Multiple sequence alignment - TraesCS3A01G419400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G419400 chr3A 100.000 3443 0 0 1 3443 661495632 661492190 0.000000e+00 6359
1 TraesCS3A01G419400 chr3B 88.663 2805 124 79 1 2699 696589493 696586777 0.000000e+00 3240
2 TraesCS3A01G419400 chr3B 89.950 398 23 9 3061 3443 696582003 696581608 6.640000e-137 497
3 TraesCS3A01G419400 chr3B 93.603 297 18 1 2697 2993 696586554 696586259 3.150000e-120 442
4 TraesCS3A01G419400 chr3D 86.807 1137 90 26 1175 2285 526988867 526987765 0.000000e+00 1214
5 TraesCS3A01G419400 chr3D 87.344 1122 50 46 3 1065 526990134 526989046 0.000000e+00 1201
6 TraesCS3A01G419400 chr3D 94.221 398 8 8 2316 2698 526987763 526987366 8.230000e-166 593
7 TraesCS3A01G419400 chr3D 90.000 80 5 2 1061 1139 526989018 526988941 2.190000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G419400 chr3A 661492190 661495632 3442 True 6359 6359 100.000 1 3443 1 chr3A.!!$R1 3442
1 TraesCS3A01G419400 chr3B 696586259 696589493 3234 True 1841 3240 91.133 1 2993 2 chr3B.!!$R2 2992
2 TraesCS3A01G419400 chr3D 526987366 526990134 2768 True 777 1214 89.593 3 2698 4 chr3D.!!$R1 2695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.462047 ATTCCTCGCCAATCCACGAC 60.462 55.0 0.0 0.0 34.08 4.34 F
835 910 0.475906 CCCCACATTCCATCTCCCTC 59.524 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1260 0.450583 CAGCGCACATTGCAGAAGAT 59.549 50.0 11.47 0.0 45.36 2.40 R
2791 3264 0.250038 TCAGTGAGCAGGCTTGTGTC 60.250 55.0 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.817634 CGCCACCCTCACTCAACAAA 60.818 55.000 0.00 0.00 0.00 2.83
25 26 1.620822 GCCACCCTCACTCAACAAAT 58.379 50.000 0.00 0.00 0.00 2.32
27 28 1.806542 CCACCCTCACTCAACAAATCG 59.193 52.381 0.00 0.00 0.00 3.34
30 31 2.368875 ACCCTCACTCAACAAATCGACT 59.631 45.455 0.00 0.00 0.00 4.18
63 64 0.586802 GCCGAACGCCATTATTCCTC 59.413 55.000 0.00 0.00 0.00 3.71
70 71 1.197721 CGCCATTATTCCTCGCCAATC 59.802 52.381 0.00 0.00 0.00 2.67
71 72 1.541588 GCCATTATTCCTCGCCAATCC 59.458 52.381 0.00 0.00 0.00 3.01
72 73 2.862541 CCATTATTCCTCGCCAATCCA 58.137 47.619 0.00 0.00 0.00 3.41
73 74 2.554032 CCATTATTCCTCGCCAATCCAC 59.446 50.000 0.00 0.00 0.00 4.02
74 75 1.948104 TTATTCCTCGCCAATCCACG 58.052 50.000 0.00 0.00 0.00 4.94
75 76 1.116308 TATTCCTCGCCAATCCACGA 58.884 50.000 0.00 0.00 36.73 4.35
76 77 0.462047 ATTCCTCGCCAATCCACGAC 60.462 55.000 0.00 0.00 34.08 4.34
84 86 1.275010 GCCAATCCACGACCCATTTTT 59.725 47.619 0.00 0.00 0.00 1.94
102 104 1.036707 TTCCCTTTCAAAAGCCACCG 58.963 50.000 0.00 0.00 34.69 4.94
139 144 2.105993 AGTACGCCCTCCTTTCAAAACT 59.894 45.455 0.00 0.00 0.00 2.66
159 168 1.477700 TCACAAGCAAAGCAAGCAAGT 59.522 42.857 0.00 0.00 0.00 3.16
224 236 4.781959 TCCGTTAACCGCGAGCCG 62.782 66.667 8.23 1.82 34.38 5.52
432 474 2.421314 CCTATCATCACGGCCGCA 59.579 61.111 28.58 13.44 0.00 5.69
515 560 4.037446 AGTGAGAGACAGACAGTGAAAGAC 59.963 45.833 0.00 0.00 0.00 3.01
520 565 4.211125 AGACAGACAGTGAAAGACAGAGA 58.789 43.478 0.00 0.00 0.00 3.10
521 566 4.278170 AGACAGACAGTGAAAGACAGAGAG 59.722 45.833 0.00 0.00 0.00 3.20
522 567 3.320541 ACAGACAGTGAAAGACAGAGAGG 59.679 47.826 0.00 0.00 0.00 3.69
523 568 2.896685 AGACAGTGAAAGACAGAGAGGG 59.103 50.000 0.00 0.00 0.00 4.30
542 589 6.901300 AGAGGGGGTAAATAATGAAGTCTTC 58.099 40.000 5.58 5.58 0.00 2.87
648 695 4.840005 CTCGGAAAGCGAGGGGGC 62.840 72.222 0.00 0.00 0.00 5.80
652 699 4.699522 GAAAGCGAGGGGGCGTGT 62.700 66.667 0.00 0.00 38.18 4.49
671 720 4.994201 TCGAGTGTCGTGCGTGGC 62.994 66.667 0.00 0.00 41.35 5.01
673 722 3.106407 GAGTGTCGTGCGTGGCTC 61.106 66.667 0.00 0.00 0.00 4.70
829 904 3.219198 GCGCCCCCACATTCCATC 61.219 66.667 0.00 0.00 0.00 3.51
830 905 2.597340 CGCCCCCACATTCCATCT 59.403 61.111 0.00 0.00 0.00 2.90
831 906 1.526917 CGCCCCCACATTCCATCTC 60.527 63.158 0.00 0.00 0.00 2.75
832 907 1.152673 GCCCCCACATTCCATCTCC 60.153 63.158 0.00 0.00 0.00 3.71
833 908 1.538666 CCCCCACATTCCATCTCCC 59.461 63.158 0.00 0.00 0.00 4.30
834 909 0.995675 CCCCCACATTCCATCTCCCT 60.996 60.000 0.00 0.00 0.00 4.20
835 910 0.475906 CCCCACATTCCATCTCCCTC 59.524 60.000 0.00 0.00 0.00 4.30
836 911 0.475906 CCCACATTCCATCTCCCTCC 59.524 60.000 0.00 0.00 0.00 4.30
837 912 0.475906 CCACATTCCATCTCCCTCCC 59.524 60.000 0.00 0.00 0.00 4.30
860 939 2.294078 CCTCTCTCTTTGCCCCGGT 61.294 63.158 0.00 0.00 0.00 5.28
874 953 4.016706 CGGTCCAGCCTTTCCGGT 62.017 66.667 0.00 0.00 39.41 5.28
888 967 3.738830 TTCCGGTGGCTATGTATACAC 57.261 47.619 7.96 0.00 0.00 2.90
969 1054 1.682257 GTGGCTGCTTCTCCTCCTT 59.318 57.895 0.00 0.00 0.00 3.36
1061 1152 5.222007 TGCTCTTCTTTCATTCTCCTCCTTT 60.222 40.000 0.00 0.00 0.00 3.11
1062 1153 5.123661 GCTCTTCTTTCATTCTCCTCCTTTG 59.876 44.000 0.00 0.00 0.00 2.77
1063 1154 5.006386 TCTTCTTTCATTCTCCTCCTTTGC 58.994 41.667 0.00 0.00 0.00 3.68
1066 1157 3.795688 TTCATTCTCCTCCTTTGCTGT 57.204 42.857 0.00 0.00 0.00 4.40
1067 1158 4.908601 TTCATTCTCCTCCTTTGCTGTA 57.091 40.909 0.00 0.00 0.00 2.74
1068 1159 4.478206 TCATTCTCCTCCTTTGCTGTAG 57.522 45.455 0.00 0.00 0.00 2.74
1069 1160 3.198635 TCATTCTCCTCCTTTGCTGTAGG 59.801 47.826 0.00 0.00 0.00 3.18
1107 1227 5.236655 TCAGTACTTGTAGCTGAATCTCG 57.763 43.478 0.00 0.00 36.46 4.04
1114 1234 2.663630 TAGCTGAATCTCGCGACGCC 62.664 60.000 15.34 0.00 0.00 5.68
1116 1236 2.506217 TGAATCTCGCGACGCCAC 60.506 61.111 15.34 0.00 0.00 5.01
1139 1260 4.517453 CACAGTTTGGGGTTCGAATCTTTA 59.483 41.667 8.59 0.00 0.00 1.85
1140 1261 5.183140 CACAGTTTGGGGTTCGAATCTTTAT 59.817 40.000 8.59 0.00 0.00 1.40
1141 1262 5.414765 ACAGTTTGGGGTTCGAATCTTTATC 59.585 40.000 8.59 0.00 0.00 1.75
1142 1263 5.648092 CAGTTTGGGGTTCGAATCTTTATCT 59.352 40.000 8.59 0.00 0.00 1.98
1143 1264 6.151144 CAGTTTGGGGTTCGAATCTTTATCTT 59.849 38.462 8.59 0.00 0.00 2.40
1144 1265 6.374613 AGTTTGGGGTTCGAATCTTTATCTTC 59.625 38.462 8.59 0.00 0.00 2.87
1163 1284 4.047059 GCAATGTGCGCTGCTGGT 62.047 61.111 9.73 0.00 35.62 4.00
1201 1366 2.470821 CTGTAACGCAGTACTATGGCC 58.529 52.381 0.00 0.00 45.00 5.36
1220 1386 2.503061 CTCGTAGCAGCAGGCCAT 59.497 61.111 5.01 0.00 46.50 4.40
1226 1392 1.134995 GTAGCAGCAGGCCATTTTTCC 60.135 52.381 5.01 0.00 46.50 3.13
1289 1455 1.476488 AGCACCTGAAAGTTTTGCGTT 59.524 42.857 4.74 0.00 37.38 4.84
1293 1459 2.758423 ACCTGAAAGTTTTGCGTTTCCT 59.242 40.909 0.00 0.00 32.61 3.36
1298 1464 6.197364 TGAAAGTTTTGCGTTTCCTTCTTA 57.803 33.333 0.00 0.00 32.61 2.10
1310 1491 9.042008 TGCGTTTCCTTCTTAATTAGATCATAC 57.958 33.333 0.00 0.00 31.54 2.39
1316 1497 8.509690 TCCTTCTTAATTAGATCATACGTACCG 58.490 37.037 0.00 0.00 31.54 4.02
1346 1533 3.494626 TCACAATGCTTCTTGTTCTCGAC 59.505 43.478 0.00 0.00 37.25 4.20
1350 1537 1.000955 TGCTTCTTGTTCTCGACCTCC 59.999 52.381 0.00 0.00 0.00 4.30
1379 1566 0.392193 CTGCTCCAGCCGAACATTCT 60.392 55.000 0.00 0.00 41.18 2.40
1382 1569 1.131315 GCTCCAGCCGAACATTCTTTC 59.869 52.381 0.00 0.00 34.31 2.62
1386 1576 3.888930 TCCAGCCGAACATTCTTTCTTTT 59.111 39.130 0.00 0.00 0.00 2.27
1387 1577 4.340950 TCCAGCCGAACATTCTTTCTTTTT 59.659 37.500 0.00 0.00 0.00 1.94
1418 1608 0.391661 TGAGGAAGAAGACCATGCGC 60.392 55.000 0.00 0.00 0.00 6.09
1436 1626 1.812571 CGCACAGGGATTTAAGCAAGT 59.187 47.619 0.00 0.00 0.00 3.16
1441 1631 4.039124 CACAGGGATTTAAGCAAGTTGGTT 59.961 41.667 22.69 22.69 41.42 3.67
1443 1633 3.832490 AGGGATTTAAGCAAGTTGGTTCC 59.168 43.478 22.75 17.34 39.08 3.62
1444 1634 3.576550 GGGATTTAAGCAAGTTGGTTCCA 59.423 43.478 22.75 11.70 39.08 3.53
1450 1640 4.486125 AAGCAAGTTGGTTCCATTGTTT 57.514 36.364 14.42 4.89 31.72 2.83
1451 1641 3.795877 AGCAAGTTGGTTCCATTGTTTG 58.204 40.909 0.63 4.77 0.00 2.93
1455 1645 3.642141 AGTTGGTTCCATTGTTTGGTCT 58.358 40.909 0.00 0.00 46.52 3.85
1460 1651 3.132111 GGTTCCATTGTTTGGTCTTGTGT 59.868 43.478 0.00 0.00 46.52 3.72
1661 1854 2.943449 CCTACAAGAAGGTCGGACTC 57.057 55.000 8.23 0.00 31.46 3.36
1664 1857 1.410004 ACAAGAAGGTCGGACTCACA 58.590 50.000 8.23 0.00 0.00 3.58
1669 1877 0.828022 AAGGTCGGACTCACACACAA 59.172 50.000 8.23 0.00 0.00 3.33
1672 1880 1.209128 GTCGGACTCACACACAACAG 58.791 55.000 0.00 0.00 0.00 3.16
1679 1887 4.216257 GGACTCACACACAACAGCATTATT 59.784 41.667 0.00 0.00 0.00 1.40
1689 1897 6.209192 ACACAACAGCATTATTTCCAGATCAA 59.791 34.615 0.00 0.00 0.00 2.57
1759 1967 0.252927 AGTGAAGAAGGGGGAGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
1780 1988 1.206831 GAGAAGCCGAACGCAAACC 59.793 57.895 0.00 0.00 41.38 3.27
1847 2055 4.099170 GCAGCAGCAGCAGAACCG 62.099 66.667 4.63 0.00 45.49 4.44
1985 2196 4.069869 GCAGAAGGCAAGTGCTCA 57.930 55.556 2.85 0.00 43.97 4.26
1988 2199 1.399791 GCAGAAGGCAAGTGCTCATAC 59.600 52.381 2.85 0.00 43.97 2.39
2088 2301 6.346838 CGCCAAAAAGATGAAAAGAAATGGAC 60.347 38.462 0.00 0.00 0.00 4.02
2242 2470 8.644318 TCTTGCTTTCTTAGGATAATTCGTAC 57.356 34.615 0.00 0.00 0.00 3.67
2268 2496 1.159713 GCTTTGGCAAAAGTGGTGGC 61.160 55.000 15.05 8.14 44.02 5.01
2327 2555 3.149196 AGGCTAGTGTTGGAATGTTGTG 58.851 45.455 0.00 0.00 0.00 3.33
2366 2594 4.950050 ACCAGATCTAACGGTGATGAATC 58.050 43.478 2.49 0.00 0.00 2.52
2379 2621 4.445385 GGTGATGAATCTTGTGTTTTGTGC 59.555 41.667 0.00 0.00 0.00 4.57
2453 2695 2.855963 GCATCGCCTGAATCAAACAATG 59.144 45.455 0.00 0.00 0.00 2.82
2672 2918 1.519246 CGCATCTGCTTCCTCCTCA 59.481 57.895 0.09 0.00 39.32 3.86
2734 3207 3.055963 TCACAATGTTCATGATTTGGCCC 60.056 43.478 0.00 0.00 0.00 5.80
2736 3209 3.196254 ACAATGTTCATGATTTGGCCCTC 59.804 43.478 0.00 0.00 0.00 4.30
2829 3302 4.256110 CTGAAGATGTTGGTGAGCACATA 58.744 43.478 2.75 0.00 33.62 2.29
2850 3323 3.762407 TTCGACTCCCACAATCTCAAA 57.238 42.857 0.00 0.00 0.00 2.69
2864 3337 5.697633 ACAATCTCAAAATGTTGTGCCATTC 59.302 36.000 0.00 0.00 34.01 2.67
2869 3342 4.218200 TCAAAATGTTGTGCCATTCTCGAT 59.782 37.500 0.00 0.00 34.01 3.59
2877 3350 1.004161 TGCCATTCTCGATTCCCACAA 59.996 47.619 0.00 0.00 0.00 3.33
2878 3351 2.091541 GCCATTCTCGATTCCCACAAA 58.908 47.619 0.00 0.00 0.00 2.83
2887 3360 6.234920 TCTCGATTCCCACAAACTCAAAATA 58.765 36.000 0.00 0.00 0.00 1.40
2894 3367 4.497300 CCACAAACTCAAAATATGCCCTG 58.503 43.478 0.00 0.00 0.00 4.45
2899 3372 3.016736 ACTCAAAATATGCCCTGTTCGG 58.983 45.455 0.00 0.00 0.00 4.30
2913 3386 5.681639 CCCTGTTCGGATTATCTTTACCTT 58.318 41.667 0.00 0.00 33.16 3.50
2964 3437 8.279970 TGTAGGAAAAACATCAACATCTATGG 57.720 34.615 0.00 0.00 0.00 2.74
2985 3458 3.244353 GGTGTCATAGCAGGCATCACTAT 60.244 47.826 0.00 0.00 0.00 2.12
2986 3459 3.993081 GTGTCATAGCAGGCATCACTATC 59.007 47.826 0.00 0.00 0.00 2.08
2993 3466 3.647113 AGCAGGCATCACTATCTCTTCAT 59.353 43.478 0.00 0.00 0.00 2.57
2994 3467 4.837298 AGCAGGCATCACTATCTCTTCATA 59.163 41.667 0.00 0.00 0.00 2.15
2995 3468 5.306419 AGCAGGCATCACTATCTCTTCATAA 59.694 40.000 0.00 0.00 0.00 1.90
2996 3469 5.638657 GCAGGCATCACTATCTCTTCATAAG 59.361 44.000 0.00 0.00 0.00 1.73
2997 3470 6.164876 CAGGCATCACTATCTCTTCATAAGG 58.835 44.000 0.00 0.00 0.00 2.69
2998 3471 4.934602 GGCATCACTATCTCTTCATAAGGC 59.065 45.833 0.00 0.00 0.00 4.35
2999 3472 5.279910 GGCATCACTATCTCTTCATAAGGCT 60.280 44.000 0.00 0.00 0.00 4.58
3000 3473 6.229733 GCATCACTATCTCTTCATAAGGCTT 58.770 40.000 4.58 4.58 0.00 4.35
3001 3474 6.368516 GCATCACTATCTCTTCATAAGGCTTC 59.631 42.308 1.30 0.00 0.00 3.86
3002 3475 7.669427 CATCACTATCTCTTCATAAGGCTTCT 58.331 38.462 1.30 0.00 0.00 2.85
3003 3476 7.283625 TCACTATCTCTTCATAAGGCTTCTC 57.716 40.000 1.30 0.00 0.00 2.87
3004 3477 6.836007 TCACTATCTCTTCATAAGGCTTCTCA 59.164 38.462 1.30 0.00 0.00 3.27
3005 3478 7.508636 TCACTATCTCTTCATAAGGCTTCTCAT 59.491 37.037 1.30 0.00 0.00 2.90
3006 3479 7.599621 CACTATCTCTTCATAAGGCTTCTCATG 59.400 40.741 1.30 2.16 0.00 3.07
3007 3480 5.946942 TCTCTTCATAAGGCTTCTCATGT 57.053 39.130 1.30 0.00 0.00 3.21
3008 3481 5.911752 TCTCTTCATAAGGCTTCTCATGTC 58.088 41.667 1.30 0.00 0.00 3.06
3009 3482 4.686972 TCTTCATAAGGCTTCTCATGTCG 58.313 43.478 1.30 0.00 0.00 4.35
3010 3483 4.160439 TCTTCATAAGGCTTCTCATGTCGT 59.840 41.667 1.30 0.00 0.00 4.34
3011 3484 5.359860 TCTTCATAAGGCTTCTCATGTCGTA 59.640 40.000 1.30 0.00 0.00 3.43
3012 3485 5.592104 TCATAAGGCTTCTCATGTCGTAA 57.408 39.130 1.30 0.00 0.00 3.18
3013 3486 5.592054 TCATAAGGCTTCTCATGTCGTAAG 58.408 41.667 1.30 0.00 0.00 2.34
3014 3487 3.963428 AAGGCTTCTCATGTCGTAAGT 57.037 42.857 0.00 0.00 39.48 2.24
3015 3488 6.320418 TCATAAGGCTTCTCATGTCGTAAGTA 59.680 38.462 1.30 0.00 39.48 2.24
3016 3489 5.401531 AAGGCTTCTCATGTCGTAAGTAA 57.598 39.130 0.00 0.00 39.48 2.24
3017 3490 4.745649 AGGCTTCTCATGTCGTAAGTAAC 58.254 43.478 0.00 0.00 39.48 2.50
3018 3491 4.463186 AGGCTTCTCATGTCGTAAGTAACT 59.537 41.667 0.00 0.00 39.48 2.24
3019 3492 4.799428 GGCTTCTCATGTCGTAAGTAACTC 59.201 45.833 0.00 0.00 39.48 3.01
3020 3493 5.399858 GCTTCTCATGTCGTAAGTAACTCA 58.600 41.667 0.00 0.00 39.48 3.41
3021 3494 6.037098 GCTTCTCATGTCGTAAGTAACTCAT 58.963 40.000 0.00 0.00 39.48 2.90
3022 3495 7.194278 GCTTCTCATGTCGTAAGTAACTCATA 58.806 38.462 0.00 0.00 39.48 2.15
3023 3496 7.701078 GCTTCTCATGTCGTAAGTAACTCATAA 59.299 37.037 0.00 0.00 39.48 1.90
3024 3497 9.227490 CTTCTCATGTCGTAAGTAACTCATAAG 57.773 37.037 0.00 0.00 39.48 1.73
3025 3498 8.502105 TCTCATGTCGTAAGTAACTCATAAGA 57.498 34.615 0.00 0.00 39.48 2.10
3026 3499 8.613482 TCTCATGTCGTAAGTAACTCATAAGAG 58.387 37.037 0.00 0.00 42.98 2.85
3027 3500 7.704271 TCATGTCGTAAGTAACTCATAAGAGG 58.296 38.462 0.00 0.00 42.12 3.69
3028 3501 6.446781 TGTCGTAAGTAACTCATAAGAGGG 57.553 41.667 0.00 0.00 42.12 4.30
3029 3502 5.359009 TGTCGTAAGTAACTCATAAGAGGGG 59.641 44.000 0.00 0.00 42.12 4.79
3030 3503 5.591877 GTCGTAAGTAACTCATAAGAGGGGA 59.408 44.000 0.00 0.00 42.12 4.81
3031 3504 6.264970 GTCGTAAGTAACTCATAAGAGGGGAT 59.735 42.308 0.00 0.00 42.12 3.85
3032 3505 6.264744 TCGTAAGTAACTCATAAGAGGGGATG 59.735 42.308 0.00 0.00 42.12 3.51
3033 3506 5.896073 AAGTAACTCATAAGAGGGGATGG 57.104 43.478 0.00 0.00 46.44 3.51
3034 3507 4.897051 AGTAACTCATAAGAGGGGATGGT 58.103 43.478 0.00 0.00 46.44 3.55
3035 3508 4.902448 AGTAACTCATAAGAGGGGATGGTC 59.098 45.833 0.00 0.00 46.44 4.02
3036 3509 3.421394 ACTCATAAGAGGGGATGGTCA 57.579 47.619 0.00 0.00 46.44 4.02
3037 3510 3.736094 ACTCATAAGAGGGGATGGTCAA 58.264 45.455 0.00 0.00 46.44 3.18
3038 3511 3.713764 ACTCATAAGAGGGGATGGTCAAG 59.286 47.826 0.00 0.00 46.44 3.02
3039 3512 3.048600 TCATAAGAGGGGATGGTCAAGG 58.951 50.000 0.00 0.00 0.00 3.61
3040 3513 1.893315 TAAGAGGGGATGGTCAAGGG 58.107 55.000 0.00 0.00 0.00 3.95
3041 3514 0.121197 AAGAGGGGATGGTCAAGGGA 59.879 55.000 0.00 0.00 0.00 4.20
3042 3515 0.327000 AGAGGGGATGGTCAAGGGAG 60.327 60.000 0.00 0.00 0.00 4.30
3043 3516 1.308216 AGGGGATGGTCAAGGGAGG 60.308 63.158 0.00 0.00 0.00 4.30
3044 3517 1.619669 GGGGATGGTCAAGGGAGGT 60.620 63.158 0.00 0.00 0.00 3.85
3045 3518 1.214992 GGGGATGGTCAAGGGAGGTT 61.215 60.000 0.00 0.00 0.00 3.50
3046 3519 0.256177 GGGATGGTCAAGGGAGGTTC 59.744 60.000 0.00 0.00 0.00 3.62
3047 3520 0.256177 GGATGGTCAAGGGAGGTTCC 59.744 60.000 0.00 0.00 35.23 3.62
3056 3529 4.920828 GGAGGTTCCCACAAGCAA 57.079 55.556 0.00 0.00 0.00 3.91
3057 3530 2.646121 GGAGGTTCCCACAAGCAAG 58.354 57.895 0.00 0.00 0.00 4.01
3058 3531 1.527433 GGAGGTTCCCACAAGCAAGC 61.527 60.000 0.00 0.00 0.00 4.01
3059 3532 1.856265 GAGGTTCCCACAAGCAAGCG 61.856 60.000 0.00 0.00 0.00 4.68
3060 3533 2.050077 GTTCCCACAAGCAAGCGC 60.050 61.111 0.00 0.00 38.99 5.92
3061 3534 2.518112 TTCCCACAAGCAAGCGCA 60.518 55.556 11.47 0.00 42.27 6.09
3062 3535 2.844451 TTCCCACAAGCAAGCGCAC 61.844 57.895 11.47 0.00 42.27 5.34
3063 3536 4.347453 CCCACAAGCAAGCGCACC 62.347 66.667 11.47 0.00 42.27 5.01
3064 3537 3.289834 CCACAAGCAAGCGCACCT 61.290 61.111 11.47 0.00 42.27 4.00
3065 3538 2.723746 CACAAGCAAGCGCACCTT 59.276 55.556 11.47 5.72 42.27 3.50
3066 3539 1.514678 CCACAAGCAAGCGCACCTTA 61.515 55.000 11.47 0.00 42.27 2.69
3067 3540 0.110056 CACAAGCAAGCGCACCTTAG 60.110 55.000 11.47 6.42 42.27 2.18
3068 3541 0.535102 ACAAGCAAGCGCACCTTAGT 60.535 50.000 11.47 7.00 42.27 2.24
3080 3553 2.755650 CACCTTAGTGCAAGAAGACGT 58.244 47.619 9.84 0.00 37.14 4.34
3081 3554 3.909430 CACCTTAGTGCAAGAAGACGTA 58.091 45.455 9.84 0.00 37.14 3.57
3082 3555 3.673809 CACCTTAGTGCAAGAAGACGTAC 59.326 47.826 9.84 0.00 37.14 3.67
3083 3556 3.573110 ACCTTAGTGCAAGAAGACGTACT 59.427 43.478 9.84 0.00 36.22 2.73
3084 3557 4.167268 CCTTAGTGCAAGAAGACGTACTC 58.833 47.826 9.84 0.00 36.22 2.59
3085 3558 2.726832 AGTGCAAGAAGACGTACTCC 57.273 50.000 0.00 0.00 0.00 3.85
3086 3559 1.961394 AGTGCAAGAAGACGTACTCCA 59.039 47.619 0.00 0.00 0.00 3.86
3087 3560 2.563179 AGTGCAAGAAGACGTACTCCAT 59.437 45.455 0.00 0.00 0.00 3.41
3088 3561 2.924290 GTGCAAGAAGACGTACTCCATC 59.076 50.000 0.00 0.00 0.00 3.51
3089 3562 2.560981 TGCAAGAAGACGTACTCCATCA 59.439 45.455 0.00 0.00 0.00 3.07
3090 3563 2.924290 GCAAGAAGACGTACTCCATCAC 59.076 50.000 0.00 0.00 0.00 3.06
3091 3564 3.512680 CAAGAAGACGTACTCCATCACC 58.487 50.000 0.00 0.00 0.00 4.02
3092 3565 2.100989 AGAAGACGTACTCCATCACCC 58.899 52.381 0.00 0.00 0.00 4.61
3093 3566 1.136500 GAAGACGTACTCCATCACCCC 59.864 57.143 0.00 0.00 0.00 4.95
3094 3567 0.335361 AGACGTACTCCATCACCCCT 59.665 55.000 0.00 0.00 0.00 4.79
3095 3568 0.460311 GACGTACTCCATCACCCCTG 59.540 60.000 0.00 0.00 0.00 4.45
3096 3569 0.976073 ACGTACTCCATCACCCCTGG 60.976 60.000 0.00 0.00 34.93 4.45
3097 3570 0.686441 CGTACTCCATCACCCCTGGA 60.686 60.000 0.00 0.00 40.49 3.86
3098 3571 1.807814 GTACTCCATCACCCCTGGAT 58.192 55.000 0.00 0.00 41.83 3.41
3099 3572 1.694696 GTACTCCATCACCCCTGGATC 59.305 57.143 0.00 0.00 41.83 3.36
3100 3573 0.044702 ACTCCATCACCCCTGGATCA 59.955 55.000 0.00 0.00 41.83 2.92
3101 3574 1.345838 ACTCCATCACCCCTGGATCAT 60.346 52.381 0.00 0.00 41.83 2.45
3102 3575 1.779092 CTCCATCACCCCTGGATCATT 59.221 52.381 0.00 0.00 41.83 2.57
3103 3576 1.496001 TCCATCACCCCTGGATCATTG 59.504 52.381 0.00 0.00 37.87 2.82
3104 3577 1.325355 CATCACCCCTGGATCATTGC 58.675 55.000 0.00 0.00 0.00 3.56
3105 3578 1.133575 CATCACCCCTGGATCATTGCT 60.134 52.381 0.00 0.00 0.00 3.91
3106 3579 1.002069 TCACCCCTGGATCATTGCTT 58.998 50.000 0.00 0.00 0.00 3.91
3107 3580 1.108776 CACCCCTGGATCATTGCTTG 58.891 55.000 0.00 0.00 0.00 4.01
3108 3581 1.002069 ACCCCTGGATCATTGCTTGA 58.998 50.000 0.00 0.00 39.12 3.02
3110 3583 2.785269 ACCCCTGGATCATTGCTTGATA 59.215 45.455 0.00 0.00 45.29 2.15
3111 3584 3.400322 ACCCCTGGATCATTGCTTGATAT 59.600 43.478 0.00 0.00 45.29 1.63
3112 3585 3.762288 CCCCTGGATCATTGCTTGATATG 59.238 47.826 0.00 0.00 45.29 1.78
3113 3586 3.762288 CCCTGGATCATTGCTTGATATGG 59.238 47.826 0.00 5.96 45.29 2.74
3114 3587 4.507869 CCCTGGATCATTGCTTGATATGGA 60.508 45.833 0.00 0.00 45.29 3.41
3115 3588 4.700692 CCTGGATCATTGCTTGATATGGAG 59.299 45.833 0.00 0.00 45.29 3.86
3116 3589 4.659115 TGGATCATTGCTTGATATGGAGG 58.341 43.478 0.00 0.00 45.29 4.30
3117 3590 4.351704 TGGATCATTGCTTGATATGGAGGA 59.648 41.667 0.00 0.00 45.29 3.71
3118 3591 4.699257 GGATCATTGCTTGATATGGAGGAC 59.301 45.833 0.00 0.00 45.29 3.85
3119 3592 4.776435 TCATTGCTTGATATGGAGGACA 57.224 40.909 0.00 0.00 0.00 4.02
3120 3593 5.114764 TCATTGCTTGATATGGAGGACAA 57.885 39.130 0.00 0.00 0.00 3.18
3121 3594 4.883585 TCATTGCTTGATATGGAGGACAAC 59.116 41.667 0.00 0.00 0.00 3.32
3122 3595 3.998913 TGCTTGATATGGAGGACAACA 57.001 42.857 0.00 0.00 0.00 3.33
3123 3596 3.877559 TGCTTGATATGGAGGACAACAG 58.122 45.455 0.00 0.00 0.00 3.16
3124 3597 3.264193 TGCTTGATATGGAGGACAACAGT 59.736 43.478 0.00 0.00 0.00 3.55
3125 3598 4.469586 TGCTTGATATGGAGGACAACAGTA 59.530 41.667 0.00 0.00 0.00 2.74
3126 3599 5.053145 GCTTGATATGGAGGACAACAGTAG 58.947 45.833 0.00 0.00 0.00 2.57
3127 3600 4.672587 TGATATGGAGGACAACAGTAGC 57.327 45.455 0.00 0.00 0.00 3.58
3128 3601 4.030216 TGATATGGAGGACAACAGTAGCA 58.970 43.478 0.00 0.00 0.00 3.49
3129 3602 2.770164 ATGGAGGACAACAGTAGCAC 57.230 50.000 0.00 0.00 0.00 4.40
3130 3603 1.419381 TGGAGGACAACAGTAGCACA 58.581 50.000 0.00 0.00 0.00 4.57
3131 3604 1.765904 TGGAGGACAACAGTAGCACAA 59.234 47.619 0.00 0.00 0.00 3.33
3132 3605 2.143925 GGAGGACAACAGTAGCACAAC 58.856 52.381 0.00 0.00 0.00 3.32
3133 3606 2.143925 GAGGACAACAGTAGCACAACC 58.856 52.381 0.00 0.00 0.00 3.77
3134 3607 1.202770 AGGACAACAGTAGCACAACCC 60.203 52.381 0.00 0.00 0.00 4.11
3135 3608 1.202770 GGACAACAGTAGCACAACCCT 60.203 52.381 0.00 0.00 0.00 4.34
3136 3609 1.873591 GACAACAGTAGCACAACCCTG 59.126 52.381 0.00 0.00 0.00 4.45
3137 3610 1.488812 ACAACAGTAGCACAACCCTGA 59.511 47.619 0.00 0.00 0.00 3.86
3138 3611 2.092646 ACAACAGTAGCACAACCCTGAA 60.093 45.455 0.00 0.00 0.00 3.02
3139 3612 3.149196 CAACAGTAGCACAACCCTGAAT 58.851 45.455 0.00 0.00 0.00 2.57
3140 3613 3.508845 ACAGTAGCACAACCCTGAATT 57.491 42.857 0.00 0.00 0.00 2.17
3141 3614 3.149196 ACAGTAGCACAACCCTGAATTG 58.851 45.455 0.00 0.00 0.00 2.32
3142 3615 2.489329 CAGTAGCACAACCCTGAATTGG 59.511 50.000 0.00 0.00 0.00 3.16
3143 3616 2.108250 AGTAGCACAACCCTGAATTGGT 59.892 45.455 0.00 0.00 37.85 3.67
3144 3617 1.331214 AGCACAACCCTGAATTGGTG 58.669 50.000 0.00 0.00 35.88 4.17
3145 3618 1.133513 AGCACAACCCTGAATTGGTGA 60.134 47.619 0.00 0.00 35.88 4.02
3146 3619 1.000274 GCACAACCCTGAATTGGTGAC 60.000 52.381 0.00 0.00 35.88 3.67
3147 3620 2.305928 CACAACCCTGAATTGGTGACA 58.694 47.619 0.00 0.00 35.88 3.58
3148 3621 2.034558 CACAACCCTGAATTGGTGACAC 59.965 50.000 0.00 0.00 42.67 3.67
3149 3622 1.613437 CAACCCTGAATTGGTGACACC 59.387 52.381 18.28 18.28 42.67 4.16
3150 3623 0.112412 ACCCTGAATTGGTGACACCC 59.888 55.000 22.00 6.90 42.67 4.61
3151 3624 0.611896 CCCTGAATTGGTGACACCCC 60.612 60.000 22.00 8.98 42.67 4.95
3152 3625 0.611896 CCTGAATTGGTGACACCCCC 60.612 60.000 22.00 8.64 42.67 5.40
3153 3626 0.405585 CTGAATTGGTGACACCCCCT 59.594 55.000 22.00 5.67 42.67 4.79
3154 3627 1.633432 CTGAATTGGTGACACCCCCTA 59.367 52.381 22.00 5.31 42.67 3.53
3155 3628 2.242196 CTGAATTGGTGACACCCCCTAT 59.758 50.000 22.00 7.39 42.67 2.57
3156 3629 2.652348 TGAATTGGTGACACCCCCTATT 59.348 45.455 22.00 14.78 42.67 1.73
3157 3630 3.076785 TGAATTGGTGACACCCCCTATTT 59.923 43.478 22.00 5.92 42.67 1.40
3158 3631 2.595750 TTGGTGACACCCCCTATTTG 57.404 50.000 22.00 0.00 42.67 2.32
3159 3632 0.701731 TGGTGACACCCCCTATTTGG 59.298 55.000 22.00 0.00 37.50 3.28
3160 3633 2.747831 TGGTGACACCCCCTATTTGGG 61.748 57.143 22.00 0.00 46.57 4.12
3174 3647 5.660460 CCTATTTGGGACCTAAAAATGTGC 58.340 41.667 7.15 0.00 0.00 4.57
3175 3648 5.422012 CCTATTTGGGACCTAAAAATGTGCT 59.578 40.000 7.15 0.00 0.00 4.40
3176 3649 4.864704 TTTGGGACCTAAAAATGTGCTC 57.135 40.909 0.00 0.00 0.00 4.26
3177 3650 3.517296 TGGGACCTAAAAATGTGCTCA 57.483 42.857 0.00 0.00 0.00 4.26
3178 3651 3.838565 TGGGACCTAAAAATGTGCTCAA 58.161 40.909 0.00 0.00 0.00 3.02
3179 3652 4.219115 TGGGACCTAAAAATGTGCTCAAA 58.781 39.130 0.00 0.00 0.00 2.69
3180 3653 4.280677 TGGGACCTAAAAATGTGCTCAAAG 59.719 41.667 0.00 0.00 0.00 2.77
3181 3654 4.280929 GGGACCTAAAAATGTGCTCAAAGT 59.719 41.667 0.00 0.00 0.00 2.66
3182 3655 5.475564 GGGACCTAAAAATGTGCTCAAAGTA 59.524 40.000 0.00 0.00 0.00 2.24
3183 3656 6.379386 GGACCTAAAAATGTGCTCAAAGTAC 58.621 40.000 0.00 0.00 0.00 2.73
3184 3657 6.016610 GGACCTAAAAATGTGCTCAAAGTACA 60.017 38.462 0.38 0.38 44.59 2.90
3185 3658 7.341445 ACCTAAAAATGTGCTCAAAGTACAA 57.659 32.000 2.04 0.00 43.74 2.41
3186 3659 7.200455 ACCTAAAAATGTGCTCAAAGTACAAC 58.800 34.615 2.04 0.00 43.74 3.32
3187 3660 6.359617 CCTAAAAATGTGCTCAAAGTACAACG 59.640 38.462 2.04 0.00 43.74 4.10
3188 3661 3.896648 AATGTGCTCAAAGTACAACGG 57.103 42.857 2.04 0.00 43.74 4.44
3189 3662 0.941542 TGTGCTCAAAGTACAACGGC 59.058 50.000 0.00 0.00 37.88 5.68
3190 3663 0.237498 GTGCTCAAAGTACAACGGCC 59.763 55.000 0.00 0.00 30.80 6.13
3191 3664 0.107831 TGCTCAAAGTACAACGGCCT 59.892 50.000 0.00 0.00 0.00 5.19
3192 3665 1.345089 TGCTCAAAGTACAACGGCCTA 59.655 47.619 0.00 0.00 0.00 3.93
3193 3666 2.027561 TGCTCAAAGTACAACGGCCTAT 60.028 45.455 0.00 0.00 0.00 2.57
3194 3667 3.007635 GCTCAAAGTACAACGGCCTATT 58.992 45.455 0.00 0.00 0.00 1.73
3195 3668 3.439129 GCTCAAAGTACAACGGCCTATTT 59.561 43.478 0.00 0.00 0.00 1.40
3196 3669 4.632688 GCTCAAAGTACAACGGCCTATTTA 59.367 41.667 0.00 0.00 0.00 1.40
3197 3670 5.220605 GCTCAAAGTACAACGGCCTATTTAG 60.221 44.000 0.00 0.00 0.00 1.85
3198 3671 5.180271 TCAAAGTACAACGGCCTATTTAGG 58.820 41.667 0.00 0.00 46.42 2.69
3363 3836 9.986833 ATGTTTAGCTTGTTTTCAAAAATGTTC 57.013 25.926 0.00 0.00 39.47 3.18
3364 3837 8.993121 TGTTTAGCTTGTTTTCAAAAATGTTCA 58.007 25.926 0.00 0.00 39.47 3.18
3365 3838 9.261318 GTTTAGCTTGTTTTCAAAAATGTTCAC 57.739 29.630 0.00 0.00 39.47 3.18
3366 3839 8.770438 TTAGCTTGTTTTCAAAAATGTTCACT 57.230 26.923 0.00 0.00 39.47 3.41
3367 3840 7.064060 AGCTTGTTTTCAAAAATGTTCACTG 57.936 32.000 0.00 0.00 39.47 3.66
3368 3841 6.650390 AGCTTGTTTTCAAAAATGTTCACTGT 59.350 30.769 0.00 0.00 39.47 3.55
3369 3842 7.173047 AGCTTGTTTTCAAAAATGTTCACTGTT 59.827 29.630 0.00 0.00 39.47 3.16
3370 3843 8.439286 GCTTGTTTTCAAAAATGTTCACTGTTA 58.561 29.630 0.00 0.00 39.47 2.41
3371 3844 9.739786 CTTGTTTTCAAAAATGTTCACTGTTAC 57.260 29.630 0.00 0.00 39.47 2.50
3372 3845 8.818141 TGTTTTCAAAAATGTTCACTGTTACA 57.182 26.923 0.00 0.00 0.00 2.41
3373 3846 9.261180 TGTTTTCAAAAATGTTCACTGTTACAA 57.739 25.926 0.00 0.00 0.00 2.41
3374 3847 9.523730 GTTTTCAAAAATGTTCACTGTTACAAC 57.476 29.630 0.00 0.00 0.00 3.32
3375 3848 8.818141 TTTCAAAAATGTTCACTGTTACAACA 57.182 26.923 0.00 0.00 37.37 3.33
3376 3849 8.818141 TTCAAAAATGTTCACTGTTACAACAA 57.182 26.923 0.00 0.00 38.66 2.83
3377 3850 8.994429 TCAAAAATGTTCACTGTTACAACAAT 57.006 26.923 0.00 0.00 38.66 2.71
3383 3856 9.677567 AATGTTCACTGTTACAACAATATGTTC 57.322 29.630 0.00 0.00 38.77 3.18
3384 3857 8.214721 TGTTCACTGTTACAACAATATGTTCA 57.785 30.769 0.00 0.00 38.77 3.18
3385 3858 8.845227 TGTTCACTGTTACAACAATATGTTCAT 58.155 29.630 0.00 0.00 38.77 2.57
3386 3859 9.677567 GTTCACTGTTACAACAATATGTTCATT 57.322 29.630 0.00 0.00 38.77 2.57
3387 3860 9.891828 TTCACTGTTACAACAATATGTTCATTC 57.108 29.630 0.00 0.00 38.77 2.67
3388 3861 9.283768 TCACTGTTACAACAATATGTTCATTCT 57.716 29.630 0.00 0.00 38.77 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.415374 GTGTAACGTGCACAGTCGAT 58.585 50.000 18.64 0.00 36.88 3.59
25 26 2.876052 GTGTAACGTGCACAGTCGA 58.124 52.632 18.64 5.17 36.88 4.20
63 64 1.312371 AAATGGGTCGTGGATTGGCG 61.312 55.000 0.00 0.00 0.00 5.69
70 71 1.627864 AAGGGAAAAATGGGTCGTGG 58.372 50.000 0.00 0.00 0.00 4.94
71 72 2.625790 TGAAAGGGAAAAATGGGTCGTG 59.374 45.455 0.00 0.00 0.00 4.35
72 73 2.952116 TGAAAGGGAAAAATGGGTCGT 58.048 42.857 0.00 0.00 0.00 4.34
73 74 4.329462 TTTGAAAGGGAAAAATGGGTCG 57.671 40.909 0.00 0.00 0.00 4.79
74 75 4.515191 GCTTTTGAAAGGGAAAAATGGGTC 59.485 41.667 5.70 0.00 36.53 4.46
75 76 4.460263 GCTTTTGAAAGGGAAAAATGGGT 58.540 39.130 5.70 0.00 36.53 4.51
76 77 3.820467 GGCTTTTGAAAGGGAAAAATGGG 59.180 43.478 5.70 0.00 36.53 4.00
84 86 1.460273 GCGGTGGCTTTTGAAAGGGA 61.460 55.000 5.70 0.00 36.53 4.20
102 104 2.793232 CGTACTTGCTTATCTTACCGGC 59.207 50.000 0.00 0.00 0.00 6.13
139 144 1.477700 ACTTGCTTGCTTTGCTTGTGA 59.522 42.857 0.00 0.00 0.00 3.58
226 238 4.277593 TTTGCCGCTTTGCACCGG 62.278 61.111 13.62 13.62 46.94 5.28
490 533 1.611006 TCACTGTCTGTCTCTCACTGC 59.389 52.381 0.00 0.00 0.00 4.40
515 560 6.100424 AGACTTCATTATTTACCCCCTCTCTG 59.900 42.308 0.00 0.00 0.00 3.35
520 565 5.736616 AGGAAGACTTCATTATTTACCCCCT 59.263 40.000 16.85 0.00 0.00 4.79
521 566 5.828328 CAGGAAGACTTCATTATTTACCCCC 59.172 44.000 16.85 0.00 0.00 5.40
522 567 5.299531 GCAGGAAGACTTCATTATTTACCCC 59.700 44.000 16.85 0.00 0.00 4.95
523 568 6.122964 AGCAGGAAGACTTCATTATTTACCC 58.877 40.000 16.85 0.00 0.00 3.69
542 589 2.169978 TCCAAGTCATGAGATGAGCAGG 59.830 50.000 0.00 0.00 40.53 4.85
580 627 3.127533 CGCTCTTTTCCCTGGCCG 61.128 66.667 0.00 0.00 0.00 6.13
582 629 3.443925 GCCGCTCTTTTCCCTGGC 61.444 66.667 0.00 0.00 35.04 4.85
645 692 2.733593 GACACTCGACACACGCCC 60.734 66.667 0.00 0.00 42.26 6.13
648 695 2.636227 GCACGACACTCGACACACG 61.636 63.158 0.00 0.00 43.74 4.49
649 696 2.636227 CGCACGACACTCGACACAC 61.636 63.158 0.00 0.00 43.74 3.82
650 697 2.353030 CGCACGACACTCGACACA 60.353 61.111 0.00 0.00 43.74 3.72
651 698 2.353145 ACGCACGACACTCGACAC 60.353 61.111 0.00 0.00 43.74 3.67
652 699 2.353030 CACGCACGACACTCGACA 60.353 61.111 0.00 0.00 43.74 4.35
654 701 4.994201 GCCACGCACGACACTCGA 62.994 66.667 0.00 0.00 43.74 4.04
657 704 3.911698 TGAGCCACGCACGACACT 61.912 61.111 0.00 0.00 0.00 3.55
671 720 3.429547 CCCCTACTCATTTGACTCGTGAG 60.430 52.174 0.00 0.00 43.76 3.51
673 722 2.893637 CCCCTACTCATTTGACTCGTG 58.106 52.381 0.00 0.00 0.00 4.35
828 903 0.996762 GAGAGGGAGAGGGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
829 904 0.998945 AGAGAGGGAGAGGGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
830 905 0.996762 GAGAGAGGGAGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
831 906 0.998945 AGAGAGAGGGAGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
832 907 0.933700 AAGAGAGAGGGAGAGGGAGG 59.066 60.000 0.00 0.00 0.00 4.30
833 908 2.387757 CAAAGAGAGAGGGAGAGGGAG 58.612 57.143 0.00 0.00 0.00 4.30
834 909 1.621072 GCAAAGAGAGAGGGAGAGGGA 60.621 57.143 0.00 0.00 0.00 4.20
835 910 0.829990 GCAAAGAGAGAGGGAGAGGG 59.170 60.000 0.00 0.00 0.00 4.30
836 911 0.829990 GGCAAAGAGAGAGGGAGAGG 59.170 60.000 0.00 0.00 0.00 3.69
837 912 0.829990 GGGCAAAGAGAGAGGGAGAG 59.170 60.000 0.00 0.00 0.00 3.20
860 939 4.344865 GCCACCGGAAAGGCTGGA 62.345 66.667 23.56 0.00 46.81 3.86
874 953 1.697432 GCAGGGGTGTATACATAGCCA 59.303 52.381 9.18 0.00 35.27 4.75
969 1054 4.630644 AATGACAAGCTGAGGAAGAAGA 57.369 40.909 0.00 0.00 0.00 2.87
1061 1152 1.071299 CAGTGCACACCCTACAGCA 59.929 57.895 21.04 0.00 34.10 4.41
1062 1153 2.328099 GCAGTGCACACCCTACAGC 61.328 63.158 21.04 5.78 0.00 4.40
1063 1154 0.952497 CAGCAGTGCACACCCTACAG 60.952 60.000 21.04 0.00 0.00 2.74
1107 1227 2.052237 CAAACTGTGTGGCGTCGC 60.052 61.111 9.22 9.22 0.00 5.19
1114 1234 1.384525 TTCGAACCCCAAACTGTGTG 58.615 50.000 0.00 0.00 0.00 3.82
1116 1236 2.504367 AGATTCGAACCCCAAACTGTG 58.496 47.619 0.00 0.00 0.00 3.66
1139 1260 0.450583 CAGCGCACATTGCAGAAGAT 59.549 50.000 11.47 0.00 45.36 2.40
1140 1261 1.871077 CAGCGCACATTGCAGAAGA 59.129 52.632 11.47 0.00 45.36 2.87
1141 1262 1.800315 GCAGCGCACATTGCAGAAG 60.800 57.895 11.47 0.00 45.36 2.85
1142 1263 2.256158 GCAGCGCACATTGCAGAA 59.744 55.556 11.47 0.00 45.36 3.02
1143 1264 2.670592 AGCAGCGCACATTGCAGA 60.671 55.556 19.79 0.00 45.36 4.26
1144 1265 2.504026 CAGCAGCGCACATTGCAG 60.504 61.111 19.79 9.45 45.36 4.41
1159 1280 2.038952 TGGAAGAGAACACATCCACCAG 59.961 50.000 0.00 0.00 37.05 4.00
1163 1284 2.705658 ACAGTGGAAGAGAACACATCCA 59.294 45.455 0.00 0.00 39.99 3.41
1226 1392 1.474332 AACATGCACTTTGCTGGGGG 61.474 55.000 0.00 0.00 45.31 5.40
1248 1414 2.120232 CTGAACAGTCGTATCCGATGC 58.880 52.381 0.00 0.00 46.30 3.91
1270 1436 1.921243 AACGCAAAACTTTCAGGTGC 58.079 45.000 0.00 0.00 0.00 5.01
1346 1533 1.072015 GGAGCAGAGGAATCATGGAGG 59.928 57.143 0.00 0.00 0.00 4.30
1350 1537 1.595466 GCTGGAGCAGAGGAATCATG 58.405 55.000 0.00 0.00 41.59 3.07
1386 1576 3.897239 TCTTCCTCAAGCAAGAACCAAA 58.103 40.909 0.00 0.00 0.00 3.28
1387 1577 3.576078 TCTTCCTCAAGCAAGAACCAA 57.424 42.857 0.00 0.00 0.00 3.67
1388 1578 3.136443 TCTTCTTCCTCAAGCAAGAACCA 59.864 43.478 0.00 0.00 34.39 3.67
1389 1579 3.500299 GTCTTCTTCCTCAAGCAAGAACC 59.500 47.826 0.00 0.00 34.39 3.62
1394 1584 3.415212 CATGGTCTTCTTCCTCAAGCAA 58.585 45.455 0.00 0.00 0.00 3.91
1409 1599 1.315257 AAATCCCTGTGCGCATGGTC 61.315 55.000 24.22 9.78 32.98 4.02
1418 1608 3.573967 ACCAACTTGCTTAAATCCCTGTG 59.426 43.478 0.00 0.00 0.00 3.66
1443 1633 3.796504 GCCTGACACAAGACCAAACAATG 60.797 47.826 0.00 0.00 0.00 2.82
1444 1634 2.362077 GCCTGACACAAGACCAAACAAT 59.638 45.455 0.00 0.00 0.00 2.71
1450 1640 2.280797 GCGCCTGACACAAGACCA 60.281 61.111 0.00 0.00 0.00 4.02
1451 1641 2.280797 TGCGCCTGACACAAGACC 60.281 61.111 4.18 0.00 0.00 3.85
1452 1642 2.320587 CCTGCGCCTGACACAAGAC 61.321 63.158 4.18 0.00 0.00 3.01
1455 1645 1.672030 CATCCTGCGCCTGACACAA 60.672 57.895 4.18 0.00 0.00 3.33
1460 1651 2.580815 CAGTCATCCTGCGCCTGA 59.419 61.111 4.18 0.58 33.59 3.86
1538 1729 1.139095 CGGCTCGAAGTACTGGGTC 59.861 63.158 0.00 0.00 0.00 4.46
1656 1847 1.597742 ATGCTGTTGTGTGTGAGTCC 58.402 50.000 0.00 0.00 0.00 3.85
1660 1853 4.582240 TGGAAATAATGCTGTTGTGTGTGA 59.418 37.500 0.00 0.00 0.00 3.58
1661 1854 4.869215 TGGAAATAATGCTGTTGTGTGTG 58.131 39.130 0.00 0.00 0.00 3.82
1664 1857 5.711506 TGATCTGGAAATAATGCTGTTGTGT 59.288 36.000 0.00 0.00 0.00 3.72
1669 1877 6.182627 TCAGTTGATCTGGAAATAATGCTGT 58.817 36.000 0.00 0.00 43.76 4.40
1672 1880 6.690194 ACTCAGTTGATCTGGAAATAATGC 57.310 37.500 0.00 0.00 43.76 3.56
1679 1887 4.516698 GCTGAAAACTCAGTTGATCTGGAA 59.483 41.667 0.00 0.00 43.76 3.53
1689 1897 2.216898 GTCAGCTGCTGAAAACTCAGT 58.783 47.619 31.88 0.00 42.46 3.41
1698 1906 1.066645 ACATTGATCGTCAGCTGCTGA 60.067 47.619 27.35 27.35 38.25 4.26
1759 1967 1.554042 TTTGCGTTCGGCTTCTCGTC 61.554 55.000 0.00 0.00 44.05 4.20
1798 2006 2.736826 CCTTCTTCCTCCTCCCGGC 61.737 68.421 0.00 0.00 0.00 6.13
1847 2055 0.679321 CTCCTTCTTCCCTTGCTGGC 60.679 60.000 0.00 0.00 0.00 4.85
1988 2199 9.657419 ACAGATTATTAGCAAAAATGAAAAGGG 57.343 29.630 0.00 0.00 0.00 3.95
2037 2248 5.405935 AAAAGTAAATCCACTTGGCATCC 57.594 39.130 0.00 0.00 38.74 3.51
2088 2301 1.200020 CGGGAAACTAGCCAAAGCAAG 59.800 52.381 0.00 0.00 43.56 4.01
2162 2390 7.119387 TCTTTCTGGAAAGGAAAAGAAGTTCT 58.881 34.615 19.02 0.00 45.80 3.01
2165 2393 8.996651 TTATCTTTCTGGAAAGGAAAAGAAGT 57.003 30.769 19.02 2.68 45.80 3.01
2288 2516 9.750125 CACTAGCCTAATTTTTCTTTTGAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
2289 2517 8.914011 ACACTAGCCTAATTTTTCTTTTGAGTT 58.086 29.630 0.00 0.00 0.00 3.01
2290 2518 8.465273 ACACTAGCCTAATTTTTCTTTTGAGT 57.535 30.769 0.00 0.00 0.00 3.41
2291 2519 9.185192 CAACACTAGCCTAATTTTTCTTTTGAG 57.815 33.333 0.00 0.00 0.00 3.02
2292 2520 8.141268 CCAACACTAGCCTAATTTTTCTTTTGA 58.859 33.333 0.00 0.00 0.00 2.69
2293 2521 8.141268 TCCAACACTAGCCTAATTTTTCTTTTG 58.859 33.333 0.00 0.00 0.00 2.44
2294 2522 8.245195 TCCAACACTAGCCTAATTTTTCTTTT 57.755 30.769 0.00 0.00 0.00 2.27
2295 2523 7.833285 TCCAACACTAGCCTAATTTTTCTTT 57.167 32.000 0.00 0.00 0.00 2.52
2296 2524 7.833285 TTCCAACACTAGCCTAATTTTTCTT 57.167 32.000 0.00 0.00 0.00 2.52
2297 2525 7.451566 ACATTCCAACACTAGCCTAATTTTTCT 59.548 33.333 0.00 0.00 0.00 2.52
2298 2526 7.602753 ACATTCCAACACTAGCCTAATTTTTC 58.397 34.615 0.00 0.00 0.00 2.29
2299 2527 7.539034 ACATTCCAACACTAGCCTAATTTTT 57.461 32.000 0.00 0.00 0.00 1.94
2300 2528 7.015195 ACAACATTCCAACACTAGCCTAATTTT 59.985 33.333 0.00 0.00 0.00 1.82
2301 2529 6.493458 ACAACATTCCAACACTAGCCTAATTT 59.507 34.615 0.00 0.00 0.00 1.82
2302 2530 6.010219 ACAACATTCCAACACTAGCCTAATT 58.990 36.000 0.00 0.00 0.00 1.40
2308 2536 3.146066 TCCACAACATTCCAACACTAGC 58.854 45.455 0.00 0.00 0.00 3.42
2309 2537 5.241506 ACAATCCACAACATTCCAACACTAG 59.758 40.000 0.00 0.00 0.00 2.57
2310 2538 5.009510 CACAATCCACAACATTCCAACACTA 59.990 40.000 0.00 0.00 0.00 2.74
2313 2541 3.069300 CCACAATCCACAACATTCCAACA 59.931 43.478 0.00 0.00 0.00 3.33
2327 2555 1.017387 GGTCGATCTTGCCACAATCC 58.983 55.000 0.00 0.00 0.00 3.01
2366 2594 2.878580 TCTGCAAGCACAAAACACAAG 58.121 42.857 0.00 0.00 0.00 3.16
2379 2621 2.225963 CCTCAGCAACTTCTTCTGCAAG 59.774 50.000 0.00 0.00 41.17 4.01
2453 2695 6.657541 ACTCTGGATAAGAAGTCTCGGATATC 59.342 42.308 0.00 0.00 33.37 1.63
2734 3207 1.135972 CCTCACCAACATTTTCGCGAG 60.136 52.381 9.59 0.00 0.00 5.03
2736 3209 0.729140 GCCTCACCAACATTTTCGCG 60.729 55.000 0.00 0.00 0.00 5.87
2776 3249 4.623886 GCTTGTGTCCTTCATCACTGGATA 60.624 45.833 0.00 0.00 35.82 2.59
2786 3259 0.250467 GAGCAGGCTTGTGTCCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
2791 3264 0.250038 TCAGTGAGCAGGCTTGTGTC 60.250 55.000 0.00 0.00 0.00 3.67
2829 3302 3.981071 TTGAGATTGTGGGAGTCGAAT 57.019 42.857 0.00 0.00 0.00 3.34
2864 3337 4.829064 TTTTGAGTTTGTGGGAATCGAG 57.171 40.909 0.00 0.00 0.00 4.04
2869 3342 4.020662 GGGCATATTTTGAGTTTGTGGGAA 60.021 41.667 0.00 0.00 0.00 3.97
2877 3350 3.443681 CCGAACAGGGCATATTTTGAGTT 59.556 43.478 0.00 0.00 35.97 3.01
2878 3351 3.016736 CCGAACAGGGCATATTTTGAGT 58.983 45.455 0.00 0.00 35.97 3.41
2887 3360 3.864789 AAGATAATCCGAACAGGGCAT 57.135 42.857 0.00 0.00 41.52 4.40
2894 3367 8.728337 AGGTTTAAGGTAAAGATAATCCGAAC 57.272 34.615 0.00 0.00 0.00 3.95
2964 3437 2.322355 AGTGATGCCTGCTATGACAC 57.678 50.000 0.00 0.00 0.00 3.67
2972 3445 3.465742 TGAAGAGATAGTGATGCCTGC 57.534 47.619 0.00 0.00 0.00 4.85
2985 3458 5.451103 CGACATGAGAAGCCTTATGAAGAGA 60.451 44.000 0.00 0.00 38.31 3.10
2986 3459 4.744137 CGACATGAGAAGCCTTATGAAGAG 59.256 45.833 0.00 0.00 38.31 2.85
2993 3466 6.152323 AGTTACTTACGACATGAGAAGCCTTA 59.848 38.462 0.00 0.00 0.00 2.69
2994 3467 3.963428 ACTTACGACATGAGAAGCCTT 57.037 42.857 0.00 0.00 0.00 4.35
2995 3468 4.463186 AGTTACTTACGACATGAGAAGCCT 59.537 41.667 0.00 0.00 0.00 4.58
2996 3469 4.745649 AGTTACTTACGACATGAGAAGCC 58.254 43.478 0.00 0.00 0.00 4.35
2997 3470 5.399858 TGAGTTACTTACGACATGAGAAGC 58.600 41.667 0.00 0.00 0.00 3.86
2998 3471 9.227490 CTTATGAGTTACTTACGACATGAGAAG 57.773 37.037 0.00 0.00 35.88 2.85
2999 3472 8.953313 TCTTATGAGTTACTTACGACATGAGAA 58.047 33.333 0.00 0.00 37.69 2.87
3000 3473 8.502105 TCTTATGAGTTACTTACGACATGAGA 57.498 34.615 0.00 0.00 37.95 3.27
3001 3474 7.858382 CCTCTTATGAGTTACTTACGACATGAG 59.142 40.741 0.00 0.00 38.61 2.90
3002 3475 7.201794 CCCTCTTATGAGTTACTTACGACATGA 60.202 40.741 0.00 0.00 38.61 3.07
3003 3476 6.918569 CCCTCTTATGAGTTACTTACGACATG 59.081 42.308 5.03 0.00 38.61 3.21
3004 3477 6.040616 CCCCTCTTATGAGTTACTTACGACAT 59.959 42.308 5.03 0.00 38.61 3.06
3005 3478 5.359009 CCCCTCTTATGAGTTACTTACGACA 59.641 44.000 5.03 0.00 38.61 4.35
3006 3479 5.591877 TCCCCTCTTATGAGTTACTTACGAC 59.408 44.000 5.03 0.00 38.61 4.34
3007 3480 5.759059 TCCCCTCTTATGAGTTACTTACGA 58.241 41.667 5.03 0.00 38.61 3.43
3008 3481 6.448006 CATCCCCTCTTATGAGTTACTTACG 58.552 44.000 5.03 0.00 38.61 3.18
3009 3482 6.326843 ACCATCCCCTCTTATGAGTTACTTAC 59.673 42.308 5.03 0.00 38.61 2.34
3010 3483 6.449956 ACCATCCCCTCTTATGAGTTACTTA 58.550 40.000 5.03 0.00 38.61 2.24
3011 3484 5.289510 ACCATCCCCTCTTATGAGTTACTT 58.710 41.667 5.03 0.00 38.61 2.24
3012 3485 4.897051 ACCATCCCCTCTTATGAGTTACT 58.103 43.478 5.03 0.00 38.61 2.24
3013 3486 4.654262 TGACCATCCCCTCTTATGAGTTAC 59.346 45.833 5.03 0.00 38.61 2.50
3014 3487 4.890988 TGACCATCCCCTCTTATGAGTTA 58.109 43.478 5.03 0.00 38.61 2.24
3015 3488 3.736094 TGACCATCCCCTCTTATGAGTT 58.264 45.455 5.03 0.00 38.61 3.01
3016 3489 3.421394 TGACCATCCCCTCTTATGAGT 57.579 47.619 5.03 0.00 38.61 3.41
3017 3490 3.072184 CCTTGACCATCCCCTCTTATGAG 59.928 52.174 0.00 0.00 39.92 2.90
3018 3491 3.048600 CCTTGACCATCCCCTCTTATGA 58.951 50.000 0.00 0.00 0.00 2.15
3019 3492 2.107204 CCCTTGACCATCCCCTCTTATG 59.893 54.545 0.00 0.00 0.00 1.90
3020 3493 2.021042 TCCCTTGACCATCCCCTCTTAT 60.021 50.000 0.00 0.00 0.00 1.73
3021 3494 1.368203 TCCCTTGACCATCCCCTCTTA 59.632 52.381 0.00 0.00 0.00 2.10
3022 3495 0.121197 TCCCTTGACCATCCCCTCTT 59.879 55.000 0.00 0.00 0.00 2.85
3023 3496 0.327000 CTCCCTTGACCATCCCCTCT 60.327 60.000 0.00 0.00 0.00 3.69
3024 3497 1.348775 CCTCCCTTGACCATCCCCTC 61.349 65.000 0.00 0.00 0.00 4.30
3025 3498 1.308216 CCTCCCTTGACCATCCCCT 60.308 63.158 0.00 0.00 0.00 4.79
3026 3499 1.214992 AACCTCCCTTGACCATCCCC 61.215 60.000 0.00 0.00 0.00 4.81
3027 3500 0.256177 GAACCTCCCTTGACCATCCC 59.744 60.000 0.00 0.00 0.00 3.85
3028 3501 0.256177 GGAACCTCCCTTGACCATCC 59.744 60.000 0.00 0.00 0.00 3.51
3029 3502 3.884226 GGAACCTCCCTTGACCATC 57.116 57.895 0.00 0.00 0.00 3.51
3042 3515 3.558099 GCGCTTGCTTGTGGGAACC 62.558 63.158 0.00 0.00 42.91 3.62
3043 3516 2.050077 GCGCTTGCTTGTGGGAAC 60.050 61.111 0.00 0.00 35.07 3.62
3044 3517 2.518112 TGCGCTTGCTTGTGGGAA 60.518 55.556 9.73 0.00 40.12 3.97
3045 3518 3.286751 GTGCGCTTGCTTGTGGGA 61.287 61.111 9.73 0.00 40.12 4.37
3046 3519 4.347453 GGTGCGCTTGCTTGTGGG 62.347 66.667 9.73 0.00 40.12 4.61
3047 3520 1.514678 TAAGGTGCGCTTGCTTGTGG 61.515 55.000 9.73 0.00 40.12 4.17
3048 3521 0.110056 CTAAGGTGCGCTTGCTTGTG 60.110 55.000 9.73 0.00 40.12 3.33
3049 3522 0.535102 ACTAAGGTGCGCTTGCTTGT 60.535 50.000 9.73 0.00 40.12 3.16
3050 3523 0.110056 CACTAAGGTGCGCTTGCTTG 60.110 55.000 9.73 0.00 40.12 4.01
3051 3524 2.247790 CACTAAGGTGCGCTTGCTT 58.752 52.632 9.73 0.00 40.12 3.91
3052 3525 3.972227 CACTAAGGTGCGCTTGCT 58.028 55.556 9.73 0.00 40.12 3.91
3060 3533 2.755650 ACGTCTTCTTGCACTAAGGTG 58.244 47.619 7.24 0.00 45.53 4.00
3061 3534 3.573110 AGTACGTCTTCTTGCACTAAGGT 59.427 43.478 0.00 2.26 37.01 3.50
3062 3535 4.167268 GAGTACGTCTTCTTGCACTAAGG 58.833 47.826 0.00 0.00 37.01 2.69
3063 3536 4.167268 GGAGTACGTCTTCTTGCACTAAG 58.833 47.826 0.00 0.00 37.76 2.18
3064 3537 3.570975 TGGAGTACGTCTTCTTGCACTAA 59.429 43.478 0.00 0.00 0.00 2.24
3065 3538 3.151554 TGGAGTACGTCTTCTTGCACTA 58.848 45.455 0.00 0.00 0.00 2.74
3066 3539 1.961394 TGGAGTACGTCTTCTTGCACT 59.039 47.619 0.00 0.00 0.00 4.40
3067 3540 2.433868 TGGAGTACGTCTTCTTGCAC 57.566 50.000 0.00 0.00 0.00 4.57
3068 3541 2.560981 TGATGGAGTACGTCTTCTTGCA 59.439 45.455 0.00 0.00 36.05 4.08
3069 3542 2.924290 GTGATGGAGTACGTCTTCTTGC 59.076 50.000 0.00 0.00 36.05 4.01
3070 3543 3.512680 GGTGATGGAGTACGTCTTCTTG 58.487 50.000 0.00 0.00 36.05 3.02
3071 3544 2.496470 GGGTGATGGAGTACGTCTTCTT 59.504 50.000 0.00 0.00 36.05 2.52
3072 3545 2.100989 GGGTGATGGAGTACGTCTTCT 58.899 52.381 0.00 0.00 36.05 2.85
3073 3546 1.136500 GGGGTGATGGAGTACGTCTTC 59.864 57.143 0.00 0.00 36.05 2.87
3074 3547 1.192428 GGGGTGATGGAGTACGTCTT 58.808 55.000 0.00 0.00 36.05 3.01
3075 3548 0.335361 AGGGGTGATGGAGTACGTCT 59.665 55.000 0.00 0.00 36.05 4.18
3076 3549 0.460311 CAGGGGTGATGGAGTACGTC 59.540 60.000 0.00 0.00 35.60 4.34
3077 3550 0.976073 CCAGGGGTGATGGAGTACGT 60.976 60.000 0.00 0.00 40.51 3.57
3078 3551 0.686441 TCCAGGGGTGATGGAGTACG 60.686 60.000 0.00 0.00 41.96 3.67
3079 3552 3.317280 TCCAGGGGTGATGGAGTAC 57.683 57.895 0.00 0.00 41.96 2.73
3084 3557 1.991121 CAATGATCCAGGGGTGATGG 58.009 55.000 0.00 0.00 39.33 3.51
3085 3558 1.133575 AGCAATGATCCAGGGGTGATG 60.134 52.381 0.00 0.00 0.00 3.07
3086 3559 1.229131 AGCAATGATCCAGGGGTGAT 58.771 50.000 0.00 0.00 0.00 3.06
3087 3560 1.002069 AAGCAATGATCCAGGGGTGA 58.998 50.000 0.00 0.00 0.00 4.02
3088 3561 1.108776 CAAGCAATGATCCAGGGGTG 58.891 55.000 0.00 0.00 0.00 4.61
3089 3562 1.002069 TCAAGCAATGATCCAGGGGT 58.998 50.000 0.00 0.00 31.50 4.95
3090 3563 2.376695 ATCAAGCAATGATCCAGGGG 57.623 50.000 0.00 0.00 45.91 4.79
3091 3564 3.762288 CCATATCAAGCAATGATCCAGGG 59.238 47.826 8.14 1.04 45.91 4.45
3092 3565 4.659115 TCCATATCAAGCAATGATCCAGG 58.341 43.478 8.14 8.99 45.91 4.45
3093 3566 4.700692 CCTCCATATCAAGCAATGATCCAG 59.299 45.833 8.14 1.52 45.91 3.86
3094 3567 4.351704 TCCTCCATATCAAGCAATGATCCA 59.648 41.667 8.14 0.00 45.91 3.41
3095 3568 4.699257 GTCCTCCATATCAAGCAATGATCC 59.301 45.833 8.14 0.00 45.91 3.36
3096 3569 5.311265 TGTCCTCCATATCAAGCAATGATC 58.689 41.667 8.14 0.00 45.91 2.92
3098 3571 4.776435 TGTCCTCCATATCAAGCAATGA 57.224 40.909 0.00 0.00 43.67 2.57
3099 3572 4.641541 TGTTGTCCTCCATATCAAGCAATG 59.358 41.667 0.00 0.00 0.00 2.82
3100 3573 4.858850 TGTTGTCCTCCATATCAAGCAAT 58.141 39.130 0.00 0.00 0.00 3.56
3101 3574 4.263462 ACTGTTGTCCTCCATATCAAGCAA 60.263 41.667 0.00 0.00 0.00 3.91
3102 3575 3.264193 ACTGTTGTCCTCCATATCAAGCA 59.736 43.478 0.00 0.00 0.00 3.91
3103 3576 3.878778 ACTGTTGTCCTCCATATCAAGC 58.121 45.455 0.00 0.00 0.00 4.01
3104 3577 5.053145 GCTACTGTTGTCCTCCATATCAAG 58.947 45.833 0.00 0.00 0.00 3.02
3105 3578 4.469586 TGCTACTGTTGTCCTCCATATCAA 59.530 41.667 0.00 0.00 0.00 2.57
3106 3579 4.030216 TGCTACTGTTGTCCTCCATATCA 58.970 43.478 0.00 0.00 0.00 2.15
3107 3580 4.141937 TGTGCTACTGTTGTCCTCCATATC 60.142 45.833 0.00 0.00 0.00 1.63
3108 3581 3.774766 TGTGCTACTGTTGTCCTCCATAT 59.225 43.478 0.00 0.00 0.00 1.78
3109 3582 3.169908 TGTGCTACTGTTGTCCTCCATA 58.830 45.455 0.00 0.00 0.00 2.74
3110 3583 1.977854 TGTGCTACTGTTGTCCTCCAT 59.022 47.619 0.00 0.00 0.00 3.41
3111 3584 1.419381 TGTGCTACTGTTGTCCTCCA 58.581 50.000 0.00 0.00 0.00 3.86
3112 3585 2.143925 GTTGTGCTACTGTTGTCCTCC 58.856 52.381 0.00 0.00 0.00 4.30
3113 3586 2.143925 GGTTGTGCTACTGTTGTCCTC 58.856 52.381 0.00 0.00 0.00 3.71
3114 3587 1.202770 GGGTTGTGCTACTGTTGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
3115 3588 1.202770 AGGGTTGTGCTACTGTTGTCC 60.203 52.381 0.00 0.00 0.00 4.02
3116 3589 1.873591 CAGGGTTGTGCTACTGTTGTC 59.126 52.381 0.00 0.00 0.00 3.18
3117 3590 1.488812 TCAGGGTTGTGCTACTGTTGT 59.511 47.619 0.00 0.00 32.92 3.32
3118 3591 2.254546 TCAGGGTTGTGCTACTGTTG 57.745 50.000 0.00 0.00 32.92 3.33
3119 3592 3.508845 ATTCAGGGTTGTGCTACTGTT 57.491 42.857 0.00 0.00 32.92 3.16
3120 3593 3.149196 CAATTCAGGGTTGTGCTACTGT 58.851 45.455 0.00 0.00 32.92 3.55
3121 3594 2.489329 CCAATTCAGGGTTGTGCTACTG 59.511 50.000 0.00 0.00 0.00 2.74
3122 3595 2.108250 ACCAATTCAGGGTTGTGCTACT 59.892 45.455 0.00 0.00 34.10 2.57
3123 3596 2.228822 CACCAATTCAGGGTTGTGCTAC 59.771 50.000 0.00 0.00 36.19 3.58
3124 3597 2.107378 TCACCAATTCAGGGTTGTGCTA 59.893 45.455 0.00 0.00 36.19 3.49
3125 3598 1.133513 TCACCAATTCAGGGTTGTGCT 60.134 47.619 0.00 0.00 36.19 4.40
3126 3599 1.000274 GTCACCAATTCAGGGTTGTGC 60.000 52.381 0.00 0.00 36.19 4.57
3127 3600 2.034558 GTGTCACCAATTCAGGGTTGTG 59.965 50.000 0.00 0.00 36.19 3.33
3128 3601 2.306847 GTGTCACCAATTCAGGGTTGT 58.693 47.619 0.00 0.00 36.19 3.32
3129 3602 1.613437 GGTGTCACCAATTCAGGGTTG 59.387 52.381 17.59 0.00 38.42 3.77
3130 3603 1.480498 GGGTGTCACCAATTCAGGGTT 60.480 52.381 23.48 0.00 41.02 4.11
3131 3604 0.112412 GGGTGTCACCAATTCAGGGT 59.888 55.000 23.48 0.00 41.02 4.34
3132 3605 0.611896 GGGGTGTCACCAATTCAGGG 60.612 60.000 23.48 0.00 41.02 4.45
3133 3606 0.611896 GGGGGTGTCACCAATTCAGG 60.612 60.000 23.48 0.00 41.02 3.86
3134 3607 0.405585 AGGGGGTGTCACCAATTCAG 59.594 55.000 23.48 0.00 41.02 3.02
3135 3608 1.748732 TAGGGGGTGTCACCAATTCA 58.251 50.000 23.48 1.63 41.02 2.57
3136 3609 3.382083 AATAGGGGGTGTCACCAATTC 57.618 47.619 23.48 5.91 41.02 2.17
3137 3610 3.440127 CAAATAGGGGGTGTCACCAATT 58.560 45.455 23.48 13.29 41.02 2.32
3138 3611 2.292192 CCAAATAGGGGGTGTCACCAAT 60.292 50.000 23.48 10.73 41.02 3.16
3139 3612 1.076350 CCAAATAGGGGGTGTCACCAA 59.924 52.381 23.48 6.23 41.02 3.67
3140 3613 0.701731 CCAAATAGGGGGTGTCACCA 59.298 55.000 23.48 3.13 41.02 4.17
3141 3614 3.588742 CCAAATAGGGGGTGTCACC 57.411 57.895 14.13 14.13 37.60 4.02
3151 3624 5.422012 AGCACATTTTTAGGTCCCAAATAGG 59.578 40.000 0.00 0.00 37.03 2.57
3152 3625 6.152661 TGAGCACATTTTTAGGTCCCAAATAG 59.847 38.462 0.00 0.00 0.00 1.73
3153 3626 6.013379 TGAGCACATTTTTAGGTCCCAAATA 58.987 36.000 0.00 0.00 0.00 1.40
3154 3627 4.837860 TGAGCACATTTTTAGGTCCCAAAT 59.162 37.500 0.00 0.00 0.00 2.32
3155 3628 4.219115 TGAGCACATTTTTAGGTCCCAAA 58.781 39.130 0.00 0.00 0.00 3.28
3156 3629 3.838565 TGAGCACATTTTTAGGTCCCAA 58.161 40.909 0.00 0.00 0.00 4.12
3157 3630 3.517296 TGAGCACATTTTTAGGTCCCA 57.483 42.857 0.00 0.00 0.00 4.37
3158 3631 4.280929 ACTTTGAGCACATTTTTAGGTCCC 59.719 41.667 0.00 0.00 0.00 4.46
3159 3632 5.453567 ACTTTGAGCACATTTTTAGGTCC 57.546 39.130 0.00 0.00 0.00 4.46
3160 3633 6.966021 TGTACTTTGAGCACATTTTTAGGTC 58.034 36.000 0.00 0.00 0.00 3.85
3161 3634 6.952773 TGTACTTTGAGCACATTTTTAGGT 57.047 33.333 0.00 0.00 0.00 3.08
3162 3635 6.359617 CGTTGTACTTTGAGCACATTTTTAGG 59.640 38.462 0.00 0.00 0.00 2.69
3163 3636 6.359617 CCGTTGTACTTTGAGCACATTTTTAG 59.640 38.462 0.00 0.00 0.00 1.85
3164 3637 6.202937 CCGTTGTACTTTGAGCACATTTTTA 58.797 36.000 0.00 0.00 0.00 1.52
3165 3638 5.040635 CCGTTGTACTTTGAGCACATTTTT 58.959 37.500 0.00 0.00 0.00 1.94
3166 3639 4.606961 CCGTTGTACTTTGAGCACATTTT 58.393 39.130 0.00 0.00 0.00 1.82
3167 3640 3.550030 GCCGTTGTACTTTGAGCACATTT 60.550 43.478 0.00 0.00 0.00 2.32
3168 3641 2.031157 GCCGTTGTACTTTGAGCACATT 60.031 45.455 0.00 0.00 0.00 2.71
3169 3642 1.535462 GCCGTTGTACTTTGAGCACAT 59.465 47.619 0.00 0.00 0.00 3.21
3170 3643 0.941542 GCCGTTGTACTTTGAGCACA 59.058 50.000 0.00 0.00 0.00 4.57
3171 3644 0.237498 GGCCGTTGTACTTTGAGCAC 59.763 55.000 0.00 0.00 0.00 4.40
3172 3645 0.107831 AGGCCGTTGTACTTTGAGCA 59.892 50.000 0.00 0.00 0.00 4.26
3173 3646 2.088950 TAGGCCGTTGTACTTTGAGC 57.911 50.000 0.00 0.00 0.00 4.26
3174 3647 5.293569 CCTAAATAGGCCGTTGTACTTTGAG 59.706 44.000 0.00 0.00 36.53 3.02
3175 3648 5.180271 CCTAAATAGGCCGTTGTACTTTGA 58.820 41.667 0.00 0.00 36.53 2.69
3176 3649 5.479716 CCTAAATAGGCCGTTGTACTTTG 57.520 43.478 0.00 0.00 36.53 2.77
3337 3810 9.986833 GAACATTTTTGAAAACAAGCTAAACAT 57.013 25.926 0.00 0.00 0.00 2.71
3338 3811 8.993121 TGAACATTTTTGAAAACAAGCTAAACA 58.007 25.926 0.00 0.00 0.00 2.83
3339 3812 9.261318 GTGAACATTTTTGAAAACAAGCTAAAC 57.739 29.630 0.00 0.00 0.00 2.01
3340 3813 9.213799 AGTGAACATTTTTGAAAACAAGCTAAA 57.786 25.926 0.00 0.00 0.00 1.85
3341 3814 8.655092 CAGTGAACATTTTTGAAAACAAGCTAA 58.345 29.630 0.00 0.00 0.00 3.09
3342 3815 7.816995 ACAGTGAACATTTTTGAAAACAAGCTA 59.183 29.630 0.00 0.00 0.00 3.32
3343 3816 6.650390 ACAGTGAACATTTTTGAAAACAAGCT 59.350 30.769 0.00 0.00 0.00 3.74
3344 3817 6.830736 ACAGTGAACATTTTTGAAAACAAGC 58.169 32.000 0.00 0.00 0.00 4.01
3345 3818 9.739786 GTAACAGTGAACATTTTTGAAAACAAG 57.260 29.630 0.00 0.00 0.00 3.16
3346 3819 9.261180 TGTAACAGTGAACATTTTTGAAAACAA 57.739 25.926 0.00 0.00 0.00 2.83
3347 3820 8.818141 TGTAACAGTGAACATTTTTGAAAACA 57.182 26.923 0.00 0.00 0.00 2.83
3348 3821 9.523730 GTTGTAACAGTGAACATTTTTGAAAAC 57.476 29.630 0.00 0.00 0.00 2.43
3349 3822 9.261180 TGTTGTAACAGTGAACATTTTTGAAAA 57.739 25.926 0.00 0.00 34.30 2.29
3350 3823 8.818141 TGTTGTAACAGTGAACATTTTTGAAA 57.182 26.923 0.00 0.00 34.30 2.69
3351 3824 8.818141 TTGTTGTAACAGTGAACATTTTTGAA 57.182 26.923 0.00 0.00 40.50 2.69
3352 3825 8.994429 ATTGTTGTAACAGTGAACATTTTTGA 57.006 26.923 0.00 0.00 40.50 2.69
3357 3830 9.677567 GAACATATTGTTGTAACAGTGAACATT 57.322 29.630 0.00 0.00 41.28 2.71
3358 3831 8.845227 TGAACATATTGTTGTAACAGTGAACAT 58.155 29.630 0.00 0.00 41.28 2.71
3359 3832 8.214721 TGAACATATTGTTGTAACAGTGAACA 57.785 30.769 0.00 0.00 41.28 3.18
3360 3833 9.677567 AATGAACATATTGTTGTAACAGTGAAC 57.322 29.630 0.00 0.00 41.28 3.18
3361 3834 9.891828 GAATGAACATATTGTTGTAACAGTGAA 57.108 29.630 0.00 0.00 41.28 3.18
3362 3835 9.283768 AGAATGAACATATTGTTGTAACAGTGA 57.716 29.630 0.00 0.00 41.28 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.