Multiple sequence alignment - TraesCS3A01G418700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G418700 chr3A 100.000 9321 0 0 1 9321 660435466 660444786 0.000000e+00 17213.0
1 TraesCS3A01G418700 chr3A 88.192 1211 140 3 7343 8552 660510359 660511567 0.000000e+00 1441.0
2 TraesCS3A01G418700 chr3A 83.830 872 132 6 5953 6820 660509231 660510097 0.000000e+00 821.0
3 TraesCS3A01G418700 chr3A 77.741 1222 203 43 3273 4449 364525650 364524453 0.000000e+00 686.0
4 TraesCS3A01G418700 chr3A 78.508 1019 147 36 3423 4412 495262026 495263001 3.720000e-168 603.0
5 TraesCS3A01G418700 chr3A 82.805 663 85 17 4372 5017 336883557 336882907 4.890000e-157 566.0
6 TraesCS3A01G418700 chr3A 90.160 437 35 5 43 471 44729399 44729835 6.320000e-156 562.0
7 TraesCS3A01G418700 chr3A 90.160 437 35 5 43 471 44764957 44764521 6.320000e-156 562.0
8 TraesCS3A01G418700 chr3A 91.185 329 19 4 377 695 660433726 660433398 1.110000e-118 438.0
9 TraesCS3A01G418700 chr3A 81.529 314 49 5 5226 5537 660508845 660509151 5.590000e-62 250.0
10 TraesCS3A01G418700 chr3A 83.582 201 27 5 1917 2114 589177110 589177307 5.750000e-42 183.0
11 TraesCS3A01G418700 chr3A 81.081 222 25 11 486 694 358908143 358908360 2.690000e-35 161.0
12 TraesCS3A01G418700 chr3A 80.100 201 30 8 1917 2112 531460595 531460790 3.510000e-29 141.0
13 TraesCS3A01G418700 chr3A 79.082 196 34 6 1914 2108 10164173 10164362 2.730000e-25 128.0
14 TraesCS3A01G418700 chr3A 80.000 130 11 11 9011 9132 215205255 215205133 2.160000e-11 82.4
15 TraesCS3A01G418700 chr3B 94.103 3561 172 23 5781 9318 695510669 695514214 0.000000e+00 5378.0
16 TraesCS3A01G418700 chr3B 85.106 3525 349 78 2392 5789 695505258 695508733 0.000000e+00 3439.0
17 TraesCS3A01G418700 chr3B 88.235 1173 137 1 7380 8552 695556454 695557625 0.000000e+00 1400.0
18 TraesCS3A01G418700 chr3B 92.593 945 53 9 707 1638 695503798 695504738 0.000000e+00 1341.0
19 TraesCS3A01G418700 chr3B 82.454 872 134 11 5953 6820 695555140 695555996 0.000000e+00 745.0
20 TraesCS3A01G418700 chr3B 90.066 453 34 6 30 471 54996253 54996705 2.260000e-160 577.0
21 TraesCS3A01G418700 chr3B 91.605 405 26 5 64 460 55092109 55091705 3.800000e-153 553.0
22 TraesCS3A01G418700 chr3B 76.891 952 159 39 3273 4194 89479261 89478341 5.060000e-132 483.0
23 TraesCS3A01G418700 chr3B 77.729 687 119 26 4393 5056 89478157 89477482 3.160000e-104 390.0
24 TraesCS3A01G418700 chr3B 93.902 246 15 0 2148 2393 695504889 695505134 1.140000e-98 372.0
25 TraesCS3A01G418700 chr3B 83.285 347 49 8 4635 4976 327867640 327867298 2.530000e-80 311.0
26 TraesCS3A01G418700 chr3B 82.770 296 47 4 5244 5537 695554766 695555059 2.580000e-65 261.0
27 TraesCS3A01G418700 chr3B 81.921 177 21 11 8960 9132 254035766 254035597 1.260000e-28 139.0
28 TraesCS3A01G418700 chr3B 84.536 97 11 4 1439 1534 12143264 12143171 9.970000e-15 93.5
29 TraesCS3A01G418700 chr3D 94.423 2851 119 15 5781 8624 526205970 526208787 0.000000e+00 4348.0
30 TraesCS3A01G418700 chr3D 91.916 2610 153 21 695 3276 526191715 526194294 0.000000e+00 3598.0
31 TraesCS3A01G418700 chr3D 86.333 1339 155 19 7235 8552 526276461 526277792 0.000000e+00 1434.0
32 TraesCS3A01G418700 chr3D 93.127 742 44 7 5053 5789 526194291 526195030 0.000000e+00 1081.0
33 TraesCS3A01G418700 chr3D 83.643 862 131 8 5953 6810 526275462 526276317 0.000000e+00 802.0
34 TraesCS3A01G418700 chr3D 90.772 596 32 8 8739 9321 526208787 526209372 0.000000e+00 774.0
35 TraesCS3A01G418700 chr3D 90.417 480 35 3 3 471 32344361 32344840 1.030000e-173 621.0
36 TraesCS3A01G418700 chr3D 80.341 880 122 38 3273 4127 275893349 275894202 3.700000e-173 619.0
37 TraesCS3A01G418700 chr3D 91.333 450 31 5 30 471 32419576 32419127 8.000000e-170 608.0
38 TraesCS3A01G418700 chr3D 82.288 638 86 12 3701 4316 200387540 200386908 2.310000e-145 527.0
39 TraesCS3A01G418700 chr3D 84.000 250 40 0 5226 5475 526275080 526275329 3.360000e-59 241.0
40 TraesCS3A01G418700 chr3D 87.356 87 9 2 1449 1534 455100575 455100660 2.140000e-16 99.0
41 TraesCS3A01G418700 chr3D 94.915 59 2 1 3271 3328 274446830 274446888 3.580000e-14 91.6
42 TraesCS3A01G418700 chr3D 94.915 59 2 1 3271 3328 274673369 274673427 3.580000e-14 91.6
43 TraesCS3A01G418700 chr3D 94.737 38 0 2 2958 2994 87627689 87627653 3.640000e-04 58.4
44 TraesCS3A01G418700 chr4D 80.105 1714 236 54 3369 5039 421889827 421888176 0.000000e+00 1179.0
45 TraesCS3A01G418700 chr4D 79.603 956 119 47 3291 4216 421888169 421887260 4.780000e-172 616.0
46 TraesCS3A01G418700 chr4D 85.227 176 20 4 1936 2109 488808365 488808536 9.620000e-40 176.0
47 TraesCS3A01G418700 chr4D 74.120 483 78 31 3275 3721 101393541 101393070 1.250000e-33 156.0
48 TraesCS3A01G418700 chr4D 77.116 319 41 10 3368 3676 134694653 134694357 1.250000e-33 156.0
49 TraesCS3A01G418700 chr4D 100.000 32 0 0 9101 9132 375131929 375131898 1.010000e-04 60.2
50 TraesCS3A01G418700 chr6D 80.242 1650 234 49 3402 5026 396452274 396450692 0.000000e+00 1157.0
51 TraesCS3A01G418700 chr6D 97.872 47 0 1 9181 9226 37257532 37257578 7.760000e-11 80.5
52 TraesCS3A01G418700 chr7D 79.080 1826 252 69 3273 5041 37538823 37540575 0.000000e+00 1136.0
53 TraesCS3A01G418700 chr7D 77.175 1621 269 65 3404 4953 32701762 32700172 0.000000e+00 850.0
54 TraesCS3A01G418700 chr7D 74.319 954 170 41 3919 4825 91057645 91056720 1.500000e-87 335.0
55 TraesCS3A01G418700 chr7D 78.674 347 38 14 3270 3595 3657171 3657502 2.050000e-46 198.0
56 TraesCS3A01G418700 chr7D 81.863 204 22 10 503 694 406313855 406313655 3.480000e-34 158.0
57 TraesCS3A01G418700 chr7D 81.250 176 27 5 479 651 627412544 627412372 4.540000e-28 137.0
58 TraesCS3A01G418700 chr7D 85.417 96 12 2 1440 1534 152441466 152441560 2.140000e-16 99.0
59 TraesCS3A01G418700 chr2A 79.246 1725 252 64 3398 5053 17756665 17754978 0.000000e+00 1105.0
60 TraesCS3A01G418700 chr2A 78.060 629 109 20 4415 5032 467234819 467234209 4.110000e-98 370.0
61 TraesCS3A01G418700 chr2A 85.714 84 12 0 3273 3356 158258804 158258887 1.290000e-13 89.8
62 TraesCS3A01G418700 chr2A 93.750 48 2 1 9180 9226 258351549 258351596 4.670000e-08 71.3
63 TraesCS3A01G418700 chr2D 80.111 1438 222 38 3498 4882 158099092 158100518 0.000000e+00 1013.0
64 TraesCS3A01G418700 chr2D 74.611 1800 320 91 3273 5004 606917689 606915959 0.000000e+00 665.0
65 TraesCS3A01G418700 chr2D 80.367 545 55 23 3420 3926 496377322 496376792 5.320000e-97 366.0
66 TraesCS3A01G418700 chr2D 93.750 48 2 1 9180 9226 239981231 239981278 4.670000e-08 71.3
67 TraesCS3A01G418700 chr1D 78.102 1781 255 65 3275 4995 354520350 354522055 0.000000e+00 1003.0
68 TraesCS3A01G418700 chr1D 79.845 1032 146 28 3530 4520 63605680 63606690 0.000000e+00 697.0
69 TraesCS3A01G418700 chr1D 82.812 192 25 5 506 692 492808676 492808488 2.080000e-36 165.0
70 TraesCS3A01G418700 chr6B 77.950 1678 255 54 3275 4887 624835766 624834139 0.000000e+00 942.0
71 TraesCS3A01G418700 chr6B 77.976 1680 251 62 3275 4887 624870206 624868579 0.000000e+00 942.0
72 TraesCS3A01G418700 chr6B 77.822 1249 191 59 3612 4809 624806513 624805300 0.000000e+00 693.0
73 TraesCS3A01G418700 chr6B 88.889 63 1 5 9181 9239 86473104 86473164 1.300000e-08 73.1
74 TraesCS3A01G418700 chr6B 92.308 52 3 1 9176 9226 86691248 86691299 1.300000e-08 73.1
75 TraesCS3A01G418700 chr6B 97.674 43 0 1 9185 9226 86748971 86749013 1.300000e-08 73.1
76 TraesCS3A01G418700 chr6B 94.872 39 1 1 2957 2994 63614990 63614952 1.010000e-04 60.2
77 TraesCS3A01G418700 chr7B 76.382 1863 277 80 3275 5053 223716997 223718780 0.000000e+00 852.0
78 TraesCS3A01G418700 chr7B 80.714 420 72 8 4608 5022 242914669 242914254 1.510000e-82 318.0
79 TraesCS3A01G418700 chr7B 83.810 105 16 1 514 618 728814383 728814280 2.140000e-16 99.0
80 TraesCS3A01G418700 chr5B 79.245 1325 195 44 3549 4829 127545495 127544207 0.000000e+00 850.0
81 TraesCS3A01G418700 chr5B 77.898 742 117 30 4238 4952 507555832 507556553 1.450000e-112 418.0
82 TraesCS3A01G418700 chr5B 87.640 89 8 3 1447 1534 450577632 450577718 5.960000e-17 100.0
83 TraesCS3A01G418700 chr5D 77.689 1497 248 48 3594 5055 543770032 543768587 0.000000e+00 835.0
84 TraesCS3A01G418700 chr5D 79.121 273 21 20 3400 3663 554866034 554866279 1.250000e-33 156.0
85 TraesCS3A01G418700 chr5D 97.143 35 1 0 8570 8604 432293407 432293441 1.010000e-04 60.2
86 TraesCS3A01G418700 chr5D 87.273 55 2 3 9078 9132 547522326 547522277 3.640000e-04 58.4
87 TraesCS3A01G418700 chr5A 78.232 1369 197 50 3532 4825 666042784 666044126 0.000000e+00 784.0
88 TraesCS3A01G418700 chr5A 84.049 326 40 8 345 660 437245147 437245470 4.230000e-78 303.0
89 TraesCS3A01G418700 chr5A 77.137 468 37 29 3275 3706 407788722 407789155 3.410000e-49 207.0
90 TraesCS3A01G418700 chr5A 79.310 261 30 6 1872 2109 53144246 53143987 2.690000e-35 161.0
91 TraesCS3A01G418700 chr5A 80.982 163 25 5 1905 2064 534619811 534619970 3.530000e-24 124.0
92 TraesCS3A01G418700 chr5A 87.500 88 9 2 1448 1534 557345852 557345938 5.960000e-17 100.0
93 TraesCS3A01G418700 chr2B 76.891 952 145 49 4113 5017 183263640 183264563 3.940000e-128 470.0
94 TraesCS3A01G418700 chr4B 80.496 564 76 16 3275 3813 142038168 142038722 1.460000e-107 401.0
95 TraesCS3A01G418700 chr4B 82.822 326 44 8 345 660 472088577 472088900 1.980000e-71 281.0
96 TraesCS3A01G418700 chr4B 100.000 32 0 0 9101 9132 462223447 462223416 1.010000e-04 60.2
97 TraesCS3A01G418700 chr4A 81.276 486 75 15 4578 5055 677243358 677242881 6.830000e-101 379.0
98 TraesCS3A01G418700 chr4A 82.258 434 55 12 3400 3830 104700975 104700561 1.150000e-93 355.0
99 TraesCS3A01G418700 chr4A 77.513 587 102 17 4236 4803 3503110 3503685 9.030000e-85 326.0
100 TraesCS3A01G418700 chr4A 100.000 32 0 0 9101 9132 89435247 89435278 1.010000e-04 60.2
101 TraesCS3A01G418700 chrUn 81.704 399 64 8 4661 5055 239310804 239311197 3.250000e-84 324.0
102 TraesCS3A01G418700 chrUn 81.704 399 64 8 4661 5055 318150086 318149693 3.250000e-84 324.0
103 TraesCS3A01G418700 chrUn 82.812 192 25 5 506 692 304221108 304221296 2.080000e-36 165.0
104 TraesCS3A01G418700 chrUn 80.838 167 29 3 1937 2102 101230115 101229951 2.730000e-25 128.0
105 TraesCS3A01G418700 chrUn 91.489 47 4 0 9082 9128 230602085 230602039 2.170000e-06 65.8
106 TraesCS3A01G418700 chr1A 82.663 323 42 10 349 660 110058755 110058436 3.320000e-69 274.0
107 TraesCS3A01G418700 chr1A 81.951 205 25 3 1918 2111 20461115 20460912 7.490000e-36 163.0
108 TraesCS3A01G418700 chr1A 77.512 209 31 6 1918 2113 551503084 551502879 2.750000e-20 111.0
109 TraesCS3A01G418700 chr7A 84.865 185 18 9 3413 3592 674099394 674099573 2.670000e-40 178.0
110 TraesCS3A01G418700 chr7A 88.506 87 8 2 1449 1534 290920036 290919951 4.600000e-18 104.0
111 TraesCS3A01G418700 chr7A 90.566 53 5 0 9174 9226 541896967 541896915 4.670000e-08 71.3
112 TraesCS3A01G418700 chr1B 82.682 179 24 7 1936 2111 55460878 55461052 1.620000e-32 152.0
113 TraesCS3A01G418700 chr1B 87.500 88 9 2 1448 1534 562890135 562890049 5.960000e-17 100.0
114 TraesCS3A01G418700 chr1B 97.143 35 1 0 8570 8604 633729552 633729586 1.010000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G418700 chr3A 660435466 660444786 9320 False 17213.000000 17213 100.000000 1 9321 1 chr3A.!!$F7 9320
1 TraesCS3A01G418700 chr3A 660508845 660511567 2722 False 837.333333 1441 84.517000 5226 8552 3 chr3A.!!$F8 3326
2 TraesCS3A01G418700 chr3A 364524453 364525650 1197 True 686.000000 686 77.741000 3273 4449 1 chr3A.!!$R4 1176
3 TraesCS3A01G418700 chr3A 495262026 495263001 975 False 603.000000 603 78.508000 3423 4412 1 chr3A.!!$F4 989
4 TraesCS3A01G418700 chr3A 336882907 336883557 650 True 566.000000 566 82.805000 4372 5017 1 chr3A.!!$R3 645
5 TraesCS3A01G418700 chr3B 695503798 695514214 10416 False 2632.500000 5378 91.426000 707 9318 4 chr3B.!!$F2 8611
6 TraesCS3A01G418700 chr3B 695554766 695557625 2859 False 802.000000 1400 84.486333 5244 8552 3 chr3B.!!$F3 3308
7 TraesCS3A01G418700 chr3B 89477482 89479261 1779 True 436.500000 483 77.310000 3273 5056 2 chr3B.!!$R5 1783
8 TraesCS3A01G418700 chr3D 526205970 526209372 3402 False 2561.000000 4348 92.597500 5781 9321 2 chr3D.!!$F7 3540
9 TraesCS3A01G418700 chr3D 526191715 526195030 3315 False 2339.500000 3598 92.521500 695 5789 2 chr3D.!!$F6 5094
10 TraesCS3A01G418700 chr3D 526275080 526277792 2712 False 825.666667 1434 84.658667 5226 8552 3 chr3D.!!$F8 3326
11 TraesCS3A01G418700 chr3D 275893349 275894202 853 False 619.000000 619 80.341000 3273 4127 1 chr3D.!!$F4 854
12 TraesCS3A01G418700 chr3D 200386908 200387540 632 True 527.000000 527 82.288000 3701 4316 1 chr3D.!!$R3 615
13 TraesCS3A01G418700 chr4D 421887260 421889827 2567 True 897.500000 1179 79.854000 3291 5039 2 chr4D.!!$R4 1748
14 TraesCS3A01G418700 chr6D 396450692 396452274 1582 True 1157.000000 1157 80.242000 3402 5026 1 chr6D.!!$R1 1624
15 TraesCS3A01G418700 chr7D 37538823 37540575 1752 False 1136.000000 1136 79.080000 3273 5041 1 chr7D.!!$F2 1768
16 TraesCS3A01G418700 chr7D 32700172 32701762 1590 True 850.000000 850 77.175000 3404 4953 1 chr7D.!!$R1 1549
17 TraesCS3A01G418700 chr7D 91056720 91057645 925 True 335.000000 335 74.319000 3919 4825 1 chr7D.!!$R2 906
18 TraesCS3A01G418700 chr2A 17754978 17756665 1687 True 1105.000000 1105 79.246000 3398 5053 1 chr2A.!!$R1 1655
19 TraesCS3A01G418700 chr2A 467234209 467234819 610 True 370.000000 370 78.060000 4415 5032 1 chr2A.!!$R2 617
20 TraesCS3A01G418700 chr2D 158099092 158100518 1426 False 1013.000000 1013 80.111000 3498 4882 1 chr2D.!!$F1 1384
21 TraesCS3A01G418700 chr2D 606915959 606917689 1730 True 665.000000 665 74.611000 3273 5004 1 chr2D.!!$R2 1731
22 TraesCS3A01G418700 chr2D 496376792 496377322 530 True 366.000000 366 80.367000 3420 3926 1 chr2D.!!$R1 506
23 TraesCS3A01G418700 chr1D 354520350 354522055 1705 False 1003.000000 1003 78.102000 3275 4995 1 chr1D.!!$F2 1720
24 TraesCS3A01G418700 chr1D 63605680 63606690 1010 False 697.000000 697 79.845000 3530 4520 1 chr1D.!!$F1 990
25 TraesCS3A01G418700 chr6B 624834139 624835766 1627 True 942.000000 942 77.950000 3275 4887 1 chr6B.!!$R3 1612
26 TraesCS3A01G418700 chr6B 624868579 624870206 1627 True 942.000000 942 77.976000 3275 4887 1 chr6B.!!$R4 1612
27 TraesCS3A01G418700 chr6B 624805300 624806513 1213 True 693.000000 693 77.822000 3612 4809 1 chr6B.!!$R2 1197
28 TraesCS3A01G418700 chr7B 223716997 223718780 1783 False 852.000000 852 76.382000 3275 5053 1 chr7B.!!$F1 1778
29 TraesCS3A01G418700 chr5B 127544207 127545495 1288 True 850.000000 850 79.245000 3549 4829 1 chr5B.!!$R1 1280
30 TraesCS3A01G418700 chr5B 507555832 507556553 721 False 418.000000 418 77.898000 4238 4952 1 chr5B.!!$F2 714
31 TraesCS3A01G418700 chr5D 543768587 543770032 1445 True 835.000000 835 77.689000 3594 5055 1 chr5D.!!$R1 1461
32 TraesCS3A01G418700 chr5A 666042784 666044126 1342 False 784.000000 784 78.232000 3532 4825 1 chr5A.!!$F5 1293
33 TraesCS3A01G418700 chr2B 183263640 183264563 923 False 470.000000 470 76.891000 4113 5017 1 chr2B.!!$F1 904
34 TraesCS3A01G418700 chr4B 142038168 142038722 554 False 401.000000 401 80.496000 3275 3813 1 chr4B.!!$F1 538
35 TraesCS3A01G418700 chr4A 3503110 3503685 575 False 326.000000 326 77.513000 4236 4803 1 chr4A.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.032952 CTCGACCTCCGGAACAACAA 59.967 55.000 5.23 0.00 39.14 2.83 F
578 579 0.038892 GCTCCACATGGCTGTTGTTG 60.039 55.000 0.00 0.00 31.62 3.33 F
605 606 0.179156 CAGGACCAAATGCGCACATC 60.179 55.000 14.90 5.90 34.62 3.06 F
611 612 0.247814 CAAATGCGCACATCCGAGAC 60.248 55.000 14.90 0.00 34.62 3.36 F
612 613 0.673333 AAATGCGCACATCCGAGACA 60.673 50.000 14.90 0.00 34.62 3.41 F
613 614 0.673333 AATGCGCACATCCGAGACAA 60.673 50.000 14.90 0.00 34.62 3.18 F
2340 2357 0.673644 AGGCTAATGCGCGTTTCACT 60.674 50.000 21.69 12.75 40.82 3.41 F
3323 3491 0.026803 GCTTGAAATAGCGCCGTCTG 59.973 55.000 2.29 0.00 0.00 3.51 F
4236 4734 0.511221 CGCGAGGTTCAATGTCGTTT 59.489 50.000 0.00 0.00 36.09 3.60 F
4589 5192 0.033503 TGACGAGAGGGGCATCACTA 60.034 55.000 0.00 0.00 0.00 2.74 F
5571 6513 0.034863 GGACAATTGGCCTCCCGTTA 60.035 55.000 24.00 0.00 41.12 3.18 F
5676 6618 0.538118 GCATGTGTTTGGGCATCCAT 59.462 50.000 0.00 0.00 43.63 3.41 F
6646 9563 1.273838 ACCACCAGAGGGAAGCATCTA 60.274 52.381 0.00 0.00 38.05 1.98 F
8056 11164 2.170607 TGGAGCAGGCTATTTGAGTACC 59.829 50.000 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1637 1.206849 TGTGAGGATGAACGCATAGCA 59.793 47.619 0.00 0.0 34.11 3.49 R
2248 2265 0.771127 ACCAAAGCTAGCAAGACCCA 59.229 50.000 18.83 0.0 0.00 4.51 R
2317 2334 1.931172 GAAACGCGCATTAGCCTCTAA 59.069 47.619 5.73 0.0 37.52 2.10 R
2592 2735 2.769663 TCAAGTAGGTCACACAACCACT 59.230 45.455 0.00 0.0 42.12 4.00 R
2635 2778 5.868801 AGCATTGTTACAACATTTACATGGC 59.131 36.000 0.00 0.0 38.95 4.40 R
2638 2781 7.656412 TGTGAGCATTGTTACAACATTTACAT 58.344 30.769 0.00 0.0 38.95 2.29 R
3555 3818 0.185175 TCTACAGGCTCCTCGGCATA 59.815 55.000 0.00 0.0 41.46 3.14 R
4570 5168 0.033503 TAGTGATGCCCCTCTCGTCA 60.034 55.000 0.00 0.0 0.00 4.35 R
5558 6500 1.075698 TGGAAATTAACGGGAGGCCAA 59.924 47.619 5.01 0.0 0.00 4.52 R
5676 6618 1.742308 AGGAAGCTAGGGGTGTTTGA 58.258 50.000 0.00 0.0 0.00 2.69 R
6646 9563 2.086610 AACTTGGGCAATTCCAGTGT 57.913 45.000 0.00 0.0 38.17 3.55 R
6995 9912 2.158050 ACCCCTAGTTGTACAGGTCCTT 60.158 50.000 0.00 0.0 0.00 3.36 R
8097 11205 2.503061 CGATCCAGCCTCTGTGGG 59.497 66.667 0.00 0.0 35.58 4.61 R
9016 12127 3.953612 GTGATGGGCCTTTGATAATGTGA 59.046 43.478 4.53 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.424566 GTCGGCCACGCTCGGTAA 62.425 66.667 2.24 0.00 40.69 2.85
25 26 4.424566 TCGGCCACGCTCGGTAAC 62.425 66.667 2.24 0.00 40.69 2.50
29 30 4.462280 CCACGCTCGGTAACCCCC 62.462 72.222 0.00 0.00 0.00 5.40
54 55 4.827087 CGACGAGCTGCTGGCCAT 62.827 66.667 5.51 0.00 43.05 4.40
55 56 3.200593 GACGAGCTGCTGGCCATG 61.201 66.667 5.51 1.08 43.05 3.66
56 57 4.790962 ACGAGCTGCTGGCCATGG 62.791 66.667 5.51 7.63 43.05 3.66
57 58 4.478371 CGAGCTGCTGGCCATGGA 62.478 66.667 18.40 0.31 43.05 3.41
58 59 2.827642 GAGCTGCTGGCCATGGAC 60.828 66.667 18.40 15.32 43.05 4.02
59 60 3.633609 GAGCTGCTGGCCATGGACA 62.634 63.158 22.03 22.03 43.05 4.02
60 61 2.441532 GCTGCTGGCCATGGACAT 60.442 61.111 23.87 0.00 29.87 3.06
61 62 2.782222 GCTGCTGGCCATGGACATG 61.782 63.158 23.87 16.44 38.51 3.21
62 63 1.077285 CTGCTGGCCATGGACATGA 60.077 57.895 23.87 9.83 41.20 3.07
63 64 1.077285 TGCTGGCCATGGACATGAG 60.077 57.895 23.87 11.34 41.20 2.90
64 65 2.487532 GCTGGCCATGGACATGAGC 61.488 63.158 23.87 18.31 41.20 4.26
65 66 1.077285 CTGGCCATGGACATGAGCA 60.077 57.895 23.87 0.00 41.20 4.26
66 67 0.681887 CTGGCCATGGACATGAGCAA 60.682 55.000 23.87 0.00 41.20 3.91
67 68 0.681887 TGGCCATGGACATGAGCAAG 60.682 55.000 19.12 0.00 41.20 4.01
68 69 0.394762 GGCCATGGACATGAGCAAGA 60.395 55.000 18.40 0.00 41.20 3.02
69 70 1.466856 GCCATGGACATGAGCAAGAA 58.533 50.000 18.40 0.00 41.20 2.52
70 71 1.133790 GCCATGGACATGAGCAAGAAC 59.866 52.381 18.40 0.00 41.20 3.01
71 72 2.719739 CCATGGACATGAGCAAGAACT 58.280 47.619 5.56 0.00 41.20 3.01
72 73 2.681848 CCATGGACATGAGCAAGAACTC 59.318 50.000 5.56 0.00 41.20 3.01
73 74 3.607741 CATGGACATGAGCAAGAACTCT 58.392 45.455 6.44 0.00 41.20 3.24
74 75 3.325293 TGGACATGAGCAAGAACTCTC 57.675 47.619 0.00 0.00 37.58 3.20
75 76 2.902486 TGGACATGAGCAAGAACTCTCT 59.098 45.455 0.00 0.00 37.58 3.10
76 77 4.089361 TGGACATGAGCAAGAACTCTCTA 58.911 43.478 0.00 0.00 37.58 2.43
77 78 4.528206 TGGACATGAGCAAGAACTCTCTAA 59.472 41.667 0.00 0.00 37.58 2.10
78 79 4.867608 GGACATGAGCAAGAACTCTCTAAC 59.132 45.833 0.00 0.00 37.58 2.34
79 80 4.826556 ACATGAGCAAGAACTCTCTAACC 58.173 43.478 0.00 0.00 37.58 2.85
80 81 3.577649 TGAGCAAGAACTCTCTAACCG 57.422 47.619 0.00 0.00 37.58 4.44
81 82 2.231478 TGAGCAAGAACTCTCTAACCGG 59.769 50.000 0.00 0.00 37.58 5.28
82 83 1.550976 AGCAAGAACTCTCTAACCGGG 59.449 52.381 6.32 0.00 0.00 5.73
83 84 1.275573 GCAAGAACTCTCTAACCGGGT 59.724 52.381 6.32 0.00 0.00 5.28
84 85 2.674462 GCAAGAACTCTCTAACCGGGTC 60.674 54.545 6.32 0.00 0.00 4.46
85 86 2.826725 CAAGAACTCTCTAACCGGGTCT 59.173 50.000 6.32 0.00 0.00 3.85
86 87 2.725637 AGAACTCTCTAACCGGGTCTC 58.274 52.381 6.32 0.00 0.00 3.36
87 88 2.309458 AGAACTCTCTAACCGGGTCTCT 59.691 50.000 6.32 0.00 0.00 3.10
88 89 2.131776 ACTCTCTAACCGGGTCTCTG 57.868 55.000 6.32 0.00 0.00 3.35
89 90 0.741915 CTCTCTAACCGGGTCTCTGC 59.258 60.000 6.32 0.00 0.00 4.26
90 91 0.683504 TCTCTAACCGGGTCTCTGCC 60.684 60.000 6.32 0.00 0.00 4.85
91 92 0.684805 CTCTAACCGGGTCTCTGCCT 60.685 60.000 6.32 0.00 0.00 4.75
92 93 0.683504 TCTAACCGGGTCTCTGCCTC 60.684 60.000 6.32 0.00 0.00 4.70
93 94 1.677637 CTAACCGGGTCTCTGCCTCC 61.678 65.000 6.32 0.00 0.00 4.30
96 97 3.827898 CGGGTCTCTGCCTCCGTC 61.828 72.222 0.00 0.00 37.92 4.79
97 98 3.827898 GGGTCTCTGCCTCCGTCG 61.828 72.222 0.00 0.00 0.00 5.12
98 99 4.500116 GGTCTCTGCCTCCGTCGC 62.500 72.222 0.00 0.00 0.00 5.19
99 100 3.444805 GTCTCTGCCTCCGTCGCT 61.445 66.667 0.00 0.00 0.00 4.93
100 101 2.113433 GTCTCTGCCTCCGTCGCTA 61.113 63.158 0.00 0.00 0.00 4.26
101 102 1.820056 TCTCTGCCTCCGTCGCTAG 60.820 63.158 0.00 0.00 0.00 3.42
102 103 2.829003 TCTGCCTCCGTCGCTAGG 60.829 66.667 7.35 7.35 35.86 3.02
103 104 3.141488 CTGCCTCCGTCGCTAGGT 61.141 66.667 12.01 0.00 35.16 3.08
104 105 3.417275 CTGCCTCCGTCGCTAGGTG 62.417 68.421 12.01 4.15 35.16 4.00
105 106 4.208686 GCCTCCGTCGCTAGGTGG 62.209 72.222 12.01 7.18 43.35 4.61
106 107 3.528370 CCTCCGTCGCTAGGTGGG 61.528 72.222 4.19 0.00 38.42 4.61
107 108 4.208686 CTCCGTCGCTAGGTGGGC 62.209 72.222 0.00 0.00 0.00 5.36
108 109 4.753662 TCCGTCGCTAGGTGGGCT 62.754 66.667 0.00 0.00 0.00 5.19
109 110 4.208686 CCGTCGCTAGGTGGGCTC 62.209 72.222 0.00 0.00 0.00 4.70
110 111 3.449227 CGTCGCTAGGTGGGCTCA 61.449 66.667 0.00 0.00 0.00 4.26
111 112 2.978824 GTCGCTAGGTGGGCTCAA 59.021 61.111 0.00 0.00 0.00 3.02
112 113 1.153549 GTCGCTAGGTGGGCTCAAG 60.154 63.158 0.00 0.00 0.00 3.02
113 114 2.187946 CGCTAGGTGGGCTCAAGG 59.812 66.667 0.00 0.00 0.00 3.61
114 115 2.592308 GCTAGGTGGGCTCAAGGG 59.408 66.667 0.00 0.00 0.00 3.95
115 116 3.049080 GCTAGGTGGGCTCAAGGGG 62.049 68.421 0.00 0.00 0.00 4.79
116 117 3.015145 TAGGTGGGCTCAAGGGGC 61.015 66.667 0.00 0.00 0.00 5.80
117 118 3.579451 TAGGTGGGCTCAAGGGGCT 62.579 63.158 0.00 0.00 0.00 5.19
118 119 4.748144 GGTGGGCTCAAGGGGCTG 62.748 72.222 0.00 0.00 0.00 4.85
121 122 4.372999 GGGCTCAAGGGGCTGCTT 62.373 66.667 0.00 0.00 0.00 3.91
122 123 2.677228 GGCTCAAGGGGCTGCTTA 59.323 61.111 0.00 0.00 0.00 3.09
123 124 1.000896 GGCTCAAGGGGCTGCTTAA 60.001 57.895 0.00 0.00 0.00 1.85
124 125 1.034292 GGCTCAAGGGGCTGCTTAAG 61.034 60.000 0.00 0.00 0.00 1.85
125 126 0.035056 GCTCAAGGGGCTGCTTAAGA 60.035 55.000 6.67 0.00 0.00 2.10
126 127 1.409381 GCTCAAGGGGCTGCTTAAGAT 60.409 52.381 6.67 0.00 0.00 2.40
127 128 2.295885 CTCAAGGGGCTGCTTAAGATG 58.704 52.381 6.67 0.00 0.00 2.90
128 129 1.064463 TCAAGGGGCTGCTTAAGATGG 60.064 52.381 6.67 0.00 0.00 3.51
129 130 1.064463 CAAGGGGCTGCTTAAGATGGA 60.064 52.381 6.67 0.00 0.00 3.41
130 131 0.548510 AGGGGCTGCTTAAGATGGAC 59.451 55.000 6.67 0.00 0.00 4.02
131 132 0.466372 GGGGCTGCTTAAGATGGACC 60.466 60.000 6.67 6.39 0.00 4.46
132 133 0.548510 GGGCTGCTTAAGATGGACCT 59.451 55.000 6.67 0.00 0.00 3.85
133 134 1.475930 GGGCTGCTTAAGATGGACCTC 60.476 57.143 6.67 0.00 0.00 3.85
134 135 1.576356 GCTGCTTAAGATGGACCTCG 58.424 55.000 6.67 0.00 0.00 4.63
135 136 1.808133 GCTGCTTAAGATGGACCTCGG 60.808 57.143 6.67 0.00 0.00 4.63
136 137 0.178068 TGCTTAAGATGGACCTCGGC 59.822 55.000 6.67 0.00 0.00 5.54
137 138 0.178068 GCTTAAGATGGACCTCGGCA 59.822 55.000 6.67 0.00 0.00 5.69
138 139 1.406887 GCTTAAGATGGACCTCGGCAA 60.407 52.381 6.67 0.00 0.00 4.52
139 140 2.746472 GCTTAAGATGGACCTCGGCAAT 60.746 50.000 6.67 0.00 0.00 3.56
140 141 3.494398 GCTTAAGATGGACCTCGGCAATA 60.494 47.826 6.67 0.00 0.00 1.90
141 142 4.703897 CTTAAGATGGACCTCGGCAATAA 58.296 43.478 0.00 0.00 0.00 1.40
142 143 2.622064 AGATGGACCTCGGCAATAAC 57.378 50.000 0.00 0.00 0.00 1.89
143 144 1.141053 AGATGGACCTCGGCAATAACC 59.859 52.381 0.00 0.00 0.00 2.85
151 152 3.406559 GGCAATAACCGCCTCGAC 58.593 61.111 0.00 0.00 46.56 4.20
152 153 2.522638 GGCAATAACCGCCTCGACG 61.523 63.158 0.00 0.00 46.56 5.12
194 195 3.386237 GCCTGGAGAGCCTCACGT 61.386 66.667 0.00 0.00 34.31 4.49
195 196 2.948720 GCCTGGAGAGCCTCACGTT 61.949 63.158 0.00 0.00 34.31 3.99
196 197 1.079543 CCTGGAGAGCCTCACGTTG 60.080 63.158 0.00 0.00 34.31 4.10
197 198 1.739562 CTGGAGAGCCTCACGTTGC 60.740 63.158 0.00 0.00 34.31 4.17
198 199 2.164865 CTGGAGAGCCTCACGTTGCT 62.165 60.000 3.81 3.81 41.42 3.91
201 202 2.258591 GAGCCTCACGTTGCTCGA 59.741 61.111 13.74 0.00 43.94 4.04
202 203 2.049063 AGCCTCACGTTGCTCGAC 60.049 61.111 8.63 0.00 42.86 4.20
203 204 3.112709 GCCTCACGTTGCTCGACC 61.113 66.667 8.63 0.00 42.86 4.79
204 205 2.651361 CCTCACGTTGCTCGACCT 59.349 61.111 8.63 0.00 42.86 3.85
205 206 1.444553 CCTCACGTTGCTCGACCTC 60.445 63.158 8.63 0.00 42.86 3.85
206 207 1.444553 CTCACGTTGCTCGACCTCC 60.445 63.158 8.63 0.00 42.86 4.30
207 208 2.805353 CACGTTGCTCGACCTCCG 60.805 66.667 8.63 0.00 42.86 4.63
208 209 4.052229 ACGTTGCTCGACCTCCGG 62.052 66.667 0.00 0.00 42.86 5.14
209 210 3.744719 CGTTGCTCGACCTCCGGA 61.745 66.667 2.93 2.93 42.86 5.14
210 211 2.654877 GTTGCTCGACCTCCGGAA 59.345 61.111 5.23 0.00 39.14 4.30
211 212 1.737008 GTTGCTCGACCTCCGGAAC 60.737 63.158 5.23 0.00 39.14 3.62
212 213 2.204461 TTGCTCGACCTCCGGAACA 61.204 57.895 5.23 0.00 39.14 3.18
213 214 1.750341 TTGCTCGACCTCCGGAACAA 61.750 55.000 5.23 0.00 39.14 2.83
214 215 1.737008 GCTCGACCTCCGGAACAAC 60.737 63.158 5.23 0.00 39.14 3.32
215 216 1.663739 CTCGACCTCCGGAACAACA 59.336 57.895 5.23 0.00 39.14 3.33
216 217 0.032952 CTCGACCTCCGGAACAACAA 59.967 55.000 5.23 0.00 39.14 2.83
217 218 0.249573 TCGACCTCCGGAACAACAAC 60.250 55.000 5.23 0.00 39.14 3.32
218 219 1.226030 CGACCTCCGGAACAACAACC 61.226 60.000 5.23 0.00 33.91 3.77
219 220 0.108019 GACCTCCGGAACAACAACCT 59.892 55.000 5.23 0.00 0.00 3.50
220 221 0.108019 ACCTCCGGAACAACAACCTC 59.892 55.000 5.23 0.00 0.00 3.85
221 222 0.107831 CCTCCGGAACAACAACCTCA 59.892 55.000 5.23 0.00 0.00 3.86
222 223 1.226746 CTCCGGAACAACAACCTCAC 58.773 55.000 5.23 0.00 0.00 3.51
223 224 0.179040 TCCGGAACAACAACCTCACC 60.179 55.000 0.00 0.00 0.00 4.02
224 225 1.503818 CCGGAACAACAACCTCACCG 61.504 60.000 0.00 0.00 38.83 4.94
225 226 1.503818 CGGAACAACAACCTCACCGG 61.504 60.000 0.00 0.00 36.08 5.28
226 227 1.652563 GAACAACAACCTCACCGGC 59.347 57.895 0.00 0.00 35.61 6.13
227 228 2.113131 GAACAACAACCTCACCGGCG 62.113 60.000 0.00 0.00 35.61 6.46
228 229 3.353836 CAACAACCTCACCGGCGG 61.354 66.667 27.06 27.06 35.61 6.13
229 230 4.636435 AACAACCTCACCGGCGGG 62.636 66.667 31.78 19.08 40.11 6.13
247 248 3.114616 CTGCCGGAGTTCGTGCTG 61.115 66.667 5.05 2.24 36.49 4.41
248 249 4.680237 TGCCGGAGTTCGTGCTGG 62.680 66.667 5.05 0.00 36.49 4.85
251 252 4.680237 CGGAGTTCGTGCTGGGCA 62.680 66.667 0.00 0.00 35.60 5.36
252 253 2.045926 GGAGTTCGTGCTGGGCAT 60.046 61.111 0.00 0.00 41.91 4.40
253 254 2.401766 GGAGTTCGTGCTGGGCATG 61.402 63.158 5.48 5.48 45.79 4.06
254 255 2.360350 AGTTCGTGCTGGGCATGG 60.360 61.111 11.12 0.56 44.68 3.66
255 256 4.120331 GTTCGTGCTGGGCATGGC 62.120 66.667 11.56 11.56 44.68 4.40
280 281 2.183811 CAGGACCTGCTGCTCTCG 59.816 66.667 8.99 0.00 0.00 4.04
281 282 2.036414 AGGACCTGCTGCTCTCGA 59.964 61.111 0.00 0.00 0.00 4.04
282 283 2.051518 AGGACCTGCTGCTCTCGAG 61.052 63.158 5.93 5.93 0.00 4.04
304 305 4.785453 CCGCTGCTGGGAGGAACC 62.785 72.222 9.32 0.00 38.08 3.62
313 314 2.190578 GGAGGAACCCTGATGCGG 59.809 66.667 0.00 0.00 31.76 5.69
314 315 2.514824 GAGGAACCCTGATGCGGC 60.515 66.667 0.00 0.00 31.76 6.53
315 316 3.329542 GAGGAACCCTGATGCGGCA 62.330 63.158 4.58 4.58 31.76 5.69
316 317 3.134127 GGAACCCTGATGCGGCAC 61.134 66.667 4.03 0.00 0.00 5.01
329 330 2.184322 GGCACGAGAAGATGGCGA 59.816 61.111 0.00 0.00 0.00 5.54
330 331 1.880340 GGCACGAGAAGATGGCGAG 60.880 63.158 0.00 0.00 0.00 5.03
331 332 2.520904 GCACGAGAAGATGGCGAGC 61.521 63.158 0.00 0.00 34.85 5.03
332 333 1.880340 CACGAGAAGATGGCGAGCC 60.880 63.158 7.26 7.26 0.00 4.70
333 334 2.055042 ACGAGAAGATGGCGAGCCT 61.055 57.895 15.75 0.69 36.94 4.58
334 335 1.591059 CGAGAAGATGGCGAGCCTG 60.591 63.158 15.75 0.00 36.94 4.85
335 336 1.227497 GAGAAGATGGCGAGCCTGG 60.227 63.158 15.75 0.00 36.94 4.45
336 337 2.899339 GAAGATGGCGAGCCTGGC 60.899 66.667 11.65 11.65 36.94 4.85
351 352 4.643387 GGCCACGCTGGACCTGTT 62.643 66.667 0.00 0.00 40.64 3.16
352 353 3.050275 GCCACGCTGGACCTGTTC 61.050 66.667 8.04 0.00 40.96 3.18
353 354 2.425592 CCACGCTGGACCTGTTCA 59.574 61.111 0.00 0.00 40.96 3.18
354 355 1.227823 CCACGCTGGACCTGTTCAA 60.228 57.895 0.00 0.00 40.96 2.69
355 356 1.507141 CCACGCTGGACCTGTTCAAC 61.507 60.000 0.00 0.00 40.96 3.18
356 357 1.594293 ACGCTGGACCTGTTCAACG 60.594 57.895 0.04 0.04 0.00 4.10
357 358 1.594293 CGCTGGACCTGTTCAACGT 60.594 57.895 0.00 0.00 0.00 3.99
358 359 1.557443 CGCTGGACCTGTTCAACGTC 61.557 60.000 0.00 0.00 0.00 4.34
359 360 1.228657 GCTGGACCTGTTCAACGTCC 61.229 60.000 7.49 7.49 45.30 4.79
360 361 0.602905 CTGGACCTGTTCAACGTCCC 60.603 60.000 11.01 0.00 44.61 4.46
361 362 1.052124 TGGACCTGTTCAACGTCCCT 61.052 55.000 11.01 0.00 44.61 4.20
362 363 0.320508 GGACCTGTTCAACGTCCCTC 60.321 60.000 3.75 0.00 40.23 4.30
363 364 0.666577 GACCTGTTCAACGTCCCTCG 60.667 60.000 0.00 0.00 46.00 4.63
364 365 2.027625 CCTGTTCAACGTCCCTCGC 61.028 63.158 0.00 0.00 44.19 5.03
365 366 1.300620 CTGTTCAACGTCCCTCGCA 60.301 57.895 0.00 0.00 44.19 5.10
366 367 1.284982 CTGTTCAACGTCCCTCGCAG 61.285 60.000 0.00 0.00 44.19 5.18
367 368 2.027625 GTTCAACGTCCCTCGCAGG 61.028 63.158 0.00 0.00 44.19 4.85
368 369 3.876589 TTCAACGTCCCTCGCAGGC 62.877 63.158 0.00 0.00 44.19 4.85
369 370 4.680237 CAACGTCCCTCGCAGGCA 62.680 66.667 0.00 0.00 44.19 4.75
370 371 4.681978 AACGTCCCTCGCAGGCAC 62.682 66.667 0.00 0.00 44.19 5.01
373 374 4.101448 GTCCCTCGCAGGCACCAT 62.101 66.667 0.00 0.00 32.73 3.55
374 375 3.785859 TCCCTCGCAGGCACCATC 61.786 66.667 0.00 0.00 32.73 3.51
375 376 4.864334 CCCTCGCAGGCACCATCC 62.864 72.222 0.00 0.00 32.73 3.51
376 377 4.864334 CCTCGCAGGCACCATCCC 62.864 72.222 0.00 0.00 0.00 3.85
380 381 4.864334 GCAGGCACCATCCCGGAG 62.864 72.222 0.73 0.00 38.63 4.63
381 382 3.402681 CAGGCACCATCCCGGAGT 61.403 66.667 0.73 0.00 38.63 3.85
382 383 3.083997 AGGCACCATCCCGGAGTC 61.084 66.667 0.73 0.00 38.63 3.36
383 384 4.176752 GGCACCATCCCGGAGTCC 62.177 72.222 0.73 0.00 38.63 3.85
384 385 3.399181 GCACCATCCCGGAGTCCA 61.399 66.667 10.49 0.00 38.63 4.02
385 386 2.746375 GCACCATCCCGGAGTCCAT 61.746 63.158 10.49 0.00 38.63 3.41
386 387 1.146930 CACCATCCCGGAGTCCATG 59.853 63.158 10.49 5.50 38.63 3.66
387 388 2.072487 ACCATCCCGGAGTCCATGG 61.072 63.158 20.51 20.51 41.52 3.66
388 389 2.072487 CCATCCCGGAGTCCATGGT 61.072 63.158 12.58 0.00 36.56 3.55
389 390 1.146930 CATCCCGGAGTCCATGGTG 59.853 63.158 12.58 1.65 0.00 4.17
390 391 2.072487 ATCCCGGAGTCCATGGTGG 61.072 63.158 12.58 7.15 39.43 4.61
391 392 4.489771 CCCGGAGTCCATGGTGGC 62.490 72.222 12.58 3.63 37.47 5.01
392 393 4.838152 CCGGAGTCCATGGTGGCG 62.838 72.222 12.58 0.00 37.47 5.69
393 394 3.770040 CGGAGTCCATGGTGGCGA 61.770 66.667 12.58 0.00 37.47 5.54
394 395 2.911143 GGAGTCCATGGTGGCGAT 59.089 61.111 12.58 0.00 37.47 4.58
395 396 1.524621 GGAGTCCATGGTGGCGATG 60.525 63.158 12.58 0.00 37.47 3.84
396 397 2.124570 AGTCCATGGTGGCGATGC 60.125 61.111 12.58 0.00 37.47 3.91
409 410 2.676471 GATGCCCAGGTTGCGGTT 60.676 61.111 0.00 0.00 0.00 4.44
410 411 2.676471 ATGCCCAGGTTGCGGTTC 60.676 61.111 0.00 0.00 0.00 3.62
411 412 4.966787 TGCCCAGGTTGCGGTTCC 62.967 66.667 0.00 0.00 0.00 3.62
412 413 4.660938 GCCCAGGTTGCGGTTCCT 62.661 66.667 0.00 0.00 33.96 3.36
413 414 2.359975 CCCAGGTTGCGGTTCCTC 60.360 66.667 0.00 0.00 30.91 3.71
414 415 2.750350 CCAGGTTGCGGTTCCTCT 59.250 61.111 0.00 0.00 30.91 3.69
415 416 1.073199 CCAGGTTGCGGTTCCTCTT 59.927 57.895 0.00 0.00 30.91 2.85
416 417 1.237285 CCAGGTTGCGGTTCCTCTTG 61.237 60.000 0.00 0.00 30.91 3.02
417 418 1.600916 AGGTTGCGGTTCCTCTTGC 60.601 57.895 0.00 0.00 0.00 4.01
418 419 1.600916 GGTTGCGGTTCCTCTTGCT 60.601 57.895 0.00 0.00 0.00 3.91
419 420 0.321298 GGTTGCGGTTCCTCTTGCTA 60.321 55.000 0.00 0.00 0.00 3.49
420 421 1.079503 GTTGCGGTTCCTCTTGCTAG 58.920 55.000 0.00 0.00 0.00 3.42
421 422 0.973632 TTGCGGTTCCTCTTGCTAGA 59.026 50.000 0.00 0.00 0.00 2.43
422 423 0.246635 TGCGGTTCCTCTTGCTAGAC 59.753 55.000 0.00 0.00 0.00 2.59
423 424 0.460459 GCGGTTCCTCTTGCTAGACC 60.460 60.000 0.00 0.00 0.00 3.85
424 425 0.895530 CGGTTCCTCTTGCTAGACCA 59.104 55.000 0.00 0.00 0.00 4.02
425 426 1.404315 CGGTTCCTCTTGCTAGACCAC 60.404 57.143 0.00 0.00 0.00 4.16
426 427 1.623811 GGTTCCTCTTGCTAGACCACA 59.376 52.381 0.00 0.00 0.00 4.17
427 428 2.038557 GGTTCCTCTTGCTAGACCACAA 59.961 50.000 0.00 0.00 0.00 3.33
428 429 3.067833 GTTCCTCTTGCTAGACCACAAC 58.932 50.000 0.00 0.00 0.00 3.32
429 430 1.623811 TCCTCTTGCTAGACCACAACC 59.376 52.381 0.00 0.00 0.00 3.77
430 431 1.673033 CCTCTTGCTAGACCACAACCG 60.673 57.143 0.00 0.00 0.00 4.44
431 432 0.320421 TCTTGCTAGACCACAACCGC 60.320 55.000 0.00 0.00 0.00 5.68
432 433 1.298859 CTTGCTAGACCACAACCGCC 61.299 60.000 0.00 0.00 0.00 6.13
433 434 1.764571 TTGCTAGACCACAACCGCCT 61.765 55.000 0.00 0.00 0.00 5.52
434 435 1.448013 GCTAGACCACAACCGCCTC 60.448 63.158 0.00 0.00 0.00 4.70
435 436 1.889530 GCTAGACCACAACCGCCTCT 61.890 60.000 0.00 0.00 0.00 3.69
436 437 0.173708 CTAGACCACAACCGCCTCTC 59.826 60.000 0.00 0.00 0.00 3.20
437 438 1.255667 TAGACCACAACCGCCTCTCC 61.256 60.000 0.00 0.00 0.00 3.71
438 439 3.934391 GACCACAACCGCCTCTCCG 62.934 68.421 0.00 0.00 0.00 4.63
461 462 4.752879 GTGCCGGCCAAGCTCGTA 62.753 66.667 26.77 0.00 0.00 3.43
462 463 4.451150 TGCCGGCCAAGCTCGTAG 62.451 66.667 26.77 0.00 0.00 3.51
477 478 4.444838 TAGCGTTGCCGGCGACAT 62.445 61.111 38.96 30.07 35.00 3.06
480 481 3.853330 CGTTGCCGGCGACATGAG 61.853 66.667 38.96 23.13 0.00 2.90
481 482 3.499737 GTTGCCGGCGACATGAGG 61.500 66.667 36.88 0.00 0.00 3.86
488 489 4.451150 GCGACATGAGGCGTCCCA 62.451 66.667 0.00 0.00 0.00 4.37
489 490 2.509336 CGACATGAGGCGTCCCAC 60.509 66.667 0.00 0.00 0.00 4.61
490 491 2.509336 GACATGAGGCGTCCCACG 60.509 66.667 0.00 0.00 45.88 4.94
491 492 4.082523 ACATGAGGCGTCCCACGG 62.083 66.667 0.00 0.00 42.82 4.94
492 493 4.838152 CATGAGGCGTCCCACGGG 62.838 72.222 3.56 0.00 42.82 5.28
495 496 3.384532 GAGGCGTCCCACGGGTTA 61.385 66.667 1.07 0.00 42.82 2.85
496 497 2.924101 AGGCGTCCCACGGGTTAA 60.924 61.111 1.07 0.00 42.82 2.01
497 498 2.248086 GAGGCGTCCCACGGGTTAAT 62.248 60.000 1.07 0.00 42.82 1.40
498 499 1.377594 GGCGTCCCACGGGTTAATT 60.378 57.895 1.07 0.00 42.82 1.40
499 500 1.371337 GGCGTCCCACGGGTTAATTC 61.371 60.000 1.07 0.00 42.82 2.17
500 501 0.674269 GCGTCCCACGGGTTAATTCA 60.674 55.000 1.07 0.00 42.82 2.57
501 502 2.015081 GCGTCCCACGGGTTAATTCAT 61.015 52.381 1.07 0.00 42.82 2.57
502 503 2.742530 GCGTCCCACGGGTTAATTCATA 60.743 50.000 1.07 0.00 42.82 2.15
503 504 3.735591 CGTCCCACGGGTTAATTCATAT 58.264 45.455 1.07 0.00 38.08 1.78
504 505 4.800249 GCGTCCCACGGGTTAATTCATATA 60.800 45.833 1.07 0.00 42.82 0.86
505 506 5.299148 CGTCCCACGGGTTAATTCATATAA 58.701 41.667 1.07 0.00 38.08 0.98
506 507 5.759273 CGTCCCACGGGTTAATTCATATAAA 59.241 40.000 1.07 0.00 38.08 1.40
507 508 6.293027 CGTCCCACGGGTTAATTCATATAAAC 60.293 42.308 1.07 0.00 38.08 2.01
508 509 6.543100 GTCCCACGGGTTAATTCATATAAACA 59.457 38.462 1.07 0.00 36.47 2.83
509 510 6.768861 TCCCACGGGTTAATTCATATAAACAG 59.231 38.462 1.07 0.00 36.47 3.16
510 511 6.435428 CCACGGGTTAATTCATATAAACAGC 58.565 40.000 0.00 0.00 0.00 4.40
511 512 6.038825 CCACGGGTTAATTCATATAAACAGCA 59.961 38.462 0.00 0.00 0.00 4.41
512 513 7.415765 CCACGGGTTAATTCATATAAACAGCAA 60.416 37.037 0.00 0.00 0.00 3.91
513 514 7.643764 CACGGGTTAATTCATATAAACAGCAAG 59.356 37.037 0.00 0.00 0.00 4.01
514 515 7.138736 CGGGTTAATTCATATAAACAGCAAGG 58.861 38.462 0.00 0.00 0.00 3.61
515 516 7.433680 GGGTTAATTCATATAAACAGCAAGGG 58.566 38.462 0.00 0.00 0.00 3.95
516 517 7.433680 GGTTAATTCATATAAACAGCAAGGGG 58.566 38.462 0.00 0.00 0.00 4.79
517 518 5.535753 AATTCATATAAACAGCAAGGGGC 57.464 39.130 0.00 0.00 45.30 5.80
526 527 3.918544 GCAAGGGGCTAAATGCGA 58.081 55.556 0.00 0.00 44.05 5.10
527 528 2.188912 GCAAGGGGCTAAATGCGAA 58.811 52.632 0.00 0.00 44.05 4.70
528 529 0.530288 GCAAGGGGCTAAATGCGAAA 59.470 50.000 0.00 0.00 44.05 3.46
529 530 1.067213 GCAAGGGGCTAAATGCGAAAA 60.067 47.619 0.00 0.00 44.05 2.29
530 531 2.879826 CAAGGGGCTAAATGCGAAAAG 58.120 47.619 0.00 0.00 44.05 2.27
531 532 2.215942 AGGGGCTAAATGCGAAAAGT 57.784 45.000 0.00 0.00 44.05 2.66
532 533 1.818674 AGGGGCTAAATGCGAAAAGTG 59.181 47.619 0.00 0.00 44.05 3.16
533 534 1.629013 GGGCTAAATGCGAAAAGTGC 58.371 50.000 0.00 0.00 44.05 4.40
534 535 1.259316 GGCTAAATGCGAAAAGTGCG 58.741 50.000 0.00 0.00 44.05 5.34
535 536 1.259316 GCTAAATGCGAAAAGTGCGG 58.741 50.000 0.00 0.00 34.24 5.69
536 537 1.259316 CTAAATGCGAAAAGTGCGGC 58.741 50.000 0.00 0.00 34.24 6.53
537 538 0.453615 TAAATGCGAAAAGTGCGGCG 60.454 50.000 0.51 0.51 34.24 6.46
541 542 3.711842 CGAAAAGTGCGGCGCTGA 61.712 61.111 33.26 11.23 0.00 4.26
542 543 2.127232 GAAAAGTGCGGCGCTGAC 60.127 61.111 33.26 23.21 0.00 3.51
543 544 3.595108 GAAAAGTGCGGCGCTGACC 62.595 63.158 33.26 17.29 0.00 4.02
568 569 2.439701 CCCAGCTGGCTCCACATG 60.440 66.667 28.39 7.14 0.00 3.21
569 570 2.439701 CCAGCTGGCTCCACATGG 60.440 66.667 22.33 0.00 0.00 3.66
570 571 3.138798 CAGCTGGCTCCACATGGC 61.139 66.667 5.57 0.00 34.44 4.40
571 572 3.336568 AGCTGGCTCCACATGGCT 61.337 61.111 0.00 0.00 34.44 4.75
572 573 3.138798 GCTGGCTCCACATGGCTG 61.139 66.667 0.00 0.00 34.44 4.85
573 574 2.353958 CTGGCTCCACATGGCTGT 59.646 61.111 0.00 0.00 35.44 4.40
574 575 1.303888 CTGGCTCCACATGGCTGTT 60.304 57.895 0.00 0.00 31.62 3.16
575 576 1.592400 CTGGCTCCACATGGCTGTTG 61.592 60.000 0.00 0.00 31.62 3.33
576 577 1.604593 GGCTCCACATGGCTGTTGT 60.605 57.895 0.00 0.00 31.62 3.32
577 578 1.181098 GGCTCCACATGGCTGTTGTT 61.181 55.000 0.00 0.00 31.62 2.83
578 579 0.038892 GCTCCACATGGCTGTTGTTG 60.039 55.000 0.00 0.00 31.62 3.33
579 580 1.608055 CTCCACATGGCTGTTGTTGA 58.392 50.000 0.00 0.00 31.62 3.18
580 581 2.165167 CTCCACATGGCTGTTGTTGAT 58.835 47.619 0.00 0.00 31.62 2.57
581 582 2.559668 CTCCACATGGCTGTTGTTGATT 59.440 45.455 0.00 0.00 31.62 2.57
582 583 2.296752 TCCACATGGCTGTTGTTGATTG 59.703 45.455 0.00 0.00 31.62 2.67
583 584 2.296752 CCACATGGCTGTTGTTGATTGA 59.703 45.455 0.00 0.00 31.62 2.57
584 585 3.311106 CACATGGCTGTTGTTGATTGAC 58.689 45.455 0.00 0.00 31.62 3.18
585 586 2.297033 ACATGGCTGTTGTTGATTGACC 59.703 45.455 0.00 0.00 28.70 4.02
586 587 1.327303 TGGCTGTTGTTGATTGACCC 58.673 50.000 0.00 0.00 0.00 4.46
587 588 1.327303 GGCTGTTGTTGATTGACCCA 58.673 50.000 0.00 0.00 0.00 4.51
588 589 1.270550 GGCTGTTGTTGATTGACCCAG 59.729 52.381 0.00 0.00 0.00 4.45
589 590 1.270550 GCTGTTGTTGATTGACCCAGG 59.729 52.381 0.00 0.00 0.00 4.45
590 591 2.862541 CTGTTGTTGATTGACCCAGGA 58.137 47.619 0.00 0.00 0.00 3.86
591 592 2.554032 CTGTTGTTGATTGACCCAGGAC 59.446 50.000 0.00 0.00 0.00 3.85
592 593 1.886542 GTTGTTGATTGACCCAGGACC 59.113 52.381 0.00 0.00 0.00 4.46
593 594 1.144691 TGTTGATTGACCCAGGACCA 58.855 50.000 0.00 0.00 0.00 4.02
594 595 1.496857 TGTTGATTGACCCAGGACCAA 59.503 47.619 0.00 0.00 0.00 3.67
595 596 2.091610 TGTTGATTGACCCAGGACCAAA 60.092 45.455 0.00 0.00 0.00 3.28
596 597 3.165071 GTTGATTGACCCAGGACCAAAT 58.835 45.455 0.00 0.00 0.00 2.32
597 598 2.806434 TGATTGACCCAGGACCAAATG 58.194 47.619 0.00 0.00 0.00 2.32
598 599 1.478105 GATTGACCCAGGACCAAATGC 59.522 52.381 0.00 0.00 0.00 3.56
599 600 0.893270 TTGACCCAGGACCAAATGCG 60.893 55.000 0.00 0.00 0.00 4.73
600 601 2.676471 ACCCAGGACCAAATGCGC 60.676 61.111 0.00 0.00 0.00 6.09
601 602 2.676121 CCCAGGACCAAATGCGCA 60.676 61.111 14.96 14.96 0.00 6.09
602 603 2.568090 CCAGGACCAAATGCGCAC 59.432 61.111 14.90 0.00 0.00 5.34
603 604 2.267351 CCAGGACCAAATGCGCACA 61.267 57.895 14.90 0.00 0.00 4.57
604 605 1.597797 CCAGGACCAAATGCGCACAT 61.598 55.000 14.90 0.54 38.49 3.21
605 606 0.179156 CAGGACCAAATGCGCACATC 60.179 55.000 14.90 5.90 34.62 3.06
606 607 1.139520 GGACCAAATGCGCACATCC 59.860 57.895 14.90 11.93 34.62 3.51
607 608 1.226379 GACCAAATGCGCACATCCG 60.226 57.895 14.90 1.36 34.62 4.18
608 609 1.643868 GACCAAATGCGCACATCCGA 61.644 55.000 14.90 0.00 34.62 4.55
609 610 1.063006 CCAAATGCGCACATCCGAG 59.937 57.895 14.90 0.00 34.62 4.63
610 611 1.368345 CCAAATGCGCACATCCGAGA 61.368 55.000 14.90 0.00 34.62 4.04
611 612 0.247814 CAAATGCGCACATCCGAGAC 60.248 55.000 14.90 0.00 34.62 3.36
612 613 0.673333 AAATGCGCACATCCGAGACA 60.673 50.000 14.90 0.00 34.62 3.41
613 614 0.673333 AATGCGCACATCCGAGACAA 60.673 50.000 14.90 0.00 34.62 3.18
614 615 1.086067 ATGCGCACATCCGAGACAAG 61.086 55.000 14.90 0.00 0.00 3.16
615 616 1.738099 GCGCACATCCGAGACAAGT 60.738 57.895 0.30 0.00 0.00 3.16
616 617 1.291877 GCGCACATCCGAGACAAGTT 61.292 55.000 0.30 0.00 0.00 2.66
617 618 1.148310 CGCACATCCGAGACAAGTTT 58.852 50.000 0.00 0.00 0.00 2.66
618 619 1.126846 CGCACATCCGAGACAAGTTTC 59.873 52.381 0.00 0.00 0.00 2.78
619 620 2.143122 GCACATCCGAGACAAGTTTCA 58.857 47.619 0.00 0.00 0.00 2.69
620 621 2.158449 GCACATCCGAGACAAGTTTCAG 59.842 50.000 0.00 0.00 0.00 3.02
621 622 2.738846 CACATCCGAGACAAGTTTCAGG 59.261 50.000 0.00 0.00 0.00 3.86
622 623 2.632996 ACATCCGAGACAAGTTTCAGGA 59.367 45.455 6.73 6.73 0.00 3.86
623 624 2.814280 TCCGAGACAAGTTTCAGGAC 57.186 50.000 0.00 0.00 0.00 3.85
624 625 1.343465 TCCGAGACAAGTTTCAGGACC 59.657 52.381 0.00 0.00 0.00 4.46
625 626 1.070134 CCGAGACAAGTTTCAGGACCA 59.930 52.381 0.00 0.00 0.00 4.02
626 627 2.484770 CCGAGACAAGTTTCAGGACCAA 60.485 50.000 0.00 0.00 0.00 3.67
627 628 3.202906 CGAGACAAGTTTCAGGACCAAA 58.797 45.455 0.00 0.00 0.00 3.28
628 629 3.815401 CGAGACAAGTTTCAGGACCAAAT 59.185 43.478 0.00 0.00 0.00 2.32
629 630 4.994852 CGAGACAAGTTTCAGGACCAAATA 59.005 41.667 0.00 0.00 0.00 1.40
630 631 5.468746 CGAGACAAGTTTCAGGACCAAATAA 59.531 40.000 0.00 0.00 0.00 1.40
631 632 6.149474 CGAGACAAGTTTCAGGACCAAATAAT 59.851 38.462 0.00 0.00 0.00 1.28
632 633 7.454260 AGACAAGTTTCAGGACCAAATAATC 57.546 36.000 0.00 0.00 0.00 1.75
633 634 6.434340 AGACAAGTTTCAGGACCAAATAATCC 59.566 38.462 0.00 0.00 34.98 3.01
634 635 6.074648 ACAAGTTTCAGGACCAAATAATCCA 58.925 36.000 0.00 0.00 37.47 3.41
635 636 6.015434 ACAAGTTTCAGGACCAAATAATCCAC 60.015 38.462 0.00 0.00 37.47 4.02
636 637 5.892348 AGTTTCAGGACCAAATAATCCACT 58.108 37.500 0.00 0.00 37.47 4.00
637 638 6.314917 AGTTTCAGGACCAAATAATCCACTT 58.685 36.000 0.00 0.00 37.47 3.16
638 639 6.782494 AGTTTCAGGACCAAATAATCCACTTT 59.218 34.615 0.00 0.00 37.47 2.66
639 640 7.290014 AGTTTCAGGACCAAATAATCCACTTTT 59.710 33.333 0.00 0.00 37.47 2.27
640 641 6.588719 TCAGGACCAAATAATCCACTTTTG 57.411 37.500 0.00 0.00 37.47 2.44
641 642 5.047377 TCAGGACCAAATAATCCACTTTTGC 60.047 40.000 0.00 0.00 37.47 3.68
642 643 4.837860 AGGACCAAATAATCCACTTTTGCA 59.162 37.500 0.00 0.00 37.47 4.08
643 644 5.306678 AGGACCAAATAATCCACTTTTGCAA 59.693 36.000 0.00 0.00 37.47 4.08
644 645 5.639082 GGACCAAATAATCCACTTTTGCAAG 59.361 40.000 0.00 0.00 34.87 4.01
645 646 6.173427 ACCAAATAATCCACTTTTGCAAGT 57.827 33.333 0.00 0.00 44.72 3.16
646 647 6.591001 ACCAAATAATCCACTTTTGCAAGTT 58.409 32.000 0.00 0.00 40.66 2.66
647 648 7.053498 ACCAAATAATCCACTTTTGCAAGTTT 58.947 30.769 0.00 0.00 40.66 2.66
648 649 7.012232 ACCAAATAATCCACTTTTGCAAGTTTG 59.988 33.333 0.00 0.00 40.66 2.93
649 650 7.226325 CCAAATAATCCACTTTTGCAAGTTTGA 59.774 33.333 0.00 0.00 40.66 2.69
650 651 7.951530 AATAATCCACTTTTGCAAGTTTGAG 57.048 32.000 0.00 0.00 40.66 3.02
651 652 3.799281 TCCACTTTTGCAAGTTTGAGG 57.201 42.857 0.00 0.00 40.66 3.86
652 653 3.360867 TCCACTTTTGCAAGTTTGAGGA 58.639 40.909 0.00 1.38 40.66 3.71
653 654 3.130340 TCCACTTTTGCAAGTTTGAGGAC 59.870 43.478 0.00 0.00 40.66 3.85
654 655 3.447742 CACTTTTGCAAGTTTGAGGACC 58.552 45.455 0.00 0.00 40.66 4.46
655 656 3.096092 ACTTTTGCAAGTTTGAGGACCA 58.904 40.909 0.00 0.00 40.66 4.02
656 657 3.513515 ACTTTTGCAAGTTTGAGGACCAA 59.486 39.130 0.00 0.00 40.66 3.67
657 658 4.020662 ACTTTTGCAAGTTTGAGGACCAAA 60.021 37.500 0.00 0.00 40.66 3.28
664 665 2.421751 TTTGAGGACCAAACCGAACA 57.578 45.000 0.00 0.00 39.65 3.18
665 666 2.421751 TTGAGGACCAAACCGAACAA 57.578 45.000 0.00 0.00 34.73 2.83
666 667 1.961793 TGAGGACCAAACCGAACAAG 58.038 50.000 0.00 0.00 34.73 3.16
667 668 1.210967 TGAGGACCAAACCGAACAAGT 59.789 47.619 0.00 0.00 34.73 3.16
668 669 2.294979 GAGGACCAAACCGAACAAGTT 58.705 47.619 0.00 0.00 34.73 2.66
669 670 2.289820 GAGGACCAAACCGAACAAGTTC 59.710 50.000 2.89 2.89 36.29 3.01
670 671 2.018515 GGACCAAACCGAACAAGTTCA 58.981 47.619 12.86 0.00 39.46 3.18
671 672 2.424246 GGACCAAACCGAACAAGTTCAA 59.576 45.455 12.86 0.00 39.46 2.69
672 673 3.488553 GGACCAAACCGAACAAGTTCAAG 60.489 47.826 12.86 6.18 39.46 3.02
673 674 2.425668 ACCAAACCGAACAAGTTCAAGG 59.574 45.455 12.86 9.00 39.46 3.61
674 675 2.685897 CCAAACCGAACAAGTTCAAGGA 59.314 45.455 12.86 0.00 39.46 3.36
675 676 3.488553 CCAAACCGAACAAGTTCAAGGAC 60.489 47.826 12.86 0.00 39.46 3.85
676 677 1.963172 ACCGAACAAGTTCAAGGACC 58.037 50.000 12.86 0.00 39.46 4.46
677 678 1.489230 ACCGAACAAGTTCAAGGACCT 59.511 47.619 12.86 0.00 39.46 3.85
678 679 1.873591 CCGAACAAGTTCAAGGACCTG 59.126 52.381 12.86 0.00 39.46 4.00
679 680 2.561569 CGAACAAGTTCAAGGACCTGT 58.438 47.619 12.86 0.00 39.46 4.00
680 681 3.493699 CCGAACAAGTTCAAGGACCTGTA 60.494 47.826 12.86 0.00 39.46 2.74
681 682 3.741344 CGAACAAGTTCAAGGACCTGTAG 59.259 47.826 12.86 0.00 39.46 2.74
682 683 4.704965 GAACAAGTTCAAGGACCTGTAGT 58.295 43.478 8.01 0.00 39.31 2.73
683 684 4.073293 ACAAGTTCAAGGACCTGTAGTG 57.927 45.455 0.00 0.00 0.00 2.74
684 685 2.808543 CAAGTTCAAGGACCTGTAGTGC 59.191 50.000 0.00 0.00 37.00 4.40
692 693 4.267341 AGGACCTGTAGTGCTATTACCT 57.733 45.455 0.00 0.00 46.79 3.08
693 694 4.216708 AGGACCTGTAGTGCTATTACCTC 58.783 47.826 0.00 0.00 46.79 3.85
694 695 3.958798 GGACCTGTAGTGCTATTACCTCA 59.041 47.826 0.00 0.00 33.19 3.86
695 696 4.589374 GGACCTGTAGTGCTATTACCTCAT 59.411 45.833 0.00 0.00 33.19 2.90
696 697 5.773680 GGACCTGTAGTGCTATTACCTCATA 59.226 44.000 0.00 0.00 33.19 2.15
697 698 6.071840 GGACCTGTAGTGCTATTACCTCATAG 60.072 46.154 0.00 0.00 33.19 2.23
698 699 6.374588 ACCTGTAGTGCTATTACCTCATAGT 58.625 40.000 0.00 0.00 0.00 2.12
699 700 6.839657 ACCTGTAGTGCTATTACCTCATAGTT 59.160 38.462 0.00 0.00 0.00 2.24
813 814 3.050619 AGTGACGAGACAAATGACGAAC 58.949 45.455 0.00 0.00 0.00 3.95
862 863 2.885861 GCGTGGACGGAGATCACT 59.114 61.111 0.71 0.00 40.23 3.41
866 867 1.732732 CGTGGACGGAGATCACTGAAC 60.733 57.143 5.93 1.03 33.63 3.18
956 957 2.823747 GAGGACGGCACCCTTAAAATTT 59.176 45.455 0.00 0.00 33.36 1.82
971 972 6.070251 CCTTAAAATTTGGGTATTTGCTCCCT 60.070 38.462 0.00 0.00 43.74 4.20
978 979 1.685180 GGTATTTGCTCCCTTGTCCCC 60.685 57.143 0.00 0.00 0.00 4.81
1011 1012 1.088340 CAGAAGACATGGCTGCTCCG 61.088 60.000 5.89 0.00 37.80 4.63
1038 1039 3.083997 GCGGAGGTGGAGGTGGAT 61.084 66.667 0.00 0.00 0.00 3.41
1258 1273 5.991606 TGGATCAAAGTTACAAGACTGTCAG 59.008 40.000 10.88 0.00 36.96 3.51
1364 1380 5.112129 AGTCAGGTTTTACTTTCAGGTGT 57.888 39.130 0.00 0.00 0.00 4.16
1368 1384 4.036380 CAGGTTTTACTTTCAGGTGTGTCC 59.964 45.833 0.00 0.00 0.00 4.02
1422 1439 6.324254 AGTTAAGACTCAAGAGTACAACACCT 59.676 38.462 16.63 3.07 42.66 4.00
1432 1449 4.283722 AGAGTACAACACCTAAAGTCAGGG 59.716 45.833 0.00 0.00 40.29 4.45
1433 1450 2.271944 ACAACACCTAAAGTCAGGGC 57.728 50.000 0.00 0.00 40.29 5.19
1442 1459 2.851263 AAAGTCAGGGCGAACACATA 57.149 45.000 0.00 0.00 0.00 2.29
1454 1471 4.694037 GGCGAACACATAAAAAGTACTCCT 59.306 41.667 0.00 0.00 0.00 3.69
1472 1489 9.670442 AGTACTCCTTTTGTCCCATAATATAGA 57.330 33.333 0.00 0.00 0.00 1.98
1491 1508 3.359654 AGAACGTTTTTGCAAGCTAACG 58.640 40.909 27.26 27.26 46.26 3.18
1566 1583 2.287915 ACGCTGACATTGTTCTTCACAC 59.712 45.455 0.00 0.00 33.98 3.82
1616 1633 7.669722 TCTTTATGCTCTACAAAGAAATGGGTT 59.330 33.333 0.00 0.00 35.83 4.11
1619 1636 5.136828 TGCTCTACAAAGAAATGGGTTGAA 58.863 37.500 0.00 0.00 0.00 2.69
1620 1637 5.774690 TGCTCTACAAAGAAATGGGTTGAAT 59.225 36.000 0.00 0.00 0.00 2.57
1622 1639 6.024552 TCTACAAAGAAATGGGTTGAATGC 57.975 37.500 0.00 0.00 0.00 3.56
1639 1656 1.939974 TGCTATGCGTTCATCCTCAC 58.060 50.000 0.00 0.00 34.22 3.51
1667 1684 4.730966 ACCTCTTGAGCTCCGATTATCTA 58.269 43.478 12.15 0.00 0.00 1.98
1684 1701 7.171508 CGATTATCTATTGAGCTACCAGCAAAA 59.828 37.037 0.38 0.00 45.56 2.44
1685 1702 8.930846 ATTATCTATTGAGCTACCAGCAAAAT 57.069 30.769 0.38 2.86 45.56 1.82
1687 1704 9.845740 TTATCTATTGAGCTACCAGCAAAATTA 57.154 29.630 0.38 0.00 45.56 1.40
1688 1705 8.930846 ATCTATTGAGCTACCAGCAAAATTAT 57.069 30.769 0.38 0.00 45.56 1.28
1689 1706 8.752005 TCTATTGAGCTACCAGCAAAATTATT 57.248 30.769 0.38 0.00 45.56 1.40
1690 1707 9.845740 TCTATTGAGCTACCAGCAAAATTATTA 57.154 29.630 0.38 0.00 45.56 0.98
1694 1711 8.696043 TGAGCTACCAGCAAAATTATTATCAT 57.304 30.769 0.38 0.00 45.56 2.45
1785 1802 6.482898 TTTGTACAGAGTTACAGGGTACAA 57.517 37.500 16.12 16.12 46.93 2.41
1798 1815 2.106511 AGGGTACAATGACACAAGTGCT 59.893 45.455 0.00 0.00 0.00 4.40
1923 1940 8.777413 GTCTTGCATGCAATTTAGATATGTCTA 58.223 33.333 31.96 5.49 34.22 2.59
2028 2045 9.780413 CATCTTTTAAATAAGAGAAGACAAGCC 57.220 33.333 0.00 0.00 37.55 4.35
2043 2060 5.143369 AGACAAGCCCTTTCTTCTGATTTT 58.857 37.500 0.00 0.00 0.00 1.82
2049 2066 6.073981 AGCCCTTTCTTCTGATTTTTCTCTT 58.926 36.000 0.00 0.00 0.00 2.85
2053 2070 7.665145 CCCTTTCTTCTGATTTTTCTCTTCTCT 59.335 37.037 0.00 0.00 0.00 3.10
2178 2195 7.009265 CCATAGTAATTGTACTTGTCAGTGTCG 59.991 40.741 0.00 0.00 41.06 4.35
2194 2211 3.568853 AGTGTCGGACTAGGGATTATTCG 59.431 47.826 9.88 0.00 30.86 3.34
2230 2247 4.610605 TGTAAGTAGGCTTGCTTGTACA 57.389 40.909 9.45 3.99 38.03 2.90
2248 2265 6.239217 TGTACATGAGCTTCATATGGACTT 57.761 37.500 0.00 0.00 36.75 3.01
2266 2283 1.815003 CTTGGGTCTTGCTAGCTTTGG 59.185 52.381 17.23 3.55 0.00 3.28
2268 2285 1.168714 GGGTCTTGCTAGCTTTGGTG 58.831 55.000 17.23 0.00 0.00 4.17
2317 2334 3.367087 GCAGGTCGTGGCTTCGTATATAT 60.367 47.826 0.00 0.00 0.00 0.86
2340 2357 0.673644 AGGCTAATGCGCGTTTCACT 60.674 50.000 21.69 12.75 40.82 3.41
2416 2558 9.672086 TTATTATCTGTTGTTTCGTTTTTGGAG 57.328 29.630 0.00 0.00 0.00 3.86
2432 2574 6.639632 TTTTGGAGTGTAGTCTACGTTAGT 57.360 37.500 5.55 0.00 0.00 2.24
2471 2614 7.766738 CCGCAAATAAAGGGGTTTTAATTATGT 59.233 33.333 0.00 0.00 35.03 2.29
2521 2664 2.234661 TGTTGGGTTGTTGATGCAAACA 59.765 40.909 0.00 0.00 37.77 2.83
2536 2679 3.071479 GCAAACAGTATTCGTTCTGGGA 58.929 45.455 0.00 0.00 36.17 4.37
2592 2735 0.742990 CACCCATTTCGGCTTCGCTA 60.743 55.000 0.00 0.00 0.00 4.26
2635 2778 9.823098 CTTGAGAGTTCTTATTTCACATTGAAG 57.177 33.333 0.00 0.00 37.70 3.02
2638 2781 6.716628 AGAGTTCTTATTTCACATTGAAGCCA 59.283 34.615 0.00 0.00 37.70 4.75
2683 2827 3.521796 GGCCGGCCATGAAGCTTC 61.522 66.667 40.73 19.89 35.81 3.86
2721 2865 1.185618 TCCGTGCTCCACTTGCTAGT 61.186 55.000 0.00 0.00 34.00 2.57
2732 2876 4.578928 TCCACTTGCTAGTTTCAGGTTTTC 59.421 41.667 0.00 0.00 30.26 2.29
2733 2877 4.261614 CCACTTGCTAGTTTCAGGTTTTCC 60.262 45.833 0.00 0.00 34.26 3.13
2738 2882 3.497942 GCTAGTTTCAGGTTTTCCCTCCA 60.498 47.826 0.00 0.00 43.86 3.86
3186 3354 4.072131 GGCAATACCTTCTCAAACTGACA 58.928 43.478 0.00 0.00 34.51 3.58
3193 3361 0.397941 TCTCAAACTGACAGCCCCAG 59.602 55.000 1.25 0.00 37.64 4.45
3194 3362 0.109342 CTCAAACTGACAGCCCCAGT 59.891 55.000 1.25 0.00 45.88 4.00
3224 3392 2.171870 CCCTTACACGTGGGGTTCATAT 59.828 50.000 21.57 0.00 39.76 1.78
3227 3395 2.396590 ACACGTGGGGTTCATATCAC 57.603 50.000 21.57 0.00 0.00 3.06
3228 3396 1.065709 ACACGTGGGGTTCATATCACC 60.066 52.381 21.57 0.00 0.00 4.02
3250 3418 0.037303 CATAGCCCCCTATGCACCAG 59.963 60.000 0.00 0.00 43.09 4.00
3271 3439 5.435291 CAGATTGCTTCAAATCTAGGGAGT 58.565 41.667 0.00 0.00 43.50 3.85
3278 3446 6.213600 TGCTTCAAATCTAGGGAGTTTAGAGT 59.786 38.462 0.00 0.00 31.17 3.24
3294 3462 1.789506 GAGTATCTCCAGCCATTCGC 58.210 55.000 0.00 0.00 37.98 4.70
3314 3482 3.520623 CCCCAGGGGCTTGAAATAG 57.479 57.895 13.35 0.00 35.35 1.73
3315 3483 0.756815 CCCCAGGGGCTTGAAATAGC 60.757 60.000 13.35 0.00 35.35 2.97
3316 3484 1.103398 CCCAGGGGCTTGAAATAGCG 61.103 60.000 0.00 0.00 42.15 4.26
3319 3487 2.715624 GGGCTTGAAATAGCGCCG 59.284 61.111 2.29 0.00 45.37 6.46
3320 3488 2.112815 GGGCTTGAAATAGCGCCGT 61.113 57.895 2.29 0.00 45.37 5.68
3323 3491 0.026803 GCTTGAAATAGCGCCGTCTG 59.973 55.000 2.29 0.00 0.00 3.51
3334 3502 4.047125 CCGTCTGGGGGCCAACAT 62.047 66.667 4.39 0.00 30.80 2.71
3335 3503 2.675242 CCGTCTGGGGGCCAACATA 61.675 63.158 4.39 0.00 30.80 2.29
3340 3508 0.762418 CTGGGGGCCAACATACGATA 59.238 55.000 4.39 0.00 30.80 2.92
3344 3512 3.227614 GGGGGCCAACATACGATAAAAT 58.772 45.455 4.39 0.00 0.00 1.82
3345 3513 3.005367 GGGGGCCAACATACGATAAAATG 59.995 47.826 4.39 0.00 0.00 2.32
3346 3514 3.005367 GGGGCCAACATACGATAAAATGG 59.995 47.826 4.39 0.00 0.00 3.16
3347 3515 3.005367 GGGCCAACATACGATAAAATGGG 59.995 47.826 4.39 0.00 0.00 4.00
3350 3518 4.261994 GCCAACATACGATAAAATGGGCAT 60.262 41.667 0.00 0.00 33.27 4.40
3351 3519 5.221880 CCAACATACGATAAAATGGGCATG 58.778 41.667 0.00 0.00 0.00 4.06
3353 3521 3.826157 ACATACGATAAAATGGGCATGGG 59.174 43.478 0.00 0.00 0.00 4.00
3358 3526 2.230189 TAAAATGGGCATGGGGGCGA 62.230 55.000 0.00 0.00 44.56 5.54
3359 3527 4.839706 AATGGGCATGGGGGCGAC 62.840 66.667 0.00 0.00 44.56 5.19
3386 3568 2.520458 CCAAGGTTGCCCCAGACA 59.480 61.111 0.00 0.00 34.66 3.41
3394 3580 1.104577 TTGCCCCAGACACCGTTTTC 61.105 55.000 0.00 0.00 0.00 2.29
3555 3818 1.147153 GCCGCCTTGAGCCTTCTAT 59.853 57.895 0.00 0.00 38.78 1.98
3605 3928 3.818787 GTCGTCGCCGCCTTCCTA 61.819 66.667 0.00 0.00 0.00 2.94
3817 4229 2.877975 CCCATTTCAGGCTGGTCTG 58.122 57.895 15.73 9.15 36.17 3.51
3851 4266 2.592102 TGGCTTCATGCTCCTTCTTT 57.408 45.000 0.00 0.00 42.39 2.52
3902 4347 4.507916 CGAGGCGGGAGGAGGAGA 62.508 72.222 0.00 0.00 0.00 3.71
3914 4365 1.289530 AGGAGGAGACCGGAGAAGAAT 59.710 52.381 9.46 0.00 34.73 2.40
3916 4367 2.379972 GAGGAGACCGGAGAAGAATGA 58.620 52.381 9.46 0.00 0.00 2.57
3945 4399 4.693532 GTTGATGACGAGGGCACA 57.306 55.556 0.00 0.00 0.00 4.57
4051 4518 1.285023 CGAGGACAAGGACGTCGTT 59.715 57.895 17.29 17.29 39.61 3.85
4128 4603 3.997397 TACTCCAACCGCAGCGCA 61.997 61.111 11.47 0.00 0.00 6.09
4236 4734 0.511221 CGCGAGGTTCAATGTCGTTT 59.489 50.000 0.00 0.00 36.09 3.60
4327 4857 1.448540 CTCCGGCAGCGACAATCTT 60.449 57.895 0.00 0.00 0.00 2.40
4340 4881 3.424039 CGACAATCTTATGCATGCGATCC 60.424 47.826 14.09 3.91 0.00 3.36
4341 4882 3.748083 ACAATCTTATGCATGCGATCCT 58.252 40.909 14.09 0.00 0.00 3.24
4412 4953 3.992406 TCATCCTCCATGAGCCCC 58.008 61.111 0.00 0.00 36.51 5.80
4570 5168 2.527875 GGGGAGAGGGGCATCGAT 60.528 66.667 0.00 0.00 0.00 3.59
4588 5191 0.689080 ATGACGAGAGGGGCATCACT 60.689 55.000 0.00 0.00 0.00 3.41
4589 5192 0.033503 TGACGAGAGGGGCATCACTA 60.034 55.000 0.00 0.00 0.00 2.74
4629 5277 4.742201 CGAGGGAGTGTGTGGCCG 62.742 72.222 0.00 0.00 0.00 6.13
4659 5311 5.289510 AGGGAGGGTGACTTTTATAGTGAT 58.710 41.667 0.00 0.00 37.17 3.06
4814 5486 2.073816 CGCAGGAAAACGAGGTAATGT 58.926 47.619 0.00 0.00 0.00 2.71
4889 5593 1.460273 AAAATGTTTCCCACGGCGCT 61.460 50.000 6.90 0.00 0.00 5.92
4943 5650 1.974875 GTCCCCCGGCGTCAAATTT 60.975 57.895 6.01 0.00 0.00 1.82
4982 5690 6.601224 AAAGTGGGCTTCTGAGGACGTAAG 62.601 50.000 0.00 0.00 37.38 2.34
5090 5807 9.466497 AATTGATATATACATAAGGTTGCCTGG 57.534 33.333 0.00 0.00 32.13 4.45
5100 5924 1.063567 AGGTTGCCTGGGTTTTGTACA 60.064 47.619 0.00 0.00 29.57 2.90
5143 5967 9.259832 AGAATAAAAGAACAAAGGGCAAGATAT 57.740 29.630 0.00 0.00 0.00 1.63
5286 6110 0.605319 GAATGTCGGGTCACTTGGCA 60.605 55.000 0.00 0.00 0.00 4.92
5475 6414 4.654262 CCTTCTTTAGCCTCCTGGTATGTA 59.346 45.833 0.00 0.00 35.27 2.29
5491 6430 4.817464 GGTATGTATATGCCACGGTCAAAA 59.183 41.667 1.60 0.00 38.77 2.44
5518 6458 0.843309 TCAGCCCTGTTTCACCTTCA 59.157 50.000 0.00 0.00 0.00 3.02
5571 6513 0.034863 GGACAATTGGCCTCCCGTTA 60.035 55.000 24.00 0.00 41.12 3.18
5676 6618 0.538118 GCATGTGTTTGGGCATCCAT 59.462 50.000 0.00 0.00 43.63 3.41
5692 6636 1.992557 TCCATCAAACACCCCTAGCTT 59.007 47.619 0.00 0.00 0.00 3.74
5789 6733 7.308435 CCACTAGCAATAGAAAAACTCCAAAG 58.692 38.462 0.00 0.00 0.00 2.77
5871 8762 7.177041 TCAAAGAATGACACCATGATTGAATCA 59.823 33.333 10.65 10.65 37.07 2.57
6018 8932 9.166126 CATGAGTCAATGATGAACAATTTATCG 57.834 33.333 0.00 0.00 37.30 2.92
6042 8956 5.694458 GGCTTATTACCACAACAAAACTTGG 59.306 40.000 0.00 0.00 35.06 3.61
6291 9208 4.736793 CAGACTGCAATCAAACAGTTCAAC 59.263 41.667 0.00 0.00 46.82 3.18
6329 9246 1.701847 AGTCCATCAACACTCCAGCTT 59.298 47.619 0.00 0.00 0.00 3.74
6395 9312 1.667236 CAATCCGACCATGCAGCTTA 58.333 50.000 0.00 0.00 0.00 3.09
6430 9347 5.595885 AGACCAATTCGACATGACTGATAG 58.404 41.667 0.00 0.00 0.00 2.08
6646 9563 1.273838 ACCACCAGAGGGAAGCATCTA 60.274 52.381 0.00 0.00 38.05 1.98
6711 9628 2.365617 AGACTCAAGCTTCCAAACTCGA 59.634 45.455 0.00 0.00 0.00 4.04
6713 9630 3.744660 ACTCAAGCTTCCAAACTCGAAT 58.255 40.909 0.00 0.00 0.00 3.34
6820 9737 9.281371 GTTCAGGTAAACTAAAGAAGTAACCAT 57.719 33.333 10.50 0.00 42.76 3.55
7102 10020 4.669965 CGCTCGACAACATCATCAAACAAT 60.670 41.667 0.00 0.00 0.00 2.71
7206 10126 6.606234 TCGTTCAGATCACTAGTCATCTAC 57.394 41.667 9.14 4.41 0.00 2.59
7212 10132 5.628606 CAGATCACTAGTCATCTACGCAATG 59.371 44.000 9.14 0.00 0.00 2.82
7214 10134 5.576447 TCACTAGTCATCTACGCAATGAA 57.424 39.130 0.00 0.00 35.04 2.57
7342 10283 8.975410 AATATAAATAGCGCGTTAGACATACA 57.025 30.769 8.43 0.00 0.00 2.29
7415 10523 9.922477 TGTATACCCACCATTTATTGTCATTTA 57.078 29.630 0.00 0.00 0.00 1.40
7501 10609 4.562143 GCAAGAAATTCATGGGAGCTTTGT 60.562 41.667 0.29 0.00 0.00 2.83
7775 10883 3.684788 CGGAGTGGAAAGTGGAATTACAG 59.315 47.826 0.00 0.00 0.00 2.74
7789 10897 6.706270 GTGGAATTACAGTTCTTCAGAGACAA 59.294 38.462 0.00 0.00 0.00 3.18
8056 11164 2.170607 TGGAGCAGGCTATTTGAGTACC 59.829 50.000 0.00 0.00 0.00 3.34
8077 11185 4.158384 CCGCTATGACAAACATCACAAAC 58.842 43.478 0.00 0.00 40.07 2.93
8097 11205 3.839293 ACAAAGTGACTACGAGAGATGC 58.161 45.455 0.00 0.00 0.00 3.91
8105 11213 1.336440 CTACGAGAGATGCCCACAGAG 59.664 57.143 0.00 0.00 0.00 3.35
8312 11420 0.755686 CCCCAGTAGAGATGCACCTC 59.244 60.000 0.00 0.00 0.00 3.85
8415 11523 7.496529 ACTACATGGCACATGACATTATTAC 57.503 36.000 18.41 0.00 42.08 1.89
8480 11589 5.030147 AGGATGTATGACTGTTACCCAAGA 58.970 41.667 0.00 0.00 0.00 3.02
8502 11611 9.387123 CAAGAAGTATCAACAAAGAGCTAAAAC 57.613 33.333 0.00 0.00 0.00 2.43
8572 11681 7.162082 AGTGAACCCAACAATTTTGTACAAAA 58.838 30.769 30.29 30.29 41.31 2.44
8679 11790 8.758829 ACTTGTTAGTACATCTTCATGTATGGA 58.241 33.333 0.00 0.00 45.38 3.41
8687 11798 6.892485 ACATCTTCATGTATGGATGTTCTCA 58.108 36.000 14.58 0.00 43.95 3.27
8727 11838 9.691362 AAAAACTTATGTATGGCTTGTTACTTG 57.309 29.630 0.00 0.00 0.00 3.16
8737 11848 6.959671 TGGCTTGTTACTTGTTTTGAAAAG 57.040 33.333 0.00 0.00 0.00 2.27
8854 11965 3.055747 GCTAGTTTACTTCACTGGAGGCT 60.056 47.826 0.00 0.00 0.00 4.58
8861 11972 1.059584 TTCACTGGAGGCTTGGTCCA 61.060 55.000 0.00 0.00 42.06 4.02
8875 11986 4.218417 GCTTGGTCCACACATAGTTGATTT 59.782 41.667 0.00 0.00 0.00 2.17
8909 12020 2.841881 TGTTTTAGGCCCTAGTCCGATT 59.158 45.455 0.00 0.00 0.00 3.34
8920 12031 5.998363 GCCCTAGTCCGATTCTAAAATGATT 59.002 40.000 0.00 0.00 0.00 2.57
8983 12094 9.107177 ACTATATACCTAAATAGTCGACCATCG 57.893 37.037 13.01 0.00 42.10 3.84
9001 12112 5.935789 ACCATCGCTACTTGTTTTAGCTTAA 59.064 36.000 0.00 0.00 39.96 1.85
9002 12113 6.598064 ACCATCGCTACTTGTTTTAGCTTAAT 59.402 34.615 0.00 0.00 39.96 1.40
9016 12127 9.950680 GTTTTAGCTTAATATATGCACACATGT 57.049 29.630 0.00 0.00 37.04 3.21
9059 12170 5.473162 TCACCACATGTATGGAGAAAGTTTG 59.527 40.000 9.25 0.00 43.02 2.93
9090 12201 5.888982 AGTTGGTCCCCACTACTTATATG 57.111 43.478 0.00 0.00 30.78 1.78
9253 12377 4.882671 ATTGCGTATGACCAAATCTCAC 57.117 40.909 0.00 0.00 0.00 3.51
9254 12378 2.627945 TGCGTATGACCAAATCTCACC 58.372 47.619 0.00 0.00 0.00 4.02
9275 12399 4.929808 ACCGAGATATATTGCAACCGATTC 59.070 41.667 0.00 0.00 0.00 2.52
9276 12400 4.929211 CCGAGATATATTGCAACCGATTCA 59.071 41.667 0.00 0.00 0.00 2.57
9287 12411 2.805671 CAACCGATTCAGTAGCAACACA 59.194 45.455 0.00 0.00 0.00 3.72
9294 12418 5.446473 CGATTCAGTAGCAACACAAGGAATC 60.446 44.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.827087 ATGGCCAGCAGCTCGTCG 62.827 66.667 13.05 0.00 43.05 5.12
38 39 3.200593 CATGGCCAGCAGCTCGTC 61.201 66.667 13.05 0.00 43.05 4.20
39 40 4.790962 CCATGGCCAGCAGCTCGT 62.791 66.667 13.05 0.00 43.05 4.18
40 41 4.478371 TCCATGGCCAGCAGCTCG 62.478 66.667 13.05 0.00 43.05 5.03
41 42 2.827642 GTCCATGGCCAGCAGCTC 60.828 66.667 13.05 0.00 43.05 4.09
42 43 2.992576 ATGTCCATGGCCAGCAGCT 61.993 57.895 13.05 0.00 43.05 4.24
43 44 2.441532 ATGTCCATGGCCAGCAGC 60.442 61.111 13.05 2.10 42.60 5.25
44 45 1.077285 TCATGTCCATGGCCAGCAG 60.077 57.895 13.05 3.28 39.24 4.24
45 46 1.077285 CTCATGTCCATGGCCAGCA 60.077 57.895 13.05 8.10 39.24 4.41
46 47 2.487532 GCTCATGTCCATGGCCAGC 61.488 63.158 13.05 0.98 39.24 4.85
47 48 0.681887 TTGCTCATGTCCATGGCCAG 60.682 55.000 13.05 3.10 39.24 4.85
48 49 0.681887 CTTGCTCATGTCCATGGCCA 60.682 55.000 8.56 8.56 39.24 5.36
49 50 0.394762 TCTTGCTCATGTCCATGGCC 60.395 55.000 6.96 0.00 39.24 5.36
50 51 1.133790 GTTCTTGCTCATGTCCATGGC 59.866 52.381 6.96 2.72 39.24 4.40
51 52 2.681848 GAGTTCTTGCTCATGTCCATGG 59.318 50.000 4.97 4.97 39.24 3.66
52 53 3.607741 AGAGTTCTTGCTCATGTCCATG 58.392 45.455 0.71 0.71 37.94 3.66
53 54 3.518705 AGAGAGTTCTTGCTCATGTCCAT 59.481 43.478 0.00 0.00 37.94 3.41
54 55 2.902486 AGAGAGTTCTTGCTCATGTCCA 59.098 45.455 0.00 0.00 37.94 4.02
55 56 3.608316 AGAGAGTTCTTGCTCATGTCC 57.392 47.619 0.00 0.00 37.94 4.02
56 57 4.867608 GGTTAGAGAGTTCTTGCTCATGTC 59.132 45.833 0.00 0.00 37.94 3.06
57 58 4.619394 CGGTTAGAGAGTTCTTGCTCATGT 60.619 45.833 0.00 0.00 37.94 3.21
58 59 3.862267 CGGTTAGAGAGTTCTTGCTCATG 59.138 47.826 0.00 0.00 37.94 3.07
59 60 3.118956 CCGGTTAGAGAGTTCTTGCTCAT 60.119 47.826 0.00 0.00 37.94 2.90
60 61 2.231478 CCGGTTAGAGAGTTCTTGCTCA 59.769 50.000 0.00 0.00 37.94 4.26
61 62 2.417515 CCCGGTTAGAGAGTTCTTGCTC 60.418 54.545 0.00 0.00 34.79 4.26
62 63 1.550976 CCCGGTTAGAGAGTTCTTGCT 59.449 52.381 0.00 0.00 34.79 3.91
63 64 1.275573 ACCCGGTTAGAGAGTTCTTGC 59.724 52.381 0.00 0.00 34.79 4.01
64 65 2.826725 AGACCCGGTTAGAGAGTTCTTG 59.173 50.000 0.00 0.00 34.79 3.02
65 66 3.090790 GAGACCCGGTTAGAGAGTTCTT 58.909 50.000 0.00 0.00 34.79 2.52
66 67 2.309458 AGAGACCCGGTTAGAGAGTTCT 59.691 50.000 0.00 0.00 37.46 3.01
67 68 2.424246 CAGAGACCCGGTTAGAGAGTTC 59.576 54.545 0.00 0.00 0.00 3.01
68 69 2.448453 CAGAGACCCGGTTAGAGAGTT 58.552 52.381 0.00 0.00 0.00 3.01
69 70 1.956159 GCAGAGACCCGGTTAGAGAGT 60.956 57.143 0.00 0.00 0.00 3.24
70 71 0.741915 GCAGAGACCCGGTTAGAGAG 59.258 60.000 0.00 0.00 0.00 3.20
71 72 0.683504 GGCAGAGACCCGGTTAGAGA 60.684 60.000 0.00 0.00 0.00 3.10
72 73 0.684805 AGGCAGAGACCCGGTTAGAG 60.685 60.000 0.00 0.00 0.00 2.43
73 74 0.683504 GAGGCAGAGACCCGGTTAGA 60.684 60.000 0.00 0.00 0.00 2.10
74 75 1.677637 GGAGGCAGAGACCCGGTTAG 61.678 65.000 0.00 0.00 0.00 2.34
75 76 1.684734 GGAGGCAGAGACCCGGTTA 60.685 63.158 0.00 0.00 0.00 2.85
76 77 3.003763 GGAGGCAGAGACCCGGTT 61.004 66.667 0.00 0.00 0.00 4.44
79 80 3.827898 GACGGAGGCAGAGACCCG 61.828 72.222 0.00 0.00 46.65 5.28
80 81 3.827898 CGACGGAGGCAGAGACCC 61.828 72.222 0.00 0.00 0.00 4.46
81 82 4.500116 GCGACGGAGGCAGAGACC 62.500 72.222 0.00 0.00 0.00 3.85
82 83 2.054140 CTAGCGACGGAGGCAGAGAC 62.054 65.000 0.00 0.00 0.00 3.36
83 84 1.820056 CTAGCGACGGAGGCAGAGA 60.820 63.158 0.00 0.00 0.00 3.10
84 85 2.718731 CTAGCGACGGAGGCAGAG 59.281 66.667 0.00 0.00 0.00 3.35
85 86 2.829003 CCTAGCGACGGAGGCAGA 60.829 66.667 0.00 0.00 0.00 4.26
86 87 3.141488 ACCTAGCGACGGAGGCAG 61.141 66.667 0.00 0.00 36.17 4.85
87 88 3.449227 CACCTAGCGACGGAGGCA 61.449 66.667 0.00 0.00 36.17 4.75
88 89 4.208686 CCACCTAGCGACGGAGGC 62.209 72.222 0.00 0.00 36.17 4.70
89 90 3.528370 CCCACCTAGCGACGGAGG 61.528 72.222 0.00 0.00 38.92 4.30
90 91 4.208686 GCCCACCTAGCGACGGAG 62.209 72.222 0.00 0.00 0.00 4.63
91 92 4.753662 AGCCCACCTAGCGACGGA 62.754 66.667 0.00 0.00 34.64 4.69
92 93 4.208686 GAGCCCACCTAGCGACGG 62.209 72.222 0.00 0.00 34.64 4.79
93 94 2.890847 CTTGAGCCCACCTAGCGACG 62.891 65.000 0.00 0.00 34.64 5.12
94 95 1.153549 CTTGAGCCCACCTAGCGAC 60.154 63.158 0.00 0.00 34.64 5.19
95 96 2.359169 CCTTGAGCCCACCTAGCGA 61.359 63.158 0.00 0.00 34.64 4.93
96 97 2.187946 CCTTGAGCCCACCTAGCG 59.812 66.667 0.00 0.00 34.64 4.26
97 98 2.592308 CCCTTGAGCCCACCTAGC 59.408 66.667 0.00 0.00 0.00 3.42
98 99 3.049080 GCCCCTTGAGCCCACCTAG 62.049 68.421 0.00 0.00 0.00 3.02
99 100 3.015145 GCCCCTTGAGCCCACCTA 61.015 66.667 0.00 0.00 0.00 3.08
101 102 4.748144 CAGCCCCTTGAGCCCACC 62.748 72.222 0.00 0.00 0.00 4.61
104 105 2.499303 TTAAGCAGCCCCTTGAGCCC 62.499 60.000 0.00 0.00 0.00 5.19
105 106 1.000896 TTAAGCAGCCCCTTGAGCC 60.001 57.895 0.00 0.00 0.00 4.70
106 107 0.035056 TCTTAAGCAGCCCCTTGAGC 60.035 55.000 0.00 0.00 30.86 4.26
107 108 2.295885 CATCTTAAGCAGCCCCTTGAG 58.704 52.381 0.00 0.83 31.72 3.02
108 109 1.064463 CCATCTTAAGCAGCCCCTTGA 60.064 52.381 0.00 0.00 0.00 3.02
109 110 1.064463 TCCATCTTAAGCAGCCCCTTG 60.064 52.381 0.00 0.00 0.00 3.61
110 111 1.064389 GTCCATCTTAAGCAGCCCCTT 60.064 52.381 0.00 0.00 0.00 3.95
111 112 0.548510 GTCCATCTTAAGCAGCCCCT 59.451 55.000 0.00 0.00 0.00 4.79
112 113 0.466372 GGTCCATCTTAAGCAGCCCC 60.466 60.000 0.00 0.00 0.00 5.80
113 114 0.548510 AGGTCCATCTTAAGCAGCCC 59.451 55.000 0.00 0.00 0.00 5.19
114 115 1.808133 CGAGGTCCATCTTAAGCAGCC 60.808 57.143 0.00 0.00 0.00 4.85
115 116 1.576356 CGAGGTCCATCTTAAGCAGC 58.424 55.000 0.00 0.00 0.00 5.25
116 117 1.808133 GCCGAGGTCCATCTTAAGCAG 60.808 57.143 0.00 0.00 0.00 4.24
117 118 0.178068 GCCGAGGTCCATCTTAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
118 119 0.178068 TGCCGAGGTCCATCTTAAGC 59.822 55.000 0.00 0.00 0.00 3.09
119 120 2.691409 TTGCCGAGGTCCATCTTAAG 57.309 50.000 0.00 0.00 0.00 1.85
120 121 4.448210 GTTATTGCCGAGGTCCATCTTAA 58.552 43.478 0.00 0.00 0.00 1.85
121 122 3.181458 GGTTATTGCCGAGGTCCATCTTA 60.181 47.826 0.00 0.00 0.00 2.10
122 123 2.421529 GGTTATTGCCGAGGTCCATCTT 60.422 50.000 0.00 0.00 0.00 2.40
123 124 1.141053 GGTTATTGCCGAGGTCCATCT 59.859 52.381 0.00 0.00 0.00 2.90
124 125 1.594331 GGTTATTGCCGAGGTCCATC 58.406 55.000 0.00 0.00 0.00 3.51
125 126 3.800826 GGTTATTGCCGAGGTCCAT 57.199 52.632 0.00 0.00 0.00 3.41
135 136 2.522638 CCGTCGAGGCGGTTATTGC 61.523 63.158 8.12 0.00 46.11 3.56
136 137 3.700961 CCGTCGAGGCGGTTATTG 58.299 61.111 8.12 0.00 46.11 1.90
176 177 4.154347 CGTGAGGCTCTCCAGGCC 62.154 72.222 16.72 0.00 46.80 5.19
177 178 2.948720 AACGTGAGGCTCTCCAGGC 61.949 63.158 16.72 0.00 45.92 4.85
178 179 1.079543 CAACGTGAGGCTCTCCAGG 60.080 63.158 16.72 4.47 33.74 4.45
179 180 1.739562 GCAACGTGAGGCTCTCCAG 60.740 63.158 16.72 6.79 33.74 3.86
180 181 2.210013 AGCAACGTGAGGCTCTCCA 61.210 57.895 16.72 0.00 34.76 3.86
181 182 2.659610 AGCAACGTGAGGCTCTCC 59.340 61.111 16.72 5.40 34.76 3.71
185 186 2.049063 GTCGAGCAACGTGAGGCT 60.049 61.111 9.11 9.11 44.48 4.58
186 187 3.112709 GGTCGAGCAACGTGAGGC 61.113 66.667 10.30 0.00 43.13 4.70
187 188 1.444553 GAGGTCGAGCAACGTGAGG 60.445 63.158 18.15 0.00 43.13 3.86
188 189 1.444553 GGAGGTCGAGCAACGTGAG 60.445 63.158 18.15 0.00 43.13 3.51
189 190 2.649034 GGAGGTCGAGCAACGTGA 59.351 61.111 18.15 0.00 43.13 4.35
190 191 2.805353 CGGAGGTCGAGCAACGTG 60.805 66.667 18.15 3.31 42.43 4.49
203 204 1.226746 GTGAGGTTGTTGTTCCGGAG 58.773 55.000 3.34 0.00 0.00 4.63
204 205 0.179040 GGTGAGGTTGTTGTTCCGGA 60.179 55.000 0.00 0.00 0.00 5.14
205 206 1.503818 CGGTGAGGTTGTTGTTCCGG 61.504 60.000 0.00 0.00 34.05 5.14
206 207 1.503818 CCGGTGAGGTTGTTGTTCCG 61.504 60.000 0.00 0.00 36.85 4.30
207 208 1.792118 GCCGGTGAGGTTGTTGTTCC 61.792 60.000 1.90 0.00 43.70 3.62
208 209 1.652563 GCCGGTGAGGTTGTTGTTC 59.347 57.895 1.90 0.00 43.70 3.18
209 210 2.184167 CGCCGGTGAGGTTGTTGTT 61.184 57.895 10.20 0.00 43.70 2.83
210 211 2.590575 CGCCGGTGAGGTTGTTGT 60.591 61.111 10.20 0.00 43.70 3.32
211 212 3.353836 CCGCCGGTGAGGTTGTTG 61.354 66.667 18.79 0.00 43.70 3.33
212 213 4.636435 CCCGCCGGTGAGGTTGTT 62.636 66.667 18.79 0.00 43.70 2.83
230 231 3.114616 CAGCACGAACTCCGGCAG 61.115 66.667 0.00 0.00 43.93 4.85
231 232 4.680237 CCAGCACGAACTCCGGCA 62.680 66.667 0.00 0.00 43.93 5.69
234 235 3.958147 ATGCCCAGCACGAACTCCG 62.958 63.158 0.00 0.00 43.04 4.63
235 236 2.045926 ATGCCCAGCACGAACTCC 60.046 61.111 0.00 0.00 43.04 3.85
236 237 2.401766 CCATGCCCAGCACGAACTC 61.402 63.158 0.00 0.00 43.04 3.01
237 238 2.360350 CCATGCCCAGCACGAACT 60.360 61.111 0.00 0.00 43.04 3.01
238 239 4.120331 GCCATGCCCAGCACGAAC 62.120 66.667 0.00 0.00 43.04 3.95
263 264 2.183811 CGAGAGCAGCAGGTCCTG 59.816 66.667 15.15 15.15 43.21 3.86
264 265 2.036414 TCGAGAGCAGCAGGTCCT 59.964 61.111 4.52 0.00 43.21 3.85
265 266 2.493973 CTCGAGAGCAGCAGGTCC 59.506 66.667 6.58 0.00 43.21 4.46
287 288 4.785453 GGTTCCTCCCAGCAGCGG 62.785 72.222 0.00 0.00 0.00 5.52
296 297 2.190578 CCGCATCAGGGTTCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
297 298 2.514824 GCCGCATCAGGGTTCCTC 60.515 66.667 0.00 0.00 0.00 3.71
298 299 3.329889 TGCCGCATCAGGGTTCCT 61.330 61.111 0.00 0.00 0.00 3.36
299 300 3.134127 GTGCCGCATCAGGGTTCC 61.134 66.667 0.00 0.00 0.00 3.62
300 301 3.499737 CGTGCCGCATCAGGGTTC 61.500 66.667 0.00 0.00 0.00 3.62
301 302 3.958147 CTCGTGCCGCATCAGGGTT 62.958 63.158 0.00 0.00 0.00 4.11
302 303 4.457496 CTCGTGCCGCATCAGGGT 62.457 66.667 0.00 0.00 0.00 4.34
303 304 3.664025 TTCTCGTGCCGCATCAGGG 62.664 63.158 0.00 0.00 0.00 4.45
304 305 2.125552 TTCTCGTGCCGCATCAGG 60.126 61.111 0.00 0.00 0.00 3.86
305 306 0.529337 ATCTTCTCGTGCCGCATCAG 60.529 55.000 0.00 0.00 0.00 2.90
306 307 0.807275 CATCTTCTCGTGCCGCATCA 60.807 55.000 0.00 0.00 0.00 3.07
307 308 1.493950 CCATCTTCTCGTGCCGCATC 61.494 60.000 0.00 0.00 0.00 3.91
308 309 1.522355 CCATCTTCTCGTGCCGCAT 60.522 57.895 0.00 0.00 0.00 4.73
309 310 2.125552 CCATCTTCTCGTGCCGCA 60.126 61.111 0.00 0.00 0.00 5.69
310 311 3.567797 GCCATCTTCTCGTGCCGC 61.568 66.667 0.00 0.00 0.00 6.53
311 312 3.257561 CGCCATCTTCTCGTGCCG 61.258 66.667 0.00 0.00 0.00 5.69
312 313 1.880340 CTCGCCATCTTCTCGTGCC 60.880 63.158 0.00 0.00 0.00 5.01
313 314 2.520904 GCTCGCCATCTTCTCGTGC 61.521 63.158 0.00 0.00 35.99 5.34
314 315 1.880340 GGCTCGCCATCTTCTCGTG 60.880 63.158 2.41 0.00 35.81 4.35
315 316 2.055042 AGGCTCGCCATCTTCTCGT 61.055 57.895 11.02 0.00 38.92 4.18
316 317 1.591059 CAGGCTCGCCATCTTCTCG 60.591 63.158 11.02 0.00 38.92 4.04
317 318 1.227497 CCAGGCTCGCCATCTTCTC 60.227 63.158 11.02 0.00 38.92 2.87
318 319 2.906458 CCAGGCTCGCCATCTTCT 59.094 61.111 11.02 0.00 38.92 2.85
319 320 2.899339 GCCAGGCTCGCCATCTTC 60.899 66.667 11.02 0.00 38.92 2.87
320 321 4.496336 GGCCAGGCTCGCCATCTT 62.496 66.667 18.86 0.00 46.27 2.40
334 335 4.643387 AACAGGTCCAGCGTGGCC 62.643 66.667 0.00 0.00 37.47 5.36
335 336 3.050275 GAACAGGTCCAGCGTGGC 61.050 66.667 0.00 0.00 37.47 5.01
336 337 1.227823 TTGAACAGGTCCAGCGTGG 60.228 57.895 0.00 0.00 39.43 4.94
337 338 1.831389 CGTTGAACAGGTCCAGCGTG 61.831 60.000 0.00 0.00 38.79 5.34
338 339 1.594293 CGTTGAACAGGTCCAGCGT 60.594 57.895 0.00 0.00 33.41 5.07
339 340 1.557443 GACGTTGAACAGGTCCAGCG 61.557 60.000 0.00 0.00 41.59 5.18
340 341 2.235546 GACGTTGAACAGGTCCAGC 58.764 57.895 0.00 0.00 34.67 4.85
344 345 0.666577 CGAGGGACGTTGAACAGGTC 60.667 60.000 0.00 0.00 39.25 3.85
345 346 1.366366 CGAGGGACGTTGAACAGGT 59.634 57.895 0.00 0.00 37.22 4.00
346 347 2.027625 GCGAGGGACGTTGAACAGG 61.028 63.158 0.00 0.00 44.60 4.00
347 348 1.284982 CTGCGAGGGACGTTGAACAG 61.285 60.000 0.00 0.00 44.60 3.16
348 349 1.300620 CTGCGAGGGACGTTGAACA 60.301 57.895 0.00 0.00 44.60 3.18
349 350 2.027625 CCTGCGAGGGACGTTGAAC 61.028 63.158 0.00 0.00 44.60 3.18
350 351 2.342279 CCTGCGAGGGACGTTGAA 59.658 61.111 0.00 0.00 44.60 2.69
351 352 4.373116 GCCTGCGAGGGACGTTGA 62.373 66.667 0.00 0.00 44.60 3.18
352 353 4.680237 TGCCTGCGAGGGACGTTG 62.680 66.667 0.00 0.00 44.60 4.10
353 354 4.681978 GTGCCTGCGAGGGACGTT 62.682 66.667 10.18 0.00 46.68 3.99
357 358 3.785859 GATGGTGCCTGCGAGGGA 61.786 66.667 4.65 0.00 35.37 4.20
358 359 4.864334 GGATGGTGCCTGCGAGGG 62.864 72.222 4.65 0.00 35.37 4.30
359 360 4.864334 GGGATGGTGCCTGCGAGG 62.864 72.222 0.00 0.00 38.80 4.63
363 364 4.864334 CTCCGGGATGGTGCCTGC 62.864 72.222 0.00 0.00 39.52 4.85
364 365 3.391665 GACTCCGGGATGGTGCCTG 62.392 68.421 0.00 0.00 39.52 4.85
365 366 3.083997 GACTCCGGGATGGTGCCT 61.084 66.667 0.00 0.00 39.52 4.75
366 367 4.176752 GGACTCCGGGATGGTGCC 62.177 72.222 0.00 0.00 39.52 5.01
367 368 2.746375 ATGGACTCCGGGATGGTGC 61.746 63.158 0.00 0.00 39.52 5.01
368 369 1.146930 CATGGACTCCGGGATGGTG 59.853 63.158 0.00 0.00 39.52 4.17
369 370 2.072487 CCATGGACTCCGGGATGGT 61.072 63.158 5.56 0.00 39.52 3.55
370 371 2.072487 ACCATGGACTCCGGGATGG 61.072 63.158 21.47 11.26 41.11 3.51
371 372 1.146930 CACCATGGACTCCGGGATG 59.853 63.158 21.47 0.00 0.00 3.51
372 373 2.072487 CCACCATGGACTCCGGGAT 61.072 63.158 21.47 0.00 40.96 3.85
373 374 2.687200 CCACCATGGACTCCGGGA 60.687 66.667 21.47 0.00 40.96 5.14
374 375 4.489771 GCCACCATGGACTCCGGG 62.490 72.222 21.47 10.48 40.96 5.73
375 376 4.838152 CGCCACCATGGACTCCGG 62.838 72.222 21.47 11.30 40.96 5.14
376 377 3.094062 ATCGCCACCATGGACTCCG 62.094 63.158 21.47 14.80 40.96 4.63
377 378 1.524621 CATCGCCACCATGGACTCC 60.525 63.158 21.47 2.52 40.96 3.85
378 379 2.182842 GCATCGCCACCATGGACTC 61.183 63.158 21.47 5.27 40.96 3.36
379 380 2.124570 GCATCGCCACCATGGACT 60.125 61.111 21.47 0.00 40.96 3.85
392 393 2.676471 AACCGCAACCTGGGCATC 60.676 61.111 0.00 0.00 0.00 3.91
393 394 2.676471 GAACCGCAACCTGGGCAT 60.676 61.111 0.00 0.00 0.00 4.40
394 395 4.966787 GGAACCGCAACCTGGGCA 62.967 66.667 0.00 0.00 0.00 5.36
395 396 4.660938 AGGAACCGCAACCTGGGC 62.661 66.667 0.00 0.00 34.99 5.36
396 397 2.359975 GAGGAACCGCAACCTGGG 60.360 66.667 0.00 0.00 36.57 4.45
397 398 1.073199 AAGAGGAACCGCAACCTGG 59.927 57.895 0.00 0.00 36.57 4.45
398 399 1.856265 GCAAGAGGAACCGCAACCTG 61.856 60.000 0.00 0.00 36.57 4.00
399 400 1.600916 GCAAGAGGAACCGCAACCT 60.601 57.895 0.00 0.00 39.41 3.50
400 401 0.321298 TAGCAAGAGGAACCGCAACC 60.321 55.000 0.00 0.00 0.00 3.77
401 402 1.079503 CTAGCAAGAGGAACCGCAAC 58.920 55.000 0.00 0.00 0.00 4.17
402 403 0.973632 TCTAGCAAGAGGAACCGCAA 59.026 50.000 0.00 0.00 0.00 4.85
403 404 0.246635 GTCTAGCAAGAGGAACCGCA 59.753 55.000 0.00 0.00 30.45 5.69
404 405 0.460459 GGTCTAGCAAGAGGAACCGC 60.460 60.000 0.00 0.00 30.45 5.68
405 406 0.895530 TGGTCTAGCAAGAGGAACCG 59.104 55.000 0.00 0.00 30.45 4.44
406 407 1.623811 TGTGGTCTAGCAAGAGGAACC 59.376 52.381 0.00 0.00 30.45 3.62
407 408 3.067833 GTTGTGGTCTAGCAAGAGGAAC 58.932 50.000 0.00 0.00 30.45 3.62
408 409 2.038557 GGTTGTGGTCTAGCAAGAGGAA 59.961 50.000 0.00 0.00 30.45 3.36
409 410 1.623811 GGTTGTGGTCTAGCAAGAGGA 59.376 52.381 0.00 0.00 30.45 3.71
410 411 1.673033 CGGTTGTGGTCTAGCAAGAGG 60.673 57.143 0.00 0.00 30.45 3.69
411 412 1.714794 CGGTTGTGGTCTAGCAAGAG 58.285 55.000 0.00 0.00 30.45 2.85
412 413 0.320421 GCGGTTGTGGTCTAGCAAGA 60.320 55.000 0.00 0.00 0.00 3.02
413 414 1.298859 GGCGGTTGTGGTCTAGCAAG 61.299 60.000 0.00 0.00 0.00 4.01
414 415 1.302192 GGCGGTTGTGGTCTAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
415 416 2.167398 GAGGCGGTTGTGGTCTAGCA 62.167 60.000 0.00 0.00 0.00 3.49
416 417 1.448013 GAGGCGGTTGTGGTCTAGC 60.448 63.158 0.00 0.00 0.00 3.42
417 418 0.173708 GAGAGGCGGTTGTGGTCTAG 59.826 60.000 0.00 0.00 0.00 2.43
418 419 1.255667 GGAGAGGCGGTTGTGGTCTA 61.256 60.000 0.00 0.00 0.00 2.59
419 420 2.584391 GGAGAGGCGGTTGTGGTCT 61.584 63.158 0.00 0.00 0.00 3.85
420 421 2.047179 GGAGAGGCGGTTGTGGTC 60.047 66.667 0.00 0.00 0.00 4.02
421 422 4.003788 CGGAGAGGCGGTTGTGGT 62.004 66.667 0.00 0.00 0.00 4.16
422 423 4.760047 CCGGAGAGGCGGTTGTGG 62.760 72.222 0.00 0.00 0.00 4.17
444 445 4.752879 TACGAGCTTGGCCGGCAC 62.753 66.667 30.85 18.39 0.00 5.01
445 446 4.451150 CTACGAGCTTGGCCGGCA 62.451 66.667 30.85 12.04 0.00 5.69
448 449 4.796231 ACGCTACGAGCTTGGCCG 62.796 66.667 5.79 7.22 39.60 6.13
449 450 2.434359 AACGCTACGAGCTTGGCC 60.434 61.111 5.79 0.00 39.60 5.36
450 451 2.778679 CAACGCTACGAGCTTGGC 59.221 61.111 5.79 0.00 39.60 4.52
451 452 2.740714 GGCAACGCTACGAGCTTGG 61.741 63.158 5.79 0.00 39.60 3.61
452 453 2.778679 GGCAACGCTACGAGCTTG 59.221 61.111 0.00 0.00 39.60 4.01
464 465 3.499737 CCTCATGTCGCCGGCAAC 61.500 66.667 28.98 20.91 0.00 4.17
471 472 4.451150 TGGGACGCCTCATGTCGC 62.451 66.667 3.55 3.55 46.15 5.19
472 473 2.509336 GTGGGACGCCTCATGTCG 60.509 66.667 0.00 0.00 37.22 4.35
473 474 2.509336 CGTGGGACGCCTCATGTC 60.509 66.667 0.00 0.00 33.65 3.06
474 475 4.082523 CCGTGGGACGCCTCATGT 62.083 66.667 0.00 0.00 40.91 3.21
475 476 4.838152 CCCGTGGGACGCCTCATG 62.838 72.222 0.00 0.00 40.91 3.07
478 479 2.248086 ATTAACCCGTGGGACGCCTC 62.248 60.000 13.01 0.00 40.91 4.70
479 480 1.844544 AATTAACCCGTGGGACGCCT 61.845 55.000 13.01 0.00 40.91 5.52
480 481 1.371337 GAATTAACCCGTGGGACGCC 61.371 60.000 13.01 0.00 40.91 5.68
481 482 0.674269 TGAATTAACCCGTGGGACGC 60.674 55.000 13.01 0.00 40.91 5.19
482 483 2.032680 ATGAATTAACCCGTGGGACG 57.967 50.000 13.01 0.00 42.11 4.79
483 484 6.543100 TGTTTATATGAATTAACCCGTGGGAC 59.457 38.462 13.01 0.00 38.96 4.46
484 485 6.660800 TGTTTATATGAATTAACCCGTGGGA 58.339 36.000 13.01 0.00 38.96 4.37
485 486 6.514376 GCTGTTTATATGAATTAACCCGTGGG 60.514 42.308 2.58 2.58 42.03 4.61
486 487 6.038825 TGCTGTTTATATGAATTAACCCGTGG 59.961 38.462 0.00 0.00 0.00 4.94
487 488 7.022055 TGCTGTTTATATGAATTAACCCGTG 57.978 36.000 0.00 0.00 0.00 4.94
488 489 7.201785 CCTTGCTGTTTATATGAATTAACCCGT 60.202 37.037 0.00 0.00 0.00 5.28
489 490 7.138736 CCTTGCTGTTTATATGAATTAACCCG 58.861 38.462 0.00 0.00 0.00 5.28
490 491 7.433680 CCCTTGCTGTTTATATGAATTAACCC 58.566 38.462 0.00 0.00 0.00 4.11
491 492 7.433680 CCCCTTGCTGTTTATATGAATTAACC 58.566 38.462 0.00 0.00 0.00 2.85
492 493 6.923508 GCCCCTTGCTGTTTATATGAATTAAC 59.076 38.462 0.00 0.00 36.87 2.01
493 494 7.049799 GCCCCTTGCTGTTTATATGAATTAA 57.950 36.000 0.00 0.00 36.87 1.40
494 495 6.648879 GCCCCTTGCTGTTTATATGAATTA 57.351 37.500 0.00 0.00 36.87 1.40
495 496 5.535753 GCCCCTTGCTGTTTATATGAATT 57.464 39.130 0.00 0.00 36.87 2.17
509 510 0.530288 TTTCGCATTTAGCCCCTTGC 59.470 50.000 0.00 0.00 41.38 4.01
510 511 2.231235 ACTTTTCGCATTTAGCCCCTTG 59.769 45.455 0.00 0.00 41.38 3.61
511 512 2.231235 CACTTTTCGCATTTAGCCCCTT 59.769 45.455 0.00 0.00 41.38 3.95
512 513 1.818674 CACTTTTCGCATTTAGCCCCT 59.181 47.619 0.00 0.00 41.38 4.79
513 514 1.735700 GCACTTTTCGCATTTAGCCCC 60.736 52.381 0.00 0.00 41.38 5.80
514 515 1.629013 GCACTTTTCGCATTTAGCCC 58.371 50.000 0.00 0.00 41.38 5.19
515 516 1.259316 CGCACTTTTCGCATTTAGCC 58.741 50.000 0.00 0.00 41.38 3.93
516 517 1.259316 CCGCACTTTTCGCATTTAGC 58.741 50.000 0.00 0.00 40.87 3.09
517 518 1.259316 GCCGCACTTTTCGCATTTAG 58.741 50.000 0.00 0.00 0.00 1.85
518 519 0.453615 CGCCGCACTTTTCGCATTTA 60.454 50.000 0.00 0.00 0.00 1.40
519 520 1.729131 CGCCGCACTTTTCGCATTT 60.729 52.632 0.00 0.00 0.00 2.32
520 521 2.126888 CGCCGCACTTTTCGCATT 60.127 55.556 0.00 0.00 0.00 3.56
521 522 4.759096 GCGCCGCACTTTTCGCAT 62.759 61.111 3.15 0.00 45.99 4.73
524 525 3.711842 TCAGCGCCGCACTTTTCG 61.712 61.111 13.36 0.00 0.00 3.46
525 526 2.127232 GTCAGCGCCGCACTTTTC 60.127 61.111 13.36 0.00 0.00 2.29
526 527 3.660111 GGTCAGCGCCGCACTTTT 61.660 61.111 13.36 0.00 0.00 2.27
551 552 2.439701 CATGTGGAGCCAGCTGGG 60.440 66.667 33.46 15.81 40.85 4.45
552 553 2.439701 CCATGTGGAGCCAGCTGG 60.440 66.667 29.34 29.34 37.39 4.85
553 554 3.138798 GCCATGTGGAGCCAGCTG 61.139 66.667 6.78 6.78 37.39 4.24
554 555 3.336568 AGCCATGTGGAGCCAGCT 61.337 61.111 2.55 0.00 37.39 4.24
555 556 3.138798 CAGCCATGTGGAGCCAGC 61.139 66.667 2.55 0.00 37.39 4.85
556 557 1.303888 AACAGCCATGTGGAGCCAG 60.304 57.895 2.55 0.00 40.39 4.85
557 558 1.604308 CAACAGCCATGTGGAGCCA 60.604 57.895 2.55 0.00 40.39 4.75
558 559 1.181098 AACAACAGCCATGTGGAGCC 61.181 55.000 2.55 0.00 40.39 4.70
559 560 0.038892 CAACAACAGCCATGTGGAGC 60.039 55.000 2.55 0.00 40.39 4.70
560 561 1.608055 TCAACAACAGCCATGTGGAG 58.392 50.000 2.55 0.00 40.39 3.86
561 562 2.291209 ATCAACAACAGCCATGTGGA 57.709 45.000 2.55 0.00 40.39 4.02
562 563 2.296752 TCAATCAACAACAGCCATGTGG 59.703 45.455 0.00 0.00 40.39 4.17
563 564 3.311106 GTCAATCAACAACAGCCATGTG 58.689 45.455 0.00 0.00 40.39 3.21
564 565 2.297033 GGTCAATCAACAACAGCCATGT 59.703 45.455 0.00 0.00 43.15 3.21
565 566 2.353011 GGGTCAATCAACAACAGCCATG 60.353 50.000 0.00 0.00 0.00 3.66
566 567 1.895131 GGGTCAATCAACAACAGCCAT 59.105 47.619 0.00 0.00 0.00 4.40
567 568 1.327303 GGGTCAATCAACAACAGCCA 58.673 50.000 0.00 0.00 0.00 4.75
568 569 1.270550 CTGGGTCAATCAACAACAGCC 59.729 52.381 0.00 0.00 0.00 4.85
569 570 1.270550 CCTGGGTCAATCAACAACAGC 59.729 52.381 0.00 0.00 0.00 4.40
570 571 2.554032 GTCCTGGGTCAATCAACAACAG 59.446 50.000 0.00 0.00 0.00 3.16
571 572 2.582052 GTCCTGGGTCAATCAACAACA 58.418 47.619 0.00 0.00 0.00 3.33
572 573 1.886542 GGTCCTGGGTCAATCAACAAC 59.113 52.381 0.00 0.00 0.00 3.32
573 574 1.496857 TGGTCCTGGGTCAATCAACAA 59.503 47.619 0.00 0.00 0.00 2.83
574 575 1.144691 TGGTCCTGGGTCAATCAACA 58.855 50.000 0.00 0.00 0.00 3.33
575 576 2.286365 TTGGTCCTGGGTCAATCAAC 57.714 50.000 0.00 0.00 0.00 3.18
576 577 3.164268 CATTTGGTCCTGGGTCAATCAA 58.836 45.455 0.00 0.00 0.00 2.57
577 578 2.806434 CATTTGGTCCTGGGTCAATCA 58.194 47.619 0.00 0.00 0.00 2.57
578 579 1.478105 GCATTTGGTCCTGGGTCAATC 59.522 52.381 0.00 0.00 0.00 2.67
579 580 1.560505 GCATTTGGTCCTGGGTCAAT 58.439 50.000 0.00 0.00 0.00 2.57
580 581 0.893270 CGCATTTGGTCCTGGGTCAA 60.893 55.000 0.00 0.00 0.00 3.18
581 582 1.303236 CGCATTTGGTCCTGGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
582 583 2.700773 GCGCATTTGGTCCTGGGTC 61.701 63.158 0.30 0.00 0.00 4.46
583 584 2.676471 GCGCATTTGGTCCTGGGT 60.676 61.111 0.30 0.00 0.00 4.51
584 585 2.676121 TGCGCATTTGGTCCTGGG 60.676 61.111 5.66 0.00 0.00 4.45
585 586 1.597797 ATGTGCGCATTTGGTCCTGG 61.598 55.000 15.91 0.00 29.54 4.45
586 587 0.179156 GATGTGCGCATTTGGTCCTG 60.179 55.000 15.91 0.00 35.07 3.86
587 588 1.315257 GGATGTGCGCATTTGGTCCT 61.315 55.000 15.91 0.00 35.07 3.85
588 589 1.139520 GGATGTGCGCATTTGGTCC 59.860 57.895 15.91 13.17 35.07 4.46
589 590 1.226379 CGGATGTGCGCATTTGGTC 60.226 57.895 15.91 7.62 35.07 4.02
590 591 1.647545 CTCGGATGTGCGCATTTGGT 61.648 55.000 15.91 0.00 35.07 3.67
591 592 1.063006 CTCGGATGTGCGCATTTGG 59.937 57.895 15.91 6.97 35.07 3.28
592 593 0.247814 GTCTCGGATGTGCGCATTTG 60.248 55.000 15.91 10.06 35.07 2.32
593 594 0.673333 TGTCTCGGATGTGCGCATTT 60.673 50.000 15.91 3.48 35.07 2.32
594 595 0.673333 TTGTCTCGGATGTGCGCATT 60.673 50.000 15.91 3.94 35.07 3.56
595 596 1.079197 TTGTCTCGGATGTGCGCAT 60.079 52.632 15.91 13.71 38.18 4.73
596 597 1.737735 CTTGTCTCGGATGTGCGCA 60.738 57.895 5.66 5.66 0.00 6.09
597 598 1.291877 AACTTGTCTCGGATGTGCGC 61.292 55.000 0.00 0.00 0.00 6.09
598 599 1.126846 GAAACTTGTCTCGGATGTGCG 59.873 52.381 0.00 0.00 0.00 5.34
599 600 2.143122 TGAAACTTGTCTCGGATGTGC 58.857 47.619 0.00 0.00 0.00 4.57
600 601 2.738846 CCTGAAACTTGTCTCGGATGTG 59.261 50.000 0.00 0.00 0.00 3.21
601 602 2.632996 TCCTGAAACTTGTCTCGGATGT 59.367 45.455 0.00 0.00 0.00 3.06
602 603 2.996621 GTCCTGAAACTTGTCTCGGATG 59.003 50.000 0.00 0.00 0.00 3.51
603 604 2.028020 GGTCCTGAAACTTGTCTCGGAT 60.028 50.000 0.00 0.00 0.00 4.18
604 605 1.343465 GGTCCTGAAACTTGTCTCGGA 59.657 52.381 0.00 0.00 0.00 4.55
605 606 1.070134 TGGTCCTGAAACTTGTCTCGG 59.930 52.381 0.00 0.00 0.00 4.63
606 607 2.526304 TGGTCCTGAAACTTGTCTCG 57.474 50.000 0.00 0.00 0.00 4.04
607 608 6.877611 TTATTTGGTCCTGAAACTTGTCTC 57.122 37.500 0.00 0.00 0.00 3.36
608 609 6.434340 GGATTATTTGGTCCTGAAACTTGTCT 59.566 38.462 0.00 0.00 0.00 3.41
609 610 6.208599 TGGATTATTTGGTCCTGAAACTTGTC 59.791 38.462 0.00 0.00 35.49 3.18
610 611 6.015434 GTGGATTATTTGGTCCTGAAACTTGT 60.015 38.462 0.00 0.00 35.49 3.16
611 612 6.209391 AGTGGATTATTTGGTCCTGAAACTTG 59.791 38.462 0.00 0.00 35.49 3.16
612 613 6.314917 AGTGGATTATTTGGTCCTGAAACTT 58.685 36.000 0.00 0.00 35.49 2.66
613 614 5.892348 AGTGGATTATTTGGTCCTGAAACT 58.108 37.500 0.00 0.00 35.49 2.66
614 615 6.590234 AAGTGGATTATTTGGTCCTGAAAC 57.410 37.500 0.00 0.00 35.49 2.78
615 616 7.441017 CAAAAGTGGATTATTTGGTCCTGAAA 58.559 34.615 0.00 0.00 35.49 2.69
616 617 6.518200 GCAAAAGTGGATTATTTGGTCCTGAA 60.518 38.462 0.00 0.00 35.21 3.02
617 618 5.047377 GCAAAAGTGGATTATTTGGTCCTGA 60.047 40.000 0.00 0.00 35.21 3.86
618 619 5.170748 GCAAAAGTGGATTATTTGGTCCTG 58.829 41.667 0.00 0.00 35.21 3.86
619 620 4.837860 TGCAAAAGTGGATTATTTGGTCCT 59.162 37.500 0.00 0.00 35.21 3.85
620 621 5.146010 TGCAAAAGTGGATTATTTGGTCC 57.854 39.130 0.00 0.00 35.21 4.46
621 622 6.223120 ACTTGCAAAAGTGGATTATTTGGTC 58.777 36.000 0.00 0.00 35.21 4.02
622 623 6.173427 ACTTGCAAAAGTGGATTATTTGGT 57.827 33.333 0.00 0.00 35.21 3.67
623 624 7.226325 TCAAACTTGCAAAAGTGGATTATTTGG 59.774 33.333 0.00 0.00 35.21 3.28
624 625 8.140677 TCAAACTTGCAAAAGTGGATTATTTG 57.859 30.769 0.00 0.00 37.17 2.32
625 626 7.442062 CCTCAAACTTGCAAAAGTGGATTATTT 59.558 33.333 0.00 0.00 32.47 1.40
626 627 6.930722 CCTCAAACTTGCAAAAGTGGATTATT 59.069 34.615 0.00 0.00 32.47 1.40
627 628 6.267471 TCCTCAAACTTGCAAAAGTGGATTAT 59.733 34.615 0.00 0.00 32.47 1.28
628 629 5.596361 TCCTCAAACTTGCAAAAGTGGATTA 59.404 36.000 0.00 0.00 32.47 1.75
629 630 4.405358 TCCTCAAACTTGCAAAAGTGGATT 59.595 37.500 0.00 0.00 32.47 3.01
630 631 3.960102 TCCTCAAACTTGCAAAAGTGGAT 59.040 39.130 0.00 0.00 32.47 3.41
631 632 3.130340 GTCCTCAAACTTGCAAAAGTGGA 59.870 43.478 0.00 3.96 32.47 4.02
632 633 3.447742 GTCCTCAAACTTGCAAAAGTGG 58.552 45.455 0.00 1.61 32.47 4.00
633 634 3.119173 TGGTCCTCAAACTTGCAAAAGTG 60.119 43.478 0.00 0.00 32.47 3.16
634 635 3.096092 TGGTCCTCAAACTTGCAAAAGT 58.904 40.909 0.00 0.00 33.76 2.66
635 636 3.799281 TGGTCCTCAAACTTGCAAAAG 57.201 42.857 0.00 0.00 0.00 2.27
636 637 4.543590 TTTGGTCCTCAAACTTGCAAAA 57.456 36.364 0.00 0.00 40.14 2.44
645 646 2.421751 TGTTCGGTTTGGTCCTCAAA 57.578 45.000 0.00 0.00 42.50 2.69
646 647 2.294074 CTTGTTCGGTTTGGTCCTCAA 58.706 47.619 0.00 0.00 0.00 3.02
647 648 1.210967 ACTTGTTCGGTTTGGTCCTCA 59.789 47.619 0.00 0.00 0.00 3.86
648 649 1.963172 ACTTGTTCGGTTTGGTCCTC 58.037 50.000 0.00 0.00 0.00 3.71
649 650 2.294979 GAACTTGTTCGGTTTGGTCCT 58.705 47.619 0.00 0.00 0.00 3.85
650 651 2.018515 TGAACTTGTTCGGTTTGGTCC 58.981 47.619 8.68 0.00 0.00 4.46
651 652 3.488553 CCTTGAACTTGTTCGGTTTGGTC 60.489 47.826 8.68 0.00 0.00 4.02
652 653 2.425668 CCTTGAACTTGTTCGGTTTGGT 59.574 45.455 8.68 0.00 0.00 3.67
653 654 2.685897 TCCTTGAACTTGTTCGGTTTGG 59.314 45.455 8.68 6.43 0.00 3.28
654 655 3.488553 GGTCCTTGAACTTGTTCGGTTTG 60.489 47.826 8.68 0.00 0.00 2.93
655 656 2.686405 GGTCCTTGAACTTGTTCGGTTT 59.314 45.455 8.68 0.00 0.00 3.27
656 657 2.092592 AGGTCCTTGAACTTGTTCGGTT 60.093 45.455 8.68 0.00 0.00 4.44
657 658 1.489230 AGGTCCTTGAACTTGTTCGGT 59.511 47.619 8.68 0.00 0.00 4.69
658 659 1.873591 CAGGTCCTTGAACTTGTTCGG 59.126 52.381 8.68 5.35 0.00 4.30
659 660 2.561569 ACAGGTCCTTGAACTTGTTCG 58.438 47.619 8.68 0.00 36.17 3.95
660 661 4.511826 CACTACAGGTCCTTGAACTTGTTC 59.488 45.833 6.56 6.56 39.77 3.18
661 662 4.451900 CACTACAGGTCCTTGAACTTGTT 58.548 43.478 0.00 0.00 39.77 2.83
662 663 3.744530 GCACTACAGGTCCTTGAACTTGT 60.745 47.826 0.00 0.00 41.67 3.16
663 664 2.808543 GCACTACAGGTCCTTGAACTTG 59.191 50.000 0.00 0.00 32.86 3.16
664 665 2.706190 AGCACTACAGGTCCTTGAACTT 59.294 45.455 0.00 0.00 0.00 2.66
665 666 2.330216 AGCACTACAGGTCCTTGAACT 58.670 47.619 0.00 0.00 0.00 3.01
666 667 2.841442 AGCACTACAGGTCCTTGAAC 57.159 50.000 0.00 0.00 0.00 3.18
667 668 5.105064 GGTAATAGCACTACAGGTCCTTGAA 60.105 44.000 0.00 0.00 0.00 2.69
668 669 4.404715 GGTAATAGCACTACAGGTCCTTGA 59.595 45.833 0.00 0.00 0.00 3.02
669 670 4.406003 AGGTAATAGCACTACAGGTCCTTG 59.594 45.833 0.00 0.00 0.00 3.61
670 671 4.621769 AGGTAATAGCACTACAGGTCCTT 58.378 43.478 0.00 0.00 0.00 3.36
671 672 4.216708 GAGGTAATAGCACTACAGGTCCT 58.783 47.826 0.00 0.00 0.00 3.85
672 673 3.958798 TGAGGTAATAGCACTACAGGTCC 59.041 47.826 0.00 0.00 0.00 4.46
673 674 5.793030 ATGAGGTAATAGCACTACAGGTC 57.207 43.478 0.00 0.00 0.00 3.85
674 675 6.374588 ACTATGAGGTAATAGCACTACAGGT 58.625 40.000 0.00 0.00 34.08 4.00
675 676 6.902771 ACTATGAGGTAATAGCACTACAGG 57.097 41.667 0.00 0.00 34.08 4.00
676 677 9.601217 AAAAACTATGAGGTAATAGCACTACAG 57.399 33.333 0.00 0.00 34.08 2.74
741 742 1.578583 ATACGGCTAAACATGCGGAC 58.421 50.000 0.00 0.00 35.26 4.79
813 814 1.467734 ACGTAGTAGCTGACGAACAGG 59.532 52.381 20.21 1.14 43.16 4.00
862 863 1.202758 AGTGATCAAACCAGCGGTTCA 60.203 47.619 12.33 4.99 46.20 3.18
866 867 1.926511 GCCAGTGATCAAACCAGCGG 61.927 60.000 0.00 0.00 0.00 5.52
971 972 2.194889 GGAAAAACGGCGGGGACAA 61.195 57.895 13.24 0.00 0.00 3.18
978 979 1.871039 TCTTCTGAAGGAAAAACGGCG 59.129 47.619 16.83 4.80 33.07 6.46
1015 1016 3.699894 CTCCACCTCCGCAGCAGT 61.700 66.667 0.00 0.00 0.00 4.40
1082 1089 3.710722 CCTGCGGCTTCCTCCTGT 61.711 66.667 0.00 0.00 0.00 4.00
1279 1294 7.715265 AAACTGACCATATTTACGCTCATAG 57.285 36.000 0.00 0.00 0.00 2.23
1422 1439 2.851263 ATGTGTTCGCCCTGACTTTA 57.149 45.000 0.00 0.00 0.00 1.85
1432 1449 5.857822 AGGAGTACTTTTTATGTGTTCGC 57.142 39.130 0.00 0.00 0.00 4.70
1505 1522 6.086095 TCCCTCCGTCCCATAATATAAGAAA 58.914 40.000 0.00 0.00 0.00 2.52
1543 1560 2.543848 GTGAAGAACAATGTCAGCGTGA 59.456 45.455 0.00 0.00 0.00 4.35
1566 1583 9.804758 AGAATAGGTTTATTTTGAGTCTACTCG 57.195 33.333 5.69 0.00 36.43 4.18
1597 1614 5.705609 TTCAACCCATTTCTTTGTAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
1616 1633 3.133691 GAGGATGAACGCATAGCATTCA 58.866 45.455 2.90 2.90 44.46 2.57
1619 1636 2.158914 TGTGAGGATGAACGCATAGCAT 60.159 45.455 0.00 0.00 34.11 3.79
1620 1637 1.206849 TGTGAGGATGAACGCATAGCA 59.793 47.619 0.00 0.00 34.11 3.49
1622 1639 6.311445 GGTAATATGTGAGGATGAACGCATAG 59.689 42.308 0.00 0.00 40.88 2.23
1639 1656 4.855715 TCGGAGCTCAAGAGGTAATATG 57.144 45.455 17.19 0.00 39.57 1.78
1667 1684 9.135189 TGATAATAATTTTGCTGGTAGCTCAAT 57.865 29.630 0.00 0.00 42.97 2.57
1690 1707 9.755122 AGATTGTGAATGGATGATGATTATGAT 57.245 29.630 0.00 0.00 0.00 2.45
1691 1708 9.582648 AAGATTGTGAATGGATGATGATTATGA 57.417 29.630 0.00 0.00 0.00 2.15
1746 1763 9.653287 CTCTGTACAAATCAAAAGTACCATAGA 57.347 33.333 0.00 0.00 37.82 1.98
1823 1840 3.085533 TGCGGTGCTATGGTTGTTAAAT 58.914 40.909 0.00 0.00 0.00 1.40
1883 1900 8.054152 TGCATGCAAGACTTCAGATAAAATTA 57.946 30.769 20.30 0.00 0.00 1.40
1885 1902 6.519679 TGCATGCAAGACTTCAGATAAAAT 57.480 33.333 20.30 0.00 0.00 1.82
1894 1911 8.133627 ACATATCTAAATTGCATGCAAGACTTC 58.866 33.333 34.15 0.00 39.47 3.01
2028 2045 8.620116 AGAGAAGAGAAAAATCAGAAGAAAGG 57.380 34.615 0.00 0.00 0.00 3.11
2053 2070 9.056005 GTGCCATGTAGAATAAATGTTGAGATA 57.944 33.333 0.00 0.00 34.37 1.98
2058 2075 5.360714 AGGGTGCCATGTAGAATAAATGTTG 59.639 40.000 0.00 0.00 34.37 3.33
2149 2166 9.647797 CACTGACAAGTACAATTACTATGGTAA 57.352 33.333 3.96 3.96 37.59 2.85
2178 2195 4.141551 ACCAAACCGAATAATCCCTAGTCC 60.142 45.833 0.00 0.00 0.00 3.85
2194 2211 6.037940 GCCTACTTACAATAGCTAACCAAACC 59.962 42.308 0.00 0.00 0.00 3.27
2230 2247 3.461085 ACCCAAGTCCATATGAAGCTCAT 59.539 43.478 3.65 0.00 40.72 2.90
2248 2265 0.771127 ACCAAAGCTAGCAAGACCCA 59.229 50.000 18.83 0.00 0.00 4.51
2266 2283 3.930634 ACCTAAGTCTACACGAACCAC 57.069 47.619 0.00 0.00 0.00 4.16
2268 2285 5.573337 ATGTACCTAAGTCTACACGAACC 57.427 43.478 0.00 0.00 0.00 3.62
2317 2334 1.931172 GAAACGCGCATTAGCCTCTAA 59.069 47.619 5.73 0.00 37.52 2.10
2340 2357 7.582667 AATCTCATGAATGAAGAATGATGCA 57.417 32.000 0.00 0.00 36.18 3.96
2412 2554 5.532406 ACAAACTAACGTAGACTACACTCCA 59.468 40.000 12.99 0.00 0.00 3.86
2416 2558 7.455331 AAACACAAACTAACGTAGACTACAC 57.545 36.000 12.99 0.00 0.00 2.90
2444 2586 4.538746 TTAAAACCCCTTTATTTGCGGG 57.461 40.909 0.00 0.00 41.71 6.13
2486 2629 8.739039 CAACAACCCAACAAGATATATGAAGAA 58.261 33.333 0.00 0.00 0.00 2.52
2487 2630 8.106462 TCAACAACCCAACAAGATATATGAAGA 58.894 33.333 0.00 0.00 0.00 2.87
2488 2631 8.279970 TCAACAACCCAACAAGATATATGAAG 57.720 34.615 0.00 0.00 0.00 3.02
2521 2664 3.195825 CCACTCTTCCCAGAACGAATACT 59.804 47.826 0.00 0.00 0.00 2.12
2536 2679 3.449018 ACGCATCTAACATCTCCACTCTT 59.551 43.478 0.00 0.00 0.00 2.85
2592 2735 2.769663 TCAAGTAGGTCACACAACCACT 59.230 45.455 0.00 0.00 42.12 4.00
2635 2778 5.868801 AGCATTGTTACAACATTTACATGGC 59.131 36.000 0.00 0.00 38.95 4.40
2638 2781 7.656412 TGTGAGCATTGTTACAACATTTACAT 58.344 30.769 0.00 0.00 38.95 2.29
2705 2849 2.481952 CTGAAACTAGCAAGTGGAGCAC 59.518 50.000 0.00 0.00 35.62 4.40
2732 2876 0.393537 GCAGTGGAATGAGTGGAGGG 60.394 60.000 0.00 0.00 0.00 4.30
2733 2877 0.617413 AGCAGTGGAATGAGTGGAGG 59.383 55.000 0.00 0.00 0.00 4.30
2738 2882 2.499289 CTGACCTAGCAGTGGAATGAGT 59.501 50.000 0.00 0.00 0.00 3.41
3186 3354 2.510906 GTGTGTGTCACTGGGGCT 59.489 61.111 4.27 0.00 43.13 5.19
3193 3361 1.214367 CGTGTAAGGGTGTGTGTCAC 58.786 55.000 0.00 0.00 45.47 3.67
3194 3362 0.825410 ACGTGTAAGGGTGTGTGTCA 59.175 50.000 0.00 0.00 0.00 3.58
3224 3392 1.695290 ATAGGGGGCTATGGGGGTGA 61.695 60.000 0.00 0.00 0.00 4.02
3227 3395 2.616458 GCATAGGGGGCTATGGGGG 61.616 68.421 0.00 0.00 37.67 5.40
3228 3396 1.852157 TGCATAGGGGGCTATGGGG 60.852 63.158 0.00 0.00 37.67 4.96
3250 3418 6.765915 AAACTCCCTAGATTTGAAGCAATC 57.234 37.500 0.00 0.00 0.00 2.67
3271 3439 4.501571 GCGAATGGCTGGAGATACTCTAAA 60.502 45.833 0.00 0.00 39.11 1.85
3278 3446 1.754745 GGGCGAATGGCTGGAGATA 59.245 57.895 0.00 0.00 42.94 1.98
3300 3468 1.453928 GGCGCTATTTCAAGCCCCT 60.454 57.895 7.64 0.00 43.54 4.79
3305 3473 0.652592 CCAGACGGCGCTATTTCAAG 59.347 55.000 6.90 0.00 0.00 3.02
3306 3474 0.742990 CCCAGACGGCGCTATTTCAA 60.743 55.000 6.90 0.00 0.00 2.69
3309 3477 2.189521 CCCCAGACGGCGCTATTT 59.810 61.111 6.90 0.00 0.00 1.40
3317 3485 2.675242 TATGTTGGCCCCCAGACGG 61.675 63.158 0.00 0.00 33.81 4.79
3319 3487 1.451387 CGTATGTTGGCCCCCAGAC 60.451 63.158 0.00 3.10 33.81 3.51
3320 3488 0.986019 ATCGTATGTTGGCCCCCAGA 60.986 55.000 0.00 0.00 33.81 3.86
3323 3491 2.351706 TTTATCGTATGTTGGCCCCC 57.648 50.000 0.00 0.00 0.00 5.40
3328 3496 4.909696 TGCCCATTTTATCGTATGTTGG 57.090 40.909 0.00 0.00 0.00 3.77
3330 3498 4.280677 CCCATGCCCATTTTATCGTATGTT 59.719 41.667 0.00 0.00 0.00 2.71
3332 3500 3.193267 CCCCATGCCCATTTTATCGTATG 59.807 47.826 0.00 0.00 0.00 2.39
3333 3501 3.430453 CCCCATGCCCATTTTATCGTAT 58.570 45.455 0.00 0.00 0.00 3.06
3334 3502 2.489985 CCCCCATGCCCATTTTATCGTA 60.490 50.000 0.00 0.00 0.00 3.43
3335 3503 1.703411 CCCCATGCCCATTTTATCGT 58.297 50.000 0.00 0.00 0.00 3.73
3340 3508 3.082701 CGCCCCCATGCCCATTTT 61.083 61.111 0.00 0.00 0.00 1.82
3555 3818 0.185175 TCTACAGGCTCCTCGGCATA 59.815 55.000 0.00 0.00 41.46 3.14
3600 3923 3.766691 GGAGGCGGCGTGTAGGAA 61.767 66.667 9.37 0.00 0.00 3.36
3836 4248 2.569853 TCCCGTAAAGAAGGAGCATGAA 59.430 45.455 0.00 0.00 0.00 2.57
3902 4347 0.391263 GGCGTTCATTCTTCTCCGGT 60.391 55.000 0.00 0.00 0.00 5.28
4128 4603 2.089980 GAGCACATTGAGGTCAGCAAT 58.910 47.619 8.18 0.00 36.45 3.56
4196 4671 2.204151 CCCTCAACTCCCAGGGGT 60.204 66.667 5.33 0.00 45.39 4.95
4213 4688 3.508840 CATTGAACCTCGCGCCCC 61.509 66.667 0.00 0.00 0.00 5.80
4216 4691 1.897398 AACGACATTGAACCTCGCGC 61.897 55.000 0.00 0.00 0.00 6.86
4236 4734 1.870580 CGTACTTCAACCGCTTCCACA 60.871 52.381 0.00 0.00 0.00 4.17
4327 4857 1.668793 CGCCAGGATCGCATGCATA 60.669 57.895 19.57 5.21 0.00 3.14
4412 4953 2.125147 ATCGGACATGCGGGTGTG 60.125 61.111 0.00 0.00 31.16 3.82
4570 5168 0.033503 TAGTGATGCCCCTCTCGTCA 60.034 55.000 0.00 0.00 0.00 4.35
4588 5191 0.335361 AACCCCTTCTCCTCTCGCTA 59.665 55.000 0.00 0.00 0.00 4.26
4589 5192 1.079438 AACCCCTTCTCCTCTCGCT 59.921 57.895 0.00 0.00 0.00 4.93
4631 5279 3.547787 AAGTCACCCTCCCTCGCCT 62.548 63.158 0.00 0.00 0.00 5.52
4715 5369 4.695993 TGAAGGCGCCGATGCACA 62.696 61.111 23.20 12.94 37.32 4.57
4717 5372 4.393155 AGTGAAGGCGCCGATGCA 62.393 61.111 23.20 14.95 37.32 3.96
4810 5482 2.369629 CGCGTTCGTCGTCCACATT 61.370 57.895 0.00 0.00 42.13 2.71
4929 5635 2.126110 GCCAAATTTGACGCCGGG 60.126 61.111 19.86 1.89 0.00 5.73
4943 5650 1.418637 ACTTTTCGTCAGTTAGGGCCA 59.581 47.619 6.18 0.00 0.00 5.36
5067 5784 6.503924 ACCCAGGCAACCTTATGTATATATCA 59.496 38.462 0.00 0.00 37.17 2.15
5074 5791 3.818295 AAACCCAGGCAACCTTATGTA 57.182 42.857 0.00 0.00 37.17 2.29
5077 5794 2.970987 ACAAAACCCAGGCAACCTTAT 58.029 42.857 0.00 0.00 37.17 1.73
5079 5796 2.036387 GTACAAAACCCAGGCAACCTT 58.964 47.619 0.00 0.00 37.17 3.50
5090 5807 4.873827 TGTCTCAACTCACTGTACAAAACC 59.126 41.667 0.00 0.00 0.00 3.27
5100 5924 8.908786 TTTTATTCTCAATGTCTCAACTCACT 57.091 30.769 0.00 0.00 0.00 3.41
5286 6110 1.134946 GAGCGCCAAATTTGCTACCAT 59.865 47.619 12.92 0.00 39.49 3.55
5475 6414 4.864704 AAAAGTTTTGACCGTGGCATAT 57.135 36.364 0.00 0.00 0.00 1.78
5491 6430 4.280929 GGTGAAACAGGGCTGATAAAAAGT 59.719 41.667 0.00 0.00 39.98 2.66
5558 6500 1.075698 TGGAAATTAACGGGAGGCCAA 59.924 47.619 5.01 0.00 0.00 4.52
5637 6579 2.355716 GCACATAGTTCCTTGGTGGCTA 60.356 50.000 0.00 0.00 35.26 3.93
5676 6618 1.742308 AGGAAGCTAGGGGTGTTTGA 58.258 50.000 0.00 0.00 0.00 2.69
5832 8723 7.119846 GTGTCATTCTTTGATACCTAAAGTGCT 59.880 37.037 0.00 0.00 39.76 4.40
5871 8762 5.486735 TTGCTTCAAATTGGATGTGGAAT 57.513 34.783 0.00 0.00 0.00 3.01
6018 8932 5.694458 CCAAGTTTTGTTGTGGTAATAAGCC 59.306 40.000 0.00 0.00 0.00 4.35
6042 8956 7.656707 AAATAAATTTCCTGTGTTGATGCAC 57.343 32.000 0.00 0.00 39.65 4.57
6173 9090 5.105635 TCGTGAATTAGACTACGGGAAATGT 60.106 40.000 0.00 0.00 37.18 2.71
6192 9109 6.017026 TGTTGTAGCACCAAATAAATTCGTGA 60.017 34.615 6.93 0.00 0.00 4.35
6291 9208 5.185454 TGGACTATTGCAATGTTCACCTAG 58.815 41.667 22.27 10.76 0.00 3.02
6430 9347 8.687242 AGCTATTTAGGCCTTTTTGACTATTTC 58.313 33.333 12.58 0.00 0.00 2.17
6484 9401 6.891908 AGTCATAGAAAACACCAAGGCAATAT 59.108 34.615 0.00 0.00 0.00 1.28
6566 9483 9.630098 ATGATAATTGACAACAACATGAAGAAC 57.370 29.630 0.00 0.00 38.90 3.01
6646 9563 2.086610 AACTTGGGCAATTCCAGTGT 57.913 45.000 0.00 0.00 38.17 3.55
6711 9628 8.671921 CAACAACTCTTGCTGACTTATATCATT 58.328 33.333 0.00 0.00 0.00 2.57
6713 9630 6.092670 GCAACAACTCTTGCTGACTTATATCA 59.907 38.462 0.00 0.00 42.84 2.15
6839 9756 4.207955 TGTGATACTTCCACTCTCGCTAT 58.792 43.478 0.00 0.00 35.66 2.97
6844 9761 4.883083 TGTGTTGTGATACTTCCACTCTC 58.117 43.478 0.00 0.00 35.66 3.20
6846 9763 4.631813 GGATGTGTTGTGATACTTCCACTC 59.368 45.833 0.00 0.00 39.51 3.51
6981 9898 5.941788 ACAGGTCCTTGAACTTGTTAGATT 58.058 37.500 0.00 0.00 36.17 2.40
6995 9912 2.158050 ACCCCTAGTTGTACAGGTCCTT 60.158 50.000 0.00 0.00 0.00 3.36
7102 10020 3.327626 TCGCAAGCGACTTGGTAAATAA 58.672 40.909 13.74 0.00 44.01 1.40
7206 10126 6.585702 TCCATCTGTAAACAAATTTCATTGCG 59.414 34.615 0.00 0.00 33.52 4.85
7212 10132 9.612620 CAAGTACTCCATCTGTAAACAAATTTC 57.387 33.333 0.00 0.00 0.00 2.17
7214 10134 7.448469 AGCAAGTACTCCATCTGTAAACAAATT 59.552 33.333 0.00 0.00 0.00 1.82
7258 10178 7.064134 GCAAAATGGCTTACTTTTACCAATACC 59.936 37.037 0.00 0.00 35.41 2.73
7327 10268 3.801293 TGTTTTTGTATGTCTAACGCGC 58.199 40.909 5.73 0.00 0.00 6.86
7415 10523 6.239036 GCACCTTTGTTAAGAAACCTGAGAAT 60.239 38.462 0.00 0.00 34.49 2.40
7544 10652 7.450074 ACGATGCCAGATATACAAATAGGAAA 58.550 34.615 0.00 0.00 0.00 3.13
7577 10685 4.380444 GGTGTATTGTTGAACCAATGCGAT 60.380 41.667 0.00 0.00 39.43 4.58
7582 10690 4.218417 GCAGAGGTGTATTGTTGAACCAAT 59.782 41.667 0.00 0.00 38.54 3.16
7775 10883 6.777213 TCCTATACCTTGTCTCTGAAGAAC 57.223 41.667 0.00 0.00 31.93 3.01
7789 10897 5.310857 GGGAGAAATCACCAATCCTATACCT 59.689 44.000 0.00 0.00 0.00 3.08
8056 11164 4.782156 TGTTTGTGATGTTTGTCATAGCG 58.218 39.130 0.00 0.00 36.83 4.26
8077 11185 3.182967 GGCATCTCTCGTAGTCACTTTG 58.817 50.000 0.00 0.00 0.00 2.77
8097 11205 2.503061 CGATCCAGCCTCTGTGGG 59.497 66.667 0.00 0.00 35.58 4.61
8168 11276 4.353383 AGAAAAGGTTCAGTACTCCCAC 57.647 45.455 0.00 0.00 36.09 4.61
8339 11447 5.297547 CAAAGTATATACTGTGTGCGGGAT 58.702 41.667 20.84 0.00 36.90 3.85
8415 11523 7.168637 CACTTGTTCTTCATCACATTCAAAAGG 59.831 37.037 0.00 0.00 0.00 3.11
8480 11589 7.441458 AGACGTTTTAGCTCTTTGTTGATACTT 59.559 33.333 0.00 0.00 0.00 2.24
8502 11611 9.270576 CTTCATCAAATTGAAATACAGAAGACG 57.729 33.333 0.00 0.00 35.31 4.18
8600 11709 9.686683 AAATAACAGACTTAATAGCTTCACCAT 57.313 29.630 0.00 0.00 0.00 3.55
8658 11769 9.764363 GAACATCCATACATGAAGATGTACTAA 57.236 33.333 18.10 0.00 46.48 2.24
8737 11848 8.988934 TCAGTGAACTGTTTCAAACATATACTC 58.011 33.333 2.71 0.00 43.52 2.59
8854 11965 5.136828 ACAAATCAACTATGTGTGGACCAA 58.863 37.500 0.00 0.00 34.53 3.67
8875 11986 5.475564 GGGCCTAAAACAGTTAGATGAAACA 59.524 40.000 0.84 0.00 0.00 2.83
9001 12112 8.851541 TGATAATGTGACATGTGTGCATATAT 57.148 30.769 1.15 5.89 33.30 0.86
9002 12113 8.674263 TTGATAATGTGACATGTGTGCATATA 57.326 30.769 1.15 0.00 33.30 0.86
9016 12127 3.953612 GTGATGGGCCTTTGATAATGTGA 59.046 43.478 4.53 0.00 0.00 3.58
9090 12201 5.180117 GTGGGATGTGTGCATATTGAGATAC 59.820 44.000 0.00 0.00 35.07 2.24
9253 12377 4.929211 TGAATCGGTTGCAATATATCTCGG 59.071 41.667 0.59 0.00 0.00 4.63
9254 12378 5.635280 ACTGAATCGGTTGCAATATATCTCG 59.365 40.000 0.59 0.00 0.00 4.04
9275 12399 6.992063 AATAGATTCCTTGTGTTGCTACTG 57.008 37.500 0.00 0.00 0.00 2.74
9276 12400 7.620880 TGTAATAGATTCCTTGTGTTGCTACT 58.379 34.615 0.00 0.00 0.00 2.57
9294 12418 7.987458 ACCCTCAACATGATTACACTGTAATAG 59.013 37.037 13.39 9.61 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.