Multiple sequence alignment - TraesCS3A01G417400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G417400 chr3A 100.000 4798 0 0 1 4798 659625729 659620932 0.000000e+00 8861.0
1 TraesCS3A01G417400 chr3A 97.951 488 10 0 691 1178 401469510 401469023 0.000000e+00 846.0
2 TraesCS3A01G417400 chr3A 83.420 959 112 29 1459 2401 659858087 659857160 0.000000e+00 846.0
3 TraesCS3A01G417400 chr3A 97.746 488 11 0 691 1178 401510454 401509967 0.000000e+00 841.0
4 TraesCS3A01G417400 chr3A 97.131 488 14 0 691 1178 659630572 659630085 0.000000e+00 824.0
5 TraesCS3A01G417400 chr3A 98.077 468 9 0 711 1178 401464202 401463735 0.000000e+00 815.0
6 TraesCS3A01G417400 chr3A 98.077 468 9 0 711 1178 401505142 401504675 0.000000e+00 815.0
7 TraesCS3A01G417400 chr3A 80.349 1089 127 46 2945 3983 659822654 659821603 0.000000e+00 745.0
8 TraesCS3A01G417400 chr3A 97.941 340 5 2 1 340 401505613 401505276 5.350000e-164 588.0
9 TraesCS3A01G417400 chr3A 97.647 340 6 2 1 340 401464673 401464336 2.490000e-162 582.0
10 TraesCS3A01G417400 chr3A 84.065 615 71 13 1791 2401 659803243 659802652 6.970000e-158 568.0
11 TraesCS3A01G417400 chr3A 83.920 398 43 9 3313 3700 659801155 659800769 1.270000e-95 361.0
12 TraesCS3A01G417400 chr3A 87.195 328 20 11 1253 1565 659803562 659803242 2.120000e-93 353.0
13 TraesCS3A01G417400 chr3A 81.505 319 39 5 2945 3249 659801477 659801165 1.330000e-60 244.0
14 TraesCS3A01G417400 chr3A 98.425 127 2 0 510 636 401464336 401464210 1.740000e-54 224.0
15 TraesCS3A01G417400 chr3A 87.879 66 5 3 2658 2720 55482608 55482543 1.850000e-09 75.0
16 TraesCS3A01G417400 chr3A 90.196 51 5 0 4744 4794 730025372 730025322 3.100000e-07 67.6
17 TraesCS3A01G417400 chr3A 90.196 51 5 0 4744 4794 730449546 730449596 3.100000e-07 67.6
18 TraesCS3A01G417400 chr3A 90.196 51 5 0 4744 4794 730450097 730450147 3.100000e-07 67.6
19 TraesCS3A01G417400 chr3B 93.958 3575 154 20 1178 4704 693470173 693466613 0.000000e+00 5349.0
20 TraesCS3A01G417400 chr3B 84.735 904 105 16 2941 3814 693645987 693645087 0.000000e+00 874.0
21 TraesCS3A01G417400 chr3B 83.610 964 111 27 1459 2404 693736964 693736030 0.000000e+00 861.0
22 TraesCS3A01G417400 chr3B 84.223 843 99 21 1441 2274 693647313 693646496 0.000000e+00 789.0
23 TraesCS3A01G417400 chr3B 86.995 569 52 13 1829 2397 693601671 693601125 5.270000e-174 621.0
24 TraesCS3A01G417400 chr3B 82.081 692 88 17 2945 3628 693728929 693728266 4.190000e-155 558.0
25 TraesCS3A01G417400 chr3B 79.474 570 82 19 3313 3862 693598653 693598099 5.860000e-99 372.0
26 TraesCS3A01G417400 chr3B 82.759 319 39 6 2941 3249 693598975 693598663 2.200000e-68 270.0
27 TraesCS3A01G417400 chr3B 86.486 222 17 8 1265 1480 693602266 693602052 1.040000e-56 231.0
28 TraesCS3A01G417400 chr3B 87.209 172 15 4 3695 3859 693726287 693726116 6.340000e-44 189.0
29 TraesCS3A01G417400 chr3B 87.356 174 9 2 1251 1418 693649483 693649317 2.280000e-43 187.0
30 TraesCS3A01G417400 chr3B 85.811 148 13 2 3779 3918 693645042 693644895 2.990000e-32 150.0
31 TraesCS3A01G417400 chr3B 95.652 46 2 0 4058 4103 172008082 172008037 1.850000e-09 75.0
32 TraesCS3A01G417400 chr3D 93.812 3103 112 22 1178 4236 525538592 525535526 0.000000e+00 4593.0
33 TraesCS3A01G417400 chr3D 85.189 925 101 17 2941 3832 525640442 525639521 0.000000e+00 917.0
34 TraesCS3A01G417400 chr3D 82.751 945 105 35 1467 2401 525641746 525640850 0.000000e+00 789.0
35 TraesCS3A01G417400 chr3D 83.548 620 71 12 1791 2401 525634702 525634105 7.020000e-153 551.0
36 TraesCS3A01G417400 chr3D 84.595 383 54 4 4323 4704 133578984 133579362 4.530000e-100 375.0
37 TraesCS3A01G417400 chr3D 84.119 403 44 8 3313 3705 525632647 525632255 5.860000e-99 372.0
38 TraesCS3A01G417400 chr3D 88.110 328 17 10 1253 1565 525635021 525634701 2.110000e-98 370.0
39 TraesCS3A01G417400 chr3D 82.334 317 42 4 2941 3249 525632967 525632657 3.680000e-66 263.0
40 TraesCS3A01G417400 chr3D 82.993 147 14 3 3798 3936 525639454 525639311 6.520000e-24 122.0
41 TraesCS3A01G417400 chr3D 86.842 114 7 4 3757 3862 525632137 525632024 2.350000e-23 121.0
42 TraesCS3A01G417400 chr4B 92.281 583 42 3 4 585 185212983 185212403 0.000000e+00 824.0
43 TraesCS3A01G417400 chr4B 90.317 630 51 10 553 1177 185212305 185211681 0.000000e+00 817.0
44 TraesCS3A01G417400 chr4B 85.789 380 49 3 4326 4704 66780161 66779786 9.680000e-107 398.0
45 TraesCS3A01G417400 chr4B 93.103 145 5 5 773 913 185217724 185217581 1.750000e-49 207.0
46 TraesCS3A01G417400 chr2B 91.980 586 44 3 1 585 132409954 132410537 0.000000e+00 819.0
47 TraesCS3A01G417400 chr2B 87.722 619 66 10 564 1177 132410646 132411259 0.000000e+00 713.0
48 TraesCS3A01G417400 chr2B 88.966 435 40 8 748 1178 132405167 132405597 9.140000e-147 531.0
49 TraesCS3A01G417400 chr2B 82.004 489 66 11 4328 4798 212163196 212163680 3.480000e-106 396.0
50 TraesCS3A01G417400 chr7A 90.273 586 54 3 1 585 438251613 438252196 0.000000e+00 763.0
51 TraesCS3A01G417400 chr7A 85.174 634 73 17 553 1177 438252293 438252914 8.760000e-177 630.0
52 TraesCS3A01G417400 chr7A 83.960 505 60 19 684 1178 438216483 438216976 9.410000e-127 464.0
53 TraesCS3A01G417400 chr5D 87.884 586 67 4 1 585 93845517 93846099 0.000000e+00 686.0
54 TraesCS3A01G417400 chr5D 86.325 117 13 3 553 668 93846197 93846311 1.810000e-24 124.0
55 TraesCS3A01G417400 chr5D 92.000 50 3 1 4064 4112 188826619 188826570 8.620000e-08 69.4
56 TraesCS3A01G417400 chr5B 84.713 628 80 15 564 1184 576544379 576543761 8.830000e-172 614.0
57 TraesCS3A01G417400 chr5B 82.281 491 63 13 4326 4797 580072456 580071971 2.080000e-108 403.0
58 TraesCS3A01G417400 chr5B 78.270 497 82 13 4323 4798 141841929 141842420 3.630000e-76 296.0
59 TraesCS3A01G417400 chr5B 92.000 50 3 1 4064 4112 217907767 217907718 8.620000e-08 69.4
60 TraesCS3A01G417400 chr1B 79.487 624 93 21 564 1178 98929897 98929300 1.240000e-110 411.0
61 TraesCS3A01G417400 chr1B 81.363 499 73 17 690 1178 98937104 98936616 5.820000e-104 388.0
62 TraesCS3A01G417400 chr1B 79.132 484 72 16 4323 4787 216201052 216201525 1.680000e-79 307.0
63 TraesCS3A01G417400 chr4D 82.209 489 62 14 4331 4798 327387040 327387524 9.680000e-107 398.0
64 TraesCS3A01G417400 chr4D 80.214 374 56 6 4432 4787 391425131 391425504 1.020000e-66 265.0
65 TraesCS3A01G417400 chr4D 91.837 49 4 0 4056 4104 440036062 440036014 8.620000e-08 69.4
66 TraesCS3A01G417400 chr7D 81.984 494 61 19 4326 4798 483909741 483909255 1.250000e-105 394.0
67 TraesCS3A01G417400 chr7D 86.380 279 34 4 2675 2950 232354558 232354281 7.800000e-78 302.0
68 TraesCS3A01G417400 chr7D 78.431 306 43 20 551 846 24468335 24468627 1.370000e-40 178.0
69 TraesCS3A01G417400 chr6D 82.099 486 64 18 4323 4789 242322165 242322646 1.250000e-105 394.0
70 TraesCS3A01G417400 chr2D 82.292 480 60 13 4333 4794 370122904 370123376 4.500000e-105 392.0
71 TraesCS3A01G417400 chr2D 87.833 263 26 6 2671 2930 37610172 37610431 2.170000e-78 303.0
72 TraesCS3A01G417400 chr6A 85.637 369 49 3 4332 4700 378031409 378031045 7.530000e-103 385.0
73 TraesCS3A01G417400 chr6A 92.308 52 4 0 4054 4105 607845522 607845471 1.850000e-09 75.0
74 TraesCS3A01G417400 chr5A 80.730 493 70 12 4326 4798 484250932 484250445 1.270000e-95 361.0
75 TraesCS3A01G417400 chr2A 88.393 224 20 4 2686 2903 42472435 42472658 1.020000e-66 265.0
76 TraesCS3A01G417400 chr1A 87.838 148 15 3 595 741 155837246 155837391 2.300000e-38 171.0
77 TraesCS3A01G417400 chr7B 85.526 76 8 3 4064 4137 92560537 92560463 5.150000e-10 76.8
78 TraesCS3A01G417400 chr7B 86.111 72 8 2 4064 4134 92560467 92560537 5.150000e-10 76.8
79 TraesCS3A01G417400 chrUn 90.196 51 5 0 4744 4794 429529682 429529632 3.100000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G417400 chr3A 659620932 659625729 4797 True 8861.000000 8861 100.000000 1 4798 1 chr3A.!!$R4 4797
1 TraesCS3A01G417400 chr3A 659857160 659858087 927 True 846.000000 846 83.420000 1459 2401 1 chr3A.!!$R7 942
2 TraesCS3A01G417400 chr3A 659821603 659822654 1051 True 745.000000 745 80.349000 2945 3983 1 chr3A.!!$R6 1038
3 TraesCS3A01G417400 chr3A 401504675 401505613 938 True 701.500000 815 98.009000 1 1178 2 chr3A.!!$R10 1177
4 TraesCS3A01G417400 chr3A 401463735 401464673 938 True 540.333333 815 98.049667 1 1178 3 chr3A.!!$R9 1177
5 TraesCS3A01G417400 chr3A 659800769 659803562 2793 True 381.500000 568 84.171250 1253 3700 4 chr3A.!!$R11 2447
6 TraesCS3A01G417400 chr3B 693466613 693470173 3560 True 5349.000000 5349 93.958000 1178 4704 1 chr3B.!!$R2 3526
7 TraesCS3A01G417400 chr3B 693736030 693736964 934 True 861.000000 861 83.610000 1459 2404 1 chr3B.!!$R3 945
8 TraesCS3A01G417400 chr3B 693644895 693649483 4588 True 500.000000 874 85.531250 1251 3918 4 chr3B.!!$R5 2667
9 TraesCS3A01G417400 chr3B 693598099 693602266 4167 True 373.500000 621 83.928500 1265 3862 4 chr3B.!!$R4 2597
10 TraesCS3A01G417400 chr3B 693726116 693728929 2813 True 373.500000 558 84.645000 2945 3859 2 chr3B.!!$R6 914
11 TraesCS3A01G417400 chr3D 525535526 525538592 3066 True 4593.000000 4593 93.812000 1178 4236 1 chr3D.!!$R1 3058
12 TraesCS3A01G417400 chr3D 525639311 525641746 2435 True 609.333333 917 83.644333 1467 3936 3 chr3D.!!$R3 2469
13 TraesCS3A01G417400 chr3D 525632024 525635021 2997 True 335.400000 551 84.990600 1253 3862 5 chr3D.!!$R2 2609
14 TraesCS3A01G417400 chr4B 185211681 185212983 1302 True 820.500000 824 91.299000 4 1177 2 chr4B.!!$R3 1173
15 TraesCS3A01G417400 chr2B 132409954 132411259 1305 False 766.000000 819 89.851000 1 1177 2 chr2B.!!$F3 1176
16 TraesCS3A01G417400 chr7A 438251613 438252914 1301 False 696.500000 763 87.723500 1 1177 2 chr7A.!!$F2 1176
17 TraesCS3A01G417400 chr5D 93845517 93846311 794 False 405.000000 686 87.104500 1 668 2 chr5D.!!$F1 667
18 TraesCS3A01G417400 chr5B 576543761 576544379 618 True 614.000000 614 84.713000 564 1184 1 chr5B.!!$R2 620
19 TraesCS3A01G417400 chr1B 98929300 98929897 597 True 411.000000 411 79.487000 564 1178 1 chr1B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 505 0.035056 CGTCAGGCAAAGGGAGGAAT 60.035 55.000 0.00 0.0 0.00 3.01 F
1246 1555 0.179070 GGAGCTCGTCCCCTTTCATC 60.179 60.000 7.83 0.0 39.88 2.92 F
2229 4820 2.149578 CTGGGCTCAGAAGTTTGTCAG 58.850 52.381 8.28 0.0 43.49 3.51 F
3311 8210 0.601841 GGCAAAACGACGAGGAGGAA 60.602 55.000 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 4503 1.077212 CTCCATTGTGCCAGGGAGG 60.077 63.158 12.89 0.0 42.55 4.30 R
2921 7766 1.558756 AGACTTCAAGATGCTCAGGGG 59.441 52.381 0.00 0.0 0.00 4.79 R
3345 8244 0.247736 GCCTCCTCATTGTGTCTCGT 59.752 55.000 0.00 0.0 0.00 4.18 R
4529 11568 0.319469 TCGCAGATGACGTTTGAGCA 60.319 50.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.544917 AGGGGTTTGGAGGCCATCT 60.545 57.895 5.01 0.00 31.53 2.90
339 341 2.425312 TCTGTCCTGCTCTCGATTTCTC 59.575 50.000 0.00 0.00 0.00 2.87
340 342 2.426738 CTGTCCTGCTCTCGATTTCTCT 59.573 50.000 0.00 0.00 0.00 3.10
341 343 2.165234 TGTCCTGCTCTCGATTTCTCTG 59.835 50.000 0.00 0.00 0.00 3.35
342 344 1.135915 TCCTGCTCTCGATTTCTCTGC 59.864 52.381 0.00 0.00 0.00 4.26
343 345 1.134877 CCTGCTCTCGATTTCTCTGCA 60.135 52.381 0.00 0.00 0.00 4.41
344 346 2.195096 CTGCTCTCGATTTCTCTGCAG 58.805 52.381 7.63 7.63 39.98 4.41
345 347 1.547820 TGCTCTCGATTTCTCTGCAGT 59.452 47.619 14.67 0.00 0.00 4.40
346 348 1.925847 GCTCTCGATTTCTCTGCAGTG 59.074 52.381 14.67 11.96 0.00 3.66
347 349 2.673610 GCTCTCGATTTCTCTGCAGTGT 60.674 50.000 14.67 0.00 0.00 3.55
348 350 3.583806 CTCTCGATTTCTCTGCAGTGTT 58.416 45.455 14.67 1.13 0.00 3.32
349 351 3.993081 CTCTCGATTTCTCTGCAGTGTTT 59.007 43.478 14.67 0.76 0.00 2.83
350 352 3.742882 TCTCGATTTCTCTGCAGTGTTTG 59.257 43.478 14.67 5.51 0.00 2.93
351 353 2.807967 TCGATTTCTCTGCAGTGTTTGG 59.192 45.455 14.67 2.88 0.00 3.28
352 354 2.807967 CGATTTCTCTGCAGTGTTTGGA 59.192 45.455 14.67 1.36 0.00 3.53
353 355 3.364366 CGATTTCTCTGCAGTGTTTGGAC 60.364 47.826 14.67 2.72 0.00 4.02
354 356 2.708216 TTCTCTGCAGTGTTTGGACA 57.292 45.000 14.67 0.00 0.00 4.02
355 357 2.936919 TCTCTGCAGTGTTTGGACAT 57.063 45.000 14.67 0.00 38.23 3.06
356 358 2.771089 TCTCTGCAGTGTTTGGACATC 58.229 47.619 14.67 0.00 38.23 3.06
357 359 1.462283 CTCTGCAGTGTTTGGACATCG 59.538 52.381 14.67 0.00 38.23 3.84
358 360 1.069978 TCTGCAGTGTTTGGACATCGA 59.930 47.619 14.67 0.00 38.23 3.59
359 361 1.462283 CTGCAGTGTTTGGACATCGAG 59.538 52.381 5.25 0.00 38.23 4.04
360 362 1.202639 TGCAGTGTTTGGACATCGAGT 60.203 47.619 0.00 0.00 38.23 4.18
361 363 1.873591 GCAGTGTTTGGACATCGAGTT 59.126 47.619 0.00 0.00 38.23 3.01
362 364 2.349817 GCAGTGTTTGGACATCGAGTTG 60.350 50.000 0.00 0.00 38.23 3.16
363 365 2.872245 CAGTGTTTGGACATCGAGTTGT 59.128 45.455 0.00 0.00 38.23 3.32
364 366 4.055360 CAGTGTTTGGACATCGAGTTGTA 58.945 43.478 0.00 0.00 38.23 2.41
365 367 4.509970 CAGTGTTTGGACATCGAGTTGTAA 59.490 41.667 0.00 0.00 38.23 2.41
366 368 4.750098 AGTGTTTGGACATCGAGTTGTAAG 59.250 41.667 0.00 0.00 38.23 2.34
367 369 4.062293 TGTTTGGACATCGAGTTGTAAGG 58.938 43.478 0.00 0.00 0.00 2.69
368 370 4.202274 TGTTTGGACATCGAGTTGTAAGGA 60.202 41.667 0.00 0.00 0.00 3.36
369 371 4.819105 TTGGACATCGAGTTGTAAGGAT 57.181 40.909 0.00 0.00 0.00 3.24
370 372 4.819105 TGGACATCGAGTTGTAAGGATT 57.181 40.909 0.00 0.00 0.00 3.01
371 373 4.503910 TGGACATCGAGTTGTAAGGATTG 58.496 43.478 0.00 0.00 0.00 2.67
372 374 3.309954 GGACATCGAGTTGTAAGGATTGC 59.690 47.826 0.00 0.00 0.00 3.56
373 375 3.932710 GACATCGAGTTGTAAGGATTGCA 59.067 43.478 0.00 0.00 39.50 4.08
374 376 4.517285 ACATCGAGTTGTAAGGATTGCAT 58.483 39.130 0.00 0.00 41.29 3.96
375 377 4.572389 ACATCGAGTTGTAAGGATTGCATC 59.428 41.667 0.00 0.00 41.29 3.91
376 378 4.471904 TCGAGTTGTAAGGATTGCATCT 57.528 40.909 0.00 0.00 41.29 2.90
377 379 4.433615 TCGAGTTGTAAGGATTGCATCTC 58.566 43.478 7.99 7.99 46.92 2.75
379 381 4.517285 GAGTTGTAAGGATTGCATCTCCA 58.483 43.478 15.95 0.00 45.66 3.86
380 382 4.521146 AGTTGTAAGGATTGCATCTCCAG 58.479 43.478 15.95 0.00 41.29 3.86
381 383 3.565764 TGTAAGGATTGCATCTCCAGG 57.434 47.619 15.95 0.00 35.19 4.45
382 384 2.846206 TGTAAGGATTGCATCTCCAGGT 59.154 45.455 15.95 5.61 35.19 4.00
383 385 3.266772 TGTAAGGATTGCATCTCCAGGTT 59.733 43.478 15.95 6.39 35.19 3.50
384 386 2.431954 AGGATTGCATCTCCAGGTTG 57.568 50.000 15.95 0.00 35.08 3.77
385 387 1.637553 AGGATTGCATCTCCAGGTTGT 59.362 47.619 15.95 0.00 35.08 3.32
386 388 2.042162 AGGATTGCATCTCCAGGTTGTT 59.958 45.455 15.95 0.00 35.08 2.83
387 389 2.827921 GGATTGCATCTCCAGGTTGTTT 59.172 45.455 10.23 0.00 32.72 2.83
388 390 3.367703 GGATTGCATCTCCAGGTTGTTTG 60.368 47.826 10.23 0.00 32.72 2.93
389 391 2.363306 TGCATCTCCAGGTTGTTTGT 57.637 45.000 0.00 0.00 0.00 2.83
390 392 1.955778 TGCATCTCCAGGTTGTTTGTG 59.044 47.619 0.00 0.00 0.00 3.33
391 393 1.270550 GCATCTCCAGGTTGTTTGTGG 59.729 52.381 0.00 0.00 0.00 4.17
392 394 2.862541 CATCTCCAGGTTGTTTGTGGA 58.137 47.619 0.00 0.00 38.07 4.02
394 396 3.819245 TCCAGGTTGTTTGTGGAGG 57.181 52.632 0.00 0.00 35.36 4.30
395 397 1.217916 TCCAGGTTGTTTGTGGAGGA 58.782 50.000 0.00 0.00 35.36 3.71
396 398 1.133915 TCCAGGTTGTTTGTGGAGGAC 60.134 52.381 0.00 0.00 35.36 3.85
397 399 0.944386 CAGGTTGTTTGTGGAGGACG 59.056 55.000 0.00 0.00 0.00 4.79
398 400 0.834612 AGGTTGTTTGTGGAGGACGA 59.165 50.000 0.00 0.00 0.00 4.20
399 401 1.210967 AGGTTGTTTGTGGAGGACGAA 59.789 47.619 0.00 0.00 0.00 3.85
400 402 2.158667 AGGTTGTTTGTGGAGGACGAAT 60.159 45.455 0.00 0.00 30.24 3.34
401 403 2.225727 GGTTGTTTGTGGAGGACGAATC 59.774 50.000 0.00 0.00 30.24 2.52
402 404 2.875933 GTTGTTTGTGGAGGACGAATCA 59.124 45.455 0.00 0.00 30.24 2.57
403 405 2.766313 TGTTTGTGGAGGACGAATCAG 58.234 47.619 0.00 0.00 30.24 2.90
404 406 2.367241 TGTTTGTGGAGGACGAATCAGA 59.633 45.455 0.00 0.00 30.24 3.27
405 407 3.007940 TGTTTGTGGAGGACGAATCAGAT 59.992 43.478 0.00 0.00 30.24 2.90
406 408 2.967599 TGTGGAGGACGAATCAGATG 57.032 50.000 0.00 0.00 0.00 2.90
407 409 1.482182 TGTGGAGGACGAATCAGATGG 59.518 52.381 0.00 0.00 0.00 3.51
408 410 1.123077 TGGAGGACGAATCAGATGGG 58.877 55.000 0.00 0.00 0.00 4.00
409 411 0.250081 GGAGGACGAATCAGATGGGC 60.250 60.000 0.00 0.00 0.00 5.36
410 412 0.250081 GAGGACGAATCAGATGGGCC 60.250 60.000 0.00 0.00 0.00 5.80
411 413 0.982852 AGGACGAATCAGATGGGCCA 60.983 55.000 9.61 9.61 0.00 5.36
412 414 0.533755 GGACGAATCAGATGGGCCAG 60.534 60.000 13.78 0.00 0.00 4.85
413 415 0.179000 GACGAATCAGATGGGCCAGT 59.821 55.000 13.78 0.50 0.00 4.00
414 416 0.179000 ACGAATCAGATGGGCCAGTC 59.821 55.000 13.78 10.02 0.00 3.51
415 417 0.178767 CGAATCAGATGGGCCAGTCA 59.821 55.000 13.78 0.00 0.00 3.41
416 418 1.202734 CGAATCAGATGGGCCAGTCAT 60.203 52.381 13.78 0.00 0.00 3.06
417 419 2.502295 GAATCAGATGGGCCAGTCATC 58.498 52.381 13.78 8.84 40.79 2.92
419 421 1.588239 TCAGATGGGCCAGTCATCTT 58.412 50.000 17.49 0.00 46.33 2.40
420 422 1.211212 TCAGATGGGCCAGTCATCTTG 59.789 52.381 17.49 13.59 46.33 3.02
421 423 1.211212 CAGATGGGCCAGTCATCTTGA 59.789 52.381 17.49 0.00 46.33 3.02
422 424 2.133520 AGATGGGCCAGTCATCTTGAT 58.866 47.619 13.78 0.00 46.33 2.57
423 425 2.158652 AGATGGGCCAGTCATCTTGATG 60.159 50.000 13.78 4.35 46.33 3.07
424 426 0.256752 TGGGCCAGTCATCTTGATGG 59.743 55.000 0.00 0.00 32.14 3.51
425 427 0.548031 GGGCCAGTCATCTTGATGGA 59.452 55.000 4.39 0.00 31.23 3.41
426 428 1.476471 GGGCCAGTCATCTTGATGGAG 60.476 57.143 4.39 2.04 31.23 3.86
427 429 1.211457 GGCCAGTCATCTTGATGGAGT 59.789 52.381 10.29 0.00 31.23 3.85
428 430 2.286872 GCCAGTCATCTTGATGGAGTG 58.713 52.381 10.29 9.58 31.23 3.51
429 431 2.093288 GCCAGTCATCTTGATGGAGTGA 60.093 50.000 10.29 0.00 34.63 3.41
430 432 3.529533 CCAGTCATCTTGATGGAGTGAC 58.470 50.000 10.29 2.67 39.47 3.67
431 433 3.185330 CAGTCATCTTGATGGAGTGACG 58.815 50.000 10.29 0.00 42.87 4.35
432 434 1.929836 GTCATCTTGATGGAGTGACGC 59.070 52.381 10.29 0.00 31.15 5.19
433 435 1.550072 TCATCTTGATGGAGTGACGCA 59.450 47.619 10.29 0.00 0.00 5.24
434 436 1.931841 CATCTTGATGGAGTGACGCAG 59.068 52.381 2.86 0.00 0.00 5.18
435 437 1.256812 TCTTGATGGAGTGACGCAGA 58.743 50.000 0.00 0.00 0.00 4.26
436 438 1.203287 TCTTGATGGAGTGACGCAGAG 59.797 52.381 0.00 0.00 0.00 3.35
437 439 1.203287 CTTGATGGAGTGACGCAGAGA 59.797 52.381 0.00 0.00 0.00 3.10
438 440 0.813821 TGATGGAGTGACGCAGAGAG 59.186 55.000 0.00 0.00 0.00 3.20
439 441 0.102120 GATGGAGTGACGCAGAGAGG 59.898 60.000 0.00 0.00 0.00 3.69
440 442 1.326213 ATGGAGTGACGCAGAGAGGG 61.326 60.000 0.00 0.00 0.00 4.30
442 444 1.536943 GGAGTGACGCAGAGAGGGTT 61.537 60.000 0.00 0.00 44.33 4.11
443 445 0.318762 GAGTGACGCAGAGAGGGTTT 59.681 55.000 0.00 0.00 44.33 3.27
444 446 0.759346 AGTGACGCAGAGAGGGTTTT 59.241 50.000 0.00 0.00 44.33 2.43
445 447 1.141053 AGTGACGCAGAGAGGGTTTTT 59.859 47.619 0.00 0.00 44.33 1.94
446 448 2.367567 AGTGACGCAGAGAGGGTTTTTA 59.632 45.455 0.00 0.00 44.33 1.52
447 449 2.737252 GTGACGCAGAGAGGGTTTTTAG 59.263 50.000 0.00 0.00 44.33 1.85
448 450 2.631062 TGACGCAGAGAGGGTTTTTAGA 59.369 45.455 0.00 0.00 44.33 2.10
449 451 3.070446 TGACGCAGAGAGGGTTTTTAGAA 59.930 43.478 0.00 0.00 44.33 2.10
450 452 3.400255 ACGCAGAGAGGGTTTTTAGAAC 58.600 45.455 0.00 0.00 41.09 3.01
451 453 3.071167 ACGCAGAGAGGGTTTTTAGAACT 59.929 43.478 0.00 0.00 41.09 3.01
452 454 3.433615 CGCAGAGAGGGTTTTTAGAACTG 59.566 47.826 0.00 0.00 0.00 3.16
453 455 3.753797 GCAGAGAGGGTTTTTAGAACTGG 59.246 47.826 0.00 0.00 0.00 4.00
454 456 3.753797 CAGAGAGGGTTTTTAGAACTGGC 59.246 47.826 0.00 0.00 0.00 4.85
455 457 3.394606 AGAGAGGGTTTTTAGAACTGGCA 59.605 43.478 0.00 0.00 0.00 4.92
456 458 3.753797 GAGAGGGTTTTTAGAACTGGCAG 59.246 47.826 14.16 14.16 0.00 4.85
457 459 2.820197 GAGGGTTTTTAGAACTGGCAGG 59.180 50.000 20.34 0.58 0.00 4.85
458 460 1.893137 GGGTTTTTAGAACTGGCAGGG 59.107 52.381 20.34 0.00 0.00 4.45
459 461 2.490168 GGGTTTTTAGAACTGGCAGGGA 60.490 50.000 20.34 0.00 0.00 4.20
460 462 2.820197 GGTTTTTAGAACTGGCAGGGAG 59.180 50.000 20.34 0.00 0.00 4.30
461 463 2.200373 TTTTAGAACTGGCAGGGAGC 57.800 50.000 20.34 4.80 44.65 4.70
470 472 3.404773 GCAGGGAGCCAGTAACCT 58.595 61.111 0.00 0.00 37.23 3.50
471 473 1.222113 GCAGGGAGCCAGTAACCTC 59.778 63.158 0.00 0.00 37.23 3.85
472 474 1.553690 GCAGGGAGCCAGTAACCTCA 61.554 60.000 0.00 0.00 37.23 3.86
473 475 0.250513 CAGGGAGCCAGTAACCTCAC 59.749 60.000 0.00 0.00 0.00 3.51
474 476 0.117340 AGGGAGCCAGTAACCTCACT 59.883 55.000 0.00 0.00 37.02 3.41
475 477 0.250513 GGGAGCCAGTAACCTCACTG 59.749 60.000 0.00 0.00 44.60 3.66
476 478 0.391793 GGAGCCAGTAACCTCACTGC 60.392 60.000 0.00 0.00 43.82 4.40
477 479 0.321671 GAGCCAGTAACCTCACTGCA 59.678 55.000 0.00 0.00 43.82 4.41
478 480 0.764890 AGCCAGTAACCTCACTGCAA 59.235 50.000 0.00 0.00 43.82 4.08
479 481 1.160137 GCCAGTAACCTCACTGCAAG 58.840 55.000 0.00 0.00 43.82 4.01
480 482 1.270839 GCCAGTAACCTCACTGCAAGA 60.271 52.381 0.00 0.00 43.82 3.02
481 483 2.693069 CCAGTAACCTCACTGCAAGAG 58.307 52.381 8.49 8.49 43.82 2.85
482 484 2.300152 CCAGTAACCTCACTGCAAGAGA 59.700 50.000 15.42 0.43 43.82 3.10
483 485 3.055530 CCAGTAACCTCACTGCAAGAGAT 60.056 47.826 15.42 7.91 43.82 2.75
484 486 4.180057 CAGTAACCTCACTGCAAGAGATC 58.820 47.826 15.42 0.00 39.54 2.75
485 487 2.376808 AACCTCACTGCAAGAGATCG 57.623 50.000 15.42 3.94 37.43 3.69
486 488 1.261480 ACCTCACTGCAAGAGATCGT 58.739 50.000 15.42 4.47 37.43 3.73
487 489 1.203523 ACCTCACTGCAAGAGATCGTC 59.796 52.381 15.42 0.00 37.43 4.20
488 490 1.203287 CCTCACTGCAAGAGATCGTCA 59.797 52.381 15.42 0.00 37.43 4.35
489 491 2.528125 CTCACTGCAAGAGATCGTCAG 58.472 52.381 9.63 0.00 37.43 3.51
490 492 1.203287 TCACTGCAAGAGATCGTCAGG 59.797 52.381 0.00 0.00 37.43 3.86
491 493 0.108424 ACTGCAAGAGATCGTCAGGC 60.108 55.000 0.00 0.00 37.43 4.85
492 494 0.108472 CTGCAAGAGATCGTCAGGCA 60.108 55.000 0.00 0.00 34.07 4.75
493 495 0.321346 TGCAAGAGATCGTCAGGCAA 59.679 50.000 0.00 0.00 34.60 4.52
494 496 1.270785 TGCAAGAGATCGTCAGGCAAA 60.271 47.619 0.00 0.00 34.60 3.68
495 497 1.396301 GCAAGAGATCGTCAGGCAAAG 59.604 52.381 0.00 0.00 0.00 2.77
496 498 2.005451 CAAGAGATCGTCAGGCAAAGG 58.995 52.381 0.00 0.00 0.00 3.11
497 499 0.539051 AGAGATCGTCAGGCAAAGGG 59.461 55.000 0.00 0.00 0.00 3.95
498 500 0.537188 GAGATCGTCAGGCAAAGGGA 59.463 55.000 0.00 0.00 0.00 4.20
499 501 0.539051 AGATCGTCAGGCAAAGGGAG 59.461 55.000 0.00 0.00 0.00 4.30
500 502 0.462759 GATCGTCAGGCAAAGGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
501 503 0.909610 ATCGTCAGGCAAAGGGAGGA 60.910 55.000 0.00 0.00 0.00 3.71
502 504 1.125093 TCGTCAGGCAAAGGGAGGAA 61.125 55.000 0.00 0.00 0.00 3.36
503 505 0.035056 CGTCAGGCAAAGGGAGGAAT 60.035 55.000 0.00 0.00 0.00 3.01
504 506 1.614317 CGTCAGGCAAAGGGAGGAATT 60.614 52.381 0.00 0.00 0.00 2.17
505 507 2.529632 GTCAGGCAAAGGGAGGAATTT 58.470 47.619 0.00 0.00 0.00 1.82
506 508 2.899900 GTCAGGCAAAGGGAGGAATTTT 59.100 45.455 0.00 0.00 0.00 1.82
507 509 4.086457 GTCAGGCAAAGGGAGGAATTTTA 58.914 43.478 0.00 0.00 0.00 1.52
508 510 4.082190 GTCAGGCAAAGGGAGGAATTTTAC 60.082 45.833 0.00 0.00 0.00 2.01
551 724 0.824109 CTTGACCGTAGATCCTGCCA 59.176 55.000 0.00 0.00 0.00 4.92
645 947 1.966451 CAACTCCACTTCGGCACCC 60.966 63.158 0.00 0.00 33.14 4.61
646 948 2.448582 AACTCCACTTCGGCACCCA 61.449 57.895 0.00 0.00 33.14 4.51
674 976 0.745845 CCGCCAAGGAGATGAACCTG 60.746 60.000 0.00 0.00 45.00 4.00
822 1125 1.005097 TCTAGCCGACCAGGAACACTA 59.995 52.381 0.00 0.00 45.00 2.74
1090 1397 1.002430 GAAGATGTGTGGCTCCTGACA 59.998 52.381 0.00 0.00 0.00 3.58
1144 1452 1.739466 GAATCCTGTTTGCAGCGATCA 59.261 47.619 0.00 0.00 41.26 2.92
1223 1532 2.280823 GAAATCGACGAGGAGGCCGT 62.281 60.000 3.01 0.00 43.56 5.68
1244 1553 3.388841 GGAGCTCGTCCCCTTTCA 58.611 61.111 7.83 0.00 39.88 2.69
1245 1554 1.908483 GGAGCTCGTCCCCTTTCAT 59.092 57.895 7.83 0.00 39.88 2.57
1246 1555 0.179070 GGAGCTCGTCCCCTTTCATC 60.179 60.000 7.83 0.00 39.88 2.92
1750 4194 4.439289 GCTAAACCACTTGATCAGCCATTC 60.439 45.833 0.00 0.00 0.00 2.67
1895 4483 3.947196 GGCATCCATGTTATGTCTGTGAA 59.053 43.478 7.03 0.00 0.00 3.18
1915 4503 6.183360 TGTGAATACACCTTGTTTTTCAGGAC 60.183 38.462 0.00 0.00 45.40 3.85
1964 4555 3.959495 ACCCATTGCCTGTATCTGATT 57.041 42.857 0.00 0.00 0.00 2.57
2035 4626 3.523157 TGAAGCTTGGGACCATTGAGATA 59.477 43.478 2.10 0.00 0.00 1.98
2150 4741 3.562182 GTTTTCTCCAAGGAGGGAAACA 58.438 45.455 26.23 6.53 41.92 2.83
2229 4820 2.149578 CTGGGCTCAGAAGTTTGTCAG 58.850 52.381 8.28 0.00 43.49 3.51
2269 4860 5.720371 ACATTGCAAGCAGGTAATTGTTA 57.280 34.783 4.94 0.00 0.00 2.41
2550 6596 3.470645 ACATATTTAGGACAGGTCGCC 57.529 47.619 0.00 0.00 0.00 5.54
2574 6622 4.840716 TGGCCAAATAATTTGCCTTGAT 57.159 36.364 0.61 0.00 39.31 2.57
2757 7601 5.045869 TCAAGGATCAGGGGTACAAAGTTAG 60.046 44.000 0.00 0.00 0.00 2.34
2769 7613 8.606602 GGGGTACAAAGTTAGATTGTATTTACG 58.393 37.037 0.00 0.00 43.09 3.18
2921 7766 1.134491 CCCAAGGTCGACTATGAACCC 60.134 57.143 16.46 0.00 0.00 4.11
3210 8094 2.551413 AAGGGGATTGGTGCAGCCT 61.551 57.895 14.36 0.00 38.35 4.58
3311 8210 0.601841 GGCAAAACGACGAGGAGGAA 60.602 55.000 0.00 0.00 0.00 3.36
3345 8244 0.839946 GCCTTATGAAGCCTGGGAGA 59.160 55.000 0.00 0.00 0.00 3.71
3535 8434 1.221414 GAACTCAAAGCTCGCTGTGT 58.779 50.000 8.80 0.00 33.20 3.72
3554 8453 3.623060 GTGTCAATATCAAGCATGTCCGT 59.377 43.478 0.00 0.00 0.00 4.69
3936 10955 2.823924 TCTGCCTTTAGTGTGCGTTA 57.176 45.000 0.00 0.00 0.00 3.18
3944 10963 6.095300 TGCCTTTAGTGTGCGTTATACTACTA 59.905 38.462 0.00 0.00 33.38 1.82
3945 10964 6.636044 GCCTTTAGTGTGCGTTATACTACTAG 59.364 42.308 0.00 0.00 33.38 2.57
3989 11008 3.057019 CAGCTTGCAAGTGTCGTACTAA 58.943 45.455 26.55 0.00 39.18 2.24
4028 11047 4.849383 CGTTAATTGCTTGAACCTTTACCG 59.151 41.667 0.00 0.00 0.00 4.02
4048 11067 3.195661 CGGAGCTTATTACTTGTGGTCC 58.804 50.000 0.00 0.00 40.62 4.46
4069 11088 6.429078 GGTCCGAAGTTTTAACAAATACTCCT 59.571 38.462 0.00 0.00 0.00 3.69
4098 11117 6.849305 GTCCCATAATATAAGACGTTTTTGCG 59.151 38.462 0.00 0.00 37.94 4.85
4323 11362 4.210724 AGCCATAAAGTACGTAGCCAAA 57.789 40.909 0.00 0.00 0.00 3.28
4373 11412 9.507280 TTTGAGAATATTACGTTAGTAGAACGG 57.493 33.333 13.71 0.00 46.86 4.44
4375 11414 8.677300 TGAGAATATTACGTTAGTAGAACGGTT 58.323 33.333 13.71 0.00 46.86 4.44
4408 11447 6.469410 TCGACCCAAGACTTGTTTGTTATAT 58.531 36.000 14.03 0.00 0.00 0.86
4449 11488 8.534333 TCATCAGAAGTCAGTTGTTATAACAC 57.466 34.615 17.85 12.66 38.92 3.32
4477 11516 8.691661 AGTGTTAATGTGTGAATTAGTTCCTT 57.308 30.769 0.00 0.00 33.26 3.36
4481 11520 6.759497 AATGTGTGAATTAGTTCCTTAGGC 57.241 37.500 0.00 0.00 33.26 3.93
4520 11559 6.256686 AGTCACTTCTTATCGTACGATGAAC 58.743 40.000 34.91 21.87 36.17 3.18
4523 11562 6.965500 TCACTTCTTATCGTACGATGAACTTC 59.035 38.462 34.91 0.00 36.17 3.01
4529 11568 1.403249 CGTACGATGAACTTCGGGGTT 60.403 52.381 10.44 0.00 43.33 4.11
4546 11585 1.400242 GGTTGCTCAAACGTCATCTGC 60.400 52.381 0.00 0.00 39.91 4.26
4547 11586 0.512518 TTGCTCAAACGTCATCTGCG 59.487 50.000 0.00 0.00 0.00 5.18
4575 11614 5.518847 CGGTGATCATAACGACAACTTACAT 59.481 40.000 0.00 0.00 0.00 2.29
4599 11638 6.929625 TGTTCATCAAAAAGTTTGACAAGGA 58.070 32.000 5.59 0.33 0.00 3.36
4602 11641 6.337356 TCATCAAAAAGTTTGACAAGGAACC 58.663 36.000 5.59 0.00 0.00 3.62
4637 11676 1.153901 GGATTTGCTCCGACGACGA 60.154 57.895 9.28 0.00 42.66 4.20
4681 11720 2.100631 CGGTGTGACGGCTTCCATC 61.101 63.158 0.00 0.00 0.00 3.51
4690 11729 1.511305 GGCTTCCATCGTCGTCTGA 59.489 57.895 0.00 0.00 0.00 3.27
4719 11758 6.474819 CACAGGTGTGTCGAAATATGTTAA 57.525 37.500 1.70 0.00 40.96 2.01
4720 11759 7.072177 CACAGGTGTGTCGAAATATGTTAAT 57.928 36.000 1.70 0.00 40.96 1.40
4721 11760 6.960992 CACAGGTGTGTCGAAATATGTTAATG 59.039 38.462 1.70 0.00 40.96 1.90
4722 11761 6.876789 ACAGGTGTGTCGAAATATGTTAATGA 59.123 34.615 0.00 0.00 26.76 2.57
4723 11762 7.064609 ACAGGTGTGTCGAAATATGTTAATGAG 59.935 37.037 0.00 0.00 26.76 2.90
4724 11763 7.277760 CAGGTGTGTCGAAATATGTTAATGAGA 59.722 37.037 0.00 0.00 0.00 3.27
4725 11764 7.822334 AGGTGTGTCGAAATATGTTAATGAGAA 59.178 33.333 0.00 0.00 0.00 2.87
4726 11765 8.447833 GGTGTGTCGAAATATGTTAATGAGAAA 58.552 33.333 0.00 0.00 0.00 2.52
4727 11766 9.478019 GTGTGTCGAAATATGTTAATGAGAAAG 57.522 33.333 0.00 0.00 0.00 2.62
4728 11767 8.175069 TGTGTCGAAATATGTTAATGAGAAAGC 58.825 33.333 0.00 0.00 0.00 3.51
4729 11768 8.175069 GTGTCGAAATATGTTAATGAGAAAGCA 58.825 33.333 0.00 0.00 0.00 3.91
4730 11769 8.390354 TGTCGAAATATGTTAATGAGAAAGCAG 58.610 33.333 0.00 0.00 0.00 4.24
4731 11770 7.374491 GTCGAAATATGTTAATGAGAAAGCAGC 59.626 37.037 0.00 0.00 0.00 5.25
4732 11771 7.065683 TCGAAATATGTTAATGAGAAAGCAGCA 59.934 33.333 0.00 0.00 0.00 4.41
4733 11772 7.697710 CGAAATATGTTAATGAGAAAGCAGCAA 59.302 33.333 0.00 0.00 0.00 3.91
4734 11773 9.357652 GAAATATGTTAATGAGAAAGCAGCAAA 57.642 29.630 0.00 0.00 0.00 3.68
4735 11774 9.880157 AAATATGTTAATGAGAAAGCAGCAAAT 57.120 25.926 0.00 0.00 0.00 2.32
4736 11775 9.525409 AATATGTTAATGAGAAAGCAGCAAATC 57.475 29.630 0.00 0.00 0.00 2.17
4737 11776 5.393124 TGTTAATGAGAAAGCAGCAAATCG 58.607 37.500 0.00 0.00 0.00 3.34
4738 11777 2.556534 ATGAGAAAGCAGCAAATCGC 57.443 45.000 0.00 0.00 42.91 4.58
4751 11790 4.202578 GCAAATCGCTAATGAGGAGAAC 57.797 45.455 0.00 0.00 37.77 3.01
4752 11791 3.873952 GCAAATCGCTAATGAGGAGAACT 59.126 43.478 0.00 0.00 37.77 3.01
4753 11792 4.260538 GCAAATCGCTAATGAGGAGAACTG 60.261 45.833 0.00 0.00 37.77 3.16
4754 11793 4.744795 AATCGCTAATGAGGAGAACTGT 57.255 40.909 0.00 0.00 0.00 3.55
4755 11794 5.854010 AATCGCTAATGAGGAGAACTGTA 57.146 39.130 0.00 0.00 0.00 2.74
4756 11795 6.412362 AATCGCTAATGAGGAGAACTGTAT 57.588 37.500 0.00 0.00 0.00 2.29
4757 11796 7.526142 AATCGCTAATGAGGAGAACTGTATA 57.474 36.000 0.00 0.00 0.00 1.47
4758 11797 6.954487 TCGCTAATGAGGAGAACTGTATAA 57.046 37.500 0.00 0.00 0.00 0.98
4759 11798 7.526142 TCGCTAATGAGGAGAACTGTATAAT 57.474 36.000 0.00 0.00 0.00 1.28
4760 11799 7.371159 TCGCTAATGAGGAGAACTGTATAATG 58.629 38.462 0.00 0.00 0.00 1.90
4761 11800 7.230712 TCGCTAATGAGGAGAACTGTATAATGA 59.769 37.037 0.00 0.00 0.00 2.57
4762 11801 7.540400 CGCTAATGAGGAGAACTGTATAATGAG 59.460 40.741 0.00 0.00 0.00 2.90
4763 11802 7.330700 GCTAATGAGGAGAACTGTATAATGAGC 59.669 40.741 0.00 0.00 0.00 4.26
4764 11803 6.737720 ATGAGGAGAACTGTATAATGAGCA 57.262 37.500 0.00 0.00 0.00 4.26
4765 11804 6.737720 TGAGGAGAACTGTATAATGAGCAT 57.262 37.500 0.00 0.00 0.00 3.79
4766 11805 6.519382 TGAGGAGAACTGTATAATGAGCATG 58.481 40.000 0.00 0.00 0.00 4.06
4767 11806 6.098838 TGAGGAGAACTGTATAATGAGCATGT 59.901 38.462 0.00 0.00 0.00 3.21
4768 11807 6.286758 AGGAGAACTGTATAATGAGCATGTG 58.713 40.000 0.00 0.00 0.00 3.21
4769 11808 6.051717 GGAGAACTGTATAATGAGCATGTGT 58.948 40.000 0.00 0.00 0.00 3.72
4770 11809 7.069950 AGGAGAACTGTATAATGAGCATGTGTA 59.930 37.037 0.00 0.00 0.00 2.90
4771 11810 7.875041 GGAGAACTGTATAATGAGCATGTGTAT 59.125 37.037 0.00 0.00 0.00 2.29
4772 11811 8.599055 AGAACTGTATAATGAGCATGTGTATG 57.401 34.615 0.00 0.00 37.36 2.39
4773 11812 8.424133 AGAACTGTATAATGAGCATGTGTATGA 58.576 33.333 0.00 0.00 36.36 2.15
4774 11813 7.953158 ACTGTATAATGAGCATGTGTATGAC 57.047 36.000 0.00 0.00 36.36 3.06
4775 11814 7.730084 ACTGTATAATGAGCATGTGTATGACT 58.270 34.615 0.00 0.00 36.36 3.41
4776 11815 8.206867 ACTGTATAATGAGCATGTGTATGACTT 58.793 33.333 0.00 0.00 36.36 3.01
4777 11816 9.696917 CTGTATAATGAGCATGTGTATGACTTA 57.303 33.333 0.00 0.00 36.36 2.24
4781 11820 7.783090 AATGAGCATGTGTATGACTTAAGAG 57.217 36.000 10.09 0.00 36.36 2.85
4782 11821 5.664457 TGAGCATGTGTATGACTTAAGAGG 58.336 41.667 10.09 0.00 36.36 3.69
4783 11822 5.422012 TGAGCATGTGTATGACTTAAGAGGA 59.578 40.000 10.09 0.00 36.36 3.71
4784 11823 6.098838 TGAGCATGTGTATGACTTAAGAGGAT 59.901 38.462 10.09 0.48 36.36 3.24
4785 11824 7.287696 TGAGCATGTGTATGACTTAAGAGGATA 59.712 37.037 10.09 0.00 36.36 2.59
4786 11825 7.437748 AGCATGTGTATGACTTAAGAGGATAC 58.562 38.462 10.09 11.68 36.36 2.24
4787 11826 7.288852 AGCATGTGTATGACTTAAGAGGATACT 59.711 37.037 10.09 0.00 43.82 2.12
4788 11827 7.383572 GCATGTGTATGACTTAAGAGGATACTG 59.616 40.741 10.09 7.68 41.90 2.74
4789 11828 8.633561 CATGTGTATGACTTAAGAGGATACTGA 58.366 37.037 10.09 4.17 41.90 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 2.662596 CCAGTGCTTCGGCCAGTA 59.337 61.111 2.24 0.00 40.91 2.74
255 257 3.817084 TCCAGTCAATGCAGAAGTCTTTG 59.183 43.478 0.00 0.00 0.00 2.77
339 341 1.462283 CTCGATGTCCAAACACTGCAG 59.538 52.381 13.48 13.48 38.48 4.41
340 342 1.202639 ACTCGATGTCCAAACACTGCA 60.203 47.619 0.00 0.00 38.48 4.41
341 343 1.512926 ACTCGATGTCCAAACACTGC 58.487 50.000 0.00 0.00 38.48 4.40
342 344 2.872245 ACAACTCGATGTCCAAACACTG 59.128 45.455 0.00 0.00 38.48 3.66
343 345 3.194005 ACAACTCGATGTCCAAACACT 57.806 42.857 0.00 0.00 38.48 3.55
344 346 4.084013 CCTTACAACTCGATGTCCAAACAC 60.084 45.833 0.00 0.00 38.48 3.32
345 347 4.062293 CCTTACAACTCGATGTCCAAACA 58.938 43.478 0.00 0.00 40.38 2.83
346 348 4.312443 TCCTTACAACTCGATGTCCAAAC 58.688 43.478 0.00 0.00 34.75 2.93
347 349 4.610605 TCCTTACAACTCGATGTCCAAA 57.389 40.909 0.00 0.00 34.75 3.28
348 350 4.819105 ATCCTTACAACTCGATGTCCAA 57.181 40.909 0.00 0.00 34.75 3.53
349 351 4.503910 CAATCCTTACAACTCGATGTCCA 58.496 43.478 0.00 0.00 34.75 4.02
350 352 3.309954 GCAATCCTTACAACTCGATGTCC 59.690 47.826 0.00 0.00 34.75 4.02
351 353 3.932710 TGCAATCCTTACAACTCGATGTC 59.067 43.478 0.00 0.00 34.75 3.06
352 354 3.937814 TGCAATCCTTACAACTCGATGT 58.062 40.909 0.00 0.00 37.32 3.06
353 355 5.088141 GATGCAATCCTTACAACTCGATG 57.912 43.478 0.00 0.00 37.38 3.84
367 369 3.256631 ACAAACAACCTGGAGATGCAATC 59.743 43.478 0.00 0.00 46.04 2.67
368 370 3.006110 CACAAACAACCTGGAGATGCAAT 59.994 43.478 0.00 0.00 0.00 3.56
369 371 2.361757 CACAAACAACCTGGAGATGCAA 59.638 45.455 0.00 0.00 0.00 4.08
370 372 1.955778 CACAAACAACCTGGAGATGCA 59.044 47.619 0.00 0.00 0.00 3.96
371 373 1.270550 CCACAAACAACCTGGAGATGC 59.729 52.381 0.00 0.00 0.00 3.91
372 374 2.862541 TCCACAAACAACCTGGAGATG 58.137 47.619 0.00 0.00 30.27 2.90
376 378 1.133915 GTCCTCCACAAACAACCTGGA 60.134 52.381 0.00 0.00 32.93 3.86
377 379 1.318576 GTCCTCCACAAACAACCTGG 58.681 55.000 0.00 0.00 0.00 4.45
378 380 0.944386 CGTCCTCCACAAACAACCTG 59.056 55.000 0.00 0.00 0.00 4.00
379 381 0.834612 TCGTCCTCCACAAACAACCT 59.165 50.000 0.00 0.00 0.00 3.50
380 382 1.670791 TTCGTCCTCCACAAACAACC 58.329 50.000 0.00 0.00 0.00 3.77
381 383 2.875933 TGATTCGTCCTCCACAAACAAC 59.124 45.455 0.00 0.00 0.00 3.32
382 384 3.138304 CTGATTCGTCCTCCACAAACAA 58.862 45.455 0.00 0.00 0.00 2.83
383 385 2.367241 TCTGATTCGTCCTCCACAAACA 59.633 45.455 0.00 0.00 0.00 2.83
384 386 3.040147 TCTGATTCGTCCTCCACAAAC 57.960 47.619 0.00 0.00 0.00 2.93
385 387 3.599343 CATCTGATTCGTCCTCCACAAA 58.401 45.455 0.00 0.00 0.00 2.83
386 388 2.093500 CCATCTGATTCGTCCTCCACAA 60.093 50.000 0.00 0.00 0.00 3.33
387 389 1.482182 CCATCTGATTCGTCCTCCACA 59.518 52.381 0.00 0.00 0.00 4.17
388 390 1.202580 CCCATCTGATTCGTCCTCCAC 60.203 57.143 0.00 0.00 0.00 4.02
389 391 1.123077 CCCATCTGATTCGTCCTCCA 58.877 55.000 0.00 0.00 0.00 3.86
390 392 0.250081 GCCCATCTGATTCGTCCTCC 60.250 60.000 0.00 0.00 0.00 4.30
391 393 0.250081 GGCCCATCTGATTCGTCCTC 60.250 60.000 0.00 0.00 0.00 3.71
392 394 0.982852 TGGCCCATCTGATTCGTCCT 60.983 55.000 0.00 0.00 0.00 3.85
393 395 0.533755 CTGGCCCATCTGATTCGTCC 60.534 60.000 0.00 0.00 0.00 4.79
394 396 0.179000 ACTGGCCCATCTGATTCGTC 59.821 55.000 0.00 0.00 0.00 4.20
395 397 0.179000 GACTGGCCCATCTGATTCGT 59.821 55.000 0.00 0.00 0.00 3.85
396 398 0.178767 TGACTGGCCCATCTGATTCG 59.821 55.000 0.00 0.00 0.00 3.34
397 399 2.106166 AGATGACTGGCCCATCTGATTC 59.894 50.000 18.84 5.53 46.31 2.52
398 400 2.133520 AGATGACTGGCCCATCTGATT 58.866 47.619 18.84 0.00 46.31 2.57
399 401 1.817087 AGATGACTGGCCCATCTGAT 58.183 50.000 18.84 0.00 46.31 2.90
400 402 3.329497 AGATGACTGGCCCATCTGA 57.671 52.632 18.84 0.00 46.31 3.27
403 405 2.228059 CATCAAGATGACTGGCCCATC 58.772 52.381 11.39 11.39 41.20 3.51
404 406 1.133575 CCATCAAGATGACTGGCCCAT 60.134 52.381 11.48 0.00 41.20 4.00
405 407 0.256752 CCATCAAGATGACTGGCCCA 59.743 55.000 11.48 0.00 41.20 5.36
406 408 0.548031 TCCATCAAGATGACTGGCCC 59.452 55.000 11.48 0.00 41.20 5.80
407 409 1.211457 ACTCCATCAAGATGACTGGCC 59.789 52.381 11.48 0.00 41.20 5.36
408 410 2.093288 TCACTCCATCAAGATGACTGGC 60.093 50.000 11.48 0.00 41.20 4.85
409 411 3.529533 GTCACTCCATCAAGATGACTGG 58.470 50.000 11.48 4.22 41.20 4.00
410 412 3.185330 CGTCACTCCATCAAGATGACTG 58.815 50.000 11.48 4.02 41.20 3.51
411 413 2.417924 GCGTCACTCCATCAAGATGACT 60.418 50.000 11.48 0.00 41.20 3.41
412 414 1.929836 GCGTCACTCCATCAAGATGAC 59.070 52.381 11.48 1.68 41.20 3.06
413 415 1.550072 TGCGTCACTCCATCAAGATGA 59.450 47.619 11.48 0.00 41.20 2.92
414 416 1.931841 CTGCGTCACTCCATCAAGATG 59.068 52.381 3.07 3.07 38.51 2.90
415 417 1.827344 TCTGCGTCACTCCATCAAGAT 59.173 47.619 0.00 0.00 0.00 2.40
416 418 1.203287 CTCTGCGTCACTCCATCAAGA 59.797 52.381 0.00 0.00 0.00 3.02
417 419 1.203287 TCTCTGCGTCACTCCATCAAG 59.797 52.381 0.00 0.00 0.00 3.02
418 420 1.203287 CTCTCTGCGTCACTCCATCAA 59.797 52.381 0.00 0.00 0.00 2.57
419 421 0.813821 CTCTCTGCGTCACTCCATCA 59.186 55.000 0.00 0.00 0.00 3.07
420 422 0.102120 CCTCTCTGCGTCACTCCATC 59.898 60.000 0.00 0.00 0.00 3.51
421 423 1.326213 CCCTCTCTGCGTCACTCCAT 61.326 60.000 0.00 0.00 0.00 3.41
422 424 1.979155 CCCTCTCTGCGTCACTCCA 60.979 63.158 0.00 0.00 0.00 3.86
423 425 1.536943 AACCCTCTCTGCGTCACTCC 61.537 60.000 0.00 0.00 0.00 3.85
424 426 0.318762 AAACCCTCTCTGCGTCACTC 59.681 55.000 0.00 0.00 0.00 3.51
425 427 0.759346 AAAACCCTCTCTGCGTCACT 59.241 50.000 0.00 0.00 0.00 3.41
426 428 1.594331 AAAAACCCTCTCTGCGTCAC 58.406 50.000 0.00 0.00 0.00 3.67
427 429 2.631062 TCTAAAAACCCTCTCTGCGTCA 59.369 45.455 0.00 0.00 0.00 4.35
428 430 3.314541 TCTAAAAACCCTCTCTGCGTC 57.685 47.619 0.00 0.00 0.00 5.19
429 431 3.071167 AGTTCTAAAAACCCTCTCTGCGT 59.929 43.478 0.00 0.00 0.00 5.24
430 432 3.433615 CAGTTCTAAAAACCCTCTCTGCG 59.566 47.826 0.00 0.00 0.00 5.18
431 433 3.753797 CCAGTTCTAAAAACCCTCTCTGC 59.246 47.826 0.00 0.00 0.00 4.26
432 434 3.753797 GCCAGTTCTAAAAACCCTCTCTG 59.246 47.826 0.00 0.00 0.00 3.35
433 435 3.394606 TGCCAGTTCTAAAAACCCTCTCT 59.605 43.478 0.00 0.00 0.00 3.10
434 436 3.751518 TGCCAGTTCTAAAAACCCTCTC 58.248 45.455 0.00 0.00 0.00 3.20
435 437 3.498661 CCTGCCAGTTCTAAAAACCCTCT 60.499 47.826 0.00 0.00 0.00 3.69
436 438 2.820197 CCTGCCAGTTCTAAAAACCCTC 59.180 50.000 0.00 0.00 0.00 4.30
437 439 2.490902 CCCTGCCAGTTCTAAAAACCCT 60.491 50.000 0.00 0.00 0.00 4.34
438 440 1.893137 CCCTGCCAGTTCTAAAAACCC 59.107 52.381 0.00 0.00 0.00 4.11
439 441 2.820197 CTCCCTGCCAGTTCTAAAAACC 59.180 50.000 0.00 0.00 0.00 3.27
440 442 2.229062 GCTCCCTGCCAGTTCTAAAAAC 59.771 50.000 0.00 0.00 35.15 2.43
441 443 2.514803 GCTCCCTGCCAGTTCTAAAAA 58.485 47.619 0.00 0.00 35.15 1.94
442 444 2.200373 GCTCCCTGCCAGTTCTAAAA 57.800 50.000 0.00 0.00 35.15 1.52
443 445 3.957288 GCTCCCTGCCAGTTCTAAA 57.043 52.632 0.00 0.00 35.15 1.85
453 455 1.222113 GAGGTTACTGGCTCCCTGC 59.778 63.158 0.00 0.00 41.94 4.85
454 456 0.250513 GTGAGGTTACTGGCTCCCTG 59.749 60.000 0.00 0.00 0.00 4.45
455 457 0.117340 AGTGAGGTTACTGGCTCCCT 59.883 55.000 0.00 0.00 0.00 4.20
456 458 0.250513 CAGTGAGGTTACTGGCTCCC 59.749 60.000 0.00 0.00 43.35 4.30
457 459 0.391793 GCAGTGAGGTTACTGGCTCC 60.392 60.000 7.87 0.00 46.32 4.70
458 460 0.321671 TGCAGTGAGGTTACTGGCTC 59.678 55.000 7.87 0.00 46.32 4.70
459 461 0.764890 TTGCAGTGAGGTTACTGGCT 59.235 50.000 7.87 0.00 46.32 4.75
460 462 1.160137 CTTGCAGTGAGGTTACTGGC 58.840 55.000 7.87 1.87 46.32 4.85
461 463 2.300152 TCTCTTGCAGTGAGGTTACTGG 59.700 50.000 15.66 0.00 46.32 4.00
463 465 3.119316 CGATCTCTTGCAGTGAGGTTACT 60.119 47.826 15.66 0.00 32.78 2.24
464 466 3.182967 CGATCTCTTGCAGTGAGGTTAC 58.817 50.000 15.66 1.50 32.78 2.50
465 467 2.826128 ACGATCTCTTGCAGTGAGGTTA 59.174 45.455 15.66 1.52 32.78 2.85
466 468 1.620819 ACGATCTCTTGCAGTGAGGTT 59.379 47.619 15.66 6.83 32.78 3.50
467 469 1.203523 GACGATCTCTTGCAGTGAGGT 59.796 52.381 15.66 10.64 32.78 3.85
468 470 1.203287 TGACGATCTCTTGCAGTGAGG 59.797 52.381 15.66 5.79 32.78 3.86
469 471 2.528125 CTGACGATCTCTTGCAGTGAG 58.472 52.381 11.22 11.22 0.00 3.51
470 472 1.203287 CCTGACGATCTCTTGCAGTGA 59.797 52.381 0.00 0.00 0.00 3.41
471 473 1.638133 CCTGACGATCTCTTGCAGTG 58.362 55.000 0.00 0.00 0.00 3.66
472 474 0.108424 GCCTGACGATCTCTTGCAGT 60.108 55.000 0.00 0.00 0.00 4.40
473 475 0.108472 TGCCTGACGATCTCTTGCAG 60.108 55.000 0.00 0.00 0.00 4.41
474 476 0.321346 TTGCCTGACGATCTCTTGCA 59.679 50.000 0.00 0.00 0.00 4.08
475 477 1.396301 CTTTGCCTGACGATCTCTTGC 59.604 52.381 0.00 0.00 0.00 4.01
476 478 2.005451 CCTTTGCCTGACGATCTCTTG 58.995 52.381 0.00 0.00 0.00 3.02
477 479 1.065854 CCCTTTGCCTGACGATCTCTT 60.066 52.381 0.00 0.00 0.00 2.85
478 480 0.539051 CCCTTTGCCTGACGATCTCT 59.461 55.000 0.00 0.00 0.00 3.10
479 481 0.537188 TCCCTTTGCCTGACGATCTC 59.463 55.000 0.00 0.00 0.00 2.75
480 482 0.539051 CTCCCTTTGCCTGACGATCT 59.461 55.000 0.00 0.00 0.00 2.75
481 483 0.462759 CCTCCCTTTGCCTGACGATC 60.463 60.000 0.00 0.00 0.00 3.69
482 484 0.909610 TCCTCCCTTTGCCTGACGAT 60.910 55.000 0.00 0.00 0.00 3.73
483 485 1.125093 TTCCTCCCTTTGCCTGACGA 61.125 55.000 0.00 0.00 0.00 4.20
484 486 0.035056 ATTCCTCCCTTTGCCTGACG 60.035 55.000 0.00 0.00 0.00 4.35
485 487 2.222227 AATTCCTCCCTTTGCCTGAC 57.778 50.000 0.00 0.00 0.00 3.51
486 488 2.999185 AAATTCCTCCCTTTGCCTGA 57.001 45.000 0.00 0.00 0.00 3.86
487 489 3.195610 GGTAAAATTCCTCCCTTTGCCTG 59.804 47.826 0.00 0.00 33.50 4.85
488 490 3.181412 TGGTAAAATTCCTCCCTTTGCCT 60.181 43.478 0.00 0.00 36.23 4.75
489 491 3.169908 TGGTAAAATTCCTCCCTTTGCC 58.830 45.455 0.00 0.00 35.92 4.52
490 492 5.451937 GCTATGGTAAAATTCCTCCCTTTGC 60.452 44.000 0.00 0.00 0.00 3.68
491 493 5.656416 TGCTATGGTAAAATTCCTCCCTTTG 59.344 40.000 0.00 0.00 0.00 2.77
492 494 5.656859 GTGCTATGGTAAAATTCCTCCCTTT 59.343 40.000 0.00 0.00 0.00 3.11
493 495 5.044105 AGTGCTATGGTAAAATTCCTCCCTT 60.044 40.000 0.00 0.00 0.00 3.95
494 496 4.478686 AGTGCTATGGTAAAATTCCTCCCT 59.521 41.667 0.00 0.00 0.00 4.20
495 497 4.793201 AGTGCTATGGTAAAATTCCTCCC 58.207 43.478 0.00 0.00 0.00 4.30
496 498 5.450550 GCAAGTGCTATGGTAAAATTCCTCC 60.451 44.000 0.00 0.00 38.21 4.30
497 499 5.582550 GCAAGTGCTATGGTAAAATTCCTC 58.417 41.667 0.00 0.00 38.21 3.71
498 500 5.582689 GCAAGTGCTATGGTAAAATTCCT 57.417 39.130 0.00 0.00 38.21 3.36
645 947 0.742990 TCCTTGGCGGCGTAAGATTG 60.743 55.000 21.68 9.73 43.02 2.67
646 948 0.462047 CTCCTTGGCGGCGTAAGATT 60.462 55.000 21.68 0.00 43.02 2.40
674 976 3.055819 TCTGACAAGTGGTAATCAGAGCC 60.056 47.826 0.00 0.00 41.99 4.70
1060 1367 0.170339 ACACATCTTCGATCGCACGA 59.830 50.000 11.09 6.76 40.55 4.35
1144 1452 2.760092 GAGTGCCTCTGTCTGAAGATCT 59.240 50.000 0.00 0.00 0.00 2.75
1206 1515 2.754658 ACGGCCTCCTCGTCGATT 60.755 61.111 0.00 0.00 35.87 3.34
1263 1583 1.532868 CCGTTCAAGCCAAACAGAGAG 59.467 52.381 0.00 0.00 0.00 3.20
1895 4483 5.061721 AGGTCCTGAAAAACAAGGTGTAT 57.938 39.130 0.00 0.00 0.00 2.29
1915 4503 1.077212 CTCCATTGTGCCAGGGAGG 60.077 63.158 12.89 0.00 42.55 4.30
1964 4555 1.556911 GAGCTCAGACCAATCCCTGAA 59.443 52.381 9.40 0.00 38.75 3.02
2229 4820 6.371548 TGCAATGTAATTCAGGAGTTCACTAC 59.628 38.462 0.00 0.00 31.22 2.73
2269 4860 7.454380 TCAAGAATGGGAATTTAGGACACAAAT 59.546 33.333 0.00 0.00 0.00 2.32
2574 6622 9.999009 CGTAAATATCTAACAAGAGTCAGTACA 57.001 33.333 0.00 0.00 0.00 2.90
2683 7526 8.641498 AAACTCTCCTACAATCATTCACAATT 57.359 30.769 0.00 0.00 0.00 2.32
2720 7564 9.236006 CCCCTGATCCTTGATTAATATAACAAG 57.764 37.037 7.37 7.37 39.24 3.16
2757 7601 9.888878 TGTAGTGATAGCTACGTAAATACAATC 57.111 33.333 0.00 0.00 43.03 2.67
2921 7766 1.558756 AGACTTCAAGATGCTCAGGGG 59.441 52.381 0.00 0.00 0.00 4.79
3311 8210 0.715987 AAGGCTCCTCCTCTTCCTCT 59.284 55.000 0.00 0.00 46.94 3.69
3335 8234 1.979693 GTGTCTCGTCTCCCAGGCT 60.980 63.158 0.00 0.00 0.00 4.58
3345 8244 0.247736 GCCTCCTCATTGTGTCTCGT 59.752 55.000 0.00 0.00 0.00 4.18
3404 8303 2.590007 CCGTAGCCTGCCATCTGC 60.590 66.667 0.00 0.00 41.77 4.26
3535 8434 4.122046 CAGACGGACATGCTTGATATTGA 58.878 43.478 6.60 0.00 0.00 2.57
3661 9457 1.078848 GCTGCCTCGTTGTGGAGAT 60.079 57.895 0.00 0.00 36.08 2.75
3936 10955 9.444600 CCAACCATTTACACAAACTAGTAGTAT 57.555 33.333 2.50 0.00 0.00 2.12
3944 10963 3.316868 CCGTCCAACCATTTACACAAACT 59.683 43.478 0.00 0.00 0.00 2.66
3945 10964 3.551250 CCCGTCCAACCATTTACACAAAC 60.551 47.826 0.00 0.00 0.00 2.93
3989 11008 4.720649 TTAACGTGAGAATAGAGCTGCT 57.279 40.909 0.00 0.00 0.00 4.24
4028 11047 3.118884 TCGGACCACAAGTAATAAGCTCC 60.119 47.826 0.00 0.00 0.00 4.70
4048 11067 7.013529 CGGAAGGAGTATTTGTTAAAACTTCG 58.986 38.462 0.00 0.00 34.27 3.79
4210 11249 1.806542 AGTTGCGCCATTTGTACTCTG 59.193 47.619 4.18 0.00 0.00 3.35
4239 11278 5.684550 ACCTAACAAAGTTCCATCGAAAC 57.315 39.130 0.00 0.00 0.00 2.78
4358 11397 7.139896 TCAACATAACCGTTCTACTAACGTA 57.860 36.000 9.16 0.00 41.64 3.57
4366 11405 5.104374 GGTCGATTCAACATAACCGTTCTA 58.896 41.667 0.00 0.00 0.00 2.10
4373 11412 4.935808 AGTCTTGGGTCGATTCAACATAAC 59.064 41.667 0.00 0.00 0.00 1.89
4375 11414 4.819105 AGTCTTGGGTCGATTCAACATA 57.181 40.909 0.00 0.00 0.00 2.29
4378 11417 3.139077 ACAAGTCTTGGGTCGATTCAAC 58.861 45.455 16.85 0.00 34.12 3.18
4408 11447 9.676861 ACTTCTGATGATGATTGTATCTCAAAA 57.323 29.630 0.00 0.00 39.62 2.44
4423 11462 9.155975 GTGTTATAACAACTGACTTCTGATGAT 57.844 33.333 19.63 0.00 41.21 2.45
4424 11463 7.328493 CGTGTTATAACAACTGACTTCTGATGA 59.672 37.037 19.63 0.00 41.21 2.92
4425 11464 7.411912 CCGTGTTATAACAACTGACTTCTGATG 60.412 40.741 19.63 0.00 41.21 3.07
4426 11465 6.590292 CCGTGTTATAACAACTGACTTCTGAT 59.410 38.462 19.63 0.00 41.21 2.90
4449 11488 6.721571 ACTAATTCACACATTAACACTCCG 57.278 37.500 0.00 0.00 0.00 4.63
4460 11499 4.042311 TGGCCTAAGGAACTAATTCACACA 59.958 41.667 3.32 0.00 38.49 3.72
4477 11516 5.712446 GTGACTATGATACTCTCATGGCCTA 59.288 44.000 3.32 0.00 44.44 3.93
4481 11520 7.523293 AGAAGTGACTATGATACTCTCATGG 57.477 40.000 0.00 0.00 44.48 3.66
4520 11559 1.164041 ACGTTTGAGCAACCCCGAAG 61.164 55.000 0.00 0.00 30.65 3.79
4523 11562 1.234615 ATGACGTTTGAGCAACCCCG 61.235 55.000 0.00 0.00 30.65 5.73
4529 11568 0.319469 TCGCAGATGACGTTTGAGCA 60.319 50.000 0.00 0.00 0.00 4.26
4546 11585 1.844357 GTCGTTATGATCACCGTGTCG 59.156 52.381 0.00 0.00 0.00 4.35
4547 11586 2.871133 TGTCGTTATGATCACCGTGTC 58.129 47.619 0.00 0.00 0.00 3.67
4575 11614 6.929625 TCCTTGTCAAACTTTTTGATGAACA 58.070 32.000 4.72 0.00 0.00 3.18
4599 11638 2.376518 CCCACCCATGAGCTATATGGTT 59.623 50.000 21.70 10.23 42.85 3.67
4602 11641 4.581309 AATCCCACCCATGAGCTATATG 57.419 45.455 0.00 3.94 0.00 1.78
4615 11654 2.106683 CGTCGGAGCAAATCCCACC 61.107 63.158 0.00 0.00 46.50 4.61
4637 11676 5.357440 AGGGCCATAAGAATATCTCTCCAT 58.643 41.667 6.18 0.00 31.02 3.41
4704 11743 8.262715 TGCTTTCTCATTAACATATTTCGACA 57.737 30.769 0.00 0.00 0.00 4.35
4705 11744 7.374491 GCTGCTTTCTCATTAACATATTTCGAC 59.626 37.037 0.00 0.00 0.00 4.20
4706 11745 7.065683 TGCTGCTTTCTCATTAACATATTTCGA 59.934 33.333 0.00 0.00 0.00 3.71
4707 11746 7.188834 TGCTGCTTTCTCATTAACATATTTCG 58.811 34.615 0.00 0.00 0.00 3.46
4708 11747 8.915871 TTGCTGCTTTCTCATTAACATATTTC 57.084 30.769 0.00 0.00 0.00 2.17
4709 11748 9.880157 ATTTGCTGCTTTCTCATTAACATATTT 57.120 25.926 0.00 0.00 0.00 1.40
4710 11749 9.525409 GATTTGCTGCTTTCTCATTAACATATT 57.475 29.630 0.00 0.00 0.00 1.28
4711 11750 7.859377 CGATTTGCTGCTTTCTCATTAACATAT 59.141 33.333 0.00 0.00 0.00 1.78
4712 11751 7.188834 CGATTTGCTGCTTTCTCATTAACATA 58.811 34.615 0.00 0.00 0.00 2.29
4713 11752 6.032094 CGATTTGCTGCTTTCTCATTAACAT 58.968 36.000 0.00 0.00 0.00 2.71
4714 11753 5.393124 CGATTTGCTGCTTTCTCATTAACA 58.607 37.500 0.00 0.00 0.00 2.41
4715 11754 4.263911 GCGATTTGCTGCTTTCTCATTAAC 59.736 41.667 0.00 0.00 41.73 2.01
4716 11755 4.414852 GCGATTTGCTGCTTTCTCATTAA 58.585 39.130 0.00 0.00 41.73 1.40
4717 11756 4.019919 GCGATTTGCTGCTTTCTCATTA 57.980 40.909 0.00 0.00 41.73 1.90
4718 11757 2.872370 GCGATTTGCTGCTTTCTCATT 58.128 42.857 0.00 0.00 41.73 2.57
4719 11758 2.556534 GCGATTTGCTGCTTTCTCAT 57.443 45.000 0.00 0.00 41.73 2.90
4730 11769 3.873952 AGTTCTCCTCATTAGCGATTTGC 59.126 43.478 0.00 0.00 46.98 3.68
4731 11770 4.872691 ACAGTTCTCCTCATTAGCGATTTG 59.127 41.667 0.00 0.00 0.00 2.32
4732 11771 5.091261 ACAGTTCTCCTCATTAGCGATTT 57.909 39.130 0.00 0.00 0.00 2.17
4733 11772 4.744795 ACAGTTCTCCTCATTAGCGATT 57.255 40.909 0.00 0.00 0.00 3.34
4734 11773 7.526142 TTATACAGTTCTCCTCATTAGCGAT 57.474 36.000 0.00 0.00 0.00 4.58
4735 11774 6.954487 TTATACAGTTCTCCTCATTAGCGA 57.046 37.500 0.00 0.00 0.00 4.93
4736 11775 7.371159 TCATTATACAGTTCTCCTCATTAGCG 58.629 38.462 0.00 0.00 0.00 4.26
4737 11776 7.330700 GCTCATTATACAGTTCTCCTCATTAGC 59.669 40.741 0.00 0.00 0.00 3.09
4738 11777 8.363390 TGCTCATTATACAGTTCTCCTCATTAG 58.637 37.037 0.00 0.00 0.00 1.73
4739 11778 8.250143 TGCTCATTATACAGTTCTCCTCATTA 57.750 34.615 0.00 0.00 0.00 1.90
4740 11779 7.129457 TGCTCATTATACAGTTCTCCTCATT 57.871 36.000 0.00 0.00 0.00 2.57
4741 11780 6.737720 TGCTCATTATACAGTTCTCCTCAT 57.262 37.500 0.00 0.00 0.00 2.90
4742 11781 6.098838 ACATGCTCATTATACAGTTCTCCTCA 59.901 38.462 0.00 0.00 0.00 3.86
4743 11782 6.423302 CACATGCTCATTATACAGTTCTCCTC 59.577 42.308 0.00 0.00 0.00 3.71
4744 11783 6.126940 ACACATGCTCATTATACAGTTCTCCT 60.127 38.462 0.00 0.00 0.00 3.69
4745 11784 6.051717 ACACATGCTCATTATACAGTTCTCC 58.948 40.000 0.00 0.00 0.00 3.71
4746 11785 8.706936 CATACACATGCTCATTATACAGTTCTC 58.293 37.037 0.00 0.00 0.00 2.87
4747 11786 8.424133 TCATACACATGCTCATTATACAGTTCT 58.576 33.333 0.00 0.00 31.73 3.01
4748 11787 8.491152 GTCATACACATGCTCATTATACAGTTC 58.509 37.037 0.00 0.00 31.73 3.01
4749 11788 8.206867 AGTCATACACATGCTCATTATACAGTT 58.793 33.333 0.00 0.00 31.73 3.16
4750 11789 7.730084 AGTCATACACATGCTCATTATACAGT 58.270 34.615 0.00 0.00 31.73 3.55
4751 11790 8.599055 AAGTCATACACATGCTCATTATACAG 57.401 34.615 0.00 0.00 31.73 2.74
4755 11794 9.486497 CTCTTAAGTCATACACATGCTCATTAT 57.514 33.333 1.63 0.00 31.73 1.28
4756 11795 7.928167 CCTCTTAAGTCATACACATGCTCATTA 59.072 37.037 1.63 0.00 31.73 1.90
4757 11796 6.765036 CCTCTTAAGTCATACACATGCTCATT 59.235 38.462 1.63 0.00 31.73 2.57
4758 11797 6.098838 TCCTCTTAAGTCATACACATGCTCAT 59.901 38.462 1.63 0.00 31.73 2.90
4759 11798 5.422012 TCCTCTTAAGTCATACACATGCTCA 59.578 40.000 1.63 0.00 31.73 4.26
4760 11799 5.907207 TCCTCTTAAGTCATACACATGCTC 58.093 41.667 1.63 0.00 31.73 4.26
4761 11800 5.939764 TCCTCTTAAGTCATACACATGCT 57.060 39.130 1.63 0.00 31.73 3.79
4762 11801 7.383572 CAGTATCCTCTTAAGTCATACACATGC 59.616 40.741 16.56 0.00 31.73 4.06
4763 11802 8.633561 TCAGTATCCTCTTAAGTCATACACATG 58.366 37.037 16.56 0.00 0.00 3.21
4764 11803 8.768501 TCAGTATCCTCTTAAGTCATACACAT 57.231 34.615 16.56 2.42 0.00 3.21
4765 11804 8.053355 TCTCAGTATCCTCTTAAGTCATACACA 58.947 37.037 16.56 7.38 0.00 3.72
4766 11805 8.453238 TCTCAGTATCCTCTTAAGTCATACAC 57.547 38.462 16.56 6.13 0.00 2.90
4771 11810 9.733556 GAGATATCTCAGTATCCTCTTAAGTCA 57.266 37.037 24.93 0.00 42.42 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.