00 4.81
1916 1972 1.301009 GTCCCCGGAAGATCGATGC 60.301 63.158 0.54 0.00 0.00 3.91
1942 2010 7.041167 CCATAGATGTAGAGAGATGATCGATCC 60.041 44.444 22.31 8.20 0.00 3.36
1968 2036 0.025128 GCGAGCCTCGAATTCGTTTC 59.975 55.000 25.93 17.12 43.74 2.78
1980 2048 6.773080 TCGAATTCGTTTCTTGTACAAACAA 58.227 32.000 25.93 2.76 40.74 2.83
2030 2105 3.942829 AGAGCGAATTGTTCTTCCATCA 58.057 40.909 0.00 0.00 33.96 3.07
2045 2120 3.746940 TCCATCAACATGCATGATCGAT 58.253 40.909 32.75 24.07 35.38 3.59
2071 2147 0.901580 AACCTTGAAGCAGCCATGGG 60.902 55.000 15.13 0.00 34.30 4.00
2072 2148 2.056223 CCTTGAAGCAGCCATGGGG 61.056 63.158 15.13 0.00 37.18 4.96
2105 2181 1.588239 TGGATCTTGGTCAGCTGGAT 58.412 50.000 15.13 8.04 0.00 3.41
2129 2212 2.697431 AAAAGCGTGCGCAAAGATTA 57.303 40.000 14.00 0.00 44.88 1.75
2131 2214 1.963747 AAGCGTGCGCAAAGATTAAC 58.036 45.000 14.00 0.00 44.88 2.01
2132 2215 0.871722 AGCGTGCGCAAAGATTAACA 59.128 45.000 14.00 0.00 44.88 2.41
2133 2216 1.135972 AGCGTGCGCAAAGATTAACAG 60.136 47.619 14.00 0.00 44.88 3.16
2136 2219 3.747193 CGTGCGCAAAGATTAACAGAAT 58.253 40.909 14.00 0.00 0.00 2.40
2137 2220 3.539563 CGTGCGCAAAGATTAACAGAATG 59.460 43.478 14.00 0.00 46.00 2.67
2144 2227 8.859156 GCGCAAAGATTAACAGAATGAAAATTA 58.141 29.630 0.30 0.00 39.69 1.40
2162 2249 5.977489 AATTAAAAGAGACGGGAAAAGGG 57.023 39.130 0.00 0.00 0.00 3.95
2163 2250 4.710313 TTAAAAGAGACGGGAAAAGGGA 57.290 40.909 0.00 0.00 0.00 4.20
2169 2256 0.679960 GACGGGAAAAGGGACCATGG 60.680 60.000 11.19 11.19 0.00 3.66
2208 2299 1.819632 GGCAGGTGTAGCCGGATTG 60.820 63.158 5.05 0.00 43.15 2.67
2247 2339 3.303395 GGCATTACTTTATCACTCTGCGC 60.303 47.826 0.00 0.00 0.00 6.09
2248 2340 3.557595 GCATTACTTTATCACTCTGCGCT 59.442 43.478 9.73 0.00 0.00 5.92
2249 2341 4.318404 GCATTACTTTATCACTCTGCGCTC 60.318 45.833 9.73 0.00 0.00 5.03
2250 2342 4.720649 TTACTTTATCACTCTGCGCTCT 57.279 40.909 9.73 0.00 0.00 4.09
2251 2343 2.886081 ACTTTATCACTCTGCGCTCTG 58.114 47.619 9.73 0.16 0.00 3.35
2252 2344 1.592081 CTTTATCACTCTGCGCTCTGC 59.408 52.381 9.73 0.00 46.70 4.26
2281 2373 0.161235 CGGCGTCGAGATCGTACTAG 59.839 60.000 1.44 0.00 40.80 2.57
2284 2376 2.797156 GGCGTCGAGATCGTACTAGTAA 59.203 50.000 3.61 0.00 40.80 2.24
2287 2379 5.290643 GGCGTCGAGATCGTACTAGTAATAT 59.709 44.000 3.61 1.00 40.80 1.28
2293 2394 7.912773 TCGAGATCGTACTAGTAATATACTCCG 59.087 40.741 3.61 1.64 39.15 4.63
2303 2404 5.533482 AGTAATATACTCCGAGCAAGCAAG 58.467 41.667 0.00 0.00 32.47 4.01
2351 2452 2.186903 GCGAGGCGGAATTCTGGA 59.813 61.111 16.03 0.00 0.00 3.86
2367 2468 2.815503 TCTGGACGTGATCTTTCGTACA 59.184 45.455 17.40 17.40 46.46 2.90
2369 2470 3.979948 TGGACGTGATCTTTCGTACAAA 58.020 40.909 16.57 1.01 45.82 2.83
2370 2471 4.562082 TGGACGTGATCTTTCGTACAAAT 58.438 39.130 16.57 0.00 45.82 2.32
2390 2491 4.870021 ATTTTTGTCTGGGCTAGGATCT 57.130 40.909 0.00 0.00 0.00 2.75
2415 2516 3.260483 CACATGGCGCGCTCTCTC 61.260 66.667 32.29 14.61 0.00 3.20
2416 2517 3.456365 ACATGGCGCGCTCTCTCT 61.456 61.111 32.29 5.86 0.00 3.10
2417 2518 2.121538 ACATGGCGCGCTCTCTCTA 61.122 57.895 32.29 9.05 0.00 2.43
2418 2519 1.659954 CATGGCGCGCTCTCTCTAC 60.660 63.158 32.29 12.15 0.00 2.59
2419 2520 2.121538 ATGGCGCGCTCTCTCTACA 61.122 57.895 32.29 17.96 0.00 2.74
2420 2521 1.459455 ATGGCGCGCTCTCTCTACAT 61.459 55.000 32.29 19.49 0.00 2.29
2421 2522 1.066587 GGCGCGCTCTCTCTACATT 59.933 57.895 32.29 0.00 0.00 2.71
2422 2523 0.528684 GGCGCGCTCTCTCTACATTT 60.529 55.000 32.29 0.00 0.00 2.32
2423 2524 0.849579 GCGCGCTCTCTCTACATTTC 59.150 55.000 26.67 0.00 0.00 2.17
2424 2525 1.799181 GCGCGCTCTCTCTACATTTCA 60.799 52.381 26.67 0.00 0.00 2.69
2425 2526 2.115595 CGCGCTCTCTCTACATTTCAG 58.884 52.381 5.56 0.00 0.00 3.02
2426 2527 1.857837 GCGCTCTCTCTACATTTCAGC 59.142 52.381 0.00 0.00 0.00 4.26
2427 2528 2.468831 CGCTCTCTCTACATTTCAGCC 58.531 52.381 0.00 0.00 0.00 4.85
2428 2529 2.100584 CGCTCTCTCTACATTTCAGCCT 59.899 50.000 0.00 0.00 0.00 4.58
2429 2530 3.430098 CGCTCTCTCTACATTTCAGCCTT 60.430 47.826 0.00 0.00 0.00 4.35
2430 2531 3.870419 GCTCTCTCTACATTTCAGCCTTG 59.130 47.826 0.00 0.00 0.00 3.61
2431 2532 3.866651 TCTCTCTACATTTCAGCCTTGC 58.133 45.455 0.00 0.00 0.00 4.01
2432 2533 3.261643 TCTCTCTACATTTCAGCCTTGCA 59.738 43.478 0.00 0.00 0.00 4.08
2433 2534 4.005650 CTCTCTACATTTCAGCCTTGCAA 58.994 43.478 0.00 0.00 0.00 4.08
2434 2535 4.397420 TCTCTACATTTCAGCCTTGCAAA 58.603 39.130 0.00 0.00 0.00 3.68
2435 2536 4.216257 TCTCTACATTTCAGCCTTGCAAAC 59.784 41.667 0.00 0.00 0.00 2.93
2436 2537 3.888323 TCTACATTTCAGCCTTGCAAACA 59.112 39.130 0.00 0.00 0.00 2.83
2437 2538 3.540314 ACATTTCAGCCTTGCAAACAA 57.460 38.095 0.00 0.00 0.00 2.83
2453 2554 8.671384 TTGCAAACAAGATTACAGTAAGTACT 57.329 30.769 0.00 0.00 36.90 2.73
2471 2572 2.526432 ACTGAGTGTACAATCGGACCT 58.474 47.619 32.58 12.63 35.53 3.85
2472 2573 2.492484 ACTGAGTGTACAATCGGACCTC 59.508 50.000 32.58 17.33 35.53 3.85
2473 2574 2.755655 CTGAGTGTACAATCGGACCTCT 59.244 50.000 24.38 1.34 33.96 3.69
2474 2575 2.753452 TGAGTGTACAATCGGACCTCTC 59.247 50.000 17.64 7.90 0.00 3.20
2475 2576 2.753452 GAGTGTACAATCGGACCTCTCA 59.247 50.000 7.66 0.00 0.00 3.27
2476 2577 3.162666 AGTGTACAATCGGACCTCTCAA 58.837 45.455 0.00 0.00 0.00 3.02
2477 2578 3.576982 AGTGTACAATCGGACCTCTCAAA 59.423 43.478 0.00 0.00 0.00 2.69
2478 2579 3.678548 GTGTACAATCGGACCTCTCAAAC 59.321 47.826 0.00 0.00 0.00 2.93
2479 2580 2.474410 ACAATCGGACCTCTCAAACC 57.526 50.000 0.00 0.00 0.00 3.27
2480 2581 1.003233 ACAATCGGACCTCTCAAACCC 59.997 52.381 0.00 0.00 0.00 4.11
2481 2582 0.249398 AATCGGACCTCTCAAACCCG 59.751 55.000 0.00 0.00 41.36 5.28
2482 2583 0.903454 ATCGGACCTCTCAAACCCGT 60.903 55.000 0.00 0.00 40.87 5.28
2483 2584 1.080025 CGGACCTCTCAAACCCGTC 60.080 63.158 0.00 0.00 35.83 4.79
2484 2585 1.533469 CGGACCTCTCAAACCCGTCT 61.533 60.000 0.00 0.00 35.83 4.18
2485 2586 0.246910 GGACCTCTCAAACCCGTCTC 59.753 60.000 0.00 0.00 0.00 3.36
2486 2587 0.966920 GACCTCTCAAACCCGTCTCA 59.033 55.000 0.00 0.00 0.00 3.27
2487 2588 1.550976 GACCTCTCAAACCCGTCTCAT 59.449 52.381 0.00 0.00 0.00 2.90
2488 2589 2.758979 GACCTCTCAAACCCGTCTCATA 59.241 50.000 0.00 0.00 0.00 2.15
2489 2590 2.496470 ACCTCTCAAACCCGTCTCATAC 59.504 50.000 0.00 0.00 0.00 2.39
2490 2591 2.496070 CCTCTCAAACCCGTCTCATACA 59.504 50.000 0.00 0.00 0.00 2.29
2491 2592 3.133003 CCTCTCAAACCCGTCTCATACAT 59.867 47.826 0.00 0.00 0.00 2.29
2492 2593 4.363999 CTCTCAAACCCGTCTCATACATC 58.636 47.826 0.00 0.00 0.00 3.06
2493 2594 4.023980 TCTCAAACCCGTCTCATACATCT 58.976 43.478 0.00 0.00 0.00 2.90
2494 2595 4.115516 CTCAAACCCGTCTCATACATCTG 58.884 47.826 0.00 0.00 0.00 2.90
2495 2596 3.118775 TCAAACCCGTCTCATACATCTGG 60.119 47.826 0.00 0.00 0.00 3.86
2496 2597 1.414158 ACCCGTCTCATACATCTGGG 58.586 55.000 0.00 0.00 41.06 4.45
2497 2598 1.343075 ACCCGTCTCATACATCTGGGT 60.343 52.381 0.00 0.00 43.42 4.51
2498 2599 2.091499 ACCCGTCTCATACATCTGGGTA 60.091 50.000 0.00 0.00 46.24 3.69
2499 2600 2.558795 CCCGTCTCATACATCTGGGTAG 59.441 54.545 0.00 0.00 0.00 3.18
2500 2601 3.487372 CCGTCTCATACATCTGGGTAGA 58.513 50.000 0.00 0.00 37.35 2.59
2501 2602 3.889538 CCGTCTCATACATCTGGGTAGAA 59.110 47.826 0.00 0.00 36.32 2.10
2502 2603 4.261656 CCGTCTCATACATCTGGGTAGAAC 60.262 50.000 0.00 0.00 36.32 3.01
2503 2604 4.554919 CGTCTCATACATCTGGGTAGAACG 60.555 50.000 0.00 0.00 36.32 3.95
2504 2605 3.318275 TCTCATACATCTGGGTAGAACGC 59.682 47.826 0.00 0.00 36.32 4.84
2505 2606 3.296854 TCATACATCTGGGTAGAACGCT 58.703 45.455 0.00 0.00 36.32 5.07
2506 2607 3.318275 TCATACATCTGGGTAGAACGCTC 59.682 47.826 0.00 0.00 36.32 5.03
2507 2608 0.456221 ACATCTGGGTAGAACGCTCG 59.544 55.000 0.00 0.00 36.32 5.03
2508 2609 0.249073 CATCTGGGTAGAACGCTCGG 60.249 60.000 0.00 0.00 36.32 4.63
2509 2610 0.683504 ATCTGGGTAGAACGCTCGGT 60.684 55.000 0.00 0.00 36.32 4.69
2510 2611 1.139095 CTGGGTAGAACGCTCGGTC 59.861 63.158 0.00 0.00 31.67 4.79
2511 2612 1.592400 CTGGGTAGAACGCTCGGTCA 61.592 60.000 10.11 0.00 33.52 4.02
2512 2613 0.968901 TGGGTAGAACGCTCGGTCAT 60.969 55.000 10.11 0.00 33.52 3.06
2513 2614 0.248949 GGGTAGAACGCTCGGTCATC 60.249 60.000 10.11 2.18 33.52 2.92
2514 2615 0.591741 GGTAGAACGCTCGGTCATCG 60.592 60.000 10.11 0.00 40.90 3.84
2515 2616 0.098376 GTAGAACGCTCGGTCATCGT 59.902 55.000 10.11 0.00 40.32 3.73
2516 2617 0.376152 TAGAACGCTCGGTCATCGTC 59.624 55.000 10.11 0.00 40.32 4.20
2517 2618 1.136984 GAACGCTCGGTCATCGTCT 59.863 57.895 2.04 0.00 40.32 4.18
2518 2619 1.134530 GAACGCTCGGTCATCGTCTG 61.135 60.000 2.04 0.00 40.32 3.51
2519 2620 2.278206 CGCTCGGTCATCGTCTGG 60.278 66.667 0.00 0.00 40.32 3.86
2520 2621 2.885861 GCTCGGTCATCGTCTGGT 59.114 61.111 0.00 0.00 40.32 4.00
2521 2622 1.226717 GCTCGGTCATCGTCTGGTC 60.227 63.158 0.00 0.00 40.32 4.02
2522 2623 1.934220 GCTCGGTCATCGTCTGGTCA 61.934 60.000 0.00 0.00 40.32 4.02
2523 2624 0.526211 CTCGGTCATCGTCTGGTCAA 59.474 55.000 0.00 0.00 40.32 3.18
2524 2625 0.963225 TCGGTCATCGTCTGGTCAAA 59.037 50.000 0.00 0.00 40.32 2.69
2525 2626 1.341852 TCGGTCATCGTCTGGTCAAAA 59.658 47.619 0.00 0.00 40.32 2.44
2526 2627 2.139917 CGGTCATCGTCTGGTCAAAAA 58.860 47.619 0.00 0.00 0.00 1.94
2546 2647 6.840780 AAAAATTTCGATTCAGATGGGTCT 57.159 33.333 0.00 0.00 34.14 3.85
2554 2655 3.729356 CAGATGGGTCTGTCAGACG 57.271 57.895 23.48 7.73 45.96 4.18
2555 2656 1.177401 CAGATGGGTCTGTCAGACGA 58.823 55.000 23.48 14.61 45.96 4.20
2556 2657 1.135257 CAGATGGGTCTGTCAGACGAC 60.135 57.143 23.48 19.22 45.96 4.34
2557 2658 0.173708 GATGGGTCTGTCAGACGACC 59.826 60.000 24.93 24.93 45.96 4.79
2559 2660 4.098847 GGTCTGTCAGACGACCCT 57.901 61.111 23.48 0.00 45.96 4.34
2560 2661 1.884444 GGTCTGTCAGACGACCCTC 59.116 63.158 23.48 7.73 45.96 4.30
2561 2662 0.894184 GGTCTGTCAGACGACCCTCA 60.894 60.000 23.48 0.00 45.96 3.86
2562 2663 0.959553 GTCTGTCAGACGACCCTCAA 59.040 55.000 17.00 0.00 41.85 3.02
2563 2664 1.340248 GTCTGTCAGACGACCCTCAAA 59.660 52.381 17.00 0.00 41.85 2.69
2564 2665 2.028930 GTCTGTCAGACGACCCTCAAAT 60.029 50.000 17.00 0.00 41.85 2.32
2565 2666 2.029020 TCTGTCAGACGACCCTCAAATG 60.029 50.000 0.00 0.00 41.85 2.32
2566 2667 1.079503 GTCAGACGACCCTCAAATGC 58.920 55.000 0.00 0.00 36.02 3.56
2567 2668 0.976641 TCAGACGACCCTCAAATGCT 59.023 50.000 0.00 0.00 0.00 3.79
2568 2669 1.347707 TCAGACGACCCTCAAATGCTT 59.652 47.619 0.00 0.00 0.00 3.91
2569 2670 1.466167 CAGACGACCCTCAAATGCTTG 59.534 52.381 0.00 0.00 0.00 4.01
2570 2671 0.804989 GACGACCCTCAAATGCTTGG 59.195 55.000 0.00 0.00 33.01 3.61
2571 2672 0.609131 ACGACCCTCAAATGCTTGGG 60.609 55.000 0.00 0.00 44.89 4.12
2575 2676 0.609662 CCCTCAAATGCTTGGGTTGG 59.390 55.000 0.00 0.00 35.13 3.77
2576 2677 0.037046 CCTCAAATGCTTGGGTTGGC 60.037 55.000 0.00 0.00 30.21 4.52
2577 2678 0.037046 CTCAAATGCTTGGGTTGGCC 60.037 55.000 0.00 0.00 33.01 5.36
2578 2679 1.374505 CAAATGCTTGGGTTGGCCG 60.375 57.895 0.00 0.00 34.97 6.13
2579 2680 1.532794 AAATGCTTGGGTTGGCCGA 60.533 52.632 0.00 0.00 34.97 5.54
2580 2681 1.815817 AAATGCTTGGGTTGGCCGAC 61.816 55.000 15.51 15.51 34.97 4.79
2581 2682 2.992817 AATGCTTGGGTTGGCCGACA 62.993 55.000 24.82 1.87 34.97 4.35
2582 2683 2.676471 GCTTGGGTTGGCCGACAT 60.676 61.111 24.82 0.00 34.97 3.06
2583 2684 2.700773 GCTTGGGTTGGCCGACATC 61.701 63.158 24.82 15.85 34.97 3.06
2584 2685 2.034999 TTGGGTTGGCCGACATCC 59.965 61.111 24.82 17.32 38.08 3.51
2585 2686 2.484287 CTTGGGTTGGCCGACATCCT 62.484 60.000 24.82 0.00 38.70 3.24
2586 2687 2.124695 GGGTTGGCCGACATCCTC 60.125 66.667 24.82 6.62 38.70 3.71
2587 2688 2.124695 GGTTGGCCGACATCCTCC 60.125 66.667 24.82 2.06 36.26 4.30
2588 2689 2.668632 GTTGGCCGACATCCTCCA 59.331 61.111 18.96 0.00 0.00 3.86
2589 2690 1.224592 GTTGGCCGACATCCTCCAT 59.775 57.895 18.96 0.00 0.00 3.41
2590 2691 0.468226 GTTGGCCGACATCCTCCATA 59.532 55.000 18.96 0.00 0.00 2.74
2591 2692 1.072331 GTTGGCCGACATCCTCCATAT 59.928 52.381 18.96 0.00 0.00 1.78
2592 2693 0.976641 TGGCCGACATCCTCCATATC 59.023 55.000 0.00 0.00 0.00 1.63
2593 2694 1.270907 GGCCGACATCCTCCATATCT 58.729 55.000 0.00 0.00 0.00 1.98
2594 2695 2.225267 TGGCCGACATCCTCCATATCTA 60.225 50.000 0.00 0.00 0.00 1.98
2595 2696 2.428890 GGCCGACATCCTCCATATCTAG 59.571 54.545 0.00 0.00 0.00 2.43
2596 2697 2.159170 GCCGACATCCTCCATATCTAGC 60.159 54.545 0.00 0.00 0.00 3.42
2597 2698 2.428890 CCGACATCCTCCATATCTAGCC 59.571 54.545 0.00 0.00 0.00 3.93
2598 2699 2.428890 CGACATCCTCCATATCTAGCCC 59.571 54.545 0.00 0.00 0.00 5.19
2599 2700 3.445008 GACATCCTCCATATCTAGCCCA 58.555 50.000 0.00 0.00 0.00 5.36
2600 2701 3.840666 GACATCCTCCATATCTAGCCCAA 59.159 47.826 0.00 0.00 0.00 4.12
2601 2702 4.242811 ACATCCTCCATATCTAGCCCAAA 58.757 43.478 0.00 0.00 0.00 3.28
2602 2703 4.042187 ACATCCTCCATATCTAGCCCAAAC 59.958 45.833 0.00 0.00 0.00 2.93
2603 2704 3.664320 TCCTCCATATCTAGCCCAAACA 58.336 45.455 0.00 0.00 0.00 2.83
2604 2705 4.242811 TCCTCCATATCTAGCCCAAACAT 58.757 43.478 0.00 0.00 0.00 2.71
2605 2706 4.042062 TCCTCCATATCTAGCCCAAACATG 59.958 45.833 0.00 0.00 0.00 3.21
2606 2707 4.042062 CCTCCATATCTAGCCCAAACATGA 59.958 45.833 0.00 0.00 0.00 3.07
2607 2708 5.233083 TCCATATCTAGCCCAAACATGAG 57.767 43.478 0.00 0.00 0.00 2.90
2608 2709 4.042062 TCCATATCTAGCCCAAACATGAGG 59.958 45.833 0.00 0.00 0.00 3.86
2612 2713 4.421365 GCCCAAACATGAGGCAGA 57.579 55.556 0.00 0.00 46.34 4.26
2613 2714 1.885871 GCCCAAACATGAGGCAGAC 59.114 57.895 0.00 0.00 46.34 3.51
2614 2715 0.895100 GCCCAAACATGAGGCAGACA 60.895 55.000 0.00 0.00 46.34 3.41
2615 2716 1.843368 CCCAAACATGAGGCAGACAT 58.157 50.000 0.00 0.00 0.00 3.06
2616 2717 1.475280 CCCAAACATGAGGCAGACATG 59.525 52.381 0.00 14.40 46.96 3.21
2617 2718 2.439409 CCAAACATGAGGCAGACATGA 58.561 47.619 20.05 0.00 45.22 3.07
2618 2719 2.821378 CCAAACATGAGGCAGACATGAA 59.179 45.455 20.05 0.00 45.22 2.57
2619 2720 3.119602 CCAAACATGAGGCAGACATGAAG 60.120 47.826 20.05 11.68 45.22 3.02
2620 2721 2.414994 ACATGAGGCAGACATGAAGG 57.585 50.000 20.05 0.00 45.22 3.46
2621 2722 1.022735 CATGAGGCAGACATGAAGGC 58.977 55.000 0.00 0.59 45.22 4.35
2622 2723 0.463295 ATGAGGCAGACATGAAGGCG 60.463 55.000 0.00 0.00 0.00 5.52
2623 2724 1.078848 GAGGCAGACATGAAGGCGT 60.079 57.895 0.00 0.59 0.00 5.68
2624 2725 1.078848 AGGCAGACATGAAGGCGTC 60.079 57.895 0.00 0.00 0.00 5.19
2625 2726 2.109126 GGCAGACATGAAGGCGTCC 61.109 63.158 0.00 0.00 32.33 4.79
2626 2727 2.456119 GCAGACATGAAGGCGTCCG 61.456 63.158 0.00 0.00 32.33 4.79
2627 2728 1.811266 CAGACATGAAGGCGTCCGG 60.811 63.158 0.00 0.00 32.33 5.14
2628 2729 2.511600 GACATGAAGGCGTCCGGG 60.512 66.667 0.00 0.00 0.00 5.73
2629 2730 4.778143 ACATGAAGGCGTCCGGGC 62.778 66.667 0.00 0.00 42.69 6.13
2630 2731 4.776322 CATGAAGGCGTCCGGGCA 62.776 66.667 6.96 0.00 45.36 5.36
2631 2732 4.778143 ATGAAGGCGTCCGGGCAC 62.778 66.667 6.96 0.00 45.36 5.01
2663 2764 3.068881 CCTGACGAAGGGGCTTCA 58.931 61.111 0.00 0.00 43.15 3.02
2664 2765 1.376037 CCTGACGAAGGGGCTTCAC 60.376 63.158 0.00 0.00 43.15 3.18
2665 2766 1.371183 CTGACGAAGGGGCTTCACA 59.629 57.895 0.00 0.00 40.17 3.58
2666 2767 0.951040 CTGACGAAGGGGCTTCACAC 60.951 60.000 0.00 0.00 40.17 3.82
2667 2768 2.027625 GACGAAGGGGCTTCACACG 61.028 63.158 0.00 0.00 40.17 4.49
2668 2769 2.342279 CGAAGGGGCTTCACACGA 59.658 61.111 0.00 0.00 40.17 4.35
2669 2770 1.301401 CGAAGGGGCTTCACACGAA 60.301 57.895 0.00 0.00 40.17 3.85
2670 2771 0.882927 CGAAGGGGCTTCACACGAAA 60.883 55.000 0.00 0.00 40.17 3.46
2671 2772 1.314730 GAAGGGGCTTCACACGAAAA 58.685 50.000 0.00 0.00 39.95 2.29
2672 2773 1.886542 GAAGGGGCTTCACACGAAAAT 59.113 47.619 0.00 0.00 39.95 1.82
2673 2774 1.247567 AGGGGCTTCACACGAAAATG 58.752 50.000 0.00 0.00 0.00 2.32
2674 2775 0.388520 GGGGCTTCACACGAAAATGC 60.389 55.000 0.00 0.00 0.00 3.56
2675 2776 0.388520 GGGCTTCACACGAAAATGCC 60.389 55.000 0.00 0.00 38.60 4.40
2676 2777 0.388520 GGCTTCACACGAAAATGCCC 60.389 55.000 0.00 0.00 35.13 5.36
2677 2778 0.729140 GCTTCACACGAAAATGCCCG 60.729 55.000 0.00 0.00 0.00 6.13
2678 2779 0.871722 CTTCACACGAAAATGCCCGA 59.128 50.000 0.00 0.00 0.00 5.14
2679 2780 1.265635 CTTCACACGAAAATGCCCGAA 59.734 47.619 0.00 0.00 0.00 4.30
2680 2781 1.309950 TCACACGAAAATGCCCGAAA 58.690 45.000 0.00 0.00 0.00 3.46
2681 2782 1.676529 TCACACGAAAATGCCCGAAAA 59.323 42.857 0.00 0.00 0.00 2.29
2682 2783 1.784283 CACACGAAAATGCCCGAAAAC 59.216 47.619 0.00 0.00 0.00 2.43
2683 2784 1.269361 ACACGAAAATGCCCGAAAACC 60.269 47.619 0.00 0.00 0.00 3.27
2684 2785 0.315886 ACGAAAATGCCCGAAAACCC 59.684 50.000 0.00 0.00 0.00 4.11
2685 2786 0.731174 CGAAAATGCCCGAAAACCCG 60.731 55.000 0.00 0.00 0.00 5.28
2686 2787 0.599060 GAAAATGCCCGAAAACCCGA 59.401 50.000 0.00 0.00 0.00 5.14
2687 2788 1.203758 GAAAATGCCCGAAAACCCGAT 59.796 47.619 0.00 0.00 0.00 4.18
2688 2789 0.530288 AAATGCCCGAAAACCCGATG 59.470 50.000 0.00 0.00 0.00 3.84
2689 2790 1.319614 AATGCCCGAAAACCCGATGG 61.320 55.000 0.00 0.00 37.80 3.51
2698 2799 4.887957 ACCCGATGGTCTGAAGGA 57.112 55.556 0.00 0.00 43.06 3.36
2699 2800 2.287829 ACCCGATGGTCTGAAGGAC 58.712 57.895 0.00 0.00 43.06 3.85
2700 2801 1.141881 CCCGATGGTCTGAAGGACG 59.858 63.158 0.00 0.00 45.35 4.79
2701 2802 1.519455 CCGATGGTCTGAAGGACGC 60.519 63.158 0.00 0.00 45.35 5.19
2702 2803 1.519455 CGATGGTCTGAAGGACGCC 60.519 63.158 0.00 0.00 45.35 5.68
2703 2804 1.519455 GATGGTCTGAAGGACGCCG 60.519 63.158 0.00 0.00 45.35 6.46
2704 2805 3.665675 ATGGTCTGAAGGACGCCGC 62.666 63.158 0.00 0.00 45.35 6.53
2706 2807 4.719369 GTCTGAAGGACGCCGCGT 62.719 66.667 20.31 20.31 45.10 6.01
2707 2808 4.717629 TCTGAAGGACGCCGCGTG 62.718 66.667 25.60 7.81 41.37 5.34
2727 2828 4.681978 GCTGTCCCGGCTTGTCGT 62.682 66.667 0.00 0.00 32.24 4.34
2728 2829 2.432628 CTGTCCCGGCTTGTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
2729 2830 3.934391 CTGTCCCGGCTTGTCGTCC 62.934 68.421 0.00 0.00 0.00 4.79
2730 2831 3.998672 GTCCCGGCTTGTCGTCCA 61.999 66.667 0.00 0.00 0.00 4.02
2731 2832 3.235481 TCCCGGCTTGTCGTCCAA 61.235 61.111 0.00 0.00 0.00 3.53
2742 2843 2.139917 TGTCGTCCAAGACAAAATCCG 58.860 47.619 0.00 0.00 46.81 4.18
2743 2844 1.463444 GTCGTCCAAGACAAAATCCGG 59.537 52.381 0.00 0.00 40.65 5.14
2744 2845 0.168128 CGTCCAAGACAAAATCCGGC 59.832 55.000 0.00 0.00 32.09 6.13
2745 2846 1.534729 GTCCAAGACAAAATCCGGCT 58.465 50.000 0.00 0.00 32.09 5.52
2746 2847 2.706890 GTCCAAGACAAAATCCGGCTA 58.293 47.619 0.00 0.00 32.09 3.93
2747 2848 3.279434 GTCCAAGACAAAATCCGGCTAT 58.721 45.455 0.00 0.00 32.09 2.97
2748 2849 3.694566 GTCCAAGACAAAATCCGGCTATT 59.305 43.478 0.00 0.00 32.09 1.73
2749 2850 4.157840 GTCCAAGACAAAATCCGGCTATTT 59.842 41.667 0.00 0.00 32.09 1.40
2750 2851 5.355910 GTCCAAGACAAAATCCGGCTATTTA 59.644 40.000 0.00 0.00 32.09 1.40
2751 2852 5.946972 TCCAAGACAAAATCCGGCTATTTAA 59.053 36.000 0.00 0.00 0.00 1.52
2752 2853 6.094881 TCCAAGACAAAATCCGGCTATTTAAG 59.905 38.462 0.00 0.00 0.00 1.85
2760 2861 3.340789 GCTATTTAAGCCGGCCGG 58.659 61.111 40.26 40.26 46.25 6.13
2761 2862 1.525306 GCTATTTAAGCCGGCCGGT 60.525 57.895 42.53 28.17 46.25 5.28
2762 2863 1.782028 GCTATTTAAGCCGGCCGGTG 61.782 60.000 42.53 21.58 46.25 4.94
2763 2864 0.463116 CTATTTAAGCCGGCCGGTGT 60.463 55.000 42.53 32.01 37.65 4.16
2764 2865 0.462403 TATTTAAGCCGGCCGGTGTC 60.462 55.000 42.53 27.63 37.65 3.67
2765 2866 3.781432 TATTTAAGCCGGCCGGTGTCC 62.781 57.143 42.53 27.25 37.65 4.02
2776 2877 2.751688 GGTGTCCCGCAACCCTAA 59.248 61.111 0.00 0.00 0.00 2.69
2777 2878 1.673337 GGTGTCCCGCAACCCTAAC 60.673 63.158 0.00 0.00 0.00 2.34
2778 2879 1.673337 GTGTCCCGCAACCCTAACC 60.673 63.158 0.00 0.00 0.00 2.85
2779 2880 2.045634 GTCCCGCAACCCTAACCC 60.046 66.667 0.00 0.00 0.00 4.11
2780 2881 2.529643 TCCCGCAACCCTAACCCA 60.530 61.111 0.00 0.00 0.00 4.51
2781 2882 1.926489 TCCCGCAACCCTAACCCAT 60.926 57.895 0.00 0.00 0.00 4.00
2782 2883 1.453197 CCCGCAACCCTAACCCATC 60.453 63.158 0.00 0.00 0.00 3.51
2783 2884 1.453197 CCGCAACCCTAACCCATCC 60.453 63.158 0.00 0.00 0.00 3.51
2784 2885 1.453197 CGCAACCCTAACCCATCCC 60.453 63.158 0.00 0.00 0.00 3.85
2785 2886 1.076265 GCAACCCTAACCCATCCCC 60.076 63.158 0.00 0.00 0.00 4.81
2786 2887 1.618586 CAACCCTAACCCATCCCCC 59.381 63.158 0.00 0.00 0.00 5.40
2787 2888 0.924226 CAACCCTAACCCATCCCCCT 60.924 60.000 0.00 0.00 0.00 4.79
2788 2889 0.178782 AACCCTAACCCATCCCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
2789 2890 0.626574 ACCCTAACCCATCCCCCTTC 60.627 60.000 0.00 0.00 0.00 3.46
2790 2891 0.328548 CCCTAACCCATCCCCCTTCT 60.329 60.000 0.00 0.00 0.00 2.85
2791 2892 1.141185 CCTAACCCATCCCCCTTCTC 58.859 60.000 0.00 0.00 0.00 2.87
2792 2893 1.141185 CTAACCCATCCCCCTTCTCC 58.859 60.000 0.00 0.00 0.00 3.71
2793 2894 0.328158 TAACCCATCCCCCTTCTCCC 60.328 60.000 0.00 0.00 0.00 4.30
2794 2895 2.778717 CCCATCCCCCTTCTCCCC 60.779 72.222 0.00 0.00 0.00 4.81
2795 2896 2.378522 CCATCCCCCTTCTCCCCT 59.621 66.667 0.00 0.00 0.00 4.79
2796 2897 1.772156 CCATCCCCCTTCTCCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
2797 2898 1.319799 CATCCCCCTTCTCCCCTCT 59.680 63.158 0.00 0.00 0.00 3.69
2798 2899 0.766288 CATCCCCCTTCTCCCCTCTC 60.766 65.000 0.00 0.00 0.00 3.20
2799 2900 1.979389 ATCCCCCTTCTCCCCTCTCC 61.979 65.000 0.00 0.00 0.00 3.71
2800 2901 2.444895 CCCCTTCTCCCCTCTCCG 60.445 72.222 0.00 0.00 0.00 4.63
2801 2902 3.157949 CCCTTCTCCCCTCTCCGC 61.158 72.222 0.00 0.00 0.00 5.54
2802 2903 3.532155 CCTTCTCCCCTCTCCGCG 61.532 72.222 0.00 0.00 0.00 6.46
2803 2904 4.214327 CTTCTCCCCTCTCCGCGC 62.214 72.222 0.00 0.00 0.00 6.86
2821 2922 4.899239 CGCCAGTCCGAGCCCATC 62.899 72.222 0.00 0.00 0.00 3.51
2822 2923 4.554036 GCCAGTCCGAGCCCATCC 62.554 72.222 0.00 0.00 0.00 3.51
2823 2924 4.227134 CCAGTCCGAGCCCATCCG 62.227 72.222 0.00 0.00 0.00 4.18
2824 2925 4.899239 CAGTCCGAGCCCATCCGC 62.899 72.222 0.00 0.00 0.00 5.54
2830 2931 3.934962 GAGCCCATCCGCCTCCTC 61.935 72.222 0.00 0.00 0.00 3.71
2833 2934 4.888325 CCCATCCGCCTCCTCCCT 62.888 72.222 0.00 0.00 0.00 4.20
2834 2935 3.237741 CCATCCGCCTCCTCCCTC 61.238 72.222 0.00 0.00 0.00 4.30
2835 2936 2.123077 CATCCGCCTCCTCCCTCT 60.123 66.667 0.00 0.00 0.00 3.69
2836 2937 2.200092 ATCCGCCTCCTCCCTCTC 59.800 66.667 0.00 0.00 0.00 3.20
2837 2938 3.460478 ATCCGCCTCCTCCCTCTCC 62.460 68.421 0.00 0.00 0.00 3.71
2841 2942 4.150454 CCTCCTCCCTCTCCCGCT 62.150 72.222 0.00 0.00 0.00 5.52
2842 2943 2.520741 CTCCTCCCTCTCCCGCTC 60.521 72.222 0.00 0.00 0.00 5.03
2843 2944 4.144727 TCCTCCCTCTCCCGCTCC 62.145 72.222 0.00 0.00 0.00 4.70
2870 2971 2.747855 CCCAAGCTCCGGCACTTC 60.748 66.667 0.00 0.00 41.70 3.01
2871 2972 3.121030 CCAAGCTCCGGCACTTCG 61.121 66.667 0.00 0.00 41.70 3.79
2872 2973 3.793144 CAAGCTCCGGCACTTCGC 61.793 66.667 0.00 0.00 41.70 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.925630 ATTGGGCCAGGTCAGCACG 62.926 63.158 6.23 0.00 36.00 5.34
40 41 2.036256 ATTGGGCCAGGTCAGCAC 59.964 61.111 6.23 0.00 0.00 4.40
41 42 2.356278 GATTGGGCCAGGTCAGCA 59.644 61.111 6.23 0.00 0.00 4.41
42 43 1.751927 CTGATTGGGCCAGGTCAGC 60.752 63.158 27.35 10.52 32.62 4.26
43 44 0.107312 CTCTGATTGGGCCAGGTCAG 60.107 60.000 30.27 30.27 39.47 3.51
44 45 1.565390 CCTCTGATTGGGCCAGGTCA 61.565 60.000 18.83 18.83 32.73 4.02
45 46 1.225704 CCTCTGATTGGGCCAGGTC 59.774 63.158 6.23 10.20 32.73 3.85
46 47 2.988839 GCCTCTGATTGGGCCAGGT 61.989 63.158 6.23 0.00 42.30 4.00
47 48 2.123982 GCCTCTGATTGGGCCAGG 60.124 66.667 6.23 4.33 42.30 4.45
48 49 2.335092 ATCGCCTCTGATTGGGCCAG 62.335 60.000 6.23 0.00 45.01 4.85
49 50 2.329539 GATCGCCTCTGATTGGGCCA 62.330 60.000 0.00 0.00 45.01 5.36
50 51 1.599240 GATCGCCTCTGATTGGGCC 60.599 63.158 0.00 0.00 45.01 5.80
51 52 1.958205 CGATCGCCTCTGATTGGGC 60.958 63.158 0.26 0.00 44.43 5.36
52 53 1.958205 GCGATCGCCTCTGATTGGG 60.958 63.158 29.48 0.00 31.51 4.12
53 54 3.635204 GCGATCGCCTCTGATTGG 58.365 61.111 29.48 0.00 31.51 3.16
64 65 4.271816 CTGGAGGACGGGCGATCG 62.272 72.222 11.69 11.69 0.00 3.69
65 66 4.593864 GCTGGAGGACGGGCGATC 62.594 72.222 0.00 0.00 0.00 3.69
108 109 2.549611 ATCTCTCCACGCACTGTCGC 62.550 60.000 0.00 0.00 0.00 5.19
109 110 0.799917 CATCTCTCCACGCACTGTCG 60.800 60.000 0.00 0.00 0.00 4.35
110 111 1.080995 GCATCTCTCCACGCACTGTC 61.081 60.000 0.00 0.00 0.00 3.51
111 112 1.079543 GCATCTCTCCACGCACTGT 60.080 57.895 0.00 0.00 0.00 3.55
112 113 1.812922 GGCATCTCTCCACGCACTG 60.813 63.158 0.00 0.00 0.00 3.66
113 114 2.581354 GGCATCTCTCCACGCACT 59.419 61.111 0.00 0.00 0.00 4.40
114 115 2.887568 CGGCATCTCTCCACGCAC 60.888 66.667 0.00 0.00 0.00 5.34
128 129 1.160329 GGATATGGATATGCCGCGGC 61.160 60.000 42.35 42.35 40.66 6.53
129 130 0.532862 GGGATATGGATATGCCGCGG 60.533 60.000 24.05 24.05 40.64 6.46
130 131 2.992089 GGGATATGGATATGCCGCG 58.008 57.895 0.00 0.00 40.64 6.46
133 134 0.179018 GGGCGGGATATGGATATGCC 60.179 60.000 7.04 7.04 44.85 4.40
134 135 0.179018 GGGGCGGGATATGGATATGC 60.179 60.000 0.00 0.00 0.00 3.14
135 136 0.106708 CGGGGCGGGATATGGATATG 59.893 60.000 0.00 0.00 0.00 1.78
136 137 1.696097 GCGGGGCGGGATATGGATAT 61.696 60.000 0.00 0.00 0.00 1.63
137 138 2.363975 GCGGGGCGGGATATGGATA 61.364 63.158 0.00 0.00 0.00 2.59
138 139 3.717294 GCGGGGCGGGATATGGAT 61.717 66.667 0.00 0.00 0.00 3.41
157 158 2.025155 CAGGATATACCCGATCCGAGG 58.975 57.143 0.00 0.00 46.49 4.63
158 159 1.405821 GCAGGATATACCCGATCCGAG 59.594 57.143 0.00 0.00 46.49 4.63
159 160 1.471119 GCAGGATATACCCGATCCGA 58.529 55.000 0.00 0.00 46.49 4.55
160 161 0.100682 CGCAGGATATACCCGATCCG 59.899 60.000 0.00 0.00 46.49 4.18
161 162 0.179108 GCGCAGGATATACCCGATCC 60.179 60.000 0.30 0.00 42.91 3.36
162 163 0.818296 AGCGCAGGATATACCCGATC 59.182 55.000 11.47 0.00 40.05 3.69
163 164 0.532573 CAGCGCAGGATATACCCGAT 59.467 55.000 11.47 0.00 40.05 4.18
164 165 1.532604 CCAGCGCAGGATATACCCGA 61.533 60.000 14.67 0.00 40.05 5.14
165 166 1.079819 CCAGCGCAGGATATACCCG 60.080 63.158 14.67 0.00 40.05 5.28
166 167 1.376037 GCCAGCGCAGGATATACCC 60.376 63.158 24.63 0.00 40.05 3.69
167 168 0.671781 CAGCCAGCGCAGGATATACC 60.672 60.000 24.63 3.15 37.52 2.73
168 169 1.294659 GCAGCCAGCGCAGGATATAC 61.295 60.000 24.63 5.57 37.52 1.47
169 170 1.004560 GCAGCCAGCGCAGGATATA 60.005 57.895 24.63 0.00 37.52 0.86
170 171 2.281345 GCAGCCAGCGCAGGATAT 60.281 61.111 24.63 4.27 37.52 1.63
179 180 0.322648 AAAAGAATTGGGCAGCCAGC 59.677 50.000 15.19 0.00 44.65 4.85
180 181 1.619827 TCAAAAGAATTGGGCAGCCAG 59.380 47.619 15.19 0.00 0.00 4.85
181 182 1.619827 CTCAAAAGAATTGGGCAGCCA 59.380 47.619 15.19 0.00 0.00 4.75
182 183 1.066645 CCTCAAAAGAATTGGGCAGCC 60.067 52.381 1.26 1.26 0.00 4.85
183 184 1.895131 TCCTCAAAAGAATTGGGCAGC 59.105 47.619 0.00 0.00 0.00 5.25
184 185 2.095059 CGTCCTCAAAAGAATTGGGCAG 60.095 50.000 0.00 0.00 0.00 4.85
185 186 1.885887 CGTCCTCAAAAGAATTGGGCA 59.114 47.619 0.00 0.00 0.00 5.36
186 187 1.202348 CCGTCCTCAAAAGAATTGGGC 59.798 52.381 0.00 0.00 0.00 5.36
187 188 1.818674 CCCGTCCTCAAAAGAATTGGG 59.181 52.381 0.00 0.00 0.00 4.12
211 212 3.360340 GAGTGCCCTGTGCTGTGC 61.360 66.667 0.00 0.00 42.00 4.57
212 213 3.046087 CGAGTGCCCTGTGCTGTG 61.046 66.667 0.00 0.00 42.00 3.66
213 214 3.550431 ACGAGTGCCCTGTGCTGT 61.550 61.111 0.00 0.00 42.00 4.40
214 215 2.994387 TTCACGAGTGCCCTGTGCTG 62.994 60.000 0.00 0.00 42.00 4.41
215 216 2.324014 TTTCACGAGTGCCCTGTGCT 62.324 55.000 0.00 0.00 42.00 4.40
216 217 1.845809 CTTTCACGAGTGCCCTGTGC 61.846 60.000 0.00 0.00 41.77 4.57
236 237 3.175109 ACGTCTCCTCGTTGAAACTTT 57.825 42.857 0.00 0.00 41.37 2.66
237 238 2.884894 ACGTCTCCTCGTTGAAACTT 57.115 45.000 0.00 0.00 41.37 2.66
247 248 0.179108 ATTAGCCGCAACGTCTCCTC 60.179 55.000 0.00 0.00 0.00 3.71
250 251 0.801067 ACGATTAGCCGCAACGTCTC 60.801 55.000 0.00 0.00 31.69 3.36
270 271 1.271379 TGGTACTAGCATATTCGCCGG 59.729 52.381 0.00 0.00 0.00 6.13
271 272 2.325761 GTGGTACTAGCATATTCGCCG 58.674 52.381 0.00 0.00 0.00 6.46
272 273 2.612221 GGGTGGTACTAGCATATTCGCC 60.612 54.545 10.73 0.00 0.00 5.54
273 274 2.612221 GGGGTGGTACTAGCATATTCGC 60.612 54.545 10.73 0.00 0.00 4.70
284 285 2.219164 GGGTTCACGGGGTGGTACT 61.219 63.158 0.00 0.00 33.87 2.73
307 308 2.047179 GTGACCCTCCTTGACCGC 60.047 66.667 0.00 0.00 0.00 5.68
308 309 1.913762 AGGTGACCCTCCTTGACCG 60.914 63.158 0.00 0.00 35.62 4.79
327 328 3.105937 ACGAGCGTTTGAAAAGCTTTTC 58.894 40.909 34.85 34.85 45.13 2.29
332 333 2.729882 TCTAGACGAGCGTTTGAAAAGC 59.270 45.455 7.76 7.76 0.00 3.51
336 337 2.325761 GCTTCTAGACGAGCGTTTGAA 58.674 47.619 0.00 2.25 0.00 2.69
338 339 0.635731 CGCTTCTAGACGAGCGTTTG 59.364 55.000 24.31 3.40 44.50 2.93
339 340 3.017232 CGCTTCTAGACGAGCGTTT 57.983 52.632 24.31 0.00 44.50 3.60
347 348 0.588482 GTACCGCGTCGCTTCTAGAC 60.588 60.000 16.36 1.05 35.41 2.59
356 357 3.186001 AGATTATCAGTAGTACCGCGTCG 59.814 47.826 4.92 0.00 0.00 5.12
378 379 1.876799 CAGTGGTGGTAATTTGCGTCA 59.123 47.619 0.00 0.00 0.00 4.35
381 382 0.881118 AGCAGTGGTGGTAATTTGCG 59.119 50.000 0.00 0.00 36.70 4.85
392 393 0.532573 CTGGTCGTGATAGCAGTGGT 59.467 55.000 0.00 0.00 39.57 4.16
407 408 1.153823 CGATCGAGGAAACGCTGGT 60.154 57.895 10.26 0.00 0.00 4.00
431 432 5.583061 TTCATCGTTGAATACATGGTACACC 59.417 40.000 4.80 0.00 37.93 4.16
432 433 6.312918 ACTTCATCGTTGAATACATGGTACAC 59.687 38.462 9.26 0.00 40.81 2.90
433 434 6.403049 ACTTCATCGTTGAATACATGGTACA 58.597 36.000 9.26 0.00 41.76 2.90
434 435 6.903883 ACTTCATCGTTGAATACATGGTAC 57.096 37.500 9.26 0.00 40.95 3.34
436 437 7.412563 CGTTTACTTCATCGTTGAATACATGGT 60.413 37.037 9.26 5.76 40.95 3.55
437 438 6.899771 CGTTTACTTCATCGTTGAATACATGG 59.100 38.462 9.26 0.25 40.95 3.66
438 439 6.899771 CCGTTTACTTCATCGTTGAATACATG 59.100 38.462 9.26 0.00 40.95 3.21
440 441 6.157904 TCCGTTTACTTCATCGTTGAATACA 58.842 36.000 9.26 0.00 40.95 2.29
441 442 6.636666 TCCGTTTACTTCATCGTTGAATAC 57.363 37.500 9.26 5.48 40.95 1.89
442 443 7.512297 GTTTCCGTTTACTTCATCGTTGAATA 58.488 34.615 9.26 2.79 40.95 1.75
443 444 6.368213 GTTTCCGTTTACTTCATCGTTGAAT 58.632 36.000 9.26 3.62 40.95 2.57
489 497 0.099968 GAACACGTGGATCCGATCGA 59.900 55.000 21.57 2.91 0.00 3.59
491 499 1.560923 CTGAACACGTGGATCCGATC 58.439 55.000 21.57 0.00 0.00 3.69
514 522 4.673298 ATGGCGTGCCGTCGTGAA 62.673 61.111 6.37 0.00 39.42 3.18
520 528 4.673298 TTCGACATGGCGTGCCGT 62.673 61.111 22.59 2.48 39.42 5.68
521 529 4.147322 GTTCGACATGGCGTGCCG 62.147 66.667 22.59 9.25 39.42 5.69
522 530 3.799755 GGTTCGACATGGCGTGCC 61.800 66.667 22.59 19.69 0.00 5.01
524 532 1.425031 CATGGTTCGACATGGCGTG 59.575 57.895 22.59 7.57 43.44 5.34
525 533 3.889227 CATGGTTCGACATGGCGT 58.111 55.556 22.59 0.00 43.44 5.68
530 538 0.611200 TTCCGACCATGGTTCGACAT 59.389 50.000 27.55 3.62 0.00 3.06
541 565 1.541310 ATCGCTTCCAGTTCCGACCA 61.541 55.000 0.00 0.00 32.07 4.02
545 569 1.927174 CTGTTATCGCTTCCAGTTCCG 59.073 52.381 0.00 0.00 0.00 4.30
548 572 1.679032 GGCCTGTTATCGCTTCCAGTT 60.679 52.381 0.00 0.00 0.00 3.16
549 573 0.107654 GGCCTGTTATCGCTTCCAGT 60.108 55.000 0.00 0.00 0.00 4.00
553 577 2.545946 GAGAATGGCCTGTTATCGCTTC 59.454 50.000 3.32 0.00 0.00 3.86
557 581 4.065321 AGAAGAGAATGGCCTGTTATCG 57.935 45.455 3.32 0.00 0.00 2.92
558 582 5.755861 GTGTAGAAGAGAATGGCCTGTTATC 59.244 44.000 3.32 6.13 0.00 1.75
560 584 4.530553 TGTGTAGAAGAGAATGGCCTGTTA 59.469 41.667 3.32 0.00 0.00 2.41
563 587 3.616956 TGTGTAGAAGAGAATGGCCTG 57.383 47.619 3.32 0.00 0.00 4.85
564 588 3.521126 ACATGTGTAGAAGAGAATGGCCT 59.479 43.478 3.32 0.00 0.00 5.19
566 590 4.507710 TGACATGTGTAGAAGAGAATGGC 58.492 43.478 1.15 0.00 0.00 4.40
567 591 4.569966 GCTGACATGTGTAGAAGAGAATGG 59.430 45.833 1.15 0.00 0.00 3.16
569 593 4.223700 TGGCTGACATGTGTAGAAGAGAAT 59.776 41.667 1.15 0.00 0.00 2.40
578 614 2.566724 TGACTGATGGCTGACATGTGTA 59.433 45.455 1.15 0.00 40.72 2.90
582 618 3.275999 TGATTGACTGATGGCTGACATG 58.724 45.455 0.00 0.00 40.72 3.21
583 619 3.639672 TGATTGACTGATGGCTGACAT 57.360 42.857 0.00 0.00 44.18 3.06
602 638 2.246789 ACACGTTTGTTTGCGAGTTTG 58.753 42.857 0.00 0.00 28.43 2.93
603 639 2.622546 ACACGTTTGTTTGCGAGTTT 57.377 40.000 0.00 0.00 28.43 2.66
604 640 2.538132 GCTACACGTTTGTTTGCGAGTT 60.538 45.455 0.00 0.00 37.15 3.01
609 645 2.748461 TCAGCTACACGTTTGTTTGC 57.252 45.000 0.00 0.00 37.15 3.68
613 649 6.795098 TGAATTAATCAGCTACACGTTTGT 57.205 33.333 0.00 0.00 35.12 2.83
626 662 1.013596 CCCGCGCACTGAATTAATCA 58.986 50.000 8.75 0.00 36.38 2.57
627 663 0.307760 CCCCGCGCACTGAATTAATC 59.692 55.000 8.75 0.00 0.00 1.75
628 664 1.724582 GCCCCGCGCACTGAATTAAT 61.725 55.000 8.75 0.00 37.47 1.40
630 666 2.822255 GCCCCGCGCACTGAATTA 60.822 61.111 8.75 0.00 37.47 1.40
644 680 4.329545 TCACGTCCAAGCCTGCCC 62.330 66.667 0.00 0.00 0.00 5.36
645 681 2.167398 TAGTCACGTCCAAGCCTGCC 62.167 60.000 0.00 0.00 0.00 4.85
646 682 0.108138 ATAGTCACGTCCAAGCCTGC 60.108 55.000 0.00 0.00 0.00 4.85
647 683 2.386661 AATAGTCACGTCCAAGCCTG 57.613 50.000 0.00 0.00 0.00 4.85
648 684 3.074412 CAAAATAGTCACGTCCAAGCCT 58.926 45.455 0.00 0.00 0.00 4.58
649 685 2.161609 CCAAAATAGTCACGTCCAAGCC 59.838 50.000 0.00 0.00 0.00 4.35
650 686 2.161609 CCCAAAATAGTCACGTCCAAGC 59.838 50.000 0.00 0.00 0.00 4.01
651 687 2.161609 GCCCAAAATAGTCACGTCCAAG 59.838 50.000 0.00 0.00 0.00 3.61
687 723 1.889530 GCTACGAGGTTGTGGGAGCT 61.890 60.000 0.00 0.00 0.00 4.09
690 726 1.669440 GTGCTACGAGGTTGTGGGA 59.331 57.895 0.00 0.00 0.00 4.37
720 756 2.358737 GCCCGGGAATATGCTCCG 60.359 66.667 29.31 4.13 43.05 4.63
733 771 1.678101 GAGGGAATTGAATTGAGCCCG 59.322 52.381 7.32 0.00 40.50 6.13
745 783 2.044946 GCGGGCTGTGAGGGAATT 60.045 61.111 0.00 0.00 0.00 2.17
746 784 4.473520 CGCGGGCTGTGAGGGAAT 62.474 66.667 0.00 0.00 0.00 3.01
778 816 1.678360 CGCGGATTGATTAGCATTGC 58.322 50.000 0.00 0.00 0.00 3.56
784 822 0.861837 GTGAGGCGCGGATTGATTAG 59.138 55.000 8.83 0.00 0.00 1.73
799 837 1.993370 GTGCTTGCGTTAGTAGGTGAG 59.007 52.381 0.00 0.00 0.00 3.51
824 862 2.291465 GGTTTATTCGGCGGATTAACCC 59.709 50.000 29.76 16.59 34.64 4.11
925 963 1.279840 GTGTGCGTGAACTTGGAGC 59.720 57.895 0.00 0.00 0.00 4.70
926 964 0.304705 GTGTGTGCGTGAACTTGGAG 59.695 55.000 0.00 0.00 0.00 3.86
928 966 0.449786 TTGTGTGTGCGTGAACTTGG 59.550 50.000 0.00 0.00 0.00 3.61
932 970 0.865639 GGCTTTGTGTGTGCGTGAAC 60.866 55.000 0.00 0.00 0.00 3.18
933 971 1.431440 GGCTTTGTGTGTGCGTGAA 59.569 52.632 0.00 0.00 0.00 3.18
934 972 2.477176 GGGCTTTGTGTGTGCGTGA 61.477 57.895 0.00 0.00 0.00 4.35
935 973 2.026014 GGGCTTTGTGTGTGCGTG 59.974 61.111 0.00 0.00 0.00 5.34
936 974 2.439338 TGGGCTTTGTGTGTGCGT 60.439 55.556 0.00 0.00 0.00 5.24
982 1029 0.606401 ATGTCTGCCCTTTGTCGTGG 60.606 55.000 0.00 0.00 0.00 4.94
983 1030 0.518636 CATGTCTGCCCTTTGTCGTG 59.481 55.000 0.00 0.00 0.00 4.35
984 1031 0.606401 CCATGTCTGCCCTTTGTCGT 60.606 55.000 0.00 0.00 0.00 4.34
990 1037 3.650950 ACGGCCATGTCTGCCCTT 61.651 61.111 2.24 0.00 46.48 3.95
994 1041 0.744414 ATGTACACGGCCATGTCTGC 60.744 55.000 8.24 0.36 33.85 4.26
998 1045 1.153449 CGGATGTACACGGCCATGT 60.153 57.895 10.40 10.40 36.56 3.21
1798 1851 2.460330 GGCACTTGATGACGTCCAG 58.540 57.895 14.12 6.37 0.00 3.86
1886 1942 2.582436 GGGGACGCGGAGAATCAA 59.418 61.111 12.47 0.00 36.25 2.57
1899 1955 2.507854 GGCATCGATCTTCCGGGGA 61.508 63.158 0.00 0.16 0.00 4.81
1900 1956 2.031163 GGCATCGATCTTCCGGGG 59.969 66.667 0.00 0.00 0.00 5.73
1902 1958 1.546029 TCTATGGCATCGATCTTCCGG 59.454 52.381 1.65 0.00 0.00 5.14
1903 1959 3.185330 CATCTATGGCATCGATCTTCCG 58.815 50.000 11.22 0.00 0.00 4.30
1916 1972 7.041167 GGATCGATCATCTCTCTACATCTATGG 60.041 44.444 25.93 0.00 0.00 2.74
1952 2020 2.767505 ACAAGAAACGAATTCGAGGCT 58.232 42.857 33.05 21.41 43.15 4.58
1968 2036 9.965824 AATCTAGACCAAAATTGTTTGTACAAG 57.034 29.630 8.56 0.00 46.71 3.16
2001 2069 6.642540 GGAAGAACAATTCGCTCTTTTTCATT 59.357 34.615 0.00 0.00 30.02 2.57
2014 2082 5.472148 TGCATGTTGATGGAAGAACAATTC 58.528 37.500 0.00 0.00 35.76 2.17
2022 2090 3.562557 TCGATCATGCATGTTGATGGAAG 59.437 43.478 25.43 8.67 36.01 3.46
2023 2091 3.543665 TCGATCATGCATGTTGATGGAA 58.456 40.909 25.43 4.73 36.01 3.53
2030 2105 4.559153 TGACGATATCGATCATGCATGTT 58.441 39.130 30.75 18.03 43.02 2.71
2045 2120 2.346803 GCTGCTTCAAGGTTGACGATA 58.653 47.619 0.63 0.00 36.83 2.92
2071 2147 5.049405 CCAAGATCCATAGTTTAATCGTGCC 60.049 44.000 0.00 0.00 0.00 5.01
2072 2148 5.527582 ACCAAGATCCATAGTTTAATCGTGC 59.472 40.000 0.00 0.00 0.00 5.34
2105 2181 2.480802 TCTTTGCGCACGCTTTTATGTA 59.519 40.909 11.12 0.00 42.51 2.29
2113 2189 0.871722 TGTTAATCTTTGCGCACGCT 59.128 45.000 11.12 0.00 42.51 5.07
2129 2212 8.082242 CCCGTCTCTTTTAATTTTCATTCTGTT 58.918 33.333 0.00 0.00 0.00 3.16
2131 2214 7.816640 TCCCGTCTCTTTTAATTTTCATTCTG 58.183 34.615 0.00 0.00 0.00 3.02
2132 2215 7.996098 TCCCGTCTCTTTTAATTTTCATTCT 57.004 32.000 0.00 0.00 0.00 2.40
2133 2216 9.471084 TTTTCCCGTCTCTTTTAATTTTCATTC 57.529 29.630 0.00 0.00 0.00 2.67
2136 2219 7.430441 CCTTTTCCCGTCTCTTTTAATTTTCA 58.570 34.615 0.00 0.00 0.00 2.69
2137 2220 6.866770 CCCTTTTCCCGTCTCTTTTAATTTTC 59.133 38.462 0.00 0.00 0.00 2.29
2144 2227 2.488528 GGTCCCTTTTCCCGTCTCTTTT 60.489 50.000 0.00 0.00 0.00 2.27
2152 2235 0.039035 TTCCATGGTCCCTTTTCCCG 59.961 55.000 12.58 0.00 0.00 5.14
2153 2236 2.110578 CATTCCATGGTCCCTTTTCCC 58.889 52.381 12.58 0.00 0.00 3.97
2154 2237 2.110578 CCATTCCATGGTCCCTTTTCC 58.889 52.381 12.58 0.00 45.54 3.13
2208 2299 1.799258 GCCATCATTCGACCCATGCC 61.799 60.000 0.00 0.00 0.00 4.40
2247 2339 2.738521 CCGACAACCACCGCAGAG 60.739 66.667 0.00 0.00 0.00 3.35
2248 2340 4.980805 GCCGACAACCACCGCAGA 62.981 66.667 0.00 0.00 0.00 4.26
2253 2345 4.651008 TCGACGCCGACAACCACC 62.651 66.667 0.00 0.00 40.30 4.61
2267 2359 7.912773 CGGAGTATATTACTAGTACGATCTCGA 59.087 40.741 0.91 0.00 39.54 4.04
2281 2373 5.529791 TCTTGCTTGCTCGGAGTATATTAC 58.470 41.667 6.90 0.00 0.00 1.89
2284 2376 4.881019 ATCTTGCTTGCTCGGAGTATAT 57.119 40.909 6.90 0.00 0.00 0.86
2287 2379 3.384789 ACATATCTTGCTTGCTCGGAGTA 59.615 43.478 6.90 0.00 0.00 2.59
2293 2394 6.428385 ACACTAAACATATCTTGCTTGCTC 57.572 37.500 0.00 0.00 0.00 4.26
2351 2452 7.603297 CAAAAATTTGTACGAAAGATCACGT 57.397 32.000 14.61 14.61 44.72 4.49
2367 2468 5.583932 AGATCCTAGCCCAGACAAAAATTT 58.416 37.500 0.00 0.00 0.00 1.82
2369 2470 4.870021 AGATCCTAGCCCAGACAAAAAT 57.130 40.909 0.00 0.00 0.00 1.82
2370 2471 4.042809 TCAAGATCCTAGCCCAGACAAAAA 59.957 41.667 0.00 0.00 0.00 1.94
2383 2484 4.645535 GCCATGTGCTTATCAAGATCCTA 58.354 43.478 0.00 0.00 36.87 2.94
2390 2491 1.720894 CGCGCCATGTGCTTATCAA 59.279 52.632 0.00 0.00 36.86 2.57
2407 2508 2.100584 AGGCTGAAATGTAGAGAGAGCG 59.899 50.000 0.00 0.00 0.00 5.03
2408 2509 3.817709 AGGCTGAAATGTAGAGAGAGC 57.182 47.619 0.00 0.00 0.00 4.09
2409 2510 3.870419 GCAAGGCTGAAATGTAGAGAGAG 59.130 47.826 0.00 0.00 0.00 3.20
2410 2511 3.261643 TGCAAGGCTGAAATGTAGAGAGA 59.738 43.478 0.00 0.00 0.00 3.10
2411 2512 3.603532 TGCAAGGCTGAAATGTAGAGAG 58.396 45.455 0.00 0.00 0.00 3.20
2412 2513 3.701205 TGCAAGGCTGAAATGTAGAGA 57.299 42.857 0.00 0.00 0.00 3.10
2413 2514 4.022935 TGTTTGCAAGGCTGAAATGTAGAG 60.023 41.667 0.00 0.00 0.00 2.43
2414 2515 3.888323 TGTTTGCAAGGCTGAAATGTAGA 59.112 39.130 0.00 0.00 0.00 2.59
2415 2516 4.241590 TGTTTGCAAGGCTGAAATGTAG 57.758 40.909 0.00 0.00 0.00 2.74
2416 2517 4.619973 CTTGTTTGCAAGGCTGAAATGTA 58.380 39.130 0.00 0.00 46.17 2.29
2417 2518 3.460103 CTTGTTTGCAAGGCTGAAATGT 58.540 40.909 0.00 0.00 46.17 2.71
2426 2527 8.015658 GTACTTACTGTAATCTTGTTTGCAAGG 58.984 37.037 0.00 0.00 41.28 3.61
2427 2528 8.774586 AGTACTTACTGTAATCTTGTTTGCAAG 58.225 33.333 0.00 1.27 42.87 4.01
2428 2529 8.556194 CAGTACTTACTGTAATCTTGTTTGCAA 58.444 33.333 8.07 0.00 46.51 4.08
2429 2530 8.083462 CAGTACTTACTGTAATCTTGTTTGCA 57.917 34.615 8.07 0.00 46.51 4.08
2450 2551 3.693085 GAGGTCCGATTGTACACTCAGTA 59.307 47.826 13.03 0.00 0.00 2.74
2451 2552 2.492484 GAGGTCCGATTGTACACTCAGT 59.508 50.000 13.03 0.00 0.00 3.41
2452 2553 2.755655 AGAGGTCCGATTGTACACTCAG 59.244 50.000 13.03 2.36 0.00 3.35
2453 2554 2.753452 GAGAGGTCCGATTGTACACTCA 59.247 50.000 13.03 0.00 0.00 3.41
2454 2555 2.753452 TGAGAGGTCCGATTGTACACTC 59.247 50.000 0.00 0.00 0.00 3.51
2455 2556 2.803956 TGAGAGGTCCGATTGTACACT 58.196 47.619 0.00 0.00 0.00 3.55
2456 2557 3.587797 TTGAGAGGTCCGATTGTACAC 57.412 47.619 0.00 0.00 0.00 2.90
2457 2558 3.306502 GGTTTGAGAGGTCCGATTGTACA 60.307 47.826 0.00 0.00 0.00 2.90
2458 2559 3.259902 GGTTTGAGAGGTCCGATTGTAC 58.740 50.000 0.00 0.00 0.00 2.90
2459 2560 2.235402 GGGTTTGAGAGGTCCGATTGTA 59.765 50.000 0.00 0.00 0.00 2.41
2460 2561 1.003233 GGGTTTGAGAGGTCCGATTGT 59.997 52.381 0.00 0.00 0.00 2.71
2461 2562 1.739067 GGGTTTGAGAGGTCCGATTG 58.261 55.000 0.00 0.00 0.00 2.67
2462 2563 0.249398 CGGGTTTGAGAGGTCCGATT 59.751 55.000 0.00 0.00 42.94 3.34
2463 2564 0.903454 ACGGGTTTGAGAGGTCCGAT 60.903 55.000 7.07 0.00 42.94 4.18
2464 2565 1.530013 GACGGGTTTGAGAGGTCCGA 61.530 60.000 7.07 0.00 42.94 4.55
2465 2566 1.080025 GACGGGTTTGAGAGGTCCG 60.080 63.158 0.00 0.00 45.42 4.79
2466 2567 0.246910 GAGACGGGTTTGAGAGGTCC 59.753 60.000 0.00 0.00 0.00 4.46
2467 2568 0.966920 TGAGACGGGTTTGAGAGGTC 59.033 55.000 0.00 0.00 0.00 3.85
2468 2569 1.645710 ATGAGACGGGTTTGAGAGGT 58.354 50.000 0.00 0.00 0.00 3.85
2469 2570 2.496070 TGTATGAGACGGGTTTGAGAGG 59.504 50.000 0.00 0.00 0.00 3.69
2470 2571 3.868757 TGTATGAGACGGGTTTGAGAG 57.131 47.619 0.00 0.00 0.00 3.20
2471 2572 4.023980 AGATGTATGAGACGGGTTTGAGA 58.976 43.478 0.00 0.00 0.00 3.27
2472 2573 4.115516 CAGATGTATGAGACGGGTTTGAG 58.884 47.826 0.00 0.00 0.00 3.02
2473 2574 3.118775 CCAGATGTATGAGACGGGTTTGA 60.119 47.826 0.00 0.00 0.00 2.69
2474 2575 3.198068 CCAGATGTATGAGACGGGTTTG 58.802 50.000 0.00 0.00 0.00 2.93
2475 2576 2.170607 CCCAGATGTATGAGACGGGTTT 59.829 50.000 0.00 0.00 0.00 3.27
2476 2577 1.762957 CCCAGATGTATGAGACGGGTT 59.237 52.381 0.00 0.00 0.00 4.11
2477 2578 1.343075 ACCCAGATGTATGAGACGGGT 60.343 52.381 0.00 0.00 40.65 5.28
2478 2579 1.414158 ACCCAGATGTATGAGACGGG 58.586 55.000 0.00 0.00 38.23 5.28
2479 2580 3.487372 TCTACCCAGATGTATGAGACGG 58.513 50.000 0.00 0.00 0.00 4.79
2480 2581 4.554919 CGTTCTACCCAGATGTATGAGACG 60.555 50.000 0.00 0.00 0.00 4.18
2481 2582 4.793353 GCGTTCTACCCAGATGTATGAGAC 60.793 50.000 0.00 0.00 0.00 3.36
2482 2583 3.318275 GCGTTCTACCCAGATGTATGAGA 59.682 47.826 0.00 0.00 0.00 3.27
2483 2584 3.319405 AGCGTTCTACCCAGATGTATGAG 59.681 47.826 0.00 0.00 0.00 2.90
2484 2585 3.296854 AGCGTTCTACCCAGATGTATGA 58.703 45.455 0.00 0.00 0.00 2.15
2485 2586 3.643763 GAGCGTTCTACCCAGATGTATG 58.356 50.000 0.00 0.00 0.00 2.39
2486 2587 2.293677 CGAGCGTTCTACCCAGATGTAT 59.706 50.000 0.00 0.00 0.00 2.29
2487 2588 1.674441 CGAGCGTTCTACCCAGATGTA 59.326 52.381 0.00 0.00 0.00 2.29
2488 2589 0.456221 CGAGCGTTCTACCCAGATGT 59.544 55.000 0.00 0.00 0.00 3.06
2489 2590 0.249073 CCGAGCGTTCTACCCAGATG 60.249 60.000 0.00 0.00 0.00 2.90
2490 2591 0.683504 ACCGAGCGTTCTACCCAGAT 60.684 55.000 0.00 0.00 0.00 2.90
2491 2592 1.303888 ACCGAGCGTTCTACCCAGA 60.304 57.895 0.00 0.00 0.00 3.86
2492 2593 1.139095 GACCGAGCGTTCTACCCAG 59.861 63.158 0.00 0.00 0.00 4.45
2493 2594 0.968901 ATGACCGAGCGTTCTACCCA 60.969 55.000 0.00 0.00 0.00 4.51
2494 2595 0.248949 GATGACCGAGCGTTCTACCC 60.249 60.000 0.00 0.00 0.00 3.69
2495 2596 0.591741 CGATGACCGAGCGTTCTACC 60.592 60.000 0.00 0.00 41.76 3.18
2496 2597 0.098376 ACGATGACCGAGCGTTCTAC 59.902 55.000 0.00 0.00 46.85 2.59
2497 2598 2.474561 ACGATGACCGAGCGTTCTA 58.525 52.632 0.00 0.00 46.85 2.10
2498 2599 3.275088 ACGATGACCGAGCGTTCT 58.725 55.556 0.00 0.00 46.85 3.01
2502 2603 2.278206 CCAGACGATGACCGAGCG 60.278 66.667 0.00 0.00 41.76 5.03
2503 2604 1.226717 GACCAGACGATGACCGAGC 60.227 63.158 0.00 0.00 41.76 5.03
2504 2605 0.526211 TTGACCAGACGATGACCGAG 59.474 55.000 0.00 0.00 41.76 4.63
2505 2606 0.963225 TTTGACCAGACGATGACCGA 59.037 50.000 0.00 0.00 41.76 4.69
2506 2607 1.790755 TTTTGACCAGACGATGACCG 58.209 50.000 0.00 0.00 45.44 4.79
2523 2624 6.840780 AGACCCATCTGAATCGAAATTTTT 57.159 33.333 0.00 0.00 32.29 1.94
2537 2638 1.178276 GTCGTCTGACAGACCCATCT 58.822 55.000 26.16 0.00 42.12 2.90
2538 2639 3.723554 GTCGTCTGACAGACCCATC 57.276 57.895 26.16 12.39 42.12 3.51
2547 2648 1.079503 GCATTTGAGGGTCGTCTGAC 58.920 55.000 0.00 0.00 44.72 3.51
2548 2649 0.976641 AGCATTTGAGGGTCGTCTGA 59.023 50.000 0.00 0.00 0.00 3.27
2549 2650 1.466167 CAAGCATTTGAGGGTCGTCTG 59.534 52.381 0.00 0.00 36.36 3.51
2550 2651 1.611673 CCAAGCATTTGAGGGTCGTCT 60.612 52.381 0.00 0.00 36.36 4.18
2551 2652 0.804989 CCAAGCATTTGAGGGTCGTC 59.195 55.000 0.00 0.00 36.36 4.20
2552 2653 0.609131 CCCAAGCATTTGAGGGTCGT 60.609 55.000 0.00 0.00 36.36 4.34
2553 2654 2.183409 CCCAAGCATTTGAGGGTCG 58.817 57.895 0.00 0.00 36.36 4.79
2556 2657 0.609662 CCAACCCAAGCATTTGAGGG 59.390 55.000 0.00 0.00 46.96 4.30
2557 2658 0.037046 GCCAACCCAAGCATTTGAGG 60.037 55.000 0.00 0.00 36.36 3.86
2558 2659 0.037046 GGCCAACCCAAGCATTTGAG 60.037 55.000 0.00 0.00 36.36 3.02
2559 2660 1.814772 CGGCCAACCCAAGCATTTGA 61.815 55.000 2.24 0.00 36.36 2.69
2560 2661 1.374505 CGGCCAACCCAAGCATTTG 60.375 57.895 2.24 0.00 0.00 2.32
2561 2662 1.532794 TCGGCCAACCCAAGCATTT 60.533 52.632 2.24 0.00 0.00 2.32
2562 2663 2.117206 TCGGCCAACCCAAGCATT 59.883 55.556 2.24 0.00 0.00 3.56
2563 2664 2.676471 GTCGGCCAACCCAAGCAT 60.676 61.111 2.24 0.00 0.00 3.79
2564 2665 3.505790 ATGTCGGCCAACCCAAGCA 62.506 57.895 2.24 0.00 0.00 3.91
2565 2666 2.676471 ATGTCGGCCAACCCAAGC 60.676 61.111 2.24 0.00 0.00 4.01
2566 2667 2.046285 GGATGTCGGCCAACCCAAG 61.046 63.158 2.24 0.00 29.89 3.61
2567 2668 2.034999 GGATGTCGGCCAACCCAA 59.965 61.111 2.24 0.00 29.89 4.12
2568 2669 2.933287 AGGATGTCGGCCAACCCA 60.933 61.111 2.24 0.00 36.69 4.51
2569 2670 2.124695 GAGGATGTCGGCCAACCC 60.125 66.667 2.24 0.00 36.69 4.11
2570 2671 2.124695 GGAGGATGTCGGCCAACC 60.125 66.667 2.24 0.00 36.28 3.77
2571 2672 0.468226 TATGGAGGATGTCGGCCAAC 59.532 55.000 2.24 0.00 33.51 3.77
2572 2673 1.347707 GATATGGAGGATGTCGGCCAA 59.652 52.381 2.24 0.00 33.51 4.52
2573 2674 0.976641 GATATGGAGGATGTCGGCCA 59.023 55.000 2.24 0.00 34.45 5.36
2574 2675 1.270907 AGATATGGAGGATGTCGGCC 58.729 55.000 0.00 0.00 0.00 6.13
2575 2676 2.159170 GCTAGATATGGAGGATGTCGGC 60.159 54.545 0.00 0.00 0.00 5.54
2576 2677 2.428890 GGCTAGATATGGAGGATGTCGG 59.571 54.545 0.00 0.00 0.00 4.79
2577 2678 2.428890 GGGCTAGATATGGAGGATGTCG 59.571 54.545 0.00 0.00 0.00 4.35
2578 2679 3.445008 TGGGCTAGATATGGAGGATGTC 58.555 50.000 0.00 0.00 0.00 3.06
2579 2680 3.567375 TGGGCTAGATATGGAGGATGT 57.433 47.619 0.00 0.00 0.00 3.06
2580 2681 4.042062 TGTTTGGGCTAGATATGGAGGATG 59.958 45.833 0.00 0.00 0.00 3.51
2581 2682 4.242811 TGTTTGGGCTAGATATGGAGGAT 58.757 43.478 0.00 0.00 0.00 3.24
2582 2683 3.664320 TGTTTGGGCTAGATATGGAGGA 58.336 45.455 0.00 0.00 0.00 3.71
2583 2684 4.042062 TCATGTTTGGGCTAGATATGGAGG 59.958 45.833 0.00 0.00 0.00 4.30
2584 2685 5.233083 TCATGTTTGGGCTAGATATGGAG 57.767 43.478 0.00 0.00 0.00 3.86
2585 2686 4.042062 CCTCATGTTTGGGCTAGATATGGA 59.958 45.833 0.00 0.00 0.00 3.41
2586 2687 4.330250 CCTCATGTTTGGGCTAGATATGG 58.670 47.826 0.00 0.00 0.00 2.74
2587 2688 3.755378 GCCTCATGTTTGGGCTAGATATG 59.245 47.826 0.00 0.00 42.31 1.78
2588 2689 3.395607 TGCCTCATGTTTGGGCTAGATAT 59.604 43.478 17.23 0.00 45.45 1.63
2589 2690 2.777114 TGCCTCATGTTTGGGCTAGATA 59.223 45.455 17.23 1.31 45.45 1.98
2590 2691 1.565759 TGCCTCATGTTTGGGCTAGAT 59.434 47.619 17.23 0.00 45.45 1.98
2591 2692 0.991146 TGCCTCATGTTTGGGCTAGA 59.009 50.000 17.23 1.83 45.45 2.43
2592 2693 1.065199 TCTGCCTCATGTTTGGGCTAG 60.065 52.381 17.23 13.77 45.45 3.42
2593 2694 0.991146 TCTGCCTCATGTTTGGGCTA 59.009 50.000 17.23 7.69 45.45 3.93
2594 2695 0.610232 GTCTGCCTCATGTTTGGGCT 60.610 55.000 17.23 0.00 45.45 5.19
2595 2696 0.895100 TGTCTGCCTCATGTTTGGGC 60.895 55.000 12.28 12.28 45.45 5.36
2596 2697 1.475280 CATGTCTGCCTCATGTTTGGG 59.525 52.381 0.00 0.00 38.17 4.12
2597 2698 2.439409 TCATGTCTGCCTCATGTTTGG 58.561 47.619 10.90 0.00 42.03 3.28
2598 2699 3.119602 CCTTCATGTCTGCCTCATGTTTG 60.120 47.826 10.90 5.07 42.03 2.93
2599 2700 3.087031 CCTTCATGTCTGCCTCATGTTT 58.913 45.455 10.90 0.00 42.03 2.83
2600 2701 2.719739 CCTTCATGTCTGCCTCATGTT 58.280 47.619 10.90 0.00 42.03 2.71
2601 2702 1.681166 GCCTTCATGTCTGCCTCATGT 60.681 52.381 10.90 0.00 42.03 3.21
2602 2703 1.022735 GCCTTCATGTCTGCCTCATG 58.977 55.000 0.00 6.55 42.53 3.07
2603 2704 0.463295 CGCCTTCATGTCTGCCTCAT 60.463 55.000 0.00 0.00 0.00 2.90
2604 2705 1.078918 CGCCTTCATGTCTGCCTCA 60.079 57.895 0.00 0.00 0.00 3.86
2605 2706 1.078848 ACGCCTTCATGTCTGCCTC 60.079 57.895 0.00 0.00 0.00 4.70
2606 2707 1.078848 GACGCCTTCATGTCTGCCT 60.079 57.895 0.00 0.00 32.37 4.75
2607 2708 2.109126 GGACGCCTTCATGTCTGCC 61.109 63.158 0.00 0.00 35.45 4.85
2608 2709 2.456119 CGGACGCCTTCATGTCTGC 61.456 63.158 0.00 0.00 34.95 4.26
2609 2710 1.811266 CCGGACGCCTTCATGTCTG 60.811 63.158 0.00 0.00 40.43 3.51
2610 2711 2.579201 CCGGACGCCTTCATGTCT 59.421 61.111 0.00 0.00 35.45 3.41
2611 2712 2.511600 CCCGGACGCCTTCATGTC 60.512 66.667 0.73 0.00 0.00 3.06
2612 2713 4.778143 GCCCGGACGCCTTCATGT 62.778 66.667 0.73 0.00 0.00 3.21
2613 2714 4.776322 TGCCCGGACGCCTTCATG 62.776 66.667 0.73 0.00 0.00 3.07
2614 2715 4.778143 GTGCCCGGACGCCTTCAT 62.778 66.667 0.73 0.00 0.00 2.57
2641 2742 4.452733 CCCCTTCGTCAGGCCGAC 62.453 72.222 15.15 15.15 42.29 4.79
2646 2747 1.376037 GTGAAGCCCCTTCGTCAGG 60.376 63.158 1.07 0.00 42.78 3.86
2647 2748 0.951040 GTGTGAAGCCCCTTCGTCAG 60.951 60.000 1.07 0.00 42.78 3.51
2648 2749 1.070786 GTGTGAAGCCCCTTCGTCA 59.929 57.895 1.07 0.95 42.78 4.35
2649 2750 2.027625 CGTGTGAAGCCCCTTCGTC 61.028 63.158 1.07 0.00 42.78 4.20
2650 2751 2.030562 CGTGTGAAGCCCCTTCGT 59.969 61.111 1.07 0.00 42.78 3.85
2651 2752 0.882927 TTTCGTGTGAAGCCCCTTCG 60.883 55.000 1.07 0.00 42.78 3.79
2652 2753 1.314730 TTTTCGTGTGAAGCCCCTTC 58.685 50.000 0.00 0.00 40.54 3.46
2653 2754 1.613437 CATTTTCGTGTGAAGCCCCTT 59.387 47.619 0.00 0.00 35.06 3.95
2654 2755 1.247567 CATTTTCGTGTGAAGCCCCT 58.752 50.000 0.00 0.00 35.06 4.79
2655 2756 0.388520 GCATTTTCGTGTGAAGCCCC 60.389 55.000 0.00 0.00 35.06 5.80
2656 2757 0.388520 GGCATTTTCGTGTGAAGCCC 60.389 55.000 0.00 0.00 37.11 5.19
2657 2758 0.388520 GGGCATTTTCGTGTGAAGCC 60.389 55.000 0.00 0.00 40.46 4.35
2658 2759 0.729140 CGGGCATTTTCGTGTGAAGC 60.729 55.000 0.00 0.00 35.06 3.86
2659 2760 0.871722 TCGGGCATTTTCGTGTGAAG 59.128 50.000 0.00 0.00 35.06 3.02
2660 2761 1.309950 TTCGGGCATTTTCGTGTGAA 58.690 45.000 0.00 0.00 0.00 3.18
2661 2762 1.309950 TTTCGGGCATTTTCGTGTGA 58.690 45.000 0.00 0.00 0.00 3.58
2662 2763 1.784283 GTTTTCGGGCATTTTCGTGTG 59.216 47.619 0.00 0.00 0.00 3.82
2663 2764 1.269361 GGTTTTCGGGCATTTTCGTGT 60.269 47.619 0.00 0.00 0.00 4.49
2664 2765 1.414378 GGTTTTCGGGCATTTTCGTG 58.586 50.000 0.00 0.00 0.00 4.35
2665 2766 0.315886 GGGTTTTCGGGCATTTTCGT 59.684 50.000 0.00 0.00 0.00 3.85
2666 2767 0.731174 CGGGTTTTCGGGCATTTTCG 60.731 55.000 0.00 0.00 0.00 3.46
2667 2768 0.599060 TCGGGTTTTCGGGCATTTTC 59.401 50.000 0.00 0.00 0.00 2.29
2668 2769 1.067213 CATCGGGTTTTCGGGCATTTT 60.067 47.619 0.00 0.00 0.00 1.82
2669 2770 0.530288 CATCGGGTTTTCGGGCATTT 59.470 50.000 0.00 0.00 0.00 2.32
2670 2771 1.319614 CCATCGGGTTTTCGGGCATT 61.320 55.000 0.00 0.00 0.00 3.56
2671 2772 1.752694 CCATCGGGTTTTCGGGCAT 60.753 57.895 0.00 0.00 0.00 4.40
2672 2773 2.360600 CCATCGGGTTTTCGGGCA 60.361 61.111 0.00 0.00 0.00 5.36
2682 2783 1.141881 CGTCCTTCAGACCATCGGG 59.858 63.158 0.00 0.00 43.08 5.14
2683 2784 1.519455 GCGTCCTTCAGACCATCGG 60.519 63.158 0.00 0.00 43.08 4.18
2684 2785 1.519455 GGCGTCCTTCAGACCATCG 60.519 63.158 0.00 0.00 43.08 3.84
2685 2786 1.519455 CGGCGTCCTTCAGACCATC 60.519 63.158 0.00 0.00 43.08 3.51
2686 2787 2.579201 CGGCGTCCTTCAGACCAT 59.421 61.111 0.00 0.00 43.08 3.55
2687 2788 4.373116 GCGGCGTCCTTCAGACCA 62.373 66.667 9.37 0.00 43.08 4.02
2689 2790 4.719369 ACGCGGCGTCCTTCAGAC 62.719 66.667 24.03 0.00 42.54 3.51
2690 2791 4.717629 CACGCGGCGTCCTTCAGA 62.718 66.667 26.96 0.00 38.32 3.27
2710 2811 4.681978 ACGACAAGCCGGGACAGC 62.682 66.667 2.18 0.00 0.00 4.40
2711 2812 2.432628 GACGACAAGCCGGGACAG 60.433 66.667 2.18 0.00 0.00 3.51
2712 2813 3.998672 GGACGACAAGCCGGGACA 61.999 66.667 2.18 0.00 0.00 4.02
2713 2814 3.524648 TTGGACGACAAGCCGGGAC 62.525 63.158 2.18 0.00 33.18 4.46
2714 2815 3.235481 TTGGACGACAAGCCGGGA 61.235 61.111 2.18 0.00 33.18 5.14
2722 2823 2.139917 CGGATTTTGTCTTGGACGACA 58.860 47.619 0.00 0.00 41.82 4.35
2723 2824 1.463444 CCGGATTTTGTCTTGGACGAC 59.537 52.381 0.00 0.00 34.95 4.34
2724 2825 1.803334 CCGGATTTTGTCTTGGACGA 58.197 50.000 0.00 0.00 34.95 4.20
2725 2826 0.168128 GCCGGATTTTGTCTTGGACG 59.832 55.000 5.05 0.00 34.95 4.79
2726 2827 1.534729 AGCCGGATTTTGTCTTGGAC 58.465 50.000 5.05 0.00 0.00 4.02
2727 2828 3.644966 ATAGCCGGATTTTGTCTTGGA 57.355 42.857 5.05 0.00 0.00 3.53
2728 2829 4.718940 AAATAGCCGGATTTTGTCTTGG 57.281 40.909 5.05 0.00 0.00 3.61
2729 2830 5.743872 GCTTAAATAGCCGGATTTTGTCTTG 59.256 40.000 5.05 0.00 44.48 3.02
2730 2831 5.891451 GCTTAAATAGCCGGATTTTGTCTT 58.109 37.500 5.05 0.00 44.48 3.01
2731 2832 5.500645 GCTTAAATAGCCGGATTTTGTCT 57.499 39.130 5.05 0.00 44.48 3.41
2744 2845 0.463116 ACACCGGCCGGCTTAAATAG 60.463 55.000 43.58 23.37 39.32 1.73
2745 2846 0.462403 GACACCGGCCGGCTTAAATA 60.462 55.000 43.58 0.00 39.32 1.40
2746 2847 1.747745 GACACCGGCCGGCTTAAAT 60.748 57.895 43.58 21.49 39.32 1.40
2747 2848 2.358984 GACACCGGCCGGCTTAAA 60.359 61.111 43.58 0.00 39.32 1.52
2748 2849 4.397832 GGACACCGGCCGGCTTAA 62.398 66.667 43.58 0.00 39.32 1.85
2759 2860 1.673337 GTTAGGGTTGCGGGACACC 60.673 63.158 0.00 0.00 0.00 4.16
2760 2861 1.673337 GGTTAGGGTTGCGGGACAC 60.673 63.158 0.00 0.00 0.00 3.67
2761 2862 2.751688 GGTTAGGGTTGCGGGACA 59.248 61.111 0.00 0.00 0.00 4.02
2762 2863 2.045634 GGGTTAGGGTTGCGGGAC 60.046 66.667 0.00 0.00 0.00 4.46
2763 2864 1.917336 GATGGGTTAGGGTTGCGGGA 61.917 60.000 0.00 0.00 0.00 5.14
2764 2865 1.453197 GATGGGTTAGGGTTGCGGG 60.453 63.158 0.00 0.00 0.00 6.13
2765 2866 1.453197 GGATGGGTTAGGGTTGCGG 60.453 63.158 0.00 0.00 0.00 5.69
2766 2867 1.453197 GGGATGGGTTAGGGTTGCG 60.453 63.158 0.00 0.00 0.00 4.85
2767 2868 1.076265 GGGGATGGGTTAGGGTTGC 60.076 63.158 0.00 0.00 0.00 4.17
2768 2869 0.924226 AGGGGGATGGGTTAGGGTTG 60.924 60.000 0.00 0.00 0.00 3.77
2769 2870 0.178782 AAGGGGGATGGGTTAGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
2770 2871 0.626574 GAAGGGGGATGGGTTAGGGT 60.627 60.000 0.00 0.00 0.00 4.34
2771 2872 0.328548 AGAAGGGGGATGGGTTAGGG 60.329 60.000 0.00 0.00 0.00 3.53
2772 2873 1.141185 GAGAAGGGGGATGGGTTAGG 58.859 60.000 0.00 0.00 0.00 2.69
2773 2874 1.141185 GGAGAAGGGGGATGGGTTAG 58.859 60.000 0.00 0.00 0.00 2.34
2774 2875 0.328158 GGGAGAAGGGGGATGGGTTA 60.328 60.000 0.00 0.00 0.00 2.85
2775 2876 1.622752 GGGAGAAGGGGGATGGGTT 60.623 63.158 0.00 0.00 0.00 4.11
2776 2877 2.044620 GGGAGAAGGGGGATGGGT 59.955 66.667 0.00 0.00 0.00 4.51
2777 2878 2.778717 GGGGAGAAGGGGGATGGG 60.779 72.222 0.00 0.00 0.00 4.00
2778 2879 1.772156 GAGGGGAGAAGGGGGATGG 60.772 68.421 0.00 0.00 0.00 3.51
2779 2880 0.766288 GAGAGGGGAGAAGGGGGATG 60.766 65.000 0.00 0.00 0.00 3.51
2780 2881 1.635051 GAGAGGGGAGAAGGGGGAT 59.365 63.158 0.00 0.00 0.00 3.85
2781 2882 2.647949 GGAGAGGGGAGAAGGGGGA 61.648 68.421 0.00 0.00 0.00 4.81
2782 2883 2.040359 GGAGAGGGGAGAAGGGGG 60.040 72.222 0.00 0.00 0.00 5.40
2783 2884 2.444895 CGGAGAGGGGAGAAGGGG 60.445 72.222 0.00 0.00 0.00 4.79
2784 2885 3.157949 GCGGAGAGGGGAGAAGGG 61.158 72.222 0.00 0.00 0.00 3.95
2785 2886 3.532155 CGCGGAGAGGGGAGAAGG 61.532 72.222 0.00 0.00 0.00 3.46
2786 2887 4.214327 GCGCGGAGAGGGGAGAAG 62.214 72.222 8.83 0.00 0.00 2.85
2804 2905 4.899239 GATGGGCTCGGACTGGCG 62.899 72.222 0.00 0.00 0.00 5.69
2805 2906 4.554036 GGATGGGCTCGGACTGGC 62.554 72.222 0.00 0.00 0.00 4.85
2806 2907 4.227134 CGGATGGGCTCGGACTGG 62.227 72.222 0.00 0.00 0.00 4.00
2807 2908 4.899239 GCGGATGGGCTCGGACTG 62.899 72.222 0.00 0.00 0.00 3.51
2816 2917 4.888325 AGGGAGGAGGCGGATGGG 62.888 72.222 0.00 0.00 0.00 4.00
2817 2918 3.237741 GAGGGAGGAGGCGGATGG 61.238 72.222 0.00 0.00 0.00 3.51
2818 2919 2.123077 AGAGGGAGGAGGCGGATG 60.123 66.667 0.00 0.00 0.00 3.51
2819 2920 2.200092 GAGAGGGAGGAGGCGGAT 59.800 66.667 0.00 0.00 0.00 4.18
2820 2921 4.144727 GGAGAGGGAGGAGGCGGA 62.145 72.222 0.00 0.00 0.00 5.54
2824 2925 4.150454 AGCGGGAGAGGGAGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
2825 2926 2.520741 GAGCGGGAGAGGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
2826 2927 4.144727 GGAGCGGGAGAGGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
2853 2954 2.747855 GAAGTGCCGGAGCTTGGG 60.748 66.667 5.05 4.04 40.80 4.12
2854 2955 3.121030 CGAAGTGCCGGAGCTTGG 61.121 66.667 5.05 5.81 40.80 3.61
2855 2956 3.793144 GCGAAGTGCCGGAGCTTG 61.793 66.667 5.05 4.78 40.80 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.