AutoCloner

Multiple sequence alignment - TraesCS3A01G418200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G418200	chr3A	100.000	2357	0	0	1	2357	660196608	660198964	0.000000e+00	4353.0
1	TraesCS3A01G418200	chr1D	96.111	1337	47	4	640	1973	60171805	60170471	0.000000e+00	2176.0
2	TraesCS3A01G418200	chr1D	95.220	1339	56	6	640	1973	247505748	247504413	0.000000e+00	2111.0
3	TraesCS3A01G418200	chr1D	95.335	1329	53	6	640	1965	205134687	205133365	0.000000e+00	2102.0
4	TraesCS3A01G418200	chr1D	96.875	32	1	0	431	462	203534914	203534883	1.000000e-03	54.7
5	TraesCS3A01G418200	chr2D	95.952	1334	50	3	640	1970	73126862	73125530	0.000000e+00	2161.0
6	TraesCS3A01G418200	chr2D	95.516	1338	53	7	640	1973	621748812	621750146	0.000000e+00	2132.0
7	TraesCS3A01G418200	chr7D	95.937	1329	50	3	640	1966	497560917	497562243	0.000000e+00	2152.0
8	TraesCS3A01G418200	chr7D	94.948	1346	63	4	631	1973	50081829	50080486	0.000000e+00	2104.0
9	TraesCS3A01G418200	chr3D	95.799	1333	52	3	640	1969	584701382	584700051	0.000000e+00	2148.0
10	TraesCS3A01G418200	chr3D	87.926	646	35	17	1	624	525917171	525916547	0.000000e+00	721.0
11	TraesCS3A01G418200	chr3D	83.110	373	36	4	1988	2357	525916543	525916195	4.890000e-82	315.0
12	TraesCS3A01G418200	chr6D	94.989	1337	61	5	640	1973	28035032	28033699	0.000000e+00	2093.0
13	TraesCS3A01G418200	chr3B	87.311	528	38	10	1	513	694264123	694264636	5.650000e-161	577.0
14	TraesCS3A01G418200	chr3B	89.757	371	35	3	1988	2357	694267115	694267483	2.740000e-129	472.0
15	TraesCS3A01G418200	chr2B	84.711	242	18	10	103	326	158889790	158889550	8.480000e-55	224.0
16	TraesCS3A01G418200	chr7B	84.519	239	18	10	103	323	637621014	637621251	3.940000e-53	219.0
17	TraesCS3A01G418200	chr1A	96.875	32	1	0	431	462	258179430	258179399	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G418200	chr3A	660196608	660198964	2356	False	4353.0	4353	100.000	1	2357	1	chr3A.!!$F1	2356
1	TraesCS3A01G418200	chr1D	60170471	60171805	1334	True	2176.0	2176	96.111	640	1973	1	chr1D.!!$R1	1333
2	TraesCS3A01G418200	chr1D	247504413	247505748	1335	True	2111.0	2111	95.220	640	1973	1	chr1D.!!$R4	1333
3	TraesCS3A01G418200	chr1D	205133365	205134687	1322	True	2102.0	2102	95.335	640	1965	1	chr1D.!!$R3	1325
4	TraesCS3A01G418200	chr2D	73125530	73126862	1332	True	2161.0	2161	95.952	640	1970	1	chr2D.!!$R1	1330
5	TraesCS3A01G418200	chr2D	621748812	621750146	1334	False	2132.0	2132	95.516	640	1973	1	chr2D.!!$F1	1333
6	TraesCS3A01G418200	chr7D	497560917	497562243	1326	False	2152.0	2152	95.937	640	1966	1	chr7D.!!$F1	1326
7	TraesCS3A01G418200	chr7D	50080486	50081829	1343	True	2104.0	2104	94.948	631	1973	1	chr7D.!!$R1	1342
8	TraesCS3A01G418200	chr3D	584700051	584701382	1331	True	2148.0	2148	95.799	640	1969	1	chr3D.!!$R1	1329
9	TraesCS3A01G418200	chr3D	525916195	525917171	976	True	518.0	721	85.518	1	2357	2	chr3D.!!$R2	2356
10	TraesCS3A01G418200	chr6D	28033699	28035032	1333	True	2093.0	2093	94.989	640	1973	1	chr6D.!!$R1	1333
11	TraesCS3A01G418200	chr3B	694264123	694267483	3360	False	524.5	577	88.534	1	2357	2	chr3B.!!$F1	2356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
154	155	0.036732	ACATCTGGTCGCAACACCAT	59.963	50.0	0.0	0.0	45.76	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1762	4158	0.179056	CATAGGAACGCCGGGTGAAT	60.179	55.0	15.77	2.2	39.96	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.593134	GCGAGGAGCGATGACATGC	61.593	63.158	0.00	0.00	44.57	4.06
89	90	1.375326	GACTCTGTGGTGTTCCCCC	59.625	63.158	0.00	0.00	0.00	5.40
103	104	3.096852	GTTCCCCCACTTTGAATTAGGG	58.903	50.000	0.00	0.00	39.29	3.53
110	111	3.214328	CACTTTGAATTAGGGGGATCCG	58.786	50.000	5.45	0.00	41.52	4.18
112	113	0.476771	TTGAATTAGGGGGATCCGGC	59.523	55.000	5.45	0.00	41.52	6.13
154	155	0.036732	ACATCTGGTCGCAACACCAT	59.963	50.000	0.00	0.00	45.76	3.55
161	162	2.147958	GGTCGCAACACCATTACTGAA	58.852	47.619	0.00	0.00	36.32	3.02
162	163	2.550606	GGTCGCAACACCATTACTGAAA	59.449	45.455	0.00	0.00	36.32	2.69
163	164	3.551551	GTCGCAACACCATTACTGAAAC	58.448	45.455	0.00	0.00	0.00	2.78
164	165	3.250040	GTCGCAACACCATTACTGAAACT	59.750	43.478	0.00	0.00	0.00	2.66
165	166	3.880490	TCGCAACACCATTACTGAAACTT	59.120	39.130	0.00	0.00	0.00	2.66
166	167	3.974401	CGCAACACCATTACTGAAACTTG	59.026	43.478	0.00	0.00	0.00	3.16
234	235	9.845305	CTCGATTTTATTAACGACCAGATTTAC	57.155	33.333	0.00	0.00	0.00	2.01
241	248	9.577110	TTATTAACGACCAGATTTACTGTAGTG	57.423	33.333	0.00	0.00	44.40	2.74
316	323	5.942236	TGAATTCTGATATATGCCTCCTTGC	59.058	40.000	7.05	0.00	0.00	4.01
329	350	1.659098	CTCCTTGCACGGTCGAATTAC	59.341	52.381	9.36	0.00	0.00	1.89
349	370	9.574516	GAATTACCATAGGACCATTAGTTTCAT	57.425	33.333	0.00	0.00	0.00	2.57
409	430	5.117355	TGTTTCGGTCAGTCAAGTAGTAG	57.883	43.478	0.00	0.00	0.00	2.57
410	431	4.581824	TGTTTCGGTCAGTCAAGTAGTAGT	59.418	41.667	0.00	0.00	0.00	2.73
411	432	5.764686	TGTTTCGGTCAGTCAAGTAGTAGTA	59.235	40.000	0.00	0.00	0.00	1.82
452	473	6.343703	ACCTATTGGTCTACGGTATTTTCAC	58.656	40.000	0.00	0.00	44.78	3.18
502	523	7.095695	TGTACACAAAAGAAGAAGGAAAAGG	57.904	36.000	0.00	0.00	0.00	3.11
547	2933	8.270744	AGAGCTTATTATCCAATGTCAGTTCTT	58.729	33.333	0.00	0.00	0.00	2.52
567	2953	6.801539	TCTTTGTGACTATCATGGTCAAAC	57.198	37.500	5.24	0.00	43.90	2.93
585	2971	5.928264	GTCAAACTCCAATTGCTATTTTGCT	59.072	36.000	0.00	0.00	0.00	3.91
610	2996	4.334759	GTGCAGTTCATTCTAGATGTGCAT	59.665	41.667	15.30	0.00	38.25	3.96
625	3011	3.093814	TGTGCATCAATCCATTCTTGCT	58.906	40.909	0.00	0.00	0.00	3.91
626	3012	3.129813	TGTGCATCAATCCATTCTTGCTC	59.870	43.478	0.00	0.00	0.00	4.26
627	3013	3.380637	GTGCATCAATCCATTCTTGCTCT	59.619	43.478	0.00	0.00	0.00	4.09
628	3014	4.021229	TGCATCAATCCATTCTTGCTCTT	58.979	39.130	0.00	0.00	0.00	2.85
629	3015	4.097437	TGCATCAATCCATTCTTGCTCTTC	59.903	41.667	0.00	0.00	0.00	2.87
630	3016	4.338682	GCATCAATCCATTCTTGCTCTTCT	59.661	41.667	0.00	0.00	0.00	2.85
631	3017	5.163540	GCATCAATCCATTCTTGCTCTTCTT	60.164	40.000	0.00	0.00	0.00	2.52
632	3018	6.627508	GCATCAATCCATTCTTGCTCTTCTTT	60.628	38.462	0.00	0.00	0.00	2.52
633	3019	6.906157	TCAATCCATTCTTGCTCTTCTTTT	57.094	33.333	0.00	0.00	0.00	2.27
634	3020	8.464404	CATCAATCCATTCTTGCTCTTCTTTTA	58.536	33.333	0.00	0.00	0.00	1.52
635	3021	8.408043	TCAATCCATTCTTGCTCTTCTTTTAA	57.592	30.769	0.00	0.00	0.00	1.52
636	3022	8.859090	TCAATCCATTCTTGCTCTTCTTTTAAA	58.141	29.630	0.00	0.00	0.00	1.52
637	3023	9.480053	CAATCCATTCTTGCTCTTCTTTTAAAA	57.520	29.630	0.00	0.00	0.00	1.52
678	3064	0.676184	GCCTCTGCATCTGGACGATA	59.324	55.000	0.00	0.00	37.47	2.92
689	3075	5.677344	GCATCTGGACGATACATACGATCAT	60.677	44.000	0.00	0.00	34.70	2.45
848	3236	4.016444	ACATCGCACCAAATCCTAACATT	58.984	39.130	0.00	0.00	0.00	2.71
1190	3580	1.842562	CCATCCACAACATCTCTCCCT	59.157	52.381	0.00	0.00	0.00	4.20
1284	3674	5.445069	TCCAGACTGAATTTTGGACTTTCA	58.555	37.500	3.32	0.00	34.90	2.69
1347	3738	0.908180	CCTCCAGGAAGGGTAACGGT	60.908	60.000	0.00	0.00	38.24	4.83
1400	3791	0.536460	GCCGACCAAAGTTTCCTCCA	60.536	55.000	0.00	0.00	0.00	3.86
1413	3804	1.023719	TCCTCCAGTCCCCATCCTAA	58.976	55.000	0.00	0.00	0.00	2.69
1547	3938	1.115467	AGATCTCCAGACGCCGAATT	58.885	50.000	0.00	0.00	0.00	2.17
1548	3939	1.482593	AGATCTCCAGACGCCGAATTT	59.517	47.619	0.00	0.00	0.00	1.82
1629	4020	5.454471	CCGAAGAAAGGATTCAGATGGATCT	60.454	44.000	1.24	0.00	38.06	2.75
1779	4175	1.219664	CATTCACCCGGCGTTCCTA	59.780	57.895	6.01	0.00	0.00	2.94
1876	4272	4.201679	CCGACGGCGCTATGGACA	62.202	66.667	4.27	0.00	35.83	4.02
1904	4302	1.311371	AGGGGGAGAGGAGGAGGAT	60.311	63.158	0.00	0.00	0.00	3.24
1976	4374	2.849646	GAGGGGCGAGGGGCTTAT	60.850	66.667	0.00	0.00	42.94	1.73
1977	4375	2.849646	AGGGGCGAGGGGCTTATC	60.850	66.667	0.00	0.00	42.94	1.75
1978	4376	3.955044	GGGGCGAGGGGCTTATCC	61.955	72.222	0.00	0.00	42.94	2.59
2051	4450	9.338291	CTTTAAATCCCGTTTTAGCTTAAACTC	57.662	33.333	22.01	2.00	36.18	3.01
2065	4464	5.645497	AGCTTAAACTCCTAGCAATTCACAG	59.355	40.000	0.00	0.00	37.37	3.66
2069	4468	4.130286	ACTCCTAGCAATTCACAGTAGC	57.870	45.455	0.00	0.00	0.00	3.58
2082	4481	5.738619	TCACAGTAGCAACCTCATTTCTA	57.261	39.130	0.00	0.00	0.00	2.10
2086	4485	7.173218	TCACAGTAGCAACCTCATTTCTAAAAG	59.827	37.037	0.00	0.00	0.00	2.27
2149	4548	5.604231	TGGATGACTACTTCCATAGCAATCT	59.396	40.000	0.00	0.00	42.70	2.40
2150	4549	6.782494	TGGATGACTACTTCCATAGCAATCTA	59.218	38.462	0.00	0.00	42.70	1.98
2151	4550	7.290014	TGGATGACTACTTCCATAGCAATCTAA	59.710	37.037	0.00	0.00	42.70	2.10
2152	4551	8.150945	GGATGACTACTTCCATAGCAATCTAAA	58.849	37.037	0.00	0.00	39.31	1.85
2172	4571	0.895100	GGGGAAGCAGTTGATGTGCA	60.895	55.000	0.00	0.00	43.82	4.57
2177	4576	4.168760	GGAAGCAGTTGATGTGCAAATAC	58.831	43.478	0.00	0.00	43.82	1.89
2179	4578	4.430137	AGCAGTTGATGTGCAAATACTG	57.570	40.909	13.46	13.46	43.82	2.74
2182	4581	5.473162	AGCAGTTGATGTGCAAATACTGTAA	59.527	36.000	17.38	0.00	43.82	2.41
2188	4587	5.942826	TGATGTGCAAATACTGTAACATCCA	59.057	36.000	19.27	10.09	43.52	3.41
2249	4648	1.470098	CCAACAATCTTGGGAGAAGCG	59.530	52.381	0.00	0.00	35.07	4.68
2254	4653	2.100605	ATCTTGGGAGAAGCGACAAC	57.899	50.000	0.00	0.00	35.07	3.32
2267	4666	2.304761	AGCGACAACCCCAGAAAAGATA	59.695	45.455	0.00	0.00	0.00	1.98
2272	4671	5.626809	CGACAACCCCAGAAAAGATATCTCA	60.627	44.000	5.51	0.00	0.00	3.27
2273	4672	6.332976	ACAACCCCAGAAAAGATATCTCAT	57.667	37.500	5.51	0.00	0.00	2.90
2340	4741	7.164803	ACTCTAAGTGGAAGGATTTTCTTCAG	58.835	38.462	6.88	0.00	43.52	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
89	90	3.214328	CGGATCCCCCTAATTCAAAGTG	58.786	50.000	6.06	0.00	0.00	3.16
103	104	4.137872	TTGTCGTCGCCGGATCCC	62.138	66.667	5.05	0.00	33.95	3.85
105	106	2.158959	CACTTGTCGTCGCCGGATC	61.159	63.158	5.05	0.00	33.95	3.36
110	111	3.112709	GCTCCACTTGTCGTCGCC	61.113	66.667	0.00	0.00	0.00	5.54
112	113	4.655527	AAGCTCCACTTGTCGTCG	57.344	55.556	0.00	0.00	37.17	5.12
144	145	3.896648	AGTTTCAGTAATGGTGTTGCG	57.103	42.857	0.00	0.00	0.00	4.85
145	146	4.976116	GTCAAGTTTCAGTAATGGTGTTGC	59.024	41.667	0.00	0.00	0.00	4.17
154	155	9.778741	AATTGATCAGTAGTCAAGTTTCAGTAA	57.221	29.630	0.00	0.00	38.81	2.24
234	235	4.201792	GCAATCAAGCAGATCACACTACAG	60.202	45.833	0.00	0.00	35.39	2.74
241	248	5.746307	TGATTAGCAATCAAGCAGATCAC	57.254	39.130	8.52	0.00	44.47	3.06
316	323	3.378339	GTCCTATGGTAATTCGACCGTG	58.622	50.000	2.81	0.00	42.99	4.94
358	379	7.710475	TCAAATTTGAGTGAATTCTCCCAAAAC	59.290	33.333	16.91	2.24	33.93	2.43
359	380	7.790027	TCAAATTTGAGTGAATTCTCCCAAAA	58.210	30.769	16.91	10.27	33.93	2.44
360	381	7.358770	TCAAATTTGAGTGAATTCTCCCAAA	57.641	32.000	16.91	16.30	33.93	3.28
369	390	7.710475	ACCGAAACATTTCAAATTTGAGTGAAT	59.290	29.630	28.11	19.97	38.61	2.57
376	397	6.475076	TGACTGACCGAAACATTTCAAATTTG	59.525	34.615	12.15	12.15	37.01	2.32
472	493	8.378172	TCCTTCTTCTTTTGTGTACATGTTAG	57.622	34.615	2.30	0.00	0.00	2.34
476	497	7.649306	CCTTTTCCTTCTTCTTTTGTGTACATG	59.351	37.037	0.00	0.00	0.00	3.21
481	502	6.850752	TTCCTTTTCCTTCTTCTTTTGTGT	57.149	33.333	0.00	0.00	0.00	3.72
539	2925	6.114187	ACCATGATAGTCACAAAGAACTGA	57.886	37.500	0.00	0.00	0.00	3.41
547	2933	5.221823	TGGAGTTTGACCATGATAGTCACAA	60.222	40.000	3.12	0.51	43.70	3.33
567	2953	5.039333	GCACTAGCAAAATAGCAATTGGAG	58.961	41.667	7.72	0.00	41.58	3.86
585	2971	5.111989	GCACATCTAGAATGAACTGCACTA	58.888	41.667	10.74	0.00	0.00	2.74
599	2985	6.669278	CAAGAATGGATTGATGCACATCTAG	58.331	40.000	11.66	0.00	38.60	2.43
610	2996	6.906157	AAAAGAAGAGCAAGAATGGATTGA	57.094	33.333	0.00	0.00	0.00	2.57
654	3040	3.473647	CAGATGCAGAGGCCGGGA	61.474	66.667	2.18	0.00	40.13	5.14
740	3126	2.698855	GCCTAGATGTTGGCTTCAGA	57.301	50.000	8.09	0.00	45.26	3.27
768	3154	0.396695	TCAAGGGGTAGGAGTAGCGG	60.397	60.000	0.00	0.00	0.00	5.52
1284	3674	2.366972	CCTGAACCCCTCCCGGAT	60.367	66.667	0.73	0.00	0.00	4.18
1324	3715	0.976073	TTACCCTTCCTGGAGGCGAG	60.976	60.000	0.00	0.00	38.35	5.03
1375	3766	0.812549	AAACTTTGGTCGGCGTGTTT	59.187	45.000	6.85	7.31	0.00	2.83
1400	3791	0.988678	GGTGGCTTAGGATGGGGACT	60.989	60.000	0.00	0.00	0.00	3.85
1413	3804	1.412453	TACACGGAGGTTTGGTGGCT	61.412	55.000	0.00	0.00	36.02	4.75
1547	3938	0.742990	GGCCACATCGGATCGTTGAA	60.743	55.000	0.00	0.00	36.56	2.69
1548	3939	1.153449	GGCCACATCGGATCGTTGA	60.153	57.895	0.00	0.00	36.56	3.18
1573	3964	2.124736	CGCGGGGTGGTGATGATT	60.125	61.111	0.00	0.00	0.00	2.57
1629	4020	3.928779	GCCGCCGGATCCAGATCA	61.929	66.667	7.68	0.00	39.54	2.92
1762	4158	0.179056	CATAGGAACGCCGGGTGAAT	60.179	55.000	15.77	2.20	39.96	2.57
1779	4175	3.550431	CGGGACAGCGGGATCCAT	61.550	66.667	15.23	0.00	36.65	3.41
1978	4376	2.365582	CATTTACTGGTTCCCCTTCGG	58.634	52.381	0.00	0.00	0.00	4.30
1979	4377	1.743394	GCATTTACTGGTTCCCCTTCG	59.257	52.381	0.00	0.00	0.00	3.79
1980	4378	3.087370	AGCATTTACTGGTTCCCCTTC	57.913	47.619	0.00	0.00	29.07	3.46
1981	4379	3.542969	AAGCATTTACTGGTTCCCCTT	57.457	42.857	0.00	0.00	41.68	3.95
1982	4380	3.165071	CAAAGCATTTACTGGTTCCCCT	58.835	45.455	0.00	0.00	44.60	4.79
1983	4381	2.353704	GCAAAGCATTTACTGGTTCCCC	60.354	50.000	0.00	0.00	44.60	4.81
1984	4382	2.562738	AGCAAAGCATTTACTGGTTCCC	59.437	45.455	0.00	0.00	44.60	3.97
1985	4383	3.942130	AGCAAAGCATTTACTGGTTCC	57.058	42.857	0.00	0.00	44.60	3.62
1986	4384	5.288804	TCAAAGCAAAGCATTTACTGGTTC	58.711	37.500	0.00	0.00	44.60	3.62
1996	4394	2.561419	AGCACAGATCAAAGCAAAGCAT	59.439	40.909	0.00	0.00	0.00	3.79
1999	4397	4.437121	GCTAGAGCACAGATCAAAGCAAAG	60.437	45.833	0.00	0.00	41.59	2.77
2035	4434	6.476243	TTGCTAGGAGTTTAAGCTAAAACG	57.524	37.500	0.00	0.00	42.83	3.60
2051	4450	3.375299	GGTTGCTACTGTGAATTGCTAGG	59.625	47.826	0.00	0.00	0.00	3.02
2065	4464	6.502136	AGCTTTTAGAAATGAGGTTGCTAC	57.498	37.500	0.00	0.00	27.10	3.58
2069	4468	6.159293	GGGAAAGCTTTTAGAAATGAGGTTG	58.841	40.000	14.05	0.00	31.02	3.77
2082	4481	3.973305	TCCAAAGGAATGGGAAAGCTTTT	59.027	39.130	14.05	0.00	41.05	2.27
2086	4485	2.432146	GGATCCAAAGGAATGGGAAAGC	59.568	50.000	6.95	0.00	41.05	3.51
2127	4526	9.202273	CTTTAGATTGCTATGGAAGTAGTCATC	57.798	37.037	0.00	0.00	30.32	2.92
2149	4548	3.420893	CACATCAACTGCTTCCCCTTTA	58.579	45.455	0.00	0.00	0.00	1.85
2150	4549	2.242043	CACATCAACTGCTTCCCCTTT	58.758	47.619	0.00	0.00	0.00	3.11
2151	4550	1.915141	CACATCAACTGCTTCCCCTT	58.085	50.000	0.00	0.00	0.00	3.95
2152	4551	0.610232	GCACATCAACTGCTTCCCCT	60.610	55.000	0.00	0.00	0.00	4.79
2172	4571	8.918202	TTTCTGTCTTGGATGTTACAGTATTT	57.082	30.769	0.00	0.00	40.18	1.40
2177	4576	5.392380	GGCATTTCTGTCTTGGATGTTACAG	60.392	44.000	0.00	0.00	40.54	2.74
2179	4578	4.458989	TGGCATTTCTGTCTTGGATGTTAC	59.541	41.667	0.00	0.00	0.00	2.50
2182	4581	3.159213	TGGCATTTCTGTCTTGGATGT	57.841	42.857	0.00	0.00	0.00	3.06
2188	4587	3.494332	AGAAGCTTGGCATTTCTGTCTT	58.506	40.909	2.10	0.00	30.41	3.01
2249	4648	5.745227	TGAGATATCTTTTCTGGGGTTGTC	58.255	41.667	6.70	0.00	0.00	3.18
2267	4666	7.497595	TGAAAGCACGGTATAAACTATGAGAT	58.502	34.615	0.00	0.00	0.00	2.75
2272	4671	6.317642	TGCAATGAAAGCACGGTATAAACTAT	59.682	34.615	0.00	0.00	37.02	2.12
2273	4672	5.644206	TGCAATGAAAGCACGGTATAAACTA	59.356	36.000	0.00	0.00	37.02	2.24
2281	4680	2.100584	TCTTTTGCAATGAAAGCACGGT	59.899	40.909	0.00	0.00	42.54	4.83
2283	4682	3.061006	GTGTCTTTTGCAATGAAAGCACG	60.061	43.478	0.00	0.00	42.54	5.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.