Multiple sequence alignment - TraesCS3A01G416100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G416100 chr3A 100.000 5455 0 0 1 5455 658900534 658905988 0.000000e+00 10074.0
1 TraesCS3A01G416100 chr3A 86.486 259 25 5 4591 4843 658983145 658983399 5.380000e-70 276.0
2 TraesCS3A01G416100 chr3A 93.333 165 11 0 5291 5455 658983757 658983921 1.520000e-60 244.0
3 TraesCS3A01G416100 chr3A 95.763 118 3 2 5261 5377 658905719 658905835 7.210000e-44 189.0
4 TraesCS3A01G416100 chr3A 95.763 118 3 2 5186 5302 658905794 658905910 7.210000e-44 189.0
5 TraesCS3A01G416100 chr3A 77.778 261 23 14 5216 5454 658983757 658984004 1.590000e-25 128.0
6 TraesCS3A01G416100 chr3B 91.599 2452 132 35 2178 4583 691747681 691750104 0.000000e+00 3319.0
7 TraesCS3A01G416100 chr3B 95.833 864 35 1 779 1642 691746517 691747379 0.000000e+00 1395.0
8 TraesCS3A01G416100 chr3B 87.451 765 60 21 3 748 691745770 691746517 0.000000e+00 848.0
9 TraesCS3A01G416100 chr3B 87.092 612 33 9 4589 5161 691750191 691750795 0.000000e+00 651.0
10 TraesCS3A01G416100 chr3B 91.916 334 22 5 1827 2157 691747365 691747696 3.850000e-126 462.0
11 TraesCS3A01G416100 chr3B 98.492 199 2 1 1639 1836 701414806 701414608 3.130000e-92 350.0
12 TraesCS3A01G416100 chr3B 98.454 194 2 1 1639 1832 738697721 738697529 1.880000e-89 340.0
13 TraesCS3A01G416100 chr3B 89.494 257 20 4 4590 4843 691922206 691922458 8.820000e-83 318.0
14 TraesCS3A01G416100 chr3B 95.513 156 7 0 5257 5412 691750849 691751004 3.260000e-62 250.0
15 TraesCS3A01G416100 chr3B 93.333 165 11 0 5291 5455 691922843 691923007 1.520000e-60 244.0
16 TraesCS3A01G416100 chr3B 81.699 306 32 18 5158 5454 691750825 691751115 3.290000e-57 233.0
17 TraesCS3A01G416100 chr3B 79.817 218 32 8 4296 4511 691775440 691775647 1.220000e-31 148.0
18 TraesCS3A01G416100 chr3B 77.395 261 24 14 5216 5454 691922843 691923090 7.420000e-24 122.0
19 TraesCS3A01G416100 chr3D 95.248 1452 58 8 2178 3622 524306673 524308120 0.000000e+00 2289.0
20 TraesCS3A01G416100 chr3D 92.675 1611 77 18 59 1643 524304786 524306381 0.000000e+00 2283.0
21 TraesCS3A01G416100 chr3D 89.468 978 74 11 3621 4583 524308154 524309117 0.000000e+00 1208.0
22 TraesCS3A01G416100 chr3D 85.520 587 37 20 4585 5128 524309201 524309782 2.200000e-158 569.0
23 TraesCS3A01G416100 chr3D 92.771 332 14 4 1827 2157 524306366 524306688 6.400000e-129 472.0
24 TraesCS3A01G416100 chr3D 86.038 265 21 7 4591 4843 524646412 524646672 2.500000e-68 270.0
25 TraesCS3A01G416100 chr3D 95.732 164 7 0 5292 5455 524309952 524310115 1.170000e-66 265.0
26 TraesCS3A01G416100 chr3D 100.000 35 0 0 5158 5192 524309854 524309888 1.270000e-06 65.8
27 TraesCS3A01G416100 chr2B 100.000 191 0 0 1643 1833 359864700 359864890 2.420000e-93 353.0
28 TraesCS3A01G416100 chrUn 99.474 190 1 0 1638 1827 71055829 71055640 4.040000e-91 346.0
29 TraesCS3A01G416100 chr7B 98.958 192 2 0 1644 1835 698903049 698903240 1.450000e-90 344.0
30 TraesCS3A01G416100 chr5A 98.964 193 1 1 1642 1834 464473682 464473873 1.450000e-90 344.0
31 TraesCS3A01G416100 chr4B 98.958 192 2 0 1643 1834 249050237 249050046 1.450000e-90 344.0
32 TraesCS3A01G416100 chr1A 97.512 201 4 1 1643 1842 534541848 534541648 5.230000e-90 342.0
33 TraesCS3A01G416100 chr4A 96.098 205 8 0 1625 1829 646314385 646314589 8.760000e-88 335.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G416100 chr3A 658900534 658905988 5454 False 3484.000000 10074 97.175333 1 5455 3 chr3A.!!$F1 5454
1 TraesCS3A01G416100 chr3A 658983145 658984004 859 False 216.000000 276 85.865667 4591 5455 3 chr3A.!!$F2 864
2 TraesCS3A01G416100 chr3B 691745770 691751115 5345 False 1022.571429 3319 90.157571 3 5454 7 chr3B.!!$F2 5451
3 TraesCS3A01G416100 chr3B 691922206 691923090 884 False 228.000000 318 86.740667 4590 5455 3 chr3B.!!$F3 865
4 TraesCS3A01G416100 chr3D 524304786 524310115 5329 False 1021.685714 2289 93.059143 59 5455 7 chr3D.!!$F2 5396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 423 0.529992 CGATTCGTAACTGCTCCCCC 60.530 60.0 0.00 0.00 0.00 5.40 F
1658 1694 0.553333 ATTAGAAGGGGAGCCTTGGC 59.447 55.0 2.97 2.97 0.00 4.52 F
1825 1861 0.105964 TGCACCAGGTTGCCCTTTTA 60.106 50.0 10.46 0.00 42.25 1.52 F
3036 3082 0.178964 TTTCCTTTGCTGTCCCCCTG 60.179 55.0 0.00 0.00 0.00 4.45 F
3746 3830 0.679640 TGCATAGGAAGTTTGGCGGG 60.680 55.0 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1710 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.0 0.0 44.78 4.85 R
3031 3077 0.326264 CTCAGAAGGAACACCAGGGG 59.674 60.0 0.0 0.0 0.00 4.79 R
3237 3283 0.910088 AGGAACTGGTCTAGGTGGGC 60.910 60.0 0.0 0.0 37.18 5.36 R
4157 4245 0.250234 CATTCTCCGACTTGCCCTGA 59.750 55.0 0.0 0.0 0.00 3.86 R
5262 5594 0.249911 ACGACTCTGCTTTCCACCAC 60.250 55.0 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.125350 CTTCGCTGCCACCTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
31 32 3.672295 CTTCGCTGCCACCTCCTCC 62.672 68.421 0.00 0.00 0.00 4.30
32 33 4.704103 TCGCTGCCACCTCCTCCT 62.704 66.667 0.00 0.00 0.00 3.69
33 34 4.154347 CGCTGCCACCTCCTCCTC 62.154 72.222 0.00 0.00 0.00 3.71
360 384 1.380380 GGTTTGGGGGATCTGGCTG 60.380 63.158 0.00 0.00 0.00 4.85
361 385 2.054453 GTTTGGGGGATCTGGCTGC 61.054 63.158 0.00 0.00 0.00 5.25
362 386 3.301222 TTTGGGGGATCTGGCTGCC 62.301 63.158 12.87 12.87 0.00 4.85
398 423 0.529992 CGATTCGTAACTGCTCCCCC 60.530 60.000 0.00 0.00 0.00 5.40
429 454 1.922135 TTTCCGCTGCGAATTCTGCC 61.922 55.000 25.45 4.84 0.00 4.85
519 551 2.159572 CCGGCCTAAGATTTCAACAACG 60.160 50.000 0.00 0.00 0.00 4.10
552 584 4.851179 GGGCCGGGCGGTTTAGAG 62.851 72.222 23.19 0.00 37.65 2.43
640 672 5.560724 AGTTTAGGAAGCAATGCTGACTTA 58.439 37.500 9.14 4.52 39.62 2.24
679 711 7.854557 TCGATGTACTACTAAGAAAGCTACA 57.145 36.000 0.00 0.00 0.00 2.74
680 712 7.692088 TCGATGTACTACTAAGAAAGCTACAC 58.308 38.462 0.00 0.00 0.00 2.90
681 713 6.911511 CGATGTACTACTAAGAAAGCTACACC 59.088 42.308 0.00 0.00 0.00 4.16
682 714 7.201714 CGATGTACTACTAAGAAAGCTACACCT 60.202 40.741 0.00 0.00 0.00 4.00
683 715 7.388460 TGTACTACTAAGAAAGCTACACCTC 57.612 40.000 0.00 0.00 0.00 3.85
684 716 7.173722 TGTACTACTAAGAAAGCTACACCTCT 58.826 38.462 0.00 0.00 0.00 3.69
685 717 8.324306 TGTACTACTAAGAAAGCTACACCTCTA 58.676 37.037 0.00 0.00 0.00 2.43
686 718 9.171877 GTACTACTAAGAAAGCTACACCTCTAA 57.828 37.037 0.00 0.00 0.00 2.10
687 719 8.647256 ACTACTAAGAAAGCTACACCTCTAAA 57.353 34.615 0.00 0.00 0.00 1.85
692 728 9.738832 CTAAGAAAGCTACACCTCTAAATCTAC 57.261 37.037 0.00 0.00 0.00 2.59
720 756 2.804527 GTCTTAGTTGGGGTGTTCGAAC 59.195 50.000 21.42 21.42 0.00 3.95
754 790 6.502652 TCATTCATTGCGAAACTTCTTCAAA 58.497 32.000 0.00 0.00 37.12 2.69
760 796 5.004922 TGCGAAACTTCTTCAAATTGGTT 57.995 34.783 0.00 0.00 0.00 3.67
777 813 1.947456 GGTTACGGGGATTCAGCATTC 59.053 52.381 0.00 0.00 0.00 2.67
825 861 4.528206 CCCCCTTTTGCTTCTCAGTTTATT 59.472 41.667 0.00 0.00 0.00 1.40
844 880 2.039405 ATCGGGGATTCAGGGGCT 60.039 61.111 0.00 0.00 0.00 5.19
866 902 6.925165 GGCTTTGTTTTCTCATTTCTGAATCA 59.075 34.615 0.00 0.00 0.00 2.57
983 1019 1.862602 AAGTTCCATCGCCGCCAAAC 61.863 55.000 0.00 0.00 0.00 2.93
1060 1096 2.171237 TGCATCTACTTCATGGACAGGG 59.829 50.000 0.00 0.00 0.00 4.45
1517 1553 6.147164 GCACTTTTTAAGGGATTTTGTTAGCC 59.853 38.462 0.00 0.00 32.08 3.93
1559 1595 5.970140 TTTGTTCAATGCAATCTGTGTTG 57.030 34.783 0.00 0.00 0.00 3.33
1636 1672 9.995003 TTAATTTTGGGTGATCATATTATTGGC 57.005 29.630 0.00 0.00 0.00 4.52
1637 1673 6.418057 TTTTGGGTGATCATATTATTGGCC 57.582 37.500 0.00 0.00 0.00 5.36
1638 1674 4.046286 TGGGTGATCATATTATTGGCCC 57.954 45.455 0.00 1.65 0.00 5.80
1639 1675 3.400662 TGGGTGATCATATTATTGGCCCA 59.599 43.478 10.12 10.12 40.88 5.36
1640 1676 4.045718 TGGGTGATCATATTATTGGCCCAT 59.954 41.667 10.12 0.00 38.57 4.00
1641 1677 5.025453 GGGTGATCATATTATTGGCCCATT 58.975 41.667 0.00 0.00 34.03 3.16
1642 1678 6.194235 GGGTGATCATATTATTGGCCCATTA 58.806 40.000 0.00 0.00 34.03 1.90
1643 1679 6.322201 GGGTGATCATATTATTGGCCCATTAG 59.678 42.308 0.00 0.00 34.03 1.73
1644 1680 7.118723 GGTGATCATATTATTGGCCCATTAGA 58.881 38.462 0.00 0.00 0.00 2.10
1645 1681 7.615365 GGTGATCATATTATTGGCCCATTAGAA 59.385 37.037 0.00 0.00 0.00 2.10
1646 1682 8.680903 GTGATCATATTATTGGCCCATTAGAAG 58.319 37.037 0.00 0.00 0.00 2.85
1647 1683 7.835682 TGATCATATTATTGGCCCATTAGAAGG 59.164 37.037 0.00 0.00 0.00 3.46
1656 1692 2.355010 CCATTAGAAGGGGAGCCTTG 57.645 55.000 0.00 0.00 0.00 3.61
1657 1693 1.133668 CCATTAGAAGGGGAGCCTTGG 60.134 57.143 0.00 0.00 0.00 3.61
1658 1694 0.553333 ATTAGAAGGGGAGCCTTGGC 59.447 55.000 2.97 2.97 0.00 4.52
1659 1695 1.910580 TTAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
1667 1703 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1668 1704 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1669 1705 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1670 1706 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1671 1707 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1672 1708 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1673 1709 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1678 1714 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1679 1715 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1680 1716 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1681 1717 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1682 1718 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1683 1719 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1684 1720 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1685 1721 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1686 1722 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1687 1723 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1688 1724 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1689 1725 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1690 1726 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1691 1727 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1692 1728 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1707 1743 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
1708 1744 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
1709 1745 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
1710 1746 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
1711 1747 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
1712 1748 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
1713 1749 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
1714 1750 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
1715 1751 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
1716 1752 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
1730 1766 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1731 1767 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1732 1768 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1733 1769 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1734 1770 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1735 1771 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1736 1772 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1737 1773 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1738 1774 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1739 1775 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1740 1776 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1741 1777 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1742 1778 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1743 1779 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1744 1780 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1745 1781 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1746 1782 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1747 1783 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1748 1784 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1749 1785 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1750 1786 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1751 1787 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1752 1788 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1753 1789 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1754 1790 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1755 1791 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1756 1792 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1757 1793 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1758 1794 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1759 1795 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1760 1796 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1761 1797 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1762 1798 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1763 1799 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1764 1800 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1765 1801 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1766 1802 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1767 1803 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1772 1808 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1773 1809 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1774 1810 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1775 1811 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1776 1812 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1777 1813 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1778 1814 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1779 1815 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1780 1816 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1781 1817 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1782 1818 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1783 1819 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1784 1820 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1785 1821 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1786 1822 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1787 1823 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1788 1824 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1789 1825 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1790 1826 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1791 1827 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1816 1852 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1817 1853 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1818 1854 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1819 1855 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
1820 1856 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1821 1857 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1822 1858 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
1823 1859 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
1824 1860 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
1825 1861 0.105964 TGCACCAGGTTGCCCTTTTA 60.106 50.000 10.46 0.00 42.25 1.52
1826 1862 1.266178 GCACCAGGTTGCCCTTTTAT 58.734 50.000 0.00 0.00 39.89 1.40
1827 1863 2.225142 TGCACCAGGTTGCCCTTTTATA 60.225 45.455 10.46 0.00 42.25 0.98
1828 1864 3.031013 GCACCAGGTTGCCCTTTTATAT 58.969 45.455 0.00 0.00 39.89 0.86
1829 1865 3.450817 GCACCAGGTTGCCCTTTTATATT 59.549 43.478 0.00 0.00 39.89 1.28
1939 1976 2.070783 TCTGCCCGTGTTAAAACGATC 58.929 47.619 19.78 10.60 46.49 3.69
1940 1977 2.073816 CTGCCCGTGTTAAAACGATCT 58.926 47.619 19.78 0.00 46.49 2.75
1950 1987 7.372396 CCGTGTTAAAACGATCTAATGCATTAC 59.628 37.037 19.78 5.36 46.49 1.89
1978 2015 8.082242 GCATTCTTTATGGAAGTGTGTAAGTTT 58.918 33.333 0.00 0.00 36.70 2.66
1979 2016 9.398170 CATTCTTTATGGAAGTGTGTAAGTTTG 57.602 33.333 0.00 0.00 36.70 2.93
1991 2028 9.783256 AAGTGTGTAAGTTTGTGACTAAATTTC 57.217 29.630 0.00 0.00 37.72 2.17
1992 2029 9.174166 AGTGTGTAAGTTTGTGACTAAATTTCT 57.826 29.630 0.00 0.00 37.72 2.52
2011 2048 6.715347 TTTCTGATCCTCGATTATCACTGA 57.285 37.500 5.89 1.88 0.00 3.41
2035 2072 7.502561 TGATATTTGATCGAAGTCCTCACTCTA 59.497 37.037 1.10 0.00 29.93 2.43
2044 2083 7.211573 TCGAAGTCCTCACTCTACTTAGATAG 58.788 42.308 0.00 0.00 33.72 2.08
2146 2185 4.469883 CCGCATAGATGGCTGCTT 57.530 55.556 0.00 0.00 36.23 3.91
2147 2186 2.242113 CCGCATAGATGGCTGCTTC 58.758 57.895 0.00 0.00 36.23 3.86
2148 2187 0.250209 CCGCATAGATGGCTGCTTCT 60.250 55.000 0.00 5.29 36.23 2.85
2149 2188 1.146637 CGCATAGATGGCTGCTTCTC 58.853 55.000 8.53 0.00 36.23 2.87
2150 2189 1.539712 CGCATAGATGGCTGCTTCTCA 60.540 52.381 8.53 0.00 36.23 3.27
2151 2190 2.780714 GCATAGATGGCTGCTTCTCAT 58.219 47.619 8.53 0.00 35.49 2.90
2152 2191 3.615834 CGCATAGATGGCTGCTTCTCATA 60.616 47.826 8.53 0.00 36.23 2.15
2153 2192 3.933955 GCATAGATGGCTGCTTCTCATAG 59.066 47.826 8.53 1.44 35.49 2.23
2154 2193 4.322574 GCATAGATGGCTGCTTCTCATAGA 60.323 45.833 8.53 0.00 35.49 1.98
2155 2194 5.627272 GCATAGATGGCTGCTTCTCATAGAT 60.627 44.000 8.53 0.00 35.49 1.98
2156 2195 6.406737 GCATAGATGGCTGCTTCTCATAGATA 60.407 42.308 8.53 0.00 35.49 1.98
2157 2196 7.687348 GCATAGATGGCTGCTTCTCATAGATAT 60.687 40.741 8.53 0.00 35.49 1.63
2158 2197 8.858094 CATAGATGGCTGCTTCTCATAGATATA 58.142 37.037 8.53 0.00 0.00 0.86
2159 2198 7.730672 AGATGGCTGCTTCTCATAGATATAA 57.269 36.000 0.00 0.00 0.00 0.98
2160 2199 7.555087 AGATGGCTGCTTCTCATAGATATAAC 58.445 38.462 0.00 0.00 0.00 1.89
2161 2200 6.670695 TGGCTGCTTCTCATAGATATAACA 57.329 37.500 0.00 0.00 0.00 2.41
2162 2201 7.066307 TGGCTGCTTCTCATAGATATAACAA 57.934 36.000 0.00 0.00 0.00 2.83
2163 2202 6.931281 TGGCTGCTTCTCATAGATATAACAAC 59.069 38.462 0.00 0.00 0.00 3.32
2164 2203 6.931281 GGCTGCTTCTCATAGATATAACAACA 59.069 38.462 0.00 0.00 0.00 3.33
2165 2204 7.442364 GGCTGCTTCTCATAGATATAACAACAA 59.558 37.037 0.00 0.00 0.00 2.83
2166 2205 8.279103 GCTGCTTCTCATAGATATAACAACAAC 58.721 37.037 0.00 0.00 0.00 3.32
2167 2206 9.317936 CTGCTTCTCATAGATATAACAACAACA 57.682 33.333 0.00 0.00 0.00 3.33
2168 2207 9.665719 TGCTTCTCATAGATATAACAACAACAA 57.334 29.630 0.00 0.00 0.00 2.83
2172 2211 9.109393 TCTCATAGATATAACAACAACAAAGCC 57.891 33.333 0.00 0.00 0.00 4.35
2173 2212 9.113838 CTCATAGATATAACAACAACAAAGCCT 57.886 33.333 0.00 0.00 0.00 4.58
2174 2213 9.461312 TCATAGATATAACAACAACAAAGCCTT 57.539 29.630 0.00 0.00 0.00 4.35
2178 2217 9.297037 AGATATAACAACAACAAAGCCTTTACT 57.703 29.630 0.00 0.00 0.00 2.24
2179 2218 9.341899 GATATAACAACAACAAAGCCTTTACTG 57.658 33.333 0.00 0.00 0.00 2.74
2180 2219 3.780902 ACAACAACAAAGCCTTTACTGC 58.219 40.909 0.00 0.00 0.00 4.40
2490 2529 8.245195 ACCTTGTTACATTTACAGTTGGAATT 57.755 30.769 0.00 0.00 0.00 2.17
2511 2550 2.992543 TGCGCAAAAGGCAAATATTGAC 59.007 40.909 8.16 0.00 45.17 3.18
2558 2601 7.864108 ATTAGACATGTAGCATGCTTAAACA 57.136 32.000 28.02 23.88 0.00 2.83
2559 2602 5.808042 AGACATGTAGCATGCTTAAACAG 57.192 39.130 28.02 18.11 0.00 3.16
2560 2603 5.491070 AGACATGTAGCATGCTTAAACAGA 58.509 37.500 28.02 6.06 0.00 3.41
2639 2682 5.867716 GCAGTGAATTGCTCAATTTCTTCAT 59.132 36.000 8.98 0.00 40.77 2.57
2715 2758 4.870426 TCTCGGAGAACTTCACAATTATGC 59.130 41.667 4.96 0.00 34.09 3.14
2814 2857 5.359860 AGCAAGCAAACTAAGTGGTAAGTTT 59.640 36.000 0.00 0.00 44.62 2.66
2835 2879 9.463443 AAGTTTGTGCTATTGTTTATCAAGTTC 57.537 29.630 0.00 0.00 39.55 3.01
2843 2887 8.427774 GCTATTGTTTATCAAGTTCTTTTGCAC 58.572 33.333 0.00 0.00 39.55 4.57
2924 2969 5.859205 ATGCCAAGAGATTTTTACATCCC 57.141 39.130 0.00 0.00 0.00 3.85
3008 3053 2.676839 CAATGCAGAGGAGTAAGCACTG 59.323 50.000 0.00 0.00 40.14 3.66
3025 3071 1.756538 ACTGCACCCTTGTTTCCTTTG 59.243 47.619 0.00 0.00 0.00 2.77
3026 3072 0.463620 TGCACCCTTGTTTCCTTTGC 59.536 50.000 0.00 0.00 0.00 3.68
3031 3077 1.341209 CCCTTGTTTCCTTTGCTGTCC 59.659 52.381 0.00 0.00 0.00 4.02
3036 3082 0.178964 TTTCCTTTGCTGTCCCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
3237 3283 4.944962 TCTTGTTGATGCTTAACCATCG 57.055 40.909 6.33 0.00 43.52 3.84
3246 3292 1.810412 GCTTAACCATCGCCCACCTAG 60.810 57.143 0.00 0.00 0.00 3.02
3266 3312 5.129485 CCTAGACCAGTTCCTTATGTGACAT 59.871 44.000 2.65 2.65 0.00 3.06
3311 3357 4.335647 AGGCCAGGCTGGTGTTCG 62.336 66.667 32.80 8.60 40.46 3.95
3314 3360 2.671070 CCAGGCTGGTGTTCGGAT 59.329 61.111 25.74 0.00 31.35 4.18
3365 3411 6.883756 AGGGGCCAAATTGTTTATTGTTAATG 59.116 34.615 4.39 0.00 0.00 1.90
3484 3530 4.350520 TGTATGGCATATGATTCAGGTGGA 59.649 41.667 10.92 0.00 0.00 4.02
3494 3540 4.326826 TGATTCAGGTGGAGTGTCATTTC 58.673 43.478 0.00 0.00 0.00 2.17
3521 3571 4.579869 TCTTAGTCATCTTGTTTGGAGCC 58.420 43.478 0.00 0.00 0.00 4.70
3522 3572 1.813513 AGTCATCTTGTTTGGAGCCG 58.186 50.000 0.00 0.00 0.00 5.52
3538 3588 2.608090 GAGCCGGTATGCTTACACTTTC 59.392 50.000 1.90 1.31 42.95 2.62
3540 3590 2.095372 GCCGGTATGCTTACACTTTCAC 59.905 50.000 1.90 0.00 0.00 3.18
3541 3591 3.331150 CCGGTATGCTTACACTTTCACA 58.669 45.455 11.47 0.00 0.00 3.58
3547 3597 5.924475 ATGCTTACACTTTCACACACTAC 57.076 39.130 0.00 0.00 0.00 2.73
3550 3600 5.522460 TGCTTACACTTTCACACACTACTTC 59.478 40.000 0.00 0.00 0.00 3.01
3618 3668 7.610305 TCTTAGGAAATGTGTGGAGGTATTTTC 59.390 37.037 0.00 0.00 0.00 2.29
3622 3672 6.868339 GGAAATGTGTGGAGGTATTTTCTTTG 59.132 38.462 0.00 0.00 0.00 2.77
3623 3673 4.846779 TGTGTGGAGGTATTTTCTTTGC 57.153 40.909 0.00 0.00 0.00 3.68
3638 3722 5.741388 TTCTTTGCTCTCTTGAAAGTGAC 57.259 39.130 0.00 0.00 0.00 3.67
3649 3733 5.680619 TCTTGAAAGTGACCACTGTACATT 58.319 37.500 3.13 0.00 41.58 2.71
3662 3746 6.938596 ACCACTGTACATTTAAGTTAACCTCC 59.061 38.462 0.88 0.00 0.00 4.30
3691 3775 9.566432 AAGGTCTAGGATAGCTTAAATTGATTG 57.434 33.333 0.00 0.00 38.99 2.67
3705 3789 2.561209 TGATTGCTAGGGACCCTGTA 57.439 50.000 24.42 9.81 34.61 2.74
3721 3805 2.368875 CCTGTAGAATTGGGGCGTAGAT 59.631 50.000 0.00 0.00 0.00 1.98
3743 3827 2.167075 AGCAATGCATAGGAAGTTTGGC 59.833 45.455 8.35 0.00 0.00 4.52
3746 3830 0.679640 TGCATAGGAAGTTTGGCGGG 60.680 55.000 0.00 0.00 0.00 6.13
3816 3900 6.821665 TGCTATGGACTGTAATCCTACAAAAC 59.178 38.462 0.00 0.00 37.58 2.43
3851 3935 6.769822 CCAAAGGAGTAGTCTGCATGATTAAT 59.230 38.462 0.00 0.00 34.40 1.40
3882 3966 5.744171 TGACATTTTCATAGAAGGCTAGCA 58.256 37.500 18.24 0.00 0.00 3.49
3890 3974 1.289160 AGAAGGCTAGCACCATCCAA 58.711 50.000 18.24 0.00 0.00 3.53
3923 4007 3.967987 ACAATAACTCTAGGGGGCTGTAG 59.032 47.826 0.00 0.00 0.00 2.74
3931 4015 2.263895 AGGGGGCTGTAGTTATGTGA 57.736 50.000 0.00 0.00 0.00 3.58
3957 4042 4.219115 TCACTTTACATGCTTTCCCCAAA 58.781 39.130 0.00 0.00 0.00 3.28
3959 4044 3.964031 ACTTTACATGCTTTCCCCAAACA 59.036 39.130 0.00 0.00 0.00 2.83
3961 4046 4.799564 TTACATGCTTTCCCCAAACATC 57.200 40.909 0.00 0.00 0.00 3.06
3983 4069 6.573664 TCCATGTTTTACTGATTGGAACTG 57.426 37.500 0.00 0.00 30.62 3.16
3986 4072 6.863126 CCATGTTTTACTGATTGGAACTGTTC 59.137 38.462 12.05 12.05 0.00 3.18
3992 4078 4.810790 ACTGATTGGAACTGTTCTACTCG 58.189 43.478 19.05 14.29 0.00 4.18
3993 4079 4.523173 ACTGATTGGAACTGTTCTACTCGA 59.477 41.667 19.05 4.04 0.00 4.04
3995 4081 5.651530 TGATTGGAACTGTTCTACTCGATC 58.348 41.667 19.05 15.74 0.00 3.69
3998 4084 6.829229 TTGGAACTGTTCTACTCGATCTTA 57.171 37.500 19.05 0.00 0.00 2.10
4011 4098 8.255206 TCTACTCGATCTTAAATTAAACAGCCA 58.745 33.333 0.00 0.00 0.00 4.75
4038 4125 6.738114 TCATGAGAAAATTGGAGTTGTTGAC 58.262 36.000 0.00 0.00 0.00 3.18
4077 4164 1.149101 AGGGTGTTCCATCACTTGGT 58.851 50.000 0.00 0.00 46.52 3.67
4153 4241 7.514721 TGTTTCCTGACCTGTAGTATTCTTTT 58.485 34.615 0.00 0.00 0.00 2.27
4157 4245 6.497259 TCCTGACCTGTAGTATTCTTTTCTGT 59.503 38.462 0.00 0.00 0.00 3.41
4265 4365 5.654603 TGTACACGAATTCTGTACTCCAT 57.345 39.130 28.56 7.74 43.02 3.41
4268 4368 3.055819 ACACGAATTCTGTACTCCATGCT 60.056 43.478 3.52 0.00 0.00 3.79
4269 4369 3.308053 CACGAATTCTGTACTCCATGCTG 59.692 47.826 3.52 0.00 0.00 4.41
4270 4370 3.055819 ACGAATTCTGTACTCCATGCTGT 60.056 43.478 3.52 0.00 0.00 4.40
4285 4385 4.624024 CCATGCTGTGACACAAATCAATTC 59.376 41.667 10.02 0.00 0.00 2.17
4290 4390 4.558178 TGTGACACAAATCAATTCATGCC 58.442 39.130 5.62 0.00 0.00 4.40
4349 4452 2.125106 GCGCCACAGGTAAGAGGG 60.125 66.667 0.00 0.00 0.00 4.30
4516 4619 0.034380 GAGGAAACCTGGCCCTTACC 60.034 60.000 0.00 0.00 31.76 2.85
4536 4639 3.386078 ACCTGCTCAGTATCGTTCATGAT 59.614 43.478 0.00 0.00 0.00 2.45
4537 4640 3.739810 CCTGCTCAGTATCGTTCATGATG 59.260 47.826 0.00 0.00 0.00 3.07
4538 4641 4.500375 CCTGCTCAGTATCGTTCATGATGA 60.500 45.833 0.00 0.00 0.00 2.92
4583 4686 4.475135 GAAGCTCCCGGGCCAGAC 62.475 72.222 18.49 5.58 0.00 3.51
4593 4777 1.389609 CGGGCCAGACCACGTAGTAT 61.390 60.000 4.39 0.00 41.61 2.12
4616 4800 7.900782 ATATTATTGTACCGATGCCACTTAC 57.099 36.000 0.00 0.00 0.00 2.34
4754 4943 2.755650 CAGGTAGGATTGTATCACGCC 58.244 52.381 0.00 0.00 0.00 5.68
4768 4957 4.471726 CGCCGGTAGTCGTCGCTT 62.472 66.667 1.90 0.00 32.45 4.68
4807 5001 2.094494 GCTCAGTAGTAGCTGTGCTTCA 60.094 50.000 11.36 0.00 46.38 3.02
4868 5068 2.667418 CTGGGTGGTGGAGCTCTG 59.333 66.667 14.64 0.00 0.00 3.35
4875 5075 2.184579 GTGGAGCTCTGGTACGCC 59.815 66.667 14.64 0.00 0.00 5.68
4876 5076 3.449227 TGGAGCTCTGGTACGCCG 61.449 66.667 14.64 0.00 37.67 6.46
4877 5077 4.874977 GGAGCTCTGGTACGCCGC 62.875 72.222 14.64 0.00 37.67 6.53
4884 5084 3.465296 CTGGTACGCCGCCTCGTAG 62.465 68.421 5.50 0.00 44.35 3.51
4935 5135 1.002366 CGTACGCGGAGTAGTACTGT 58.998 55.000 12.47 1.84 39.91 3.55
4939 5139 0.179171 CGCGGAGTAGTACTGTGTGG 60.179 60.000 7.76 0.00 0.00 4.17
5013 5246 1.063488 GCTCTCTTCGTCGCTCTCC 59.937 63.158 0.00 0.00 0.00 3.71
5021 5254 3.379445 GTCGCTCTCCCACCCGAA 61.379 66.667 0.00 0.00 0.00 4.30
5031 5264 0.326927 CCCACCCGAACTGGTTGTAT 59.673 55.000 0.00 0.00 36.12 2.29
5035 5268 1.202830 ACCCGAACTGGTTGTATTGCA 60.203 47.619 0.00 0.00 33.91 4.08
5070 5303 3.777925 CGGCGTTGGACAAGAGCG 61.778 66.667 0.00 0.00 0.00 5.03
5128 5364 1.582610 CTGGTACGCATTTTGCCCGT 61.583 55.000 0.00 0.00 41.12 5.28
5129 5365 0.321387 TGGTACGCATTTTGCCCGTA 60.321 50.000 0.00 0.00 41.12 4.02
5146 5391 0.391263 GTACCCGTGCTTCTTCTGGG 60.391 60.000 0.00 0.00 45.70 4.45
5247 5579 2.879462 CCGTAGCCGTGCTTCGTC 60.879 66.667 18.17 3.58 45.34 4.20
5248 5580 2.178521 CGTAGCCGTGCTTCGTCT 59.821 61.111 13.80 0.00 42.71 4.18
5249 5581 2.152699 CGTAGCCGTGCTTCGTCTG 61.153 63.158 13.80 0.00 42.71 3.51
5250 5582 2.126071 TAGCCGTGCTTCGTCTGC 60.126 61.111 3.71 0.00 40.44 4.26
5251 5583 2.636412 TAGCCGTGCTTCGTCTGCT 61.636 57.895 3.71 0.00 40.44 4.24
5252 5584 2.154798 TAGCCGTGCTTCGTCTGCTT 62.155 55.000 3.71 0.00 40.44 3.91
5253 5585 3.016474 GCCGTGCTTCGTCTGCTTC 62.016 63.158 1.89 0.00 37.94 3.86
5254 5586 2.720758 CCGTGCTTCGTCTGCTTCG 61.721 63.158 1.89 0.00 37.94 3.79
5255 5587 2.472049 GTGCTTCGTCTGCTTCGC 59.528 61.111 0.00 0.00 0.00 4.70
5256 5588 3.105782 TGCTTCGTCTGCTTCGCG 61.106 61.111 0.00 0.00 0.00 5.87
5257 5589 4.491328 GCTTCGTCTGCTTCGCGC 62.491 66.667 0.00 0.00 39.77 6.86
5258 5590 3.843240 CTTCGTCTGCTTCGCGCC 61.843 66.667 0.00 0.00 38.05 6.53
5259 5591 4.656117 TTCGTCTGCTTCGCGCCA 62.656 61.111 0.00 0.00 38.05 5.69
5275 5607 3.343972 CACCGTGGTGGAAAGCAG 58.656 61.111 11.29 0.00 42.00 4.24
5276 5608 1.227823 CACCGTGGTGGAAAGCAGA 60.228 57.895 11.29 0.00 42.00 4.26
5277 5609 1.071471 ACCGTGGTGGAAAGCAGAG 59.929 57.895 0.00 0.00 42.00 3.35
5278 5610 1.071471 CCGTGGTGGAAAGCAGAGT 59.929 57.895 0.00 0.00 42.00 3.24
5279 5611 0.951040 CCGTGGTGGAAAGCAGAGTC 60.951 60.000 0.00 0.00 42.00 3.36
5280 5612 1.284982 CGTGGTGGAAAGCAGAGTCG 61.285 60.000 0.00 0.00 0.00 4.18
5281 5613 0.249911 GTGGTGGAAAGCAGAGTCGT 60.250 55.000 0.00 0.00 0.00 4.34
5282 5614 1.000506 GTGGTGGAAAGCAGAGTCGTA 59.999 52.381 0.00 0.00 0.00 3.43
5283 5615 1.000506 TGGTGGAAAGCAGAGTCGTAC 59.999 52.381 0.00 0.00 0.00 3.67
5284 5616 1.672145 GGTGGAAAGCAGAGTCGTACC 60.672 57.143 0.00 0.00 0.00 3.34
5285 5617 0.606604 TGGAAAGCAGAGTCGTACCC 59.393 55.000 0.00 0.00 0.00 3.69
5286 5618 0.896226 GGAAAGCAGAGTCGTACCCT 59.104 55.000 0.00 0.00 0.00 4.34
5287 5619 1.135053 GGAAAGCAGAGTCGTACCCTC 60.135 57.143 0.01 0.01 0.00 4.30
5288 5620 0.896226 AAAGCAGAGTCGTACCCTCC 59.104 55.000 4.09 0.00 0.00 4.30
5289 5621 1.313812 AAGCAGAGTCGTACCCTCCG 61.314 60.000 4.09 0.00 0.00 4.63
5290 5622 2.772691 GCAGAGTCGTACCCTCCGG 61.773 68.421 0.00 0.00 0.00 5.14
5291 5623 2.439883 AGAGTCGTACCCTCCGGC 60.440 66.667 0.00 0.00 0.00 6.13
5292 5624 3.525545 GAGTCGTACCCTCCGGCC 61.526 72.222 0.00 0.00 0.00 6.13
5293 5625 4.371417 AGTCGTACCCTCCGGCCA 62.371 66.667 2.24 0.00 0.00 5.36
5294 5626 3.152400 GTCGTACCCTCCGGCCAT 61.152 66.667 2.24 0.00 0.00 4.40
5295 5627 2.836360 TCGTACCCTCCGGCCATC 60.836 66.667 2.24 0.00 0.00 3.51
5296 5628 2.838225 CGTACCCTCCGGCCATCT 60.838 66.667 2.24 0.00 0.00 2.90
5297 5629 2.822399 GTACCCTCCGGCCATCTG 59.178 66.667 2.24 0.00 0.00 2.90
5298 5630 3.161450 TACCCTCCGGCCATCTGC 61.161 66.667 2.24 0.00 40.16 4.26
5334 5666 4.656117 TTCGTCTGCTTCGCGCCA 62.656 61.111 0.00 0.00 38.05 5.69
5422 5754 2.636412 TAGCCGTGCTTCTGCGTCT 61.636 57.895 3.71 0.00 43.34 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.124351 TGAAGTCGGCGCGGTAGG 62.124 66.667 15.06 0.00 0.00 3.18
61 62 2.879462 GTGAAGTCGGCGCGGTAG 60.879 66.667 15.06 0.00 0.00 3.18
62 63 4.764336 CGTGAAGTCGGCGCGGTA 62.764 66.667 15.06 0.00 35.77 4.02
398 423 1.532868 CAGCGGAAACTGAAGGAACTG 59.467 52.381 0.00 0.00 40.86 3.16
447 472 2.967076 ACGCAACACAGGTCGCTG 60.967 61.111 0.00 0.00 0.00 5.18
519 551 3.518068 CCCGAATTTCAGGCGGCC 61.518 66.667 12.11 12.11 43.52 6.13
552 584 2.096218 CACGCAAGCACCTAGAAGAAAC 60.096 50.000 0.00 0.00 45.62 2.78
640 672 3.926616 ACATCGAAAAATCACGACTCCT 58.073 40.909 0.00 0.00 41.17 3.69
653 685 8.733458 TGTAGCTTTCTTAGTAGTACATCGAAA 58.267 33.333 2.52 6.85 0.00 3.46
656 688 6.911511 GGTGTAGCTTTCTTAGTAGTACATCG 59.088 42.308 2.52 0.00 0.00 3.84
679 711 7.784470 AAGACAGACTTGTAGATTTAGAGGT 57.216 36.000 0.00 0.00 37.76 3.85
680 712 8.962679 ACTAAGACAGACTTGTAGATTTAGAGG 58.037 37.037 0.00 0.00 37.76 3.69
683 715 9.360093 CCAACTAAGACAGACTTGTAGATTTAG 57.640 37.037 0.00 0.00 37.76 1.85
684 716 8.311836 CCCAACTAAGACAGACTTGTAGATTTA 58.688 37.037 0.00 0.00 37.76 1.40
685 717 7.162082 CCCAACTAAGACAGACTTGTAGATTT 58.838 38.462 0.00 0.00 37.76 2.17
686 718 6.295916 CCCCAACTAAGACAGACTTGTAGATT 60.296 42.308 0.00 0.00 37.76 2.40
687 719 5.187967 CCCCAACTAAGACAGACTTGTAGAT 59.812 44.000 0.00 0.00 37.76 1.98
692 728 3.181454 ACACCCCAACTAAGACAGACTTG 60.181 47.826 0.00 0.00 39.38 3.16
720 756 4.105486 TCGCAATGAATGAACGAGACTAG 58.895 43.478 0.00 0.00 0.00 2.57
754 790 1.283613 TGCTGAATCCCCGTAACCAAT 59.716 47.619 0.00 0.00 0.00 3.16
760 796 3.572642 TCTAGAATGCTGAATCCCCGTA 58.427 45.455 0.00 0.00 0.00 4.02
777 813 5.221521 TGCTGATTAGGCTGGTTACATCTAG 60.222 44.000 0.00 0.00 0.00 2.43
825 861 2.452064 GCCCCTGAATCCCCGATGA 61.452 63.158 0.00 0.00 0.00 2.92
866 902 7.833786 TCAGAGCAGCTTTTAAATCATCAAAT 58.166 30.769 0.00 0.00 0.00 2.32
875 911 9.793252 GAATGATAAATCAGAGCAGCTTTTAAA 57.207 29.630 0.00 0.00 40.64 1.52
879 915 7.642082 AAGAATGATAAATCAGAGCAGCTTT 57.358 32.000 0.00 0.00 40.64 3.51
884 920 6.481313 CGAGGAAAGAATGATAAATCAGAGCA 59.519 38.462 0.00 0.00 40.64 4.26
917 953 4.319118 GCTGAAGAACTTGTAGCTGTGAAC 60.319 45.833 0.00 0.00 0.00 3.18
983 1019 0.250038 CATGGGGGCTGTCAGTATCG 60.250 60.000 0.93 0.00 0.00 2.92
1035 1071 5.221601 CCTGTCCATGAAGTAGATGCACTAT 60.222 44.000 0.00 0.00 33.39 2.12
1036 1072 4.100035 CCTGTCCATGAAGTAGATGCACTA 59.900 45.833 0.00 0.00 0.00 2.74
1060 1096 2.977772 AGAAGTCACTAGGCATGAGC 57.022 50.000 0.00 0.00 41.10 4.26
1234 1270 9.787532 CAATTTACCTTGGTTATATTGACTGTG 57.212 33.333 0.00 0.00 0.00 3.66
1324 1360 1.457346 AGGGAAATGAAGCTGCGAAG 58.543 50.000 0.00 0.00 0.00 3.79
1487 1523 6.267699 ACAAAATCCCTTAAAAAGTGCTAGCT 59.732 34.615 17.23 0.00 0.00 3.32
1517 1553 6.795399 ACAAATACAGGACACAAGTCAAAAG 58.205 36.000 0.00 0.00 46.80 2.27
1559 1595 8.966069 AACAGGATATAAGTAAGAAGAAAGCC 57.034 34.615 0.00 0.00 0.00 4.35
1626 1662 5.559545 TCCCCTTCTAATGGGCCAATAATAT 59.440 40.000 11.89 0.00 43.26 1.28
1631 1667 1.500736 CTCCCCTTCTAATGGGCCAAT 59.499 52.381 11.89 4.19 43.26 3.16
1632 1668 0.926293 CTCCCCTTCTAATGGGCCAA 59.074 55.000 11.89 0.00 43.26 4.52
1633 1669 1.645402 GCTCCCCTTCTAATGGGCCA 61.645 60.000 9.61 9.61 43.26 5.36
1634 1670 1.151679 GCTCCCCTTCTAATGGGCC 59.848 63.158 0.00 0.00 43.26 5.80
1635 1671 1.151679 GGCTCCCCTTCTAATGGGC 59.848 63.158 0.00 0.00 43.26 5.36
1636 1672 2.951690 AGGCTCCCCTTCTAATGGG 58.048 57.895 0.00 0.00 38.74 4.00
1649 1685 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1650 1686 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1651 1687 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1652 1688 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1653 1689 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1654 1690 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1655 1691 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1656 1692 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1660 1696 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1661 1697 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1662 1698 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1663 1699 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1664 1700 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1665 1701 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1666 1702 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1667 1703 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1668 1704 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1669 1705 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1670 1706 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1671 1707 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1672 1708 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1673 1709 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1674 1710 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1675 1711 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1687 1723 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
1688 1724 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
1689 1725 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
1690 1726 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
1691 1727 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
1692 1728 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
1693 1729 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
1694 1730 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
1695 1731 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
1696 1732 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
1697 1733 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1698 1734 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1699 1735 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1700 1736 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1701 1737 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1702 1738 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1703 1739 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1704 1740 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1705 1741 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1706 1742 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1707 1743 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1708 1744 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1720 1756 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1721 1757 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1722 1758 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1723 1759 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1724 1760 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1725 1761 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1726 1762 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1727 1763 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1728 1764 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1729 1765 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1730 1766 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1731 1767 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1732 1768 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1733 1769 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1734 1770 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1735 1771 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1736 1772 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1737 1773 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1738 1774 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1739 1775 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1740 1776 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1741 1777 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1742 1778 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1743 1779 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1744 1780 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1745 1781 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1746 1782 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1756 1792 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1757 1793 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1758 1794 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1759 1795 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1760 1796 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1761 1797 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1762 1798 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1763 1799 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1764 1800 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1765 1801 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1766 1802 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1767 1803 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1768 1804 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1769 1805 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1770 1806 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1771 1807 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1772 1808 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1773 1809 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1774 1810 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1786 1822 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1789 1825 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1790 1826 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1791 1827 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1792 1828 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1798 1834 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1799 1835 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1800 1836 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1801 1837 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1802 1838 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1814 1850 5.071115 TGGGCCAATAATATAAAAGGGCAAC 59.929 40.000 2.13 0.00 42.81 4.17
1815 1851 5.219739 TGGGCCAATAATATAAAAGGGCAA 58.780 37.500 2.13 0.00 42.81 4.52
1816 1852 4.820775 TGGGCCAATAATATAAAAGGGCA 58.179 39.130 2.13 0.00 42.81 5.36
1817 1853 6.373005 AATGGGCCAATAATATAAAAGGGC 57.627 37.500 11.89 0.00 40.58 5.19
1818 1854 8.664669 AGTAATGGGCCAATAATATAAAAGGG 57.335 34.615 11.89 0.00 0.00 3.95
1819 1855 9.927668 CAAGTAATGGGCCAATAATATAAAAGG 57.072 33.333 11.89 0.00 0.00 3.11
1825 1861 8.096414 GCAATTCAAGTAATGGGCCAATAATAT 58.904 33.333 11.89 0.00 0.00 1.28
1826 1862 7.289782 AGCAATTCAAGTAATGGGCCAATAATA 59.710 33.333 11.89 0.00 32.01 0.98
1827 1863 6.100134 AGCAATTCAAGTAATGGGCCAATAAT 59.900 34.615 11.89 1.95 32.01 1.28
1828 1864 5.424895 AGCAATTCAAGTAATGGGCCAATAA 59.575 36.000 11.89 0.00 32.01 1.40
1829 1865 4.961730 AGCAATTCAAGTAATGGGCCAATA 59.038 37.500 11.89 2.80 32.01 1.90
1950 1987 5.633830 ACACACTTCCATAAAGAATGCAG 57.366 39.130 0.00 0.00 38.44 4.41
1978 2015 6.280855 TCGAGGATCAGAAATTTAGTCACA 57.719 37.500 0.00 0.00 33.17 3.58
1979 2016 7.778470 AATCGAGGATCAGAAATTTAGTCAC 57.222 36.000 0.00 0.00 33.17 3.67
1991 2028 9.085250 CAAATATCAGTGATAATCGAGGATCAG 57.915 37.037 16.61 3.24 32.81 2.90
1992 2029 8.806146 TCAAATATCAGTGATAATCGAGGATCA 58.194 33.333 16.61 7.72 33.17 2.92
2011 2048 6.723298 AGAGTGAGGACTTCGATCAAATAT 57.277 37.500 0.00 0.00 30.16 1.28
2044 2083 7.339482 AGTTAGGAGGAACCACATATCTTTTC 58.661 38.462 0.00 0.00 42.04 2.29
2146 2185 9.109393 GGCTTTGTTGTTGTTATATCTATGAGA 57.891 33.333 0.00 0.00 0.00 3.27
2147 2186 9.113838 AGGCTTTGTTGTTGTTATATCTATGAG 57.886 33.333 0.00 0.00 0.00 2.90
2148 2187 9.461312 AAGGCTTTGTTGTTGTTATATCTATGA 57.539 29.630 0.00 0.00 0.00 2.15
2152 2191 9.297037 AGTAAAGGCTTTGTTGTTGTTATATCT 57.703 29.630 22.32 0.00 0.00 1.98
2153 2192 9.341899 CAGTAAAGGCTTTGTTGTTGTTATATC 57.658 33.333 22.32 0.00 0.00 1.63
2154 2193 7.812669 GCAGTAAAGGCTTTGTTGTTGTTATAT 59.187 33.333 22.32 0.00 0.00 0.86
2155 2194 7.013846 AGCAGTAAAGGCTTTGTTGTTGTTATA 59.986 33.333 22.32 0.00 38.81 0.98
2156 2195 5.983118 GCAGTAAAGGCTTTGTTGTTGTTAT 59.017 36.000 22.32 0.00 0.00 1.89
2157 2196 5.126384 AGCAGTAAAGGCTTTGTTGTTGTTA 59.874 36.000 22.32 0.00 38.81 2.41
2158 2197 4.081697 AGCAGTAAAGGCTTTGTTGTTGTT 60.082 37.500 22.32 8.25 38.81 2.83
2159 2198 3.447229 AGCAGTAAAGGCTTTGTTGTTGT 59.553 39.130 22.32 6.96 38.81 3.32
2160 2199 4.045636 AGCAGTAAAGGCTTTGTTGTTG 57.954 40.909 22.32 12.96 38.81 3.33
2169 2208 5.885449 ATCTATGAGAAGCAGTAAAGGCT 57.115 39.130 0.00 0.00 45.15 4.58
2170 2209 7.307692 GCTTTATCTATGAGAAGCAGTAAAGGC 60.308 40.741 11.14 0.00 42.94 4.35
2171 2210 7.930865 AGCTTTATCTATGAGAAGCAGTAAAGG 59.069 37.037 15.60 0.00 45.17 3.11
2172 2211 8.763356 CAGCTTTATCTATGAGAAGCAGTAAAG 58.237 37.037 15.60 8.38 45.17 1.85
2173 2212 7.712639 CCAGCTTTATCTATGAGAAGCAGTAAA 59.287 37.037 15.60 0.57 45.17 2.01
2174 2213 7.147655 ACCAGCTTTATCTATGAGAAGCAGTAA 60.148 37.037 15.60 0.00 45.17 2.24
2175 2214 6.325028 ACCAGCTTTATCTATGAGAAGCAGTA 59.675 38.462 15.60 0.00 45.17 2.74
2176 2215 5.130145 ACCAGCTTTATCTATGAGAAGCAGT 59.870 40.000 15.60 11.41 45.17 4.40
2177 2216 5.609423 ACCAGCTTTATCTATGAGAAGCAG 58.391 41.667 15.60 10.31 45.17 4.24
2178 2217 5.620738 ACCAGCTTTATCTATGAGAAGCA 57.379 39.130 15.60 0.00 45.17 3.91
2179 2218 6.934048 AAACCAGCTTTATCTATGAGAAGC 57.066 37.500 9.13 9.13 43.57 3.86
2229 2268 8.116026 AGGGTTTGAGGTAACATAAATCTGAAT 58.884 33.333 0.00 0.00 41.41 2.57
2436 2475 4.774726 GGCTGGATAGTAAGATCCTGATGA 59.225 45.833 12.07 0.00 45.07 2.92
2490 2529 2.992543 GTCAATATTTGCCTTTTGCGCA 59.007 40.909 5.66 5.66 45.60 6.09
2511 2550 3.559238 ATTACCTTTTTGACTGCTGCG 57.441 42.857 0.00 0.00 0.00 5.18
2557 2600 9.471702 AGAATATATTTTATCCAGGGCATTCTG 57.528 33.333 0.00 0.00 30.15 3.02
2558 2601 9.471702 CAGAATATATTTTATCCAGGGCATTCT 57.528 33.333 0.00 0.00 31.09 2.40
2559 2602 8.689972 CCAGAATATATTTTATCCAGGGCATTC 58.310 37.037 0.00 0.00 0.00 2.67
2560 2603 8.179487 ACCAGAATATATTTTATCCAGGGCATT 58.821 33.333 0.00 0.00 0.00 3.56
2715 2758 2.430694 TCCGACCATCATAGTGGAACAG 59.569 50.000 0.00 0.00 41.80 3.16
2814 2857 9.462174 CAAAAGAACTTGATAAACAATAGCACA 57.538 29.630 0.00 0.00 37.88 4.57
2835 2879 8.534778 GTCAAACAAATAGAAAGAGTGCAAAAG 58.465 33.333 0.00 0.00 0.00 2.27
2843 2887 6.539649 TGACGGTCAAACAAATAGAAAGAG 57.460 37.500 8.68 0.00 0.00 2.85
3008 3053 0.752658 AGCAAAGGAAACAAGGGTGC 59.247 50.000 0.00 0.00 0.00 5.01
3025 3071 2.034221 GAACACCAGGGGGACAGC 59.966 66.667 0.00 0.00 38.05 4.40
3026 3072 1.427072 AAGGAACACCAGGGGGACAG 61.427 60.000 0.00 0.00 38.05 3.51
3031 3077 0.326264 CTCAGAAGGAACACCAGGGG 59.674 60.000 0.00 0.00 0.00 4.79
3077 3123 4.631813 CCTAACAAGCTTGATGTACCTGAC 59.368 45.833 32.50 0.00 0.00 3.51
3237 3283 0.910088 AGGAACTGGTCTAGGTGGGC 60.910 60.000 0.00 0.00 37.18 5.36
3246 3292 6.381801 CAAAATGTCACATAAGGAACTGGTC 58.618 40.000 0.00 0.00 40.86 4.02
3266 3312 6.592607 CCTCGGTTACTCTGTATAAAGCAAAA 59.407 38.462 0.00 0.00 0.00 2.44
3311 3357 2.517919 GGTGGCAGATGGGGATCC 59.482 66.667 1.92 1.92 0.00 3.36
3314 3360 3.716195 CACGGTGGCAGATGGGGA 61.716 66.667 0.00 0.00 0.00 4.81
3389 3435 6.153756 TCTGCACATCAAATTGAATGTGAAG 58.846 36.000 26.88 25.76 46.80 3.02
3392 3438 6.237463 CGAATCTGCACATCAAATTGAATGTG 60.237 38.462 22.37 22.37 45.06 3.21
3484 3530 6.516739 TGACTAAGAGATCGAAATGACACT 57.483 37.500 0.00 0.00 0.00 3.55
3494 3540 6.333416 TCCAAACAAGATGACTAAGAGATCG 58.667 40.000 0.00 0.00 0.00 3.69
3521 3571 3.743911 TGTGTGAAAGTGTAAGCATACCG 59.256 43.478 0.00 0.00 0.00 4.02
3522 3572 4.755123 AGTGTGTGAAAGTGTAAGCATACC 59.245 41.667 0.00 0.00 0.00 2.73
3538 3588 2.802816 GTTCTGCAGGAAGTAGTGTGTG 59.197 50.000 15.13 0.00 34.23 3.82
3540 3590 2.061773 CGTTCTGCAGGAAGTAGTGTG 58.938 52.381 15.13 0.00 34.23 3.82
3541 3591 1.961394 TCGTTCTGCAGGAAGTAGTGT 59.039 47.619 15.13 0.00 34.23 3.55
3547 3597 2.154854 TCAAGTCGTTCTGCAGGAAG 57.845 50.000 15.13 7.93 34.23 3.46
3550 3600 1.338105 TGGATCAAGTCGTTCTGCAGG 60.338 52.381 15.13 0.00 0.00 4.85
3580 3630 5.355350 ACATTTCCTAAGAGCAAAATCGAGG 59.645 40.000 0.00 0.00 0.00 4.63
3618 3668 3.879295 TGGTCACTTTCAAGAGAGCAAAG 59.121 43.478 14.13 0.00 46.04 2.77
3622 3672 2.805099 CAGTGGTCACTTTCAAGAGAGC 59.195 50.000 8.68 8.68 42.10 4.09
3623 3673 4.065321 ACAGTGGTCACTTTCAAGAGAG 57.935 45.455 0.20 0.00 40.20 3.20
3638 3722 7.166167 AGGAGGTTAACTTAAATGTACAGTGG 58.834 38.462 5.42 0.00 0.00 4.00
3675 3759 6.717084 GGTCCCTAGCAATCAATTTAAGCTAT 59.283 38.462 0.00 0.00 37.20 2.97
3688 3772 2.868964 TCTACAGGGTCCCTAGCAAT 57.131 50.000 11.12 0.00 29.64 3.56
3689 3773 2.634639 TTCTACAGGGTCCCTAGCAA 57.365 50.000 11.12 0.00 29.64 3.91
3690 3774 2.771943 CAATTCTACAGGGTCCCTAGCA 59.228 50.000 11.12 0.00 29.64 3.49
3691 3775 2.104963 CCAATTCTACAGGGTCCCTAGC 59.895 54.545 11.12 0.00 29.64 3.42
3705 3789 2.047061 TGCTATCTACGCCCCAATTCT 58.953 47.619 0.00 0.00 0.00 2.40
3721 3805 3.381272 GCCAAACTTCCTATGCATTGCTA 59.619 43.478 3.54 0.00 0.00 3.49
3743 3827 5.652994 TTTGGATCAAAGGAATAAACCCG 57.347 39.130 0.00 0.00 0.00 5.28
3792 3876 6.260271 GGTTTTGTAGGATTACAGTCCATAGC 59.740 42.308 0.00 0.00 40.68 2.97
3913 3997 2.706190 AGATCACATAACTACAGCCCCC 59.294 50.000 0.00 0.00 0.00 5.40
3916 4000 5.975410 GTGAAGATCACATAACTACAGCC 57.025 43.478 5.65 0.00 46.22 4.85
3931 4015 4.706962 GGGGAAAGCATGTAAAGTGAAGAT 59.293 41.667 0.00 0.00 0.00 2.40
3957 4042 6.721208 AGTTCCAATCAGTAAAACATGGATGT 59.279 34.615 0.00 0.00 44.20 3.06
3959 4044 6.721208 ACAGTTCCAATCAGTAAAACATGGAT 59.279 34.615 0.00 0.00 36.87 3.41
3961 4046 6.331369 ACAGTTCCAATCAGTAAAACATGG 57.669 37.500 0.00 0.00 0.00 3.66
3967 4052 6.866770 CGAGTAGAACAGTTCCAATCAGTAAA 59.133 38.462 9.85 0.00 0.00 2.01
3975 4060 5.723672 AAGATCGAGTAGAACAGTTCCAA 57.276 39.130 9.85 0.00 0.00 3.53
3983 4069 9.903185 GCTGTTTAATTTAAGATCGAGTAGAAC 57.097 33.333 0.00 0.00 0.00 3.01
3986 4072 8.420374 TGGCTGTTTAATTTAAGATCGAGTAG 57.580 34.615 0.00 0.00 0.00 2.57
3992 4078 7.088589 TGAGCTGGCTGTTTAATTTAAGATC 57.911 36.000 0.00 0.00 0.00 2.75
3993 4079 7.340232 TCATGAGCTGGCTGTTTAATTTAAGAT 59.660 33.333 0.00 0.00 0.00 2.40
3995 4081 6.855836 TCATGAGCTGGCTGTTTAATTTAAG 58.144 36.000 0.00 0.00 0.00 1.85
3998 4084 5.012239 TCTCATGAGCTGGCTGTTTAATTT 58.988 37.500 18.36 0.00 0.00 1.82
4011 4098 5.075493 ACAACTCCAATTTTCTCATGAGCT 58.925 37.500 18.36 0.00 0.00 4.09
4038 4125 2.349590 TGATGAACAATCCACTGAGCG 58.650 47.619 0.00 0.00 34.00 5.03
4077 4164 4.771577 TGAAACGGTGACTATACCTGGTTA 59.228 41.667 3.84 0.00 38.62 2.85
4153 4241 1.533033 TCCGACTTGCCCTGACAGA 60.533 57.895 3.32 0.00 0.00 3.41
4157 4245 0.250234 CATTCTCCGACTTGCCCTGA 59.750 55.000 0.00 0.00 0.00 3.86
4258 4358 3.483808 TTTGTGTCACAGCATGGAGTA 57.516 42.857 5.67 0.00 43.62 2.59
4265 4365 4.915158 TGAATTGATTTGTGTCACAGCA 57.085 36.364 5.67 3.71 0.00 4.41
4268 4368 4.281435 AGGCATGAATTGATTTGTGTCACA 59.719 37.500 0.18 0.18 0.00 3.58
4269 4369 4.624024 CAGGCATGAATTGATTTGTGTCAC 59.376 41.667 0.00 0.00 0.00 3.67
4270 4370 4.281435 ACAGGCATGAATTGATTTGTGTCA 59.719 37.500 4.84 0.00 0.00 3.58
4285 4385 4.096382 GGTAAGTGTAAATCCACAGGCATG 59.904 45.833 0.00 0.00 37.82 4.06
4290 4390 4.562082 TGACGGTAAGTGTAAATCCACAG 58.438 43.478 0.00 0.00 37.82 3.66
4349 4452 1.439679 CCCACTCTTTTCTACACCGC 58.560 55.000 0.00 0.00 0.00 5.68
4516 4619 4.614946 TCATCATGAACGATACTGAGCAG 58.385 43.478 0.00 0.00 0.00 4.24
4536 4639 3.634397 AGTAGGCAGCTGCTATTTTCA 57.366 42.857 35.82 12.13 41.70 2.69
4537 4640 4.698575 ACTAGTAGGCAGCTGCTATTTTC 58.301 43.478 35.82 19.44 41.70 2.29
4538 4641 4.762289 ACTAGTAGGCAGCTGCTATTTT 57.238 40.909 35.82 20.38 41.70 1.82
4583 4686 7.219535 GCATCGGTACAATAATATACTACGTGG 59.780 40.741 0.00 0.00 0.00 4.94
4585 4688 7.094248 TGGCATCGGTACAATAATATACTACGT 60.094 37.037 0.00 0.00 0.00 3.57
4586 4689 7.219535 GTGGCATCGGTACAATAATATACTACG 59.780 40.741 0.00 0.00 0.00 3.51
4587 4690 8.248945 AGTGGCATCGGTACAATAATATACTAC 58.751 37.037 0.00 0.00 0.00 2.73
4593 4777 5.921976 CGTAAGTGGCATCGGTACAATAATA 59.078 40.000 0.00 0.00 0.00 0.98
4616 4800 6.749139 TCTAACTCATATTCTGAATCCACCG 58.251 40.000 6.10 0.00 32.14 4.94
4715 4904 4.716784 ACCTGCAGTGATACTTATCTTCCA 59.283 41.667 13.81 0.00 33.88 3.53
4717 4906 6.265649 TCCTACCTGCAGTGATACTTATCTTC 59.734 42.308 13.81 0.00 33.88 2.87
4718 4907 6.136857 TCCTACCTGCAGTGATACTTATCTT 58.863 40.000 13.81 0.00 33.88 2.40
4754 4943 1.800315 CCACAAGCGACGACTACCG 60.800 63.158 0.00 0.00 45.44 4.02
4868 5068 3.512516 ACTACGAGGCGGCGTACC 61.513 66.667 9.37 1.22 43.61 3.34
5020 5253 1.270550 GCAGCTGCAATACAACCAGTT 59.729 47.619 33.36 0.00 41.59 3.16
5021 5254 0.883833 GCAGCTGCAATACAACCAGT 59.116 50.000 33.36 0.00 41.59 4.00
5070 5303 1.585521 CGACGTCGCAGGGTATGAC 60.586 63.158 26.59 0.00 0.00 3.06
5110 5343 0.321387 TACGGGCAAAATGCGTACCA 60.321 50.000 0.00 0.00 46.21 3.25
5128 5364 1.980052 CCCAGAAGAAGCACGGGTA 59.020 57.895 0.00 0.00 31.80 3.69
5129 5365 2.750350 CCCAGAAGAAGCACGGGT 59.250 61.111 0.00 0.00 31.80 5.28
5258 5590 1.227823 TCTGCTTTCCACCACGGTG 60.228 57.895 9.36 9.36 45.02 4.94
5259 5591 1.071471 CTCTGCTTTCCACCACGGT 59.929 57.895 0.00 0.00 35.57 4.83
5260 5592 0.951040 GACTCTGCTTTCCACCACGG 60.951 60.000 0.00 0.00 0.00 4.94
5261 5593 1.284982 CGACTCTGCTTTCCACCACG 61.285 60.000 0.00 0.00 0.00 4.94
5262 5594 0.249911 ACGACTCTGCTTTCCACCAC 60.250 55.000 0.00 0.00 0.00 4.16
5263 5595 1.000506 GTACGACTCTGCTTTCCACCA 59.999 52.381 0.00 0.00 0.00 4.17
5264 5596 1.672145 GGTACGACTCTGCTTTCCACC 60.672 57.143 0.00 0.00 0.00 4.61
5265 5597 1.672145 GGGTACGACTCTGCTTTCCAC 60.672 57.143 0.00 0.00 0.00 4.02
5266 5598 0.606604 GGGTACGACTCTGCTTTCCA 59.393 55.000 0.00 0.00 0.00 3.53
5267 5599 0.896226 AGGGTACGACTCTGCTTTCC 59.104 55.000 0.00 0.00 0.00 3.13
5268 5600 1.135053 GGAGGGTACGACTCTGCTTTC 60.135 57.143 13.73 0.00 33.86 2.62
5269 5601 0.896226 GGAGGGTACGACTCTGCTTT 59.104 55.000 13.73 0.00 33.86 3.51
5270 5602 1.313812 CGGAGGGTACGACTCTGCTT 61.314 60.000 13.73 0.00 34.57 3.91
5271 5603 1.749638 CGGAGGGTACGACTCTGCT 60.750 63.158 13.73 0.00 34.57 4.24
5272 5604 2.799371 CGGAGGGTACGACTCTGC 59.201 66.667 13.73 0.00 33.24 4.26
5334 5666 2.594592 GCTGCTTTCCACCACGGT 60.595 61.111 0.00 0.00 35.57 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.