Multiple sequence alignment - TraesCS3A01G417300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G417300 chr3A 100.000 5984 0 0 1 5984 659557434 659551451 0.000000e+00 11051.0
1 TraesCS3A01G417300 chr3A 96.491 57 0 2 2922 2976 659554479 659554423 6.390000e-15 93.5
2 TraesCS3A01G417300 chr3A 96.491 57 0 2 2956 3012 659554513 659554459 6.390000e-15 93.5
3 TraesCS3A01G417300 chr3A 80.488 123 17 7 4404 4523 643184590 643184708 2.970000e-13 87.9
4 TraesCS3A01G417300 chr3A 89.655 58 4 2 4415 4471 383095472 383095528 8.320000e-09 73.1
5 TraesCS3A01G417300 chr3D 93.939 3712 133 43 1 3679 525474897 525471245 0.000000e+00 5524.0
6 TraesCS3A01G417300 chr3D 90.855 842 57 12 4707 5533 525470138 525469302 0.000000e+00 1110.0
7 TraesCS3A01G417300 chr3D 93.929 560 27 3 3857 4416 525470941 525470389 0.000000e+00 839.0
8 TraesCS3A01G417300 chr3D 89.823 226 19 3 5520 5743 525469271 525469048 2.730000e-73 287.0
9 TraesCS3A01G417300 chr3D 96.104 154 6 0 4557 4710 525470383 525470230 9.960000e-63 252.0
10 TraesCS3A01G417300 chr3D 79.661 236 21 7 5738 5949 525468546 525468314 1.740000e-30 145.0
11 TraesCS3A01G417300 chr3D 95.349 86 3 1 3762 3847 525471200 525471116 1.050000e-27 135.0
12 TraesCS3A01G417300 chr3D 89.855 69 3 4 4415 4481 225865078 225865144 1.070000e-12 86.1
13 TraesCS3A01G417300 chr3D 100.000 38 0 0 2586 2623 525472213 525472176 2.990000e-08 71.3
14 TraesCS3A01G417300 chr3B 94.751 2991 104 17 1 2976 693343681 693340729 0.000000e+00 4604.0
15 TraesCS3A01G417300 chr3B 86.566 1258 87 28 4557 5760 693339098 693337869 0.000000e+00 1312.0
16 TraesCS3A01G417300 chr3B 95.191 603 16 10 2956 3555 693340782 693340190 0.000000e+00 941.0
17 TraesCS3A01G417300 chr3B 89.839 620 37 12 3805 4413 693339702 693339098 0.000000e+00 773.0
18 TraesCS3A01G417300 chr3B 91.608 143 3 3 3541 3679 693340011 693339874 7.920000e-44 189.0
19 TraesCS3A01G417300 chr3B 96.364 55 2 0 5895 5949 693337182 693337128 2.300000e-14 91.6
20 TraesCS3A01G417300 chr3B 89.041 73 4 4 4412 4482 40487292 40487362 2.970000e-13 87.9
21 TraesCS3A01G417300 chr3B 79.839 124 9 9 4402 4523 479298366 479298475 6.430000e-10 76.8
22 TraesCS3A01G417300 chr3B 100.000 33 0 0 4499 4531 434051771 434051739 1.800000e-05 62.1
23 TraesCS3A01G417300 chr7D 87.500 72 6 3 4411 4481 283992348 283992279 4.970000e-11 80.5
24 TraesCS3A01G417300 chr2B 97.826 46 1 0 4407 4452 413455922 413455967 4.970000e-11 80.5
25 TraesCS3A01G417300 chr2B 85.915 71 6 4 4414 4481 102119433 102119364 8.320000e-09 73.1
26 TraesCS3A01G417300 chr4A 81.250 112 7 9 4415 4525 158858622 158858524 1.790000e-10 78.7
27 TraesCS3A01G417300 chr6A 100.000 29 0 0 4506 4534 484859523 484859495 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G417300 chr3A 659551451 659557434 5983 True 3746.000000 11051 97.660667 1 5984 3 chr3A.!!$R1 5983
1 TraesCS3A01G417300 chr3D 525468314 525474897 6583 True 1045.412500 5524 92.457500 1 5949 8 chr3D.!!$R1 5948
2 TraesCS3A01G417300 chr3B 693337128 693343681 6553 True 1318.433333 4604 92.386500 1 5949 6 chr3B.!!$R2 5948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.971447 ACCCCTAGTTCCGAGACAGC 60.971 60.000 0.00 0.0 0.00 4.40 F
1131 1150 1.225475 CGACTTCATGTTCGCGCAC 60.225 57.895 8.75 0.0 0.00 5.34 F
2684 2704 0.041386 AGCGATAGGATACCCTCCCC 59.959 60.000 0.00 0.0 46.27 4.81 F
2725 2761 0.804364 TGCACGGTGAAATGCATCTC 59.196 50.000 13.29 0.0 46.63 2.75 F
3178 3225 1.002430 TGGATGTTCCTGTCTGTCTGC 59.998 52.381 0.00 0.0 37.46 4.26 F
4526 5047 0.549950 TGGGACGGAGGGAGTACTAG 59.450 60.000 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 1219 0.966920 TGGAGGAGTTGGAAGACGAC 59.033 55.000 0.00 0.0 0.0 4.34 R
2728 2764 1.527311 GCACAGAACCTCGTTGAGAAC 59.473 52.381 0.00 0.0 0.0 3.01 R
4507 5028 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.0 0.0 4.37 R
4508 5029 0.550432 ACTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.0 0.0 4.46 R
4812 5442 1.867698 GCTAGATCCTGTTGCGCTCTC 60.868 57.143 9.73 0.0 0.0 3.20 R
5955 7745 0.031449 GAGACCTCGCCTGCTCATAC 59.969 60.000 0.00 0.0 0.0 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.985925 GCAAGCATTTCCAGAAAGAGTTG 59.014 43.478 0.00 3.67 33.32 3.16
57 58 4.000988 AGTTGAGAAACGCCACGAAATAT 58.999 39.130 0.00 0.00 0.00 1.28
260 261 3.359523 TGTCCCTCGTCCACGTCG 61.360 66.667 0.00 0.00 40.80 5.12
326 327 0.971447 ACCCCTAGTTCCGAGACAGC 60.971 60.000 0.00 0.00 0.00 4.40
327 328 1.677637 CCCCTAGTTCCGAGACAGCC 61.678 65.000 0.00 0.00 0.00 4.85
332 333 3.003173 TTCCGAGACAGCCCCTGG 61.003 66.667 0.00 0.00 35.51 4.45
367 368 4.570663 GCGTCCGTCGGATCTGGG 62.571 72.222 18.75 6.11 40.26 4.45
666 679 2.182030 GTGGTCGAAGCCCTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
869 882 2.259917 TGCCCTGTTCATCTTCAGAGA 58.740 47.619 0.00 0.00 36.09 3.10
870 883 2.235650 TGCCCTGTTCATCTTCAGAGAG 59.764 50.000 0.00 0.00 34.85 3.20
966 979 2.873245 GCACACACACATCACATCTCCT 60.873 50.000 0.00 0.00 0.00 3.69
1131 1150 1.225475 CGACTTCATGTTCGCGCAC 60.225 57.895 8.75 0.00 0.00 5.34
1200 1219 1.671901 GCTCCACCTTCTCCTCCTCG 61.672 65.000 0.00 0.00 0.00 4.63
1228 1247 2.217038 AACTCCTCCAGCGCCTTCA 61.217 57.895 2.29 0.00 0.00 3.02
1230 1249 3.672295 CTCCTCCAGCGCCTTCACC 62.672 68.421 2.29 0.00 0.00 4.02
1231 1250 4.785453 CCTCCAGCGCCTTCACCC 62.785 72.222 2.29 0.00 0.00 4.61
1350 1369 2.049156 CACCTGCTCGACTTCGCA 60.049 61.111 0.00 0.00 39.60 5.10
1362 1381 1.590238 GACTTCGCATCCATCAACGAG 59.410 52.381 0.00 0.00 35.74 4.18
1419 1438 1.070445 CGGGATGATGCTGGAGGAC 59.930 63.158 0.00 0.00 0.00 3.85
1440 1459 1.883544 CATCTCCGAGCAGCAGCAG 60.884 63.158 3.17 0.00 45.49 4.24
1441 1460 2.357575 ATCTCCGAGCAGCAGCAGT 61.358 57.895 3.17 0.00 45.49 4.40
1442 1461 1.897225 ATCTCCGAGCAGCAGCAGTT 61.897 55.000 3.17 0.00 45.49 3.16
1781 1800 2.815945 CCATGGATCAGGAGGCGCT 61.816 63.158 5.56 0.00 0.00 5.92
2355 2374 2.281484 GGCCTCTGGACGCAACAA 60.281 61.111 0.00 0.00 0.00 2.83
2365 2384 2.664851 CGCAACAAGCCGTCCAGA 60.665 61.111 0.00 0.00 41.38 3.86
2677 2697 2.355717 GCTGTCCAGCGATAGGATAC 57.644 55.000 3.14 0.00 45.29 2.24
2680 2700 1.147191 TGTCCAGCGATAGGATACCCT 59.853 52.381 0.00 0.00 46.62 4.34
2682 2702 1.187087 CCAGCGATAGGATACCCTCC 58.813 60.000 0.00 0.00 43.14 4.30
2684 2704 0.041386 AGCGATAGGATACCCTCCCC 59.959 60.000 0.00 0.00 46.27 4.81
2724 2760 2.945510 TGCACGGTGAAATGCATCT 58.054 47.368 13.29 0.00 46.63 2.90
2725 2761 0.804364 TGCACGGTGAAATGCATCTC 59.196 50.000 13.29 0.00 46.63 2.75
2726 2762 0.804364 GCACGGTGAAATGCATCTCA 59.196 50.000 13.29 0.00 41.65 3.27
2727 2763 1.199789 GCACGGTGAAATGCATCTCAA 59.800 47.619 13.29 0.00 41.65 3.02
2728 2764 2.730090 GCACGGTGAAATGCATCTCAAG 60.730 50.000 13.29 4.82 41.65 3.02
2744 2780 3.637229 TCTCAAGTTCTCAACGAGGTTCT 59.363 43.478 0.00 0.00 36.23 3.01
2805 2841 1.376037 CGGCAGGAGACAAGAACCC 60.376 63.158 0.00 0.00 0.00 4.11
2950 2991 7.706159 CACCACTTGCAATTTTCAGCTATATA 58.294 34.615 0.00 0.00 0.00 0.86
2951 2992 8.355169 CACCACTTGCAATTTTCAGCTATATAT 58.645 33.333 0.00 0.00 0.00 0.86
2952 2993 9.573166 ACCACTTGCAATTTTCAGCTATATATA 57.427 29.630 0.00 0.00 0.00 0.86
2959 3000 8.965172 GCAATTTTCAGCTATATATATGCATGC 58.035 33.333 11.82 11.82 0.00 4.06
2963 3004 7.974482 TTCAGCTATATATATGCATGCATCC 57.026 36.000 35.35 14.41 37.82 3.51
2964 3005 7.069877 TCAGCTATATATATGCATGCATCCA 57.930 36.000 35.35 23.89 37.82 3.41
2965 3006 6.932960 TCAGCTATATATATGCATGCATCCAC 59.067 38.462 35.35 16.90 37.82 4.02
2966 3007 6.935208 CAGCTATATATATGCATGCATCCACT 59.065 38.462 35.35 20.26 37.82 4.00
2967 3008 7.444487 CAGCTATATATATGCATGCATCCACTT 59.556 37.037 35.35 20.41 37.82 3.16
2968 3009 7.444487 AGCTATATATATGCATGCATCCACTTG 59.556 37.037 35.35 20.74 37.82 3.16
2969 3010 4.713824 ATATATGCATGCATCCACTTGC 57.286 40.909 35.35 0.00 43.07 4.01
2979 3020 2.414138 GCATCCACTTGCAATTTTCAGC 59.586 45.455 0.00 0.00 42.31 4.26
2980 3021 3.863400 GCATCCACTTGCAATTTTCAGCT 60.863 43.478 0.00 0.00 42.31 4.24
2981 3022 4.618927 GCATCCACTTGCAATTTTCAGCTA 60.619 41.667 0.00 0.00 42.31 3.32
2982 3023 5.657474 CATCCACTTGCAATTTTCAGCTAT 58.343 37.500 0.00 0.00 0.00 2.97
2983 3024 6.681120 GCATCCACTTGCAATTTTCAGCTATA 60.681 38.462 0.00 0.00 42.31 1.31
2984 3025 7.431249 CATCCACTTGCAATTTTCAGCTATAT 58.569 34.615 0.00 0.00 0.00 0.86
2985 3026 8.570488 CATCCACTTGCAATTTTCAGCTATATA 58.430 33.333 0.00 0.00 0.00 0.86
2986 3027 8.696043 TCCACTTGCAATTTTCAGCTATATAT 57.304 30.769 0.00 0.00 0.00 0.86
3079 3125 1.482182 TGCACCTGTATGACCTAGCTG 59.518 52.381 0.00 0.00 0.00 4.24
3104 3151 5.416952 TGAATGGATCTTCCTTTCTTTCTGC 59.583 40.000 17.83 0.00 45.64 4.26
3163 3210 5.554070 TGCAAGTGTATCTATCCATGGATG 58.446 41.667 33.41 23.04 36.17 3.51
3173 3220 3.572632 ATCCATGGATGTTCCTGTCTG 57.427 47.619 26.78 0.00 37.46 3.51
3178 3225 1.002430 TGGATGTTCCTGTCTGTCTGC 59.998 52.381 0.00 0.00 37.46 4.26
3179 3226 1.277557 GGATGTTCCTGTCTGTCTGCT 59.722 52.381 0.00 0.00 32.53 4.24
3180 3227 2.497675 GGATGTTCCTGTCTGTCTGCTA 59.502 50.000 0.00 0.00 32.53 3.49
3340 3387 1.149964 GAGCATGCGGTACCGGTAAC 61.150 60.000 33.98 20.27 40.19 2.50
3351 3398 3.371595 GGTACCGGTAACTAGTACTCCCA 60.372 52.174 22.79 0.00 41.30 4.37
3369 3416 3.580895 TCCCATCGATCGATTTTGGGATA 59.419 43.478 37.19 24.81 38.60 2.59
3647 3894 2.415491 CGCATCGTCTCTTGGTTCACTA 60.415 50.000 0.00 0.00 0.00 2.74
3717 3981 8.581253 TTCCTATTTTTCCATCTTCTTCTTCC 57.419 34.615 0.00 0.00 0.00 3.46
3718 3982 7.933223 TCCTATTTTTCCATCTTCTTCTTCCT 58.067 34.615 0.00 0.00 0.00 3.36
3719 3983 8.394040 TCCTATTTTTCCATCTTCTTCTTCCTT 58.606 33.333 0.00 0.00 0.00 3.36
3720 3984 8.681806 CCTATTTTTCCATCTTCTTCTTCCTTC 58.318 37.037 0.00 0.00 0.00 3.46
3721 3985 9.460019 CTATTTTTCCATCTTCTTCTTCCTTCT 57.540 33.333 0.00 0.00 0.00 2.85
3722 3986 8.718158 ATTTTTCCATCTTCTTCTTCCTTCTT 57.282 30.769 0.00 0.00 0.00 2.52
3723 3987 7.751768 TTTTCCATCTTCTTCTTCCTTCTTC 57.248 36.000 0.00 0.00 0.00 2.87
3724 3988 6.694445 TTCCATCTTCTTCTTCCTTCTTCT 57.306 37.500 0.00 0.00 0.00 2.85
3725 3989 6.694445 TCCATCTTCTTCTTCCTTCTTCTT 57.306 37.500 0.00 0.00 0.00 2.52
3726 3990 6.706295 TCCATCTTCTTCTTCCTTCTTCTTC 58.294 40.000 0.00 0.00 0.00 2.87
3727 3991 6.500049 TCCATCTTCTTCTTCCTTCTTCTTCT 59.500 38.462 0.00 0.00 0.00 2.85
3728 3992 7.017056 TCCATCTTCTTCTTCCTTCTTCTTCTT 59.983 37.037 0.00 0.00 0.00 2.52
3729 3993 7.334171 CCATCTTCTTCTTCCTTCTTCTTCTTC 59.666 40.741 0.00 0.00 0.00 2.87
3730 3994 7.610580 TCTTCTTCTTCCTTCTTCTTCTTCT 57.389 36.000 0.00 0.00 0.00 2.85
3731 3995 8.028652 TCTTCTTCTTCCTTCTTCTTCTTCTT 57.971 34.615 0.00 0.00 0.00 2.52
3732 3996 8.147704 TCTTCTTCTTCCTTCTTCTTCTTCTTC 58.852 37.037 0.00 0.00 0.00 2.87
3733 3997 7.610580 TCTTCTTCCTTCTTCTTCTTCTTCT 57.389 36.000 0.00 0.00 0.00 2.85
3734 3998 8.028652 TCTTCTTCCTTCTTCTTCTTCTTCTT 57.971 34.615 0.00 0.00 0.00 2.52
3735 3999 8.147704 TCTTCTTCCTTCTTCTTCTTCTTCTTC 58.852 37.037 0.00 0.00 0.00 2.87
3736 4000 7.610580 TCTTCCTTCTTCTTCTTCTTCTTCT 57.389 36.000 0.00 0.00 0.00 2.85
3737 4001 8.028652 TCTTCCTTCTTCTTCTTCTTCTTCTT 57.971 34.615 0.00 0.00 0.00 2.52
3738 4002 8.147704 TCTTCCTTCTTCTTCTTCTTCTTCTTC 58.852 37.037 0.00 0.00 0.00 2.87
3739 4003 7.610580 TCCTTCTTCTTCTTCTTCTTCTTCT 57.389 36.000 0.00 0.00 0.00 2.85
3740 4004 8.028652 TCCTTCTTCTTCTTCTTCTTCTTCTT 57.971 34.615 0.00 0.00 0.00 2.52
3741 4005 8.147704 TCCTTCTTCTTCTTCTTCTTCTTCTTC 58.852 37.037 0.00 0.00 0.00 2.87
3742 4006 8.150296 CCTTCTTCTTCTTCTTCTTCTTCTTCT 58.850 37.037 0.00 0.00 0.00 2.85
3743 4007 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3744 4008 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3745 4009 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3746 4010 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3747 4011 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3748 4012 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3749 4013 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3750 4014 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3751 4015 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3752 4016 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3753 4017 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3754 4018 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3755 4019 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3756 4020 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3757 4021 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3758 4022 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3759 4023 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3760 4024 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3761 4025 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3762 4026 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3763 4027 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3764 4028 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3765 4029 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3766 4030 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3767 4031 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3768 4032 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3769 4033 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
3770 4034 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
3771 4035 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
3829 4180 4.429108 GCTAGAGCTGTCAAAGTAAGGAG 58.571 47.826 0.00 0.00 38.21 3.69
3834 4185 6.357367 AGAGCTGTCAAAGTAAGGAGAAAAA 58.643 36.000 0.00 0.00 0.00 1.94
3883 4399 8.190122 TGATAACAAATTGCTGGTACAATGATC 58.810 33.333 0.00 0.00 40.12 2.92
3885 4401 4.699735 ACAAATTGCTGGTACAATGATCGA 59.300 37.500 0.00 0.00 40.12 3.59
3974 4491 3.181454 TGGTGAGAGAAGAGAACCAAACC 60.181 47.826 0.00 0.00 37.96 3.27
4039 4556 5.164100 CCTTGTGTTCACAAAACGTTTCTTG 60.164 40.000 15.01 12.39 0.00 3.02
4154 4671 3.277142 AATGTTCATACCCTTCCCGTC 57.723 47.619 0.00 0.00 0.00 4.79
4192 4709 9.857656 ATGAAATGATCTGTTTACATCCATAGT 57.142 29.630 0.00 0.00 0.00 2.12
4238 4755 6.883217 AGTTGATCAGTAGCTGTCATTTTGAT 59.117 34.615 0.00 0.00 32.61 2.57
4252 4769 7.860613 TGTCATTTTGATAGCGTTGGTATATG 58.139 34.615 0.00 0.00 0.00 1.78
4413 4934 6.509656 ACATCGCATTCATCTTGCAAAATAT 58.490 32.000 0.00 0.00 40.14 1.28
4416 4937 7.912949 TCGCATTCATCTTGCAAAATATTAC 57.087 32.000 0.00 0.00 40.14 1.89
4418 4939 7.857389 TCGCATTCATCTTGCAAAATATTACTC 59.143 33.333 0.00 0.00 40.14 2.59
4420 4941 7.383300 GCATTCATCTTGCAAAATATTACTCCC 59.617 37.037 0.00 0.00 39.90 4.30
4421 4942 8.636213 CATTCATCTTGCAAAATATTACTCCCT 58.364 33.333 0.00 0.00 0.00 4.20
4422 4943 7.807977 TCATCTTGCAAAATATTACTCCCTC 57.192 36.000 0.00 0.00 0.00 4.30
4423 4944 6.772716 TCATCTTGCAAAATATTACTCCCTCC 59.227 38.462 0.00 0.00 0.00 4.30
4424 4945 5.123227 TCTTGCAAAATATTACTCCCTCCG 58.877 41.667 0.00 0.00 0.00 4.63
4425 4946 4.497291 TGCAAAATATTACTCCCTCCGT 57.503 40.909 0.00 0.00 0.00 4.69
4426 4947 4.448210 TGCAAAATATTACTCCCTCCGTC 58.552 43.478 0.00 0.00 0.00 4.79
4427 4948 3.813724 GCAAAATATTACTCCCTCCGTCC 59.186 47.826 0.00 0.00 0.00 4.79
4428 4949 4.386711 CAAAATATTACTCCCTCCGTCCC 58.613 47.826 0.00 0.00 0.00 4.46
4429 4950 3.339713 AATATTACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
4430 4951 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
4431 4952 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4432 4953 1.961133 TTACTCCCTCCGTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
4433 4954 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
4434 4955 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
4435 4956 2.271777 ACTCCCTCCGTCCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
4436 4957 2.238898 ACTCCCTCCGTCCCAAATTAAG 59.761 50.000 0.00 0.00 0.00 1.85
4437 4958 2.238898 CTCCCTCCGTCCCAAATTAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4438 4959 2.026636 TCCCTCCGTCCCAAATTAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4439 4960 2.026636 CCCTCCGTCCCAAATTAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
4440 4961 3.007635 CCTCCGTCCCAAATTAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
4441 4962 3.307480 CCTCCGTCCCAAATTAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
4442 4963 3.933332 CTCCGTCCCAAATTAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
4443 4964 3.325425 TCCGTCCCAAATTAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
4444 4965 4.069304 CCGTCCCAAATTAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4445 4966 4.083484 CCGTCCCAAATTAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4446 4967 4.755123 CGTCCCAAATTAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4447 4968 5.238650 CGTCCCAAATTAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4448 4969 6.238648 CGTCCCAAATTAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4449 4970 6.918022 GTCCCAAATTAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
4450 4971 6.605594 TCCCAAATTAAGTGACTCAACTTTGT 59.394 34.615 8.71 0.00 40.77 2.83
4451 4972 7.776030 TCCCAAATTAAGTGACTCAACTTTGTA 59.224 33.333 8.71 0.00 40.77 2.41
4452 4973 8.076178 CCCAAATTAAGTGACTCAACTTTGTAG 58.924 37.037 8.71 0.00 40.77 2.74
4453 4974 8.836413 CCAAATTAAGTGACTCAACTTTGTAGA 58.164 33.333 8.71 0.00 40.77 2.59
4456 4977 9.614792 AATTAAGTGACTCAACTTTGTAGAAGT 57.385 29.630 0.00 0.00 40.77 3.01
4457 4978 9.614792 ATTAAGTGACTCAACTTTGTAGAAGTT 57.385 29.630 0.00 0.00 40.77 2.66
4468 4989 7.695869 ACTTTGTAGAAGTTGAGTTACGAAG 57.304 36.000 8.29 8.29 40.72 3.79
4469 4990 7.763071 AACTTTGTAGAAGTTGAGTTACGAAGT 59.237 33.333 9.29 9.29 45.69 3.01
4470 4991 7.763071 ACTTTGTAGAAGTTGAGTTACGAAGTT 59.237 33.333 9.29 0.00 43.28 2.66
4471 4992 7.459394 TTGTAGAAGTTGAGTTACGAAGTTG 57.541 36.000 0.00 0.00 37.78 3.16
4472 4993 6.567050 TGTAGAAGTTGAGTTACGAAGTTGT 58.433 36.000 0.00 0.00 37.78 3.32
4473 4994 5.968387 AGAAGTTGAGTTACGAAGTTGTG 57.032 39.130 0.00 0.00 37.78 3.33
4474 4995 5.416947 AGAAGTTGAGTTACGAAGTTGTGT 58.583 37.500 0.00 0.00 37.78 3.72
4475 4996 5.519206 AGAAGTTGAGTTACGAAGTTGTGTC 59.481 40.000 0.00 0.00 37.78 3.67
4476 4997 4.751060 AGTTGAGTTACGAAGTTGTGTCA 58.249 39.130 0.00 0.00 37.78 3.58
4477 4998 4.565564 AGTTGAGTTACGAAGTTGTGTCAC 59.434 41.667 0.00 0.00 37.78 3.67
4478 4999 4.380841 TGAGTTACGAAGTTGTGTCACT 57.619 40.909 4.27 0.00 37.78 3.41
4479 5000 4.751060 TGAGTTACGAAGTTGTGTCACTT 58.249 39.130 4.27 0.00 37.78 3.16
4480 5001 5.893687 TGAGTTACGAAGTTGTGTCACTTA 58.106 37.500 4.27 0.00 37.78 2.24
4481 5002 6.331845 TGAGTTACGAAGTTGTGTCACTTAA 58.668 36.000 4.27 0.00 37.78 1.85
4482 5003 6.254157 TGAGTTACGAAGTTGTGTCACTTAAC 59.746 38.462 4.27 1.39 37.78 2.01
4483 5004 6.335777 AGTTACGAAGTTGTGTCACTTAACT 58.664 36.000 4.27 3.81 37.78 2.24
4484 5005 6.474751 AGTTACGAAGTTGTGTCACTTAACTC 59.525 38.462 8.66 3.67 37.78 3.01
4485 5006 4.751060 ACGAAGTTGTGTCACTTAACTCA 58.249 39.130 8.66 0.00 37.78 3.41
4486 5007 5.172934 ACGAAGTTGTGTCACTTAACTCAA 58.827 37.500 8.66 0.00 37.78 3.02
4487 5008 5.063060 ACGAAGTTGTGTCACTTAACTCAAC 59.937 40.000 8.66 11.83 46.41 3.18
4492 5013 6.608610 GTTGTGTCACTTAACTCAACTTTGT 58.391 36.000 4.27 0.00 44.37 2.83
4493 5014 6.811253 TGTGTCACTTAACTCAACTTTGTT 57.189 33.333 4.27 0.00 0.00 2.83
4494 5015 6.607689 TGTGTCACTTAACTCAACTTTGTTG 58.392 36.000 4.27 4.25 0.00 3.33
4495 5016 6.428465 TGTGTCACTTAACTCAACTTTGTTGA 59.572 34.615 11.83 11.83 0.00 3.18
4508 5029 9.817365 CTCAACTTTGTTGAGTCACTTAATATG 57.183 33.333 24.21 3.70 40.63 1.78
4509 5030 8.783093 TCAACTTTGTTGAGTCACTTAATATGG 58.217 33.333 8.81 0.00 0.00 2.74
4510 5031 7.687941 ACTTTGTTGAGTCACTTAATATGGG 57.312 36.000 0.00 0.00 0.00 4.00
4511 5032 7.458397 ACTTTGTTGAGTCACTTAATATGGGA 58.542 34.615 0.00 0.00 0.00 4.37
4512 5033 7.390718 ACTTTGTTGAGTCACTTAATATGGGAC 59.609 37.037 0.00 0.76 0.00 4.46
4513 5034 5.416083 TGTTGAGTCACTTAATATGGGACG 58.584 41.667 0.00 0.00 33.84 4.79
4514 5035 4.665833 TGAGTCACTTAATATGGGACGG 57.334 45.455 3.37 0.00 33.84 4.79
4515 5036 4.283337 TGAGTCACTTAATATGGGACGGA 58.717 43.478 3.37 0.00 33.84 4.69
4516 5037 4.341235 TGAGTCACTTAATATGGGACGGAG 59.659 45.833 3.37 0.00 33.84 4.63
4517 5038 3.641906 AGTCACTTAATATGGGACGGAGG 59.358 47.826 3.37 0.00 33.84 4.30
4518 5039 2.969950 TCACTTAATATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4519 5040 2.969950 CACTTAATATGGGACGGAGGGA 59.030 50.000 0.00 0.00 0.00 4.20
4520 5041 3.006967 CACTTAATATGGGACGGAGGGAG 59.993 52.174 0.00 0.00 0.00 4.30
4521 5042 3.240302 CTTAATATGGGACGGAGGGAGT 58.760 50.000 0.00 0.00 0.00 3.85
4522 5043 4.140853 ACTTAATATGGGACGGAGGGAGTA 60.141 45.833 0.00 0.00 0.00 2.59
4523 5044 2.305858 ATATGGGACGGAGGGAGTAC 57.694 55.000 0.00 0.00 0.00 2.73
4524 5045 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
4525 5046 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
4526 5047 0.549950 TGGGACGGAGGGAGTACTAG 59.450 60.000 0.00 0.00 0.00 2.57
4527 5048 0.550432 GGGACGGAGGGAGTACTAGT 59.450 60.000 0.00 0.00 0.00 2.57
4528 5049 1.064091 GGGACGGAGGGAGTACTAGTT 60.064 57.143 0.00 0.00 0.00 2.24
4529 5050 2.622714 GGGACGGAGGGAGTACTAGTTT 60.623 54.545 0.00 0.00 0.00 2.66
4530 5051 3.095332 GGACGGAGGGAGTACTAGTTTT 58.905 50.000 0.00 0.00 0.00 2.43
4531 5052 4.273318 GGACGGAGGGAGTACTAGTTTTA 58.727 47.826 0.00 0.00 0.00 1.52
4532 5053 4.892345 GGACGGAGGGAGTACTAGTTTTAT 59.108 45.833 0.00 0.00 0.00 1.40
4533 5054 5.221204 GGACGGAGGGAGTACTAGTTTTATG 60.221 48.000 0.00 0.00 0.00 1.90
4534 5055 5.267587 ACGGAGGGAGTACTAGTTTTATGT 58.732 41.667 0.00 0.00 0.00 2.29
4535 5056 5.359292 ACGGAGGGAGTACTAGTTTTATGTC 59.641 44.000 0.00 0.00 0.00 3.06
4536 5057 5.359009 CGGAGGGAGTACTAGTTTTATGTCA 59.641 44.000 0.00 0.00 0.00 3.58
4537 5058 6.040616 CGGAGGGAGTACTAGTTTTATGTCAT 59.959 42.308 0.00 0.00 0.00 3.06
4538 5059 7.210873 GGAGGGAGTACTAGTTTTATGTCATG 58.789 42.308 0.00 0.00 0.00 3.07
4539 5060 6.583562 AGGGAGTACTAGTTTTATGTCATGC 58.416 40.000 0.00 0.00 0.00 4.06
4540 5061 6.156256 AGGGAGTACTAGTTTTATGTCATGCA 59.844 38.462 0.00 0.00 0.00 3.96
4541 5062 6.992715 GGGAGTACTAGTTTTATGTCATGCAT 59.007 38.462 0.00 0.00 41.42 3.96
4542 5063 7.499232 GGGAGTACTAGTTTTATGTCATGCATT 59.501 37.037 0.00 0.00 38.94 3.56
4543 5064 8.893727 GGAGTACTAGTTTTATGTCATGCATTT 58.106 33.333 0.00 0.00 38.94 2.32
4736 5366 5.668866 GCAGAACTATCTTTGTACTTGTGCG 60.669 44.000 0.00 0.00 32.03 5.34
4751 5381 6.509317 ACTTGTGCGTTTGAATTAATTGTG 57.491 33.333 5.17 0.00 0.00 3.33
4812 5442 2.508439 ATACGCGGCGTGAAGGTG 60.508 61.111 35.53 1.68 41.39 4.00
4863 5493 0.034670 ATGCCAGTCCAGAGAAAGGC 60.035 55.000 0.00 0.00 42.03 4.35
4908 5538 3.793144 GAAGACGGCGGCTGCAAG 61.793 66.667 19.84 15.15 45.35 4.01
4915 5545 3.808656 GCGGCTGCAAGGAGAAGC 61.809 66.667 14.08 0.00 42.15 3.86
5022 5654 2.168521 TCCGATCCACCATTGAAGACTC 59.831 50.000 0.00 0.00 0.00 3.36
5023 5655 2.093500 CCGATCCACCATTGAAGACTCA 60.093 50.000 0.00 0.00 0.00 3.41
5024 5656 3.193263 CGATCCACCATTGAAGACTCAG 58.807 50.000 0.00 0.00 31.69 3.35
5045 5680 5.535406 TCAGTTAGCTAGCTCAAGTATACCC 59.465 44.000 23.26 0.00 0.00 3.69
5264 5907 3.857157 TGTCCTCCTAACAAGCAAACT 57.143 42.857 0.00 0.00 0.00 2.66
5265 5908 4.164843 TGTCCTCCTAACAAGCAAACTT 57.835 40.909 0.00 0.00 36.19 2.66
5278 5922 6.354130 ACAAGCAAACTTTCCTAGTTAGTCA 58.646 36.000 0.00 0.00 46.34 3.41
5393 6037 7.148120 CCTTATTGGCCTCATAGCAATAATGAG 60.148 40.741 3.32 6.18 46.55 2.90
5402 6046 5.295045 TCATAGCAATAATGAGCGGCATATG 59.705 40.000 1.45 0.00 35.78 1.78
5428 6073 7.363530 GGACTATTTTGGCCTAAAAAGGGTAAG 60.364 40.741 16.33 7.89 41.29 2.34
5433 6078 5.587760 TGGCCTAAAAAGGGTAAGTACTT 57.412 39.130 13.68 13.68 0.00 2.24
5456 6101 3.073209 ACTCTAGTCATATGGCCTCGAGA 59.927 47.826 15.71 12.25 0.00 4.04
5457 6102 3.680490 TCTAGTCATATGGCCTCGAGAG 58.320 50.000 15.71 5.19 0.00 3.20
5458 6103 2.373335 AGTCATATGGCCTCGAGAGT 57.627 50.000 15.71 0.00 0.00 3.24
5459 6104 2.672098 AGTCATATGGCCTCGAGAGTT 58.328 47.619 15.71 0.00 0.00 3.01
5460 6105 2.363680 AGTCATATGGCCTCGAGAGTTG 59.636 50.000 15.71 0.00 0.00 3.16
5461 6106 1.069204 TCATATGGCCTCGAGAGTTGC 59.931 52.381 15.71 8.54 0.00 4.17
5467 6114 1.168714 GCCTCGAGAGTTGCCATTTT 58.831 50.000 15.71 0.00 0.00 1.82
5469 6116 2.669391 GCCTCGAGAGTTGCCATTTTTG 60.669 50.000 15.71 0.00 0.00 2.44
5474 6140 3.157087 GAGAGTTGCCATTTTTGGAGGA 58.843 45.455 0.00 0.00 0.00 3.71
5475 6141 3.573967 GAGAGTTGCCATTTTTGGAGGAA 59.426 43.478 0.00 0.00 0.00 3.36
5512 6181 0.318441 CAGACGCTCACTTGGAAGGA 59.682 55.000 0.00 0.00 0.00 3.36
5550 6268 1.441729 CCTTTCGAGCGGCCATCTA 59.558 57.895 2.24 0.00 0.00 1.98
5555 6273 1.658717 CGAGCGGCCATCTACTTCG 60.659 63.158 2.24 0.00 0.00 3.79
5585 6303 4.107051 GCACACGGCCAGACATGC 62.107 66.667 2.24 0.53 36.11 4.06
5586 6304 2.669229 CACACGGCCAGACATGCA 60.669 61.111 2.24 0.00 0.00 3.96
5587 6305 2.042259 CACACGGCCAGACATGCAT 61.042 57.895 2.24 0.00 0.00 3.96
5634 6352 1.002544 GCTATCATGTGCCTACTCCCC 59.997 57.143 0.00 0.00 0.00 4.81
5639 6357 1.635817 ATGTGCCTACTCCCCGCAAT 61.636 55.000 0.00 0.00 33.57 3.56
5701 6419 1.228003 ACCGTCGCCATGGTTGAAA 60.228 52.632 14.67 0.00 39.05 2.69
5718 6439 5.891451 GTTGAAAAGCTTACAACCTTCACT 58.109 37.500 25.67 0.00 38.20 3.41
5719 6440 6.330278 GTTGAAAAGCTTACAACCTTCACTT 58.670 36.000 25.67 5.10 38.20 3.16
5720 6441 6.131544 TGAAAAGCTTACAACCTTCACTTC 57.868 37.500 0.00 0.00 0.00 3.01
5756 7122 0.531200 CCGTAGCGACTTTCTCCCTT 59.469 55.000 0.00 0.00 0.00 3.95
5760 7126 2.464157 AGCGACTTTCTCCCTTTCTG 57.536 50.000 0.00 0.00 0.00 3.02
5780 7146 2.124320 GCCATGCGCTTCCCCTAA 60.124 61.111 9.73 0.00 0.00 2.69
5788 7154 0.248289 CGCTTCCCCTAAAGTCGGAA 59.752 55.000 0.00 0.00 34.52 4.30
5797 7163 0.034863 TAAAGTCGGAATGGGTGCCC 60.035 55.000 0.00 0.00 0.00 5.36
5798 7164 2.781431 AAAGTCGGAATGGGTGCCCC 62.781 60.000 4.59 3.42 45.71 5.80
5799 7165 3.728373 GTCGGAATGGGTGCCCCT 61.728 66.667 11.10 0.00 45.70 4.79
5802 7168 2.983879 CGGAATGGGTGCCCCTTCT 61.984 63.158 19.75 0.00 45.70 2.85
5803 7169 1.388133 GGAATGGGTGCCCCTTCTT 59.612 57.895 19.75 3.93 45.70 2.52
5804 7170 0.972471 GGAATGGGTGCCCCTTCTTG 60.972 60.000 19.75 0.00 45.70 3.02
5805 7171 0.039618 GAATGGGTGCCCCTTCTTGA 59.960 55.000 15.23 0.00 45.70 3.02
5806 7172 0.486879 AATGGGTGCCCCTTCTTGAA 59.513 50.000 11.10 0.00 45.70 2.69
5807 7173 0.040204 ATGGGTGCCCCTTCTTGAAG 59.960 55.000 11.10 3.55 45.70 3.02
5808 7174 1.304464 GGGTGCCCCTTCTTGAAGG 60.304 63.158 19.53 19.53 41.34 3.46
5809 7175 1.767692 GGTGCCCCTTCTTGAAGGA 59.232 57.895 25.99 7.87 42.62 3.36
5810 7176 0.609406 GGTGCCCCTTCTTGAAGGAC 60.609 60.000 25.99 18.60 42.62 3.85
5811 7177 0.110486 GTGCCCCTTCTTGAAGGACA 59.890 55.000 25.99 20.48 42.62 4.02
5813 7179 0.322906 GCCCCTTCTTGAAGGACAGG 60.323 60.000 25.99 19.87 42.62 4.00
5815 7181 1.362224 CCCTTCTTGAAGGACAGGGA 58.638 55.000 25.99 0.00 42.62 4.20
5825 7207 0.907230 AGGACAGGGAGAAGTGGAGC 60.907 60.000 0.00 0.00 0.00 4.70
5861 7249 1.039785 CGCTGAGGAGGAGGATCACA 61.040 60.000 0.00 0.00 36.25 3.58
5885 7273 3.370231 TGCTAGACGTGCGCAGGA 61.370 61.111 34.34 13.11 0.00 3.86
5949 7739 7.069826 ACAAGACATTCCATTATTTGGGGTATG 59.930 37.037 0.00 0.00 46.45 2.39
5950 7740 6.921412 AGACATTCCATTATTTGGGGTATGA 58.079 36.000 0.00 0.00 46.45 2.15
5951 7741 7.538402 AGACATTCCATTATTTGGGGTATGAT 58.462 34.615 0.00 0.00 46.45 2.45
5952 7742 7.671398 AGACATTCCATTATTTGGGGTATGATC 59.329 37.037 0.00 0.00 46.45 2.92
5953 7743 6.725834 ACATTCCATTATTTGGGGTATGATCC 59.274 38.462 0.00 0.00 46.45 3.36
5954 7744 5.269554 TCCATTATTTGGGGTATGATCCC 57.730 43.478 0.00 0.00 46.45 3.85
5962 7752 2.674796 GGGTATGATCCCGTATGAGC 57.325 55.000 0.00 0.00 37.93 4.26
5963 7753 1.899814 GGGTATGATCCCGTATGAGCA 59.100 52.381 0.00 0.00 37.93 4.26
5964 7754 2.093973 GGGTATGATCCCGTATGAGCAG 60.094 54.545 0.00 0.00 37.93 4.24
5965 7755 2.093973 GGTATGATCCCGTATGAGCAGG 60.094 54.545 0.00 0.00 33.61 4.85
5966 7756 0.322975 ATGATCCCGTATGAGCAGGC 59.677 55.000 0.00 0.00 33.61 4.85
5967 7757 1.373497 GATCCCGTATGAGCAGGCG 60.373 63.158 0.00 0.00 0.00 5.52
5968 7758 1.806461 GATCCCGTATGAGCAGGCGA 61.806 60.000 0.00 0.00 0.00 5.54
5969 7759 1.810606 ATCCCGTATGAGCAGGCGAG 61.811 60.000 0.00 0.00 0.00 5.03
5970 7760 2.028190 CCGTATGAGCAGGCGAGG 59.972 66.667 0.00 0.00 0.00 4.63
5971 7761 2.786495 CCGTATGAGCAGGCGAGGT 61.786 63.158 0.00 0.00 0.00 3.85
5972 7762 1.299468 CGTATGAGCAGGCGAGGTC 60.299 63.158 5.44 5.44 36.59 3.85
5973 7763 1.729470 CGTATGAGCAGGCGAGGTCT 61.729 60.000 12.12 2.94 36.97 3.85
5974 7764 0.031449 GTATGAGCAGGCGAGGTCTC 59.969 60.000 12.12 1.86 36.97 3.36
5983 7773 4.361827 CGAGGTCTCGTTACGCAG 57.638 61.111 11.76 0.00 46.99 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.930634 ACTCTTTCTGGAAATGCTTGC 57.069 42.857 0.00 0.00 0.00 4.01
39 40 4.336532 ACAATATTTCGTGGCGTTTCTC 57.663 40.909 0.00 0.00 0.00 2.87
57 58 0.878416 GTTGCGGCCATAGTCAACAA 59.122 50.000 2.24 0.00 38.78 2.83
326 327 4.722700 CCCAAGCGACACCAGGGG 62.723 72.222 0.00 0.00 35.83 4.79
327 328 3.190738 TTCCCAAGCGACACCAGGG 62.191 63.158 0.00 0.00 40.98 4.45
349 350 3.822192 CCAGATCCGACGGACGCA 61.822 66.667 21.02 0.00 41.07 5.24
367 368 4.554036 GTCCGATGGAGCCAGCCC 62.554 72.222 0.00 0.00 29.39 5.19
370 371 4.899239 GCCGTCCGATGGAGCCAG 62.899 72.222 11.11 0.00 29.39 4.85
515 516 0.655733 CGTGATAATGTTGACCGCCC 59.344 55.000 0.00 0.00 0.00 6.13
516 517 0.027586 GCGTGATAATGTTGACCGCC 59.972 55.000 0.00 0.00 34.06 6.13
666 679 4.785453 CCGGGACCCAGCTTCAGC 62.785 72.222 12.15 0.00 42.49 4.26
724 737 2.203070 CTTTCCATCCCCCGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
818 831 2.291457 GAAGGGAGAGAGTGCGGCTC 62.291 65.000 0.00 0.00 44.45 4.70
869 882 2.535331 GGGGGTGGGTGCAGTTACT 61.535 63.158 0.00 0.00 0.00 2.24
870 883 1.202769 TAGGGGGTGGGTGCAGTTAC 61.203 60.000 0.00 0.00 0.00 2.50
907 920 4.673298 TGTGTGTAGGTGCGGCCG 62.673 66.667 24.05 24.05 43.70 6.13
966 979 2.044848 AGAGCGAGAGGGCGAGAA 60.045 61.111 0.00 0.00 38.18 2.87
1131 1150 2.842936 AGGGCCGGGAAGGTATCG 60.843 66.667 2.18 0.00 43.70 2.92
1200 1219 0.966920 TGGAGGAGTTGGAAGACGAC 59.033 55.000 0.00 0.00 0.00 4.34
1419 1438 1.588403 CTGCTGCTCGGAGATGACG 60.588 63.158 9.69 0.00 33.89 4.35
1494 1513 0.979709 CATCCTCTCCTCCACCAGCA 60.980 60.000 0.00 0.00 0.00 4.41
1562 1581 1.339438 TGAGCCACTCCATGAAGAAGC 60.339 52.381 0.00 0.00 0.00 3.86
1563 1582 2.775911 TGAGCCACTCCATGAAGAAG 57.224 50.000 0.00 0.00 0.00 2.85
1872 1891 1.381327 CGAGAAGGCCTGGTAGGGA 60.381 63.158 5.69 0.00 35.37 4.20
2692 2712 2.018544 GTGCAGGTAAACACACGCA 58.981 52.632 0.00 0.00 36.77 5.24
2717 2753 3.930336 TCGTTGAGAACTTGAGATGCAT 58.070 40.909 0.00 0.00 0.00 3.96
2721 2757 4.282195 AGAACCTCGTTGAGAACTTGAGAT 59.718 41.667 0.00 0.00 0.00 2.75
2723 2759 3.738282 CAGAACCTCGTTGAGAACTTGAG 59.262 47.826 0.00 0.00 0.00 3.02
2724 2760 3.132289 ACAGAACCTCGTTGAGAACTTGA 59.868 43.478 0.00 0.00 0.00 3.02
2725 2761 3.246226 CACAGAACCTCGTTGAGAACTTG 59.754 47.826 0.00 0.00 0.00 3.16
2726 2762 3.458189 CACAGAACCTCGTTGAGAACTT 58.542 45.455 0.00 0.00 0.00 2.66
2727 2763 2.803492 GCACAGAACCTCGTTGAGAACT 60.803 50.000 0.00 0.00 0.00 3.01
2728 2764 1.527311 GCACAGAACCTCGTTGAGAAC 59.473 52.381 0.00 0.00 0.00 3.01
2958 2999 2.414138 GCTGAAAATTGCAAGTGGATGC 59.586 45.455 4.94 2.48 46.58 3.91
2959 3000 3.921677 AGCTGAAAATTGCAAGTGGATG 58.078 40.909 4.94 0.00 0.00 3.51
2960 3001 5.927281 ATAGCTGAAAATTGCAAGTGGAT 57.073 34.783 4.94 0.00 0.00 3.41
2961 3002 8.696043 ATATATAGCTGAAAATTGCAAGTGGA 57.304 30.769 4.94 0.00 0.00 4.02
2968 3009 8.965172 GCATGCATATATATAGCTGAAAATTGC 58.035 33.333 14.21 8.24 0.00 3.56
2972 3013 8.843262 GGATGCATGCATATATATAGCTGAAAA 58.157 33.333 32.27 0.00 36.70 2.29
2973 3014 7.994334 TGGATGCATGCATATATATAGCTGAAA 59.006 33.333 32.27 0.00 36.70 2.69
2974 3015 7.443272 GTGGATGCATGCATATATATAGCTGAA 59.557 37.037 32.27 0.00 36.70 3.02
2975 3016 6.932960 GTGGATGCATGCATATATATAGCTGA 59.067 38.462 32.27 6.55 36.70 4.26
2976 3017 6.935208 AGTGGATGCATGCATATATATAGCTG 59.065 38.462 32.27 11.65 36.70 4.24
2977 3018 7.075851 AGTGGATGCATGCATATATATAGCT 57.924 36.000 32.27 17.52 36.70 3.32
2978 3019 7.582352 CAAGTGGATGCATGCATATATATAGC 58.418 38.462 32.27 16.96 36.70 2.97
2979 3020 7.582352 GCAAGTGGATGCATGCATATATATAG 58.418 38.462 32.27 19.41 45.70 1.31
2980 3021 7.500720 GCAAGTGGATGCATGCATATATATA 57.499 36.000 32.27 12.56 45.70 0.86
2981 3022 6.387041 GCAAGTGGATGCATGCATATATAT 57.613 37.500 32.27 16.23 45.70 0.86
2982 3023 5.823209 GCAAGTGGATGCATGCATATATA 57.177 39.130 32.27 15.95 45.70 0.86
2983 3024 4.713824 GCAAGTGGATGCATGCATATAT 57.286 40.909 32.27 12.68 45.70 0.86
3079 3125 6.624642 GCAGAAAGAAAGGAAGATCCATTCAC 60.625 42.308 14.63 7.31 44.33 3.18
3104 3151 8.861033 TCAAGAAGAAATCAACACAAAGATTG 57.139 30.769 0.00 0.00 34.86 2.67
3163 3210 1.548269 AGCTAGCAGACAGACAGGAAC 59.452 52.381 18.83 0.00 0.00 3.62
3173 3220 1.400888 CCGATCGATCAGCTAGCAGAC 60.401 57.143 24.40 8.36 0.00 3.51
3178 3225 1.413382 GCAACCGATCGATCAGCTAG 58.587 55.000 24.40 11.04 0.00 3.42
3179 3226 0.317854 CGCAACCGATCGATCAGCTA 60.318 55.000 24.40 0.00 36.29 3.32
3180 3227 1.589993 CGCAACCGATCGATCAGCT 60.590 57.895 24.40 2.21 36.29 4.24
3340 3387 5.630661 AAATCGATCGATGGGAGTACTAG 57.369 43.478 29.99 0.00 34.70 2.57
3538 3588 3.747708 GCTACTATTTGGCTCCCGGATTT 60.748 47.826 0.73 0.00 0.00 2.17
3647 3894 5.011125 ACTGTGTAGAGTGATGCTAACAAGT 59.989 40.000 0.00 0.00 0.00 3.16
3717 3981 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3718 3982 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3719 3983 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3720 3984 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3721 3985 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3722 3986 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3723 3987 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3724 3988 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3725 3989 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3726 3990 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3727 3991 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3728 3992 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3729 3993 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3730 3994 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3731 3995 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3732 3996 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3733 3997 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3734 3998 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3735 3999 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3736 4000 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3737 4001 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3738 4002 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3739 4003 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3740 4004 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3741 4005 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3742 4006 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3743 4007 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3744 4008 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3745 4009 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3746 4010 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3747 4011 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3748 4012 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3749 4013 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3750 4014 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3751 4015 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3752 4016 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
3753 4017 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3754 4018 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
3755 4019 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
3756 4020 7.930865 TGGAAGAAGAAGAAGAAGAAGAAGAAG 59.069 37.037 0.00 0.00 0.00 2.85
3757 4021 7.796054 TGGAAGAAGAAGAAGAAGAAGAAGAA 58.204 34.615 0.00 0.00 0.00 2.52
3758 4022 7.366847 TGGAAGAAGAAGAAGAAGAAGAAGA 57.633 36.000 0.00 0.00 0.00 2.87
3759 4023 8.443953 TTTGGAAGAAGAAGAAGAAGAAGAAG 57.556 34.615 0.00 0.00 0.00 2.85
3760 4024 8.049721 ACTTTGGAAGAAGAAGAAGAAGAAGAA 58.950 33.333 0.00 0.00 0.00 2.52
3761 4025 7.497249 CACTTTGGAAGAAGAAGAAGAAGAAGA 59.503 37.037 0.00 0.00 0.00 2.87
3762 4026 7.281999 ACACTTTGGAAGAAGAAGAAGAAGAAG 59.718 37.037 0.00 0.00 0.00 2.85
3763 4027 7.112779 ACACTTTGGAAGAAGAAGAAGAAGAA 58.887 34.615 0.00 0.00 0.00 2.52
3764 4028 6.653989 ACACTTTGGAAGAAGAAGAAGAAGA 58.346 36.000 0.00 0.00 0.00 2.87
3765 4029 6.934048 ACACTTTGGAAGAAGAAGAAGAAG 57.066 37.500 0.00 0.00 0.00 2.85
3766 4030 8.210946 TGATACACTTTGGAAGAAGAAGAAGAA 58.789 33.333 0.00 0.00 0.00 2.52
3767 4031 7.735917 TGATACACTTTGGAAGAAGAAGAAGA 58.264 34.615 0.00 0.00 0.00 2.87
3768 4032 7.969536 TGATACACTTTGGAAGAAGAAGAAG 57.030 36.000 0.00 0.00 0.00 2.85
3770 4034 9.605275 CATATGATACACTTTGGAAGAAGAAGA 57.395 33.333 0.00 0.00 0.00 2.87
3771 4035 9.388506 ACATATGATACACTTTGGAAGAAGAAG 57.611 33.333 10.38 0.00 0.00 2.85
3847 4198 9.241317 CCAGCAATTTGTTATCATACAGAATTC 57.759 33.333 0.00 0.00 0.00 2.17
3848 4199 8.752187 ACCAGCAATTTGTTATCATACAGAATT 58.248 29.630 0.00 0.00 0.00 2.17
3849 4200 8.297470 ACCAGCAATTTGTTATCATACAGAAT 57.703 30.769 0.00 0.00 0.00 2.40
3850 4201 7.701539 ACCAGCAATTTGTTATCATACAGAA 57.298 32.000 0.00 0.00 0.00 3.02
3851 4202 7.826744 TGTACCAGCAATTTGTTATCATACAGA 59.173 33.333 0.00 0.00 0.00 3.41
3852 4203 7.984391 TGTACCAGCAATTTGTTATCATACAG 58.016 34.615 0.00 0.00 0.00 2.74
3855 4371 9.183368 TCATTGTACCAGCAATTTGTTATCATA 57.817 29.630 0.00 0.00 37.00 2.15
3883 4399 4.356289 TGCATGCATGAAAATCAAGATCG 58.644 39.130 30.64 0.00 0.00 3.69
3885 4401 5.592104 TCTGCATGCATGAAAATCAAGAT 57.408 34.783 30.64 0.00 0.00 2.40
3974 4491 5.782047 TGGTTTCAAAATTGTATCAGGCAG 58.218 37.500 0.00 0.00 0.00 4.85
4039 4556 3.467803 AGTCACCTACAAGTTCAAGCAC 58.532 45.455 0.00 0.00 0.00 4.40
4192 4709 5.527443 ACTGGTCAGTTTGCAACATGCATA 61.527 41.667 5.79 0.00 43.47 3.14
4193 4710 4.812368 ACTGGTCAGTTTGCAACATGCAT 61.812 43.478 5.79 0.00 43.47 3.96
4218 4735 5.464722 CGCTATCAAAATGACAGCTACTGAT 59.535 40.000 8.77 0.00 44.26 2.90
4273 4790 3.396276 TCCGCCTTATATTTTGGGATGGA 59.604 43.478 0.00 0.00 0.00 3.41
4276 4793 9.936329 ATAATAATCCGCCTTATATTTTGGGAT 57.064 29.630 0.00 0.00 34.42 3.85
4328 4845 9.974980 TTACGCACATATATACAAGAGATCAAA 57.025 29.630 0.00 0.00 0.00 2.69
4413 4934 1.961133 ATTTGGGACGGAGGGAGTAA 58.039 50.000 0.00 0.00 0.00 2.24
4416 4937 2.238898 ACTTAATTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4418 4939 2.026636 TCACTTAATTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
4420 4941 3.933332 GAGTCACTTAATTTGGGACGGAG 59.067 47.826 7.56 0.00 33.84 4.63
4421 4942 3.325425 TGAGTCACTTAATTTGGGACGGA 59.675 43.478 7.56 0.00 33.84 4.69
4422 4943 3.670625 TGAGTCACTTAATTTGGGACGG 58.329 45.455 7.56 0.00 33.84 4.79
4423 4944 4.755123 AGTTGAGTCACTTAATTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
4424 4945 6.635030 AAGTTGAGTCACTTAATTTGGGAC 57.365 37.500 0.00 5.66 35.10 4.46
4425 4946 6.605594 ACAAAGTTGAGTCACTTAATTTGGGA 59.394 34.615 16.35 0.00 35.87 4.37
4426 4947 6.805713 ACAAAGTTGAGTCACTTAATTTGGG 58.194 36.000 16.35 4.33 35.87 4.12
4427 4948 8.836413 TCTACAAAGTTGAGTCACTTAATTTGG 58.164 33.333 16.35 5.04 35.87 3.28
4430 4951 9.614792 ACTTCTACAAAGTTGAGTCACTTAATT 57.385 29.630 0.00 0.00 35.87 1.40
4431 4952 9.614792 AACTTCTACAAAGTTGAGTCACTTAAT 57.385 29.630 2.55 0.00 38.88 1.40
4443 4964 7.763071 ACTTCGTAACTCAACTTCTACAAAGTT 59.237 33.333 0.00 0.00 40.80 2.66
4444 4965 7.263496 ACTTCGTAACTCAACTTCTACAAAGT 58.737 34.615 0.00 0.00 0.00 2.66
4445 4966 7.695869 ACTTCGTAACTCAACTTCTACAAAG 57.304 36.000 0.00 0.00 0.00 2.77
4446 4967 7.546667 ACAACTTCGTAACTCAACTTCTACAAA 59.453 33.333 0.00 0.00 0.00 2.83
4447 4968 7.009815 CACAACTTCGTAACTCAACTTCTACAA 59.990 37.037 0.00 0.00 0.00 2.41
4448 4969 6.474427 CACAACTTCGTAACTCAACTTCTACA 59.526 38.462 0.00 0.00 0.00 2.74
4449 4970 6.474751 ACACAACTTCGTAACTCAACTTCTAC 59.525 38.462 0.00 0.00 0.00 2.59
4450 4971 6.567050 ACACAACTTCGTAACTCAACTTCTA 58.433 36.000 0.00 0.00 0.00 2.10
4451 4972 5.416947 ACACAACTTCGTAACTCAACTTCT 58.583 37.500 0.00 0.00 0.00 2.85
4452 4973 5.290158 TGACACAACTTCGTAACTCAACTTC 59.710 40.000 0.00 0.00 0.00 3.01
4453 4974 5.063060 GTGACACAACTTCGTAACTCAACTT 59.937 40.000 0.00 0.00 0.00 2.66
4454 4975 4.565564 GTGACACAACTTCGTAACTCAACT 59.434 41.667 0.00 0.00 0.00 3.16
4455 4976 4.565564 AGTGACACAACTTCGTAACTCAAC 59.434 41.667 8.59 0.00 0.00 3.18
4456 4977 4.751060 AGTGACACAACTTCGTAACTCAA 58.249 39.130 8.59 0.00 0.00 3.02
4457 4978 4.380841 AGTGACACAACTTCGTAACTCA 57.619 40.909 8.59 0.00 0.00 3.41
4458 4979 6.474751 AGTTAAGTGACACAACTTCGTAACTC 59.525 38.462 8.59 0.00 40.77 3.01
4459 4980 6.335777 AGTTAAGTGACACAACTTCGTAACT 58.664 36.000 8.59 6.74 40.77 2.24
4460 4981 6.254157 TGAGTTAAGTGACACAACTTCGTAAC 59.746 38.462 8.59 4.83 40.77 2.50
4461 4982 6.331845 TGAGTTAAGTGACACAACTTCGTAA 58.668 36.000 8.59 0.00 40.77 3.18
4462 4983 5.893687 TGAGTTAAGTGACACAACTTCGTA 58.106 37.500 8.59 0.00 40.77 3.43
4463 4984 4.751060 TGAGTTAAGTGACACAACTTCGT 58.249 39.130 8.59 0.00 40.77 3.85
4464 4985 5.490213 GTTGAGTTAAGTGACACAACTTCG 58.510 41.667 8.59 0.00 43.33 3.79
4468 4989 6.608610 ACAAAGTTGAGTTAAGTGACACAAC 58.391 36.000 8.59 4.56 45.43 3.32
4469 4990 6.811253 ACAAAGTTGAGTTAAGTGACACAA 57.189 33.333 8.59 0.00 0.00 3.33
4470 4991 6.428465 TCAACAAAGTTGAGTTAAGTGACACA 59.572 34.615 8.59 0.00 0.00 3.72
4471 4992 6.837992 TCAACAAAGTTGAGTTAAGTGACAC 58.162 36.000 8.39 0.00 0.00 3.67
4472 4993 7.072177 CTCAACAAAGTTGAGTTAAGTGACA 57.928 36.000 24.47 0.00 40.63 3.58
4483 5004 8.783093 CCATATTAAGTGACTCAACAAAGTTGA 58.217 33.333 11.59 11.59 0.00 3.18
4484 5005 8.023128 CCCATATTAAGTGACTCAACAAAGTTG 58.977 37.037 3.58 3.58 0.00 3.16
4485 5006 7.942341 TCCCATATTAAGTGACTCAACAAAGTT 59.058 33.333 0.00 0.00 0.00 2.66
4486 5007 7.390718 GTCCCATATTAAGTGACTCAACAAAGT 59.609 37.037 0.00 0.00 0.00 2.66
4487 5008 7.413000 CGTCCCATATTAAGTGACTCAACAAAG 60.413 40.741 0.00 0.00 0.00 2.77
4488 5009 6.370442 CGTCCCATATTAAGTGACTCAACAAA 59.630 38.462 0.00 0.00 0.00 2.83
4489 5010 5.872617 CGTCCCATATTAAGTGACTCAACAA 59.127 40.000 0.00 0.00 0.00 2.83
4490 5011 5.416083 CGTCCCATATTAAGTGACTCAACA 58.584 41.667 0.00 0.00 0.00 3.33
4491 5012 4.809426 CCGTCCCATATTAAGTGACTCAAC 59.191 45.833 0.00 0.00 0.00 3.18
4492 5013 4.712829 TCCGTCCCATATTAAGTGACTCAA 59.287 41.667 0.00 0.00 0.00 3.02
4493 5014 4.283337 TCCGTCCCATATTAAGTGACTCA 58.717 43.478 0.00 0.00 0.00 3.41
4494 5015 4.262079 CCTCCGTCCCATATTAAGTGACTC 60.262 50.000 0.00 0.00 0.00 3.36
4495 5016 3.641906 CCTCCGTCCCATATTAAGTGACT 59.358 47.826 0.00 0.00 0.00 3.41
4496 5017 3.244112 CCCTCCGTCCCATATTAAGTGAC 60.244 52.174 0.00 0.00 0.00 3.67
4497 5018 2.969950 CCCTCCGTCCCATATTAAGTGA 59.030 50.000 0.00 0.00 0.00 3.41
4498 5019 2.969950 TCCCTCCGTCCCATATTAAGTG 59.030 50.000 0.00 0.00 0.00 3.16
4499 5020 3.240302 CTCCCTCCGTCCCATATTAAGT 58.760 50.000 0.00 0.00 0.00 2.24
4500 5021 3.240302 ACTCCCTCCGTCCCATATTAAG 58.760 50.000 0.00 0.00 0.00 1.85
4501 5022 3.339713 ACTCCCTCCGTCCCATATTAA 57.660 47.619 0.00 0.00 0.00 1.40
4502 5023 3.400322 AGTACTCCCTCCGTCCCATATTA 59.600 47.826 0.00 0.00 0.00 0.98
4503 5024 2.179424 AGTACTCCCTCCGTCCCATATT 59.821 50.000 0.00 0.00 0.00 1.28
4504 5025 1.787676 AGTACTCCCTCCGTCCCATAT 59.212 52.381 0.00 0.00 0.00 1.78
4505 5026 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4506 5027 1.145325 CTAGTACTCCCTCCGTCCCAT 59.855 57.143 0.00 0.00 0.00 4.00
4507 5028 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
4508 5029 0.550432 ACTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
4509 5030 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
4510 5031 5.359292 ACATAAAACTAGTACTCCCTCCGTC 59.641 44.000 0.00 0.00 0.00 4.79
4511 5032 5.267587 ACATAAAACTAGTACTCCCTCCGT 58.732 41.667 0.00 0.00 0.00 4.69
4512 5033 5.359009 TGACATAAAACTAGTACTCCCTCCG 59.641 44.000 0.00 0.00 0.00 4.63
4513 5034 6.786967 TGACATAAAACTAGTACTCCCTCC 57.213 41.667 0.00 0.00 0.00 4.30
4514 5035 6.702282 GCATGACATAAAACTAGTACTCCCTC 59.298 42.308 0.00 0.00 0.00 4.30
4515 5036 6.156256 TGCATGACATAAAACTAGTACTCCCT 59.844 38.462 0.00 0.00 0.00 4.20
4516 5037 6.346096 TGCATGACATAAAACTAGTACTCCC 58.654 40.000 0.00 0.00 0.00 4.30
4517 5038 8.438676 AATGCATGACATAAAACTAGTACTCC 57.561 34.615 0.00 0.00 38.34 3.85
4544 5065 9.691362 GCATGACATAAAACTCCTTTTCTAAAA 57.309 29.630 0.00 0.00 31.74 1.52
4545 5066 8.855110 TGCATGACATAAAACTCCTTTTCTAAA 58.145 29.630 0.00 0.00 31.74 1.85
4546 5067 8.402798 TGCATGACATAAAACTCCTTTTCTAA 57.597 30.769 0.00 0.00 31.74 2.10
4547 5068 7.994425 TGCATGACATAAAACTCCTTTTCTA 57.006 32.000 0.00 0.00 31.74 2.10
4548 5069 6.899393 TGCATGACATAAAACTCCTTTTCT 57.101 33.333 0.00 0.00 31.74 2.52
4549 5070 9.455847 GATATGCATGACATAAAACTCCTTTTC 57.544 33.333 10.16 1.46 44.36 2.29
4550 5071 9.193806 AGATATGCATGACATAAAACTCCTTTT 57.806 29.630 10.16 0.00 44.36 2.27
4551 5072 8.757982 AGATATGCATGACATAAAACTCCTTT 57.242 30.769 10.16 0.00 44.36 3.11
4552 5073 7.994911 TGAGATATGCATGACATAAAACTCCTT 59.005 33.333 10.16 7.17 44.36 3.36
4553 5074 7.512130 TGAGATATGCATGACATAAAACTCCT 58.488 34.615 10.16 11.92 44.36 3.69
4554 5075 7.734924 TGAGATATGCATGACATAAAACTCC 57.265 36.000 10.16 13.45 44.36 3.85
4751 5381 6.279513 AGGCTGAGATTAGCTGATGTATAC 57.720 41.667 0.00 0.00 43.22 1.47
4812 5442 1.867698 GCTAGATCCTGTTGCGCTCTC 60.868 57.143 9.73 0.00 0.00 3.20
4899 5529 3.130160 GGCTTCTCCTTGCAGCCG 61.130 66.667 0.00 0.00 43.73 5.52
4902 5532 2.044551 GGGGGCTTCTCCTTGCAG 60.045 66.667 0.00 0.00 34.39 4.41
5009 5641 4.899352 AGCTAACTGAGTCTTCAATGGT 57.101 40.909 0.00 0.00 31.69 3.55
5022 5654 5.563085 CGGGTATACTTGAGCTAGCTAACTG 60.563 48.000 19.38 8.46 0.00 3.16
5023 5655 4.519730 CGGGTATACTTGAGCTAGCTAACT 59.480 45.833 19.38 0.00 0.00 2.24
5024 5656 4.277921 ACGGGTATACTTGAGCTAGCTAAC 59.722 45.833 19.38 6.88 0.00 2.34
5070 5705 2.223735 GGAAGCACGGATCATAGAACGA 60.224 50.000 0.00 0.00 0.00 3.85
5264 5907 5.252547 TGCAATGCATGACTAACTAGGAAA 58.747 37.500 2.72 0.00 31.71 3.13
5265 5908 4.842574 TGCAATGCATGACTAACTAGGAA 58.157 39.130 2.72 0.00 31.71 3.36
5291 5935 6.591935 AGGTCTAGTCAGTGTCATTCAAAAA 58.408 36.000 0.00 0.00 0.00 1.94
5343 5987 4.082517 CGGCTCTGCTAGAATTGCTCTATA 60.083 45.833 0.00 0.00 36.02 1.31
5344 5988 3.305950 CGGCTCTGCTAGAATTGCTCTAT 60.306 47.826 0.00 0.00 36.02 1.98
5353 5997 1.414158 ATAAGGCGGCTCTGCTAGAA 58.586 50.000 13.70 0.00 34.52 2.10
5355 5999 1.506493 CAATAAGGCGGCTCTGCTAG 58.494 55.000 13.70 0.00 34.52 3.42
5385 6029 4.292186 AGTCCATATGCCGCTCATTATT 57.708 40.909 0.00 0.00 36.63 1.40
5393 6037 2.351738 GCCAAAATAGTCCATATGCCGC 60.352 50.000 0.00 0.00 0.00 6.53
5402 6046 4.775780 ACCCTTTTTAGGCCAAAATAGTCC 59.224 41.667 5.01 0.00 36.04 3.85
5428 6073 6.128227 CGAGGCCATATGACTAGAGTAAGTAC 60.128 46.154 5.01 0.00 0.00 2.73
5433 6078 4.286291 TCTCGAGGCCATATGACTAGAGTA 59.714 45.833 23.37 14.61 36.03 2.59
5439 6084 2.363680 CAACTCTCGAGGCCATATGACT 59.636 50.000 13.56 1.66 0.00 3.41
5456 6101 2.037641 GCTTCCTCCAAAAATGGCAACT 59.962 45.455 0.00 0.00 37.61 3.16
5457 6102 2.037641 AGCTTCCTCCAAAAATGGCAAC 59.962 45.455 0.00 0.00 0.00 4.17
5458 6103 2.299867 GAGCTTCCTCCAAAAATGGCAA 59.700 45.455 0.00 0.00 31.68 4.52
5459 6104 1.895131 GAGCTTCCTCCAAAAATGGCA 59.105 47.619 0.00 0.00 31.68 4.92
5460 6105 2.662006 GAGCTTCCTCCAAAAATGGC 57.338 50.000 0.00 0.00 31.68 4.40
5474 6140 4.532521 GTCTGGTGGGTATATATGGAGCTT 59.467 45.833 0.00 0.00 0.00 3.74
5475 6141 4.097418 GTCTGGTGGGTATATATGGAGCT 58.903 47.826 0.00 0.00 0.00 4.09
5484 6150 1.108776 GTGAGCGTCTGGTGGGTATA 58.891 55.000 0.00 0.00 0.00 1.47
5512 6181 2.306219 GGCTGGAAGGAAGGTAGACTTT 59.694 50.000 0.00 0.00 40.21 2.66
5585 6303 4.866508 AATTGGCATGCTTCCTGATATG 57.133 40.909 18.92 0.00 0.00 1.78
5586 6304 6.070995 CCATTAATTGGCATGCTTCCTGATAT 60.071 38.462 18.92 0.00 39.09 1.63
5587 6305 5.244402 CCATTAATTGGCATGCTTCCTGATA 59.756 40.000 18.92 0.00 39.09 2.15
5665 6383 4.444536 ACGGTCTTTTTATAGCCGCATAA 58.555 39.130 0.00 0.00 45.53 1.90
5666 6384 4.053295 GACGGTCTTTTTATAGCCGCATA 58.947 43.478 0.00 0.00 45.53 3.14
5667 6385 2.870411 GACGGTCTTTTTATAGCCGCAT 59.130 45.455 0.00 0.00 45.53 4.73
5717 6438 0.595095 GCAGCTGTGTTGGAAGGAAG 59.405 55.000 16.64 0.00 0.00 3.46
5718 6439 0.823356 GGCAGCTGTGTTGGAAGGAA 60.823 55.000 16.64 0.00 0.00 3.36
5719 6440 1.228245 GGCAGCTGTGTTGGAAGGA 60.228 57.895 16.64 0.00 0.00 3.36
5720 6441 2.270986 GGGCAGCTGTGTTGGAAGG 61.271 63.158 16.64 0.00 0.00 3.46
5798 7164 3.326297 ACTTCTCCCTGTCCTTCAAGAAG 59.674 47.826 8.06 8.06 41.02 2.85
5799 7165 3.071602 CACTTCTCCCTGTCCTTCAAGAA 59.928 47.826 0.00 0.00 0.00 2.52
5802 7168 1.699634 CCACTTCTCCCTGTCCTTCAA 59.300 52.381 0.00 0.00 0.00 2.69
5803 7169 1.132849 TCCACTTCTCCCTGTCCTTCA 60.133 52.381 0.00 0.00 0.00 3.02
5804 7170 1.552792 CTCCACTTCTCCCTGTCCTTC 59.447 57.143 0.00 0.00 0.00 3.46
5805 7171 1.650528 CTCCACTTCTCCCTGTCCTT 58.349 55.000 0.00 0.00 0.00 3.36
5806 7172 0.907230 GCTCCACTTCTCCCTGTCCT 60.907 60.000 0.00 0.00 0.00 3.85
5807 7173 1.194781 TGCTCCACTTCTCCCTGTCC 61.195 60.000 0.00 0.00 0.00 4.02
5808 7174 0.248843 CTGCTCCACTTCTCCCTGTC 59.751 60.000 0.00 0.00 0.00 3.51
5809 7175 1.197430 CCTGCTCCACTTCTCCCTGT 61.197 60.000 0.00 0.00 0.00 4.00
5810 7176 0.906756 TCCTGCTCCACTTCTCCCTG 60.907 60.000 0.00 0.00 0.00 4.45
5811 7177 0.617249 CTCCTGCTCCACTTCTCCCT 60.617 60.000 0.00 0.00 0.00 4.20
5813 7179 1.904032 CCTCCTGCTCCACTTCTCC 59.096 63.158 0.00 0.00 0.00 3.71
5815 7181 2.297129 GGCCTCCTGCTCCACTTCT 61.297 63.158 0.00 0.00 40.92 2.85
5825 7207 2.821366 GATGTGTGCGGCCTCCTG 60.821 66.667 0.00 0.00 0.00 3.86
5836 7218 1.326213 CCTCCTCCTCAGCGATGTGT 61.326 60.000 0.00 0.00 0.00 3.72
5861 7249 2.030274 TGCGCACGTCTAGCACATATAT 60.030 45.455 5.66 0.00 35.81 0.86
5885 7273 0.831288 CTCATCGAGGGCAGGATCCT 60.831 60.000 9.02 9.02 37.33 3.24
5949 7739 1.373497 CGCCTGCTCATACGGGATC 60.373 63.158 0.00 0.00 38.48 3.36
5950 7740 1.810606 CTCGCCTGCTCATACGGGAT 61.811 60.000 0.00 0.00 38.48 3.85
5951 7741 2.441348 TCGCCTGCTCATACGGGA 60.441 61.111 0.00 0.00 38.48 5.14
5952 7742 2.028190 CTCGCCTGCTCATACGGG 59.972 66.667 0.00 0.00 39.28 5.28
5953 7743 2.028190 CCTCGCCTGCTCATACGG 59.972 66.667 0.00 0.00 0.00 4.02
5954 7744 1.299468 GACCTCGCCTGCTCATACG 60.299 63.158 0.00 0.00 0.00 3.06
5955 7745 0.031449 GAGACCTCGCCTGCTCATAC 59.969 60.000 0.00 0.00 0.00 2.39
5956 7746 1.448119 CGAGACCTCGCCTGCTCATA 61.448 60.000 6.49 0.00 46.50 2.15
5957 7747 2.780094 CGAGACCTCGCCTGCTCAT 61.780 63.158 6.49 0.00 46.50 2.90
5958 7748 3.443925 CGAGACCTCGCCTGCTCA 61.444 66.667 6.49 0.00 46.50 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.