Multiple sequence alignment - TraesCS3A01G415100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G415100 chr3A 100.000 3197 0 0 1 3197 658598727 658595531 0.000000e+00 5904.0
1 TraesCS3A01G415100 chr3A 89.474 285 29 1 2908 3191 325450690 325450406 3.030000e-95 359.0
2 TraesCS3A01G415100 chr3A 84.615 377 36 13 1473 1839 6710761 6711125 3.920000e-94 355.0
3 TraesCS3A01G415100 chr3B 90.297 2556 131 45 4 2513 690720119 690717635 0.000000e+00 3238.0
4 TraesCS3A01G415100 chr3B 91.682 553 44 2 2646 3196 690717575 690717023 0.000000e+00 765.0
5 TraesCS3A01G415100 chr3B 89.076 119 12 1 2499 2617 41021915 41022032 2.570000e-31 147.0
6 TraesCS3A01G415100 chr3B 87.931 58 5 2 2729 2785 41798527 41798583 2.060000e-07 67.6
7 TraesCS3A01G415100 chr3B 87.931 58 5 2 2729 2785 42049993 42049937 2.060000e-07 67.6
8 TraesCS3A01G415100 chr3D 90.732 2255 117 36 1 2197 523635882 523633662 0.000000e+00 2922.0
9 TraesCS3A01G415100 chr3D 82.908 784 101 19 1059 1839 211943429 211944182 0.000000e+00 675.0
10 TraesCS3A01G415100 chr3D 90.106 283 25 3 2908 3188 277795781 277796062 6.520000e-97 364.0
11 TraesCS3A01G415100 chr3D 90.106 283 25 3 2908 3188 601908860 601908579 6.520000e-97 364.0
12 TraesCS3A01G415100 chr3D 88.976 127 11 3 2493 2618 571704732 571704856 1.540000e-33 154.0
13 TraesCS3A01G415100 chr3D 76.418 335 36 25 228 531 523641718 523641396 1.200000e-29 141.0
14 TraesCS3A01G415100 chr6D 82.886 783 104 17 1059 1839 436513818 436513064 0.000000e+00 676.0
15 TraesCS3A01G415100 chr6D 89.076 119 13 0 2501 2619 7489859 7489741 7.150000e-32 148.0
16 TraesCS3A01G415100 chr6D 89.076 119 13 0 2501 2619 7493784 7493666 7.150000e-32 148.0
17 TraesCS3A01G415100 chr6D 87.597 129 15 1 2501 2628 7499199 7499071 7.150000e-32 148.0
18 TraesCS3A01G415100 chr7D 82.375 783 108 16 1059 1839 48463013 48463767 0.000000e+00 654.0
19 TraesCS3A01G415100 chr7D 90.106 283 27 1 2908 3189 260004516 260004234 1.810000e-97 366.0
20 TraesCS3A01G415100 chr2D 85.377 424 46 9 1418 1839 187733870 187733461 2.950000e-115 425.0
21 TraesCS3A01G415100 chr2D 89.716 282 28 1 2908 3188 303806430 303806149 3.030000e-95 359.0
22 TraesCS3A01G415100 chr2D 91.379 116 8 2 2510 2625 67702558 67702671 1.190000e-34 158.0
23 TraesCS3A01G415100 chr7A 91.166 283 23 2 2908 3189 283117004 283116723 1.800000e-102 383.0
24 TraesCS3A01G415100 chr2A 84.615 377 36 13 1473 1839 409138399 409138763 3.920000e-94 355.0
25 TraesCS3A01G415100 chr6B 89.399 283 27 3 2908 3188 547866976 547866695 1.410000e-93 353.0
26 TraesCS3A01G415100 chr4D 89.362 282 29 1 2905 3185 343442012 343442293 1.410000e-93 353.0
27 TraesCS3A01G415100 chr4A 84.350 377 37 13 1473 1839 16885935 16885571 1.820000e-92 350.0
28 TraesCS3A01G415100 chr2B 92.593 108 8 0 2510 2617 175076691 175076798 4.270000e-34 156.0
29 TraesCS3A01G415100 chr1B 91.071 112 10 0 2508 2619 329950972 329951083 5.520000e-33 152.0
30 TraesCS3A01G415100 chr1D 89.076 119 12 1 2505 2623 81283724 81283607 2.570000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G415100 chr3A 658595531 658598727 3196 True 5904.0 5904 100.0000 1 3197 1 chr3A.!!$R2 3196
1 TraesCS3A01G415100 chr3B 690717023 690720119 3096 True 2001.5 3238 90.9895 4 3196 2 chr3B.!!$R2 3192
2 TraesCS3A01G415100 chr3D 523633662 523635882 2220 True 2922.0 2922 90.7320 1 2197 1 chr3D.!!$R1 2196
3 TraesCS3A01G415100 chr3D 211943429 211944182 753 False 675.0 675 82.9080 1059 1839 1 chr3D.!!$F1 780
4 TraesCS3A01G415100 chr6D 436513064 436513818 754 True 676.0 676 82.8860 1059 1839 1 chr6D.!!$R2 780
5 TraesCS3A01G415100 chr7D 48463013 48463767 754 False 654.0 654 82.3750 1059 1839 1 chr7D.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 135 0.107654 GTCGTGGGGATGGAAGGAAG 60.108 60.0 0.0 0.0 0.0 3.46 F
1415 1478 0.240145 ACGATCAAGCAAGACGACGA 59.760 50.0 0.0 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 1929 0.329596 AGGACCATCTTCACCTTGGC 59.67 55.0 0.0 0.0 33.66 4.52 R
2835 2951 0.249868 ATATGACACATGGACCCGCG 60.25 55.0 0.0 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.774878 ATTATCGTCATCGCTGATCATTG 57.225 39.130 0.00 0.00 36.96 2.82
44 45 3.921021 GGATCTGTCTGAACGTAACAGTG 59.079 47.826 17.84 11.68 40.94 3.66
45 46 3.364889 TCTGTCTGAACGTAACAGTGG 57.635 47.619 17.84 11.40 40.94 4.00
115 132 2.590092 GGTCGTGGGGATGGAAGG 59.410 66.667 0.00 0.00 0.00 3.46
116 133 1.993391 GGTCGTGGGGATGGAAGGA 60.993 63.158 0.00 0.00 0.00 3.36
117 134 1.559065 GGTCGTGGGGATGGAAGGAA 61.559 60.000 0.00 0.00 0.00 3.36
118 135 0.107654 GTCGTGGGGATGGAAGGAAG 60.108 60.000 0.00 0.00 0.00 3.46
180 197 2.969238 CCGCAGGCATCCATCGTC 60.969 66.667 0.00 0.00 46.14 4.20
181 198 2.969238 CGCAGGCATCCATCGTCC 60.969 66.667 0.00 0.00 0.00 4.79
182 199 2.507944 GCAGGCATCCATCGTCCT 59.492 61.111 0.00 0.00 0.00 3.85
183 200 1.596477 GCAGGCATCCATCGTCCTC 60.596 63.158 0.00 0.00 0.00 3.71
184 201 2.037620 GCAGGCATCCATCGTCCTCT 62.038 60.000 0.00 0.00 0.00 3.69
237 254 2.097466 CGAGCGCTCCCATTTAAAATGT 59.903 45.455 30.66 0.00 0.00 2.71
308 325 0.542938 AAAAGAAAGCCCAGCTCCCC 60.543 55.000 0.00 0.00 38.25 4.81
309 326 2.771328 AAAGAAAGCCCAGCTCCCCG 62.771 60.000 0.00 0.00 38.25 5.73
321 348 1.890174 CTCCCCGTGCCCAATTTTC 59.110 57.895 0.00 0.00 0.00 2.29
326 353 1.291906 CGTGCCCAATTTTCCCCAC 59.708 57.895 0.00 0.00 0.00 4.61
329 356 1.911269 GCCCAATTTTCCCCACGGT 60.911 57.895 0.00 0.00 0.00 4.83
385 424 2.909965 TGTGCCGCCCCAGAAAAC 60.910 61.111 0.00 0.00 0.00 2.43
399 438 1.070289 AGAAAACCCCACGACAGAGAC 59.930 52.381 0.00 0.00 0.00 3.36
401 440 1.052124 AAACCCCACGACAGAGACCA 61.052 55.000 0.00 0.00 0.00 4.02
418 457 1.676006 ACCACTTTCGAGCAGGTTTTG 59.324 47.619 0.00 0.00 0.00 2.44
441 484 1.639298 GCGCTTTTGAGCATCGTCCT 61.639 55.000 0.00 0.00 44.77 3.85
568 624 1.076533 CGCAACGGCTACAGTACAGG 61.077 60.000 0.00 0.00 38.10 4.00
569 625 0.245539 GCAACGGCTACAGTACAGGA 59.754 55.000 0.00 0.00 36.96 3.86
570 626 1.736032 GCAACGGCTACAGTACAGGAG 60.736 57.143 0.00 0.00 36.96 3.69
609 666 2.225624 CCCCCTTTCCCTCCAAAATTCT 60.226 50.000 0.00 0.00 0.00 2.40
610 667 3.099905 CCCCTTTCCCTCCAAAATTCTC 58.900 50.000 0.00 0.00 0.00 2.87
613 670 2.919772 TTCCCTCCAAAATTCTCCCC 57.080 50.000 0.00 0.00 0.00 4.81
780 837 4.811364 GCTTCCAGCTCCCAGGCC 62.811 72.222 0.00 0.00 38.45 5.19
1146 1209 3.827898 CAGGAGGTCGACGAGCCC 61.828 72.222 22.47 21.18 0.00 5.19
1413 1476 0.716108 CCACGATCAAGCAAGACGAC 59.284 55.000 0.00 0.00 0.00 4.34
1414 1477 0.363512 CACGATCAAGCAAGACGACG 59.636 55.000 0.00 0.00 0.00 5.12
1415 1478 0.240145 ACGATCAAGCAAGACGACGA 59.760 50.000 0.00 0.00 0.00 4.20
1512 1585 4.778415 CAGGGGTCGACGTCGCAG 62.778 72.222 32.19 11.87 39.60 5.18
1589 1669 3.068691 CTTCCTCTCGCCGGACCA 61.069 66.667 5.05 0.00 0.00 4.02
1849 1929 2.819595 CCATCACGAGCCCCAACG 60.820 66.667 0.00 0.00 0.00 4.10
2205 2285 1.495878 CACGCTGCTGACCTCATATC 58.504 55.000 0.00 0.00 0.00 1.63
2275 2355 5.952526 TTACTGAAGAAATTCCGGGTTTC 57.047 39.130 19.37 19.37 36.15 2.78
2281 2361 3.483421 AGAAATTCCGGGTTTCTTTCGT 58.517 40.909 22.25 7.61 41.75 3.85
2282 2362 3.501062 AGAAATTCCGGGTTTCTTTCGTC 59.499 43.478 22.25 4.68 41.75 4.20
2283 2363 2.853235 ATTCCGGGTTTCTTTCGTCT 57.147 45.000 0.00 0.00 0.00 4.18
2284 2364 1.873698 TTCCGGGTTTCTTTCGTCTG 58.126 50.000 0.00 0.00 0.00 3.51
2337 2417 3.502488 GGAGGATGCCTGGTAGTATAGGT 60.502 52.174 0.00 0.00 36.44 3.08
2372 2452 9.878599 AAACTAATTCAGAAATTGTTCACGTAG 57.121 29.630 0.00 0.00 35.84 3.51
2379 2459 7.827701 TCAGAAATTGTTCACGTAGAGACTAT 58.172 34.615 0.00 0.00 36.09 2.12
2424 2504 6.754675 TCACGAATGTAGTATGTGTTATGTGG 59.245 38.462 0.00 0.00 32.55 4.17
2428 2508 3.778075 TGTAGTATGTGTTATGTGGGGCT 59.222 43.478 0.00 0.00 0.00 5.19
2443 2523 2.775384 TGGGGCTGAAGGATATAAACGT 59.225 45.455 0.00 0.00 0.00 3.99
2478 2561 5.008712 GGATTCCTGTTTTCTCGACAAGTTT 59.991 40.000 0.00 0.00 0.00 2.66
2482 2565 8.665643 TTCCTGTTTTCTCGACAAGTTTAATA 57.334 30.769 0.00 0.00 0.00 0.98
2484 2567 8.932791 TCCTGTTTTCTCGACAAGTTTAATATC 58.067 33.333 0.00 0.00 0.00 1.63
2486 2569 7.735500 TGTTTTCTCGACAAGTTTAATATCCG 58.264 34.615 0.00 0.00 0.00 4.18
2492 2575 8.028354 TCTCGACAAGTTTAATATCCGTAAACA 58.972 33.333 9.92 0.00 41.75 2.83
2510 2593 8.665685 CCGTAAACAAAAAGCAGACTAATATCT 58.334 33.333 0.00 0.00 0.00 1.98
2515 2598 8.950208 ACAAAAAGCAGACTAATATCTACTCC 57.050 34.615 0.00 0.00 0.00 3.85
2516 2599 8.763601 ACAAAAAGCAGACTAATATCTACTCCT 58.236 33.333 0.00 0.00 0.00 3.69
2517 2600 9.606631 CAAAAAGCAGACTAATATCTACTCCTT 57.393 33.333 0.00 0.00 0.00 3.36
2518 2601 9.825109 AAAAAGCAGACTAATATCTACTCCTTC 57.175 33.333 0.00 0.00 0.00 3.46
2519 2602 8.776061 AAAGCAGACTAATATCTACTCCTTCT 57.224 34.615 0.00 0.00 0.00 2.85
2520 2603 7.759489 AGCAGACTAATATCTACTCCTTCTG 57.241 40.000 0.00 0.00 0.00 3.02
2521 2604 7.294584 AGCAGACTAATATCTACTCCTTCTGT 58.705 38.462 0.00 0.00 32.31 3.41
2522 2605 7.782644 AGCAGACTAATATCTACTCCTTCTGTT 59.217 37.037 0.00 0.00 32.31 3.16
2523 2606 8.079809 GCAGACTAATATCTACTCCTTCTGTTC 58.920 40.741 0.00 0.00 32.31 3.18
2524 2607 8.573035 CAGACTAATATCTACTCCTTCTGTTCC 58.427 40.741 0.00 0.00 0.00 3.62
2525 2608 7.446013 AGACTAATATCTACTCCTTCTGTTCCG 59.554 40.741 0.00 0.00 0.00 4.30
2526 2609 7.288560 ACTAATATCTACTCCTTCTGTTCCGA 58.711 38.462 0.00 0.00 0.00 4.55
2527 2610 7.778853 ACTAATATCTACTCCTTCTGTTCCGAA 59.221 37.037 0.00 0.00 0.00 4.30
2528 2611 7.604657 AATATCTACTCCTTCTGTTCCGAAT 57.395 36.000 0.00 0.00 0.00 3.34
2529 2612 5.941555 ATCTACTCCTTCTGTTCCGAATT 57.058 39.130 0.00 0.00 0.00 2.17
2530 2613 8.707796 ATATCTACTCCTTCTGTTCCGAATTA 57.292 34.615 0.00 0.00 0.00 1.40
2531 2614 7.604657 ATCTACTCCTTCTGTTCCGAATTAT 57.395 36.000 0.00 0.00 0.00 1.28
2532 2615 7.419711 TCTACTCCTTCTGTTCCGAATTATT 57.580 36.000 0.00 0.00 0.00 1.40
2533 2616 7.848128 TCTACTCCTTCTGTTCCGAATTATTT 58.152 34.615 0.00 0.00 0.00 1.40
2534 2617 6.743575 ACTCCTTCTGTTCCGAATTATTTG 57.256 37.500 0.00 0.00 0.00 2.32
2535 2618 6.238648 ACTCCTTCTGTTCCGAATTATTTGT 58.761 36.000 0.00 0.00 0.00 2.83
2536 2619 6.371825 ACTCCTTCTGTTCCGAATTATTTGTC 59.628 38.462 0.00 0.00 0.00 3.18
2537 2620 5.350365 TCCTTCTGTTCCGAATTATTTGTCG 59.650 40.000 0.00 0.00 37.01 4.35
2538 2621 5.350365 CCTTCTGTTCCGAATTATTTGTCGA 59.650 40.000 0.00 0.00 39.64 4.20
2539 2622 6.128391 CCTTCTGTTCCGAATTATTTGTCGAA 60.128 38.462 0.00 0.00 39.64 3.71
2540 2623 6.403333 TCTGTTCCGAATTATTTGTCGAAG 57.597 37.500 0.00 0.00 39.64 3.79
2541 2624 5.350365 TCTGTTCCGAATTATTTGTCGAAGG 59.650 40.000 0.00 0.00 39.64 3.46
2542 2625 4.998672 TGTTCCGAATTATTTGTCGAAGGT 59.001 37.500 0.00 0.00 39.64 3.50
2543 2626 6.164876 TGTTCCGAATTATTTGTCGAAGGTA 58.835 36.000 0.00 0.00 39.64 3.08
2544 2627 6.819649 TGTTCCGAATTATTTGTCGAAGGTAT 59.180 34.615 0.00 0.00 39.64 2.73
2545 2628 6.838198 TCCGAATTATTTGTCGAAGGTATG 57.162 37.500 0.00 0.00 39.64 2.39
2546 2629 6.575267 TCCGAATTATTTGTCGAAGGTATGA 58.425 36.000 0.00 0.00 39.64 2.15
2547 2630 7.042950 TCCGAATTATTTGTCGAAGGTATGAA 58.957 34.615 0.00 0.00 39.64 2.57
2548 2631 7.713507 TCCGAATTATTTGTCGAAGGTATGAAT 59.286 33.333 0.00 0.00 39.64 2.57
2549 2632 7.798516 CCGAATTATTTGTCGAAGGTATGAATG 59.201 37.037 0.00 0.00 39.64 2.67
2550 2633 8.335356 CGAATTATTTGTCGAAGGTATGAATGT 58.665 33.333 0.00 0.00 39.64 2.71
2557 2640 9.878667 TTTGTCGAAGGTATGAATGTATTTAGA 57.121 29.630 0.00 0.00 0.00 2.10
2559 2642 9.476202 TGTCGAAGGTATGAATGTATTTAGATG 57.524 33.333 0.00 0.00 0.00 2.90
2560 2643 9.477484 GTCGAAGGTATGAATGTATTTAGATGT 57.523 33.333 0.00 0.00 0.00 3.06
2592 2675 9.125026 AGTTTTAGATACATCCATTTCCATGAC 57.875 33.333 0.00 0.00 31.07 3.06
2593 2676 7.728847 TTTAGATACATCCATTTCCATGACG 57.271 36.000 0.00 0.00 31.07 4.35
2594 2677 5.551305 AGATACATCCATTTCCATGACGA 57.449 39.130 0.00 0.00 31.07 4.20
2595 2678 5.545588 AGATACATCCATTTCCATGACGAG 58.454 41.667 0.00 0.00 31.07 4.18
2596 2679 3.634397 ACATCCATTTCCATGACGAGT 57.366 42.857 0.00 0.00 31.07 4.18
2597 2680 4.753516 ACATCCATTTCCATGACGAGTA 57.246 40.909 0.00 0.00 31.07 2.59
2598 2681 5.097742 ACATCCATTTCCATGACGAGTAA 57.902 39.130 0.00 0.00 31.07 2.24
2599 2682 5.684704 ACATCCATTTCCATGACGAGTAAT 58.315 37.500 0.00 0.00 31.07 1.89
2600 2683 6.122277 ACATCCATTTCCATGACGAGTAATT 58.878 36.000 0.00 0.00 31.07 1.40
2601 2684 6.603201 ACATCCATTTCCATGACGAGTAATTT 59.397 34.615 0.00 0.00 31.07 1.82
2602 2685 7.773224 ACATCCATTTCCATGACGAGTAATTTA 59.227 33.333 0.00 0.00 31.07 1.40
2603 2686 7.786178 TCCATTTCCATGACGAGTAATTTAG 57.214 36.000 0.00 0.00 31.07 1.85
2604 2687 7.561251 TCCATTTCCATGACGAGTAATTTAGA 58.439 34.615 0.00 0.00 31.07 2.10
2605 2688 8.044309 TCCATTTCCATGACGAGTAATTTAGAA 58.956 33.333 0.00 0.00 31.07 2.10
2606 2689 8.122952 CCATTTCCATGACGAGTAATTTAGAAC 58.877 37.037 0.00 0.00 31.07 3.01
2607 2690 6.880822 TTCCATGACGAGTAATTTAGAACG 57.119 37.500 0.00 0.00 0.00 3.95
2608 2691 5.345702 TCCATGACGAGTAATTTAGAACGG 58.654 41.667 0.00 0.00 0.00 4.44
2609 2692 5.125900 TCCATGACGAGTAATTTAGAACGGA 59.874 40.000 0.00 0.00 0.00 4.69
2610 2693 5.459107 CCATGACGAGTAATTTAGAACGGAG 59.541 44.000 0.00 0.00 0.00 4.63
2611 2694 4.990257 TGACGAGTAATTTAGAACGGAGG 58.010 43.478 0.00 0.00 0.00 4.30
2612 2695 4.142315 TGACGAGTAATTTAGAACGGAGGG 60.142 45.833 0.00 0.00 0.00 4.30
2613 2696 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
2614 2697 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
2617 2700 6.016443 CGAGTAATTTAGAACGGAGGGAGTAT 60.016 42.308 0.00 0.00 0.00 2.12
2632 2715 7.428826 GGAGGGAGTATGATTTTGCTTAAATG 58.571 38.462 2.70 0.00 36.59 2.32
2644 2727 3.076621 TGCTTAAATGTCAGTCAGCTGG 58.923 45.455 15.13 0.00 42.78 4.85
2662 2777 1.371558 GGATCATGCGGGAGGGTAC 59.628 63.158 0.00 0.00 0.00 3.34
2671 2786 1.150827 CGGGAGGGTACGTTTTGTTC 58.849 55.000 0.00 0.00 0.00 3.18
2712 2827 7.041372 CCGGAGTTCTTGAAACAGAAAAATCTA 60.041 37.037 0.00 0.00 34.50 1.98
2759 2874 1.893137 GTCCAATCAAACCCCAACCTC 59.107 52.381 0.00 0.00 0.00 3.85
2766 2881 2.969262 TCAAACCCCAACCTCAAAATCC 59.031 45.455 0.00 0.00 0.00 3.01
2767 2882 2.703007 CAAACCCCAACCTCAAAATCCA 59.297 45.455 0.00 0.00 0.00 3.41
2781 2896 4.462483 TCAAAATCCATGAAACTAGCACCC 59.538 41.667 0.00 0.00 0.00 4.61
2793 2908 2.442502 ACTAGCACCCCGTACTCTCTAT 59.557 50.000 0.00 0.00 0.00 1.98
2808 2923 5.112686 ACTCTCTATTTCTGACAATTCCGC 58.887 41.667 0.00 0.00 0.00 5.54
2812 2928 0.958382 TTTCTGACAATTCCGCGGGG 60.958 55.000 27.83 13.31 0.00 5.73
2816 2932 2.359478 ACAATTCCGCGGGGTCAC 60.359 61.111 27.83 0.00 33.83 3.67
2822 2938 1.828461 TTCCGCGGGGTCACACATTA 61.828 55.000 27.83 0.00 33.83 1.90
2825 2941 0.672401 CGCGGGGTCACACATTACTT 60.672 55.000 0.00 0.00 0.00 2.24
2835 2951 6.147328 GGGTCACACATTACTTTCACTTACTC 59.853 42.308 0.00 0.00 0.00 2.59
2883 2999 3.761752 TGCTAGTTAAGGGCATTTCCAAC 59.238 43.478 0.00 0.00 36.21 3.77
2891 3007 0.893727 GGCATTTCCAACACCGACCT 60.894 55.000 0.00 0.00 34.01 3.85
2906 3022 5.109903 CACCGACCTGTAAATTCTCTTAGG 58.890 45.833 0.00 0.00 0.00 2.69
2914 3030 5.684704 TGTAAATTCTCTTAGGCATCCCAG 58.315 41.667 0.00 0.00 0.00 4.45
2952 3068 3.736252 ACTGAGAAACGTGAAAGACATCG 59.264 43.478 0.00 0.00 0.00 3.84
2959 3075 3.050619 ACGTGAAAGACATCGTGAACTC 58.949 45.455 0.00 0.00 35.93 3.01
2960 3076 2.408704 CGTGAAAGACATCGTGAACTCC 59.591 50.000 0.00 0.00 0.00 3.85
2974 3090 2.897326 TGAACTCCTGACAATCCTTCGA 59.103 45.455 0.00 0.00 0.00 3.71
2976 3092 4.020218 TGAACTCCTGACAATCCTTCGAAT 60.020 41.667 0.00 0.00 0.00 3.34
2977 3093 3.866651 ACTCCTGACAATCCTTCGAATG 58.133 45.455 0.00 0.00 0.00 2.67
2984 3100 4.877823 TGACAATCCTTCGAATGATTCCAG 59.122 41.667 21.32 14.74 0.00 3.86
3008 3124 4.371855 TGTATGCAACTTCTCCTCTACG 57.628 45.455 0.00 0.00 0.00 3.51
3026 3142 7.333423 TCCTCTACGTTCAAGAATTTTGTATGG 59.667 37.037 0.00 0.00 0.00 2.74
3033 3149 7.012894 CGTTCAAGAATTTTGTATGGGCCTATA 59.987 37.037 4.39 4.39 0.00 1.31
3072 3189 4.911514 TCTTTAACACCAAACCTCTTGC 57.088 40.909 0.00 0.00 0.00 4.01
3079 3196 1.494721 ACCAAACCTCTTGCTTCCTCA 59.505 47.619 0.00 0.00 0.00 3.86
3123 3240 1.136147 CGGTCTCCCACTTCGTACG 59.864 63.158 9.53 9.53 0.00 3.67
3153 3270 4.318546 CCTTGCGTTTACTATCGGCATAAC 60.319 45.833 0.00 0.00 0.00 1.89
3164 3281 6.062749 ACTATCGGCATAACTCTTCTGTCTA 58.937 40.000 0.00 0.00 0.00 2.59
3169 3286 5.527951 CGGCATAACTCTTCTGTCTAGACTA 59.472 44.000 23.01 9.20 31.21 2.59
3192 3309 3.387374 AGCTATCTTGAGTCTGTCATGGG 59.613 47.826 0.00 0.00 34.17 4.00
3196 3313 2.300152 TCTTGAGTCTGTCATGGGTCAC 59.700 50.000 0.00 0.00 34.17 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.921021 CACTGTTACGTTCAGACAGATCC 59.079 47.826 21.42 0.00 42.54 3.36
44 45 2.315386 GGAACGAACGGTGTCTGCC 61.315 63.158 0.00 0.00 0.00 4.85
45 46 2.315386 GGGAACGAACGGTGTCTGC 61.315 63.158 0.00 0.00 0.00 4.26
86 99 4.446413 ACGACCGCGGATTCCCAC 62.446 66.667 35.90 12.10 43.17 4.61
115 132 3.057596 CGGAGATGAGATGCTAGGTCTTC 60.058 52.174 0.00 0.00 0.00 2.87
116 133 2.890311 CGGAGATGAGATGCTAGGTCTT 59.110 50.000 0.00 0.00 0.00 3.01
117 134 2.513753 CGGAGATGAGATGCTAGGTCT 58.486 52.381 0.00 0.00 0.00 3.85
118 135 1.543802 CCGGAGATGAGATGCTAGGTC 59.456 57.143 0.00 0.00 0.00 3.85
122 139 1.188219 GGCCCGGAGATGAGATGCTA 61.188 60.000 0.73 0.00 0.00 3.49
174 191 2.266554 GCTGTGAAGAAGAGGACGATG 58.733 52.381 0.00 0.00 0.00 3.84
175 192 1.135257 CGCTGTGAAGAAGAGGACGAT 60.135 52.381 0.00 0.00 0.00 3.73
176 193 0.241213 CGCTGTGAAGAAGAGGACGA 59.759 55.000 0.00 0.00 0.00 4.20
178 195 1.989430 CTCGCTGTGAAGAAGAGGAC 58.011 55.000 0.00 0.00 0.00 3.85
179 196 0.244994 GCTCGCTGTGAAGAAGAGGA 59.755 55.000 0.00 0.00 0.00 3.71
180 197 0.037882 TGCTCGCTGTGAAGAAGAGG 60.038 55.000 0.00 0.00 0.00 3.69
181 198 1.066914 GTGCTCGCTGTGAAGAAGAG 58.933 55.000 0.00 0.00 0.00 2.85
182 199 0.319900 GGTGCTCGCTGTGAAGAAGA 60.320 55.000 0.00 0.00 0.00 2.87
183 200 1.621301 CGGTGCTCGCTGTGAAGAAG 61.621 60.000 0.00 0.00 0.00 2.85
184 201 1.664649 CGGTGCTCGCTGTGAAGAA 60.665 57.895 0.00 0.00 0.00 2.52
237 254 3.255642 TGAACGTCTGAGTGATGTGATGA 59.744 43.478 0.00 0.00 43.56 2.92
308 325 1.291906 GTGGGGAAAATTGGGCACG 59.708 57.895 0.00 0.00 0.00 5.34
309 326 1.291906 CGTGGGGAAAATTGGGCAC 59.708 57.895 0.00 0.00 0.00 5.01
321 348 2.035626 ATGGAAAGCACCGTGGGG 59.964 61.111 0.00 0.00 40.11 4.96
326 353 2.086869 ACAATCTGATGGAAAGCACCG 58.913 47.619 0.00 0.00 0.00 4.94
385 424 1.472662 AAGTGGTCTCTGTCGTGGGG 61.473 60.000 0.00 0.00 0.00 4.96
399 438 2.405892 CAAAACCTGCTCGAAAGTGG 57.594 50.000 0.00 0.00 0.00 4.00
568 624 2.937149 GGCAAGGAAGGTATCGTTTCTC 59.063 50.000 0.00 0.00 34.01 2.87
569 625 2.355818 GGGCAAGGAAGGTATCGTTTCT 60.356 50.000 0.00 0.00 34.01 2.52
570 626 2.014857 GGGCAAGGAAGGTATCGTTTC 58.985 52.381 0.00 0.00 34.01 2.78
613 670 0.753848 GAGAAGAGGAGGAGGACGGG 60.754 65.000 0.00 0.00 0.00 5.28
773 830 1.764054 AGCTAGCTACAGGCCTGGG 60.764 63.158 35.42 26.71 43.05 4.45
888 945 4.778415 CCGTGGTGTCGAGCCGAG 62.778 72.222 0.00 0.00 36.23 4.63
1034 1091 3.138798 GCTGGCGGTAGGAGACGA 61.139 66.667 0.00 0.00 0.00 4.20
1126 1189 2.766400 GCTCGTCGACCTCCTGGAG 61.766 68.421 17.02 17.02 37.04 3.86
1475 1547 1.077716 TGATCATGCTGCTGCTGCT 60.078 52.632 27.67 11.28 40.48 4.24
1476 1548 1.064296 GTGATCATGCTGCTGCTGC 59.936 57.895 22.51 22.51 40.48 5.25
1477 1549 1.029947 TGGTGATCATGCTGCTGCTG 61.030 55.000 17.00 11.94 40.48 4.41
1485 1557 1.524621 CGACCCCTGGTGATCATGC 60.525 63.158 0.00 0.00 35.25 4.06
1589 1669 4.314440 TGCGCTTCTTCCTGCCGT 62.314 61.111 9.73 0.00 0.00 5.68
1849 1929 0.329596 AGGACCATCTTCACCTTGGC 59.670 55.000 0.00 0.00 33.66 4.52
2061 2141 1.179814 ACTTCCCGACGAGCTTGAGT 61.180 55.000 8.31 0.00 0.00 3.41
2246 2326 7.668469 ACCCGGAATTTCTTCAGTAATAAAGTT 59.332 33.333 0.73 0.00 32.70 2.66
2247 2327 7.173032 ACCCGGAATTTCTTCAGTAATAAAGT 58.827 34.615 0.73 0.00 32.70 2.66
2248 2328 7.625828 ACCCGGAATTTCTTCAGTAATAAAG 57.374 36.000 0.73 0.00 32.70 1.85
2249 2329 8.411991 AAACCCGGAATTTCTTCAGTAATAAA 57.588 30.769 0.73 0.00 32.70 1.40
2250 2330 7.886446 AGAAACCCGGAATTTCTTCAGTAATAA 59.114 33.333 21.50 0.00 42.46 1.40
2252 2332 6.246163 AGAAACCCGGAATTTCTTCAGTAAT 58.754 36.000 21.50 4.44 42.46 1.89
2372 2452 8.367943 TCGACAATACTTCTAGACATAGTCTC 57.632 38.462 2.48 0.00 42.40 3.36
2379 2459 6.093082 TCGTGATTCGACAATACTTCTAGACA 59.907 38.462 0.00 0.00 44.01 3.41
2424 2504 5.850614 TCTAACGTTTATATCCTTCAGCCC 58.149 41.667 5.91 0.00 0.00 5.19
2428 2508 5.364446 TGGGCTCTAACGTTTATATCCTTCA 59.636 40.000 5.91 0.00 0.00 3.02
2443 2523 2.562296 ACAGGAATCCTTGGGCTCTAA 58.438 47.619 0.00 0.00 0.00 2.10
2478 2561 8.556213 AGTCTGCTTTTTGTTTACGGATATTA 57.444 30.769 0.00 0.00 0.00 0.98
2482 2565 6.870971 TTAGTCTGCTTTTTGTTTACGGAT 57.129 33.333 0.00 0.00 0.00 4.18
2484 2567 8.665685 AGATATTAGTCTGCTTTTTGTTTACGG 58.334 33.333 0.00 0.00 0.00 4.02
2492 2575 9.825109 GAAGGAGTAGATATTAGTCTGCTTTTT 57.175 33.333 0.00 0.00 40.59 1.94
2510 2593 7.391620 ACAAATAATTCGGAACAGAAGGAGTA 58.608 34.615 0.00 0.00 33.19 2.59
2511 2594 6.238648 ACAAATAATTCGGAACAGAAGGAGT 58.761 36.000 0.00 0.00 33.19 3.85
2512 2595 6.455646 CGACAAATAATTCGGAACAGAAGGAG 60.456 42.308 0.00 0.00 33.19 3.69
2513 2596 5.350365 CGACAAATAATTCGGAACAGAAGGA 59.650 40.000 0.00 0.00 33.19 3.36
2514 2597 5.350365 TCGACAAATAATTCGGAACAGAAGG 59.650 40.000 0.00 0.00 35.89 3.46
2515 2598 6.403333 TCGACAAATAATTCGGAACAGAAG 57.597 37.500 0.00 0.00 35.89 2.85
2516 2599 6.128391 CCTTCGACAAATAATTCGGAACAGAA 60.128 38.462 0.00 0.00 35.89 3.02
2517 2600 5.350365 CCTTCGACAAATAATTCGGAACAGA 59.650 40.000 0.00 0.00 35.89 3.41
2518 2601 5.121768 ACCTTCGACAAATAATTCGGAACAG 59.878 40.000 0.00 0.00 35.89 3.16
2519 2602 4.998672 ACCTTCGACAAATAATTCGGAACA 59.001 37.500 0.00 0.00 35.89 3.18
2520 2603 5.541098 ACCTTCGACAAATAATTCGGAAC 57.459 39.130 0.00 0.00 35.89 3.62
2521 2604 7.042950 TCATACCTTCGACAAATAATTCGGAA 58.957 34.615 0.00 0.00 35.89 4.30
2522 2605 6.575267 TCATACCTTCGACAAATAATTCGGA 58.425 36.000 0.00 0.00 35.89 4.55
2523 2606 6.838198 TCATACCTTCGACAAATAATTCGG 57.162 37.500 0.00 0.00 35.89 4.30
2524 2607 8.335356 ACATTCATACCTTCGACAAATAATTCG 58.665 33.333 0.00 0.00 36.55 3.34
2531 2614 9.878667 TCTAAATACATTCATACCTTCGACAAA 57.121 29.630 0.00 0.00 0.00 2.83
2533 2616 9.476202 CATCTAAATACATTCATACCTTCGACA 57.524 33.333 0.00 0.00 0.00 4.35
2534 2617 9.477484 ACATCTAAATACATTCATACCTTCGAC 57.523 33.333 0.00 0.00 0.00 4.20
2566 2649 9.125026 GTCATGGAAATGGATGTATCTAAAACT 57.875 33.333 0.00 0.00 0.00 2.66
2567 2650 8.070171 CGTCATGGAAATGGATGTATCTAAAAC 58.930 37.037 0.00 0.00 0.00 2.43
2568 2651 7.990314 TCGTCATGGAAATGGATGTATCTAAAA 59.010 33.333 0.00 0.00 0.00 1.52
2569 2652 7.505258 TCGTCATGGAAATGGATGTATCTAAA 58.495 34.615 0.00 0.00 0.00 1.85
2570 2653 7.061566 TCGTCATGGAAATGGATGTATCTAA 57.938 36.000 0.00 0.00 0.00 2.10
2571 2654 6.267699 ACTCGTCATGGAAATGGATGTATCTA 59.732 38.462 0.00 0.00 0.00 1.98
2572 2655 5.070981 ACTCGTCATGGAAATGGATGTATCT 59.929 40.000 0.00 0.00 0.00 1.98
2573 2656 5.300752 ACTCGTCATGGAAATGGATGTATC 58.699 41.667 0.00 0.00 0.00 2.24
2574 2657 5.296151 ACTCGTCATGGAAATGGATGTAT 57.704 39.130 0.00 0.00 0.00 2.29
2575 2658 4.753516 ACTCGTCATGGAAATGGATGTA 57.246 40.909 0.00 0.00 0.00 2.29
2576 2659 3.634397 ACTCGTCATGGAAATGGATGT 57.366 42.857 0.00 0.00 0.00 3.06
2577 2660 6.624352 AATTACTCGTCATGGAAATGGATG 57.376 37.500 0.00 0.00 0.00 3.51
2578 2661 8.210946 TCTAAATTACTCGTCATGGAAATGGAT 58.789 33.333 0.00 0.00 0.00 3.41
2579 2662 7.561251 TCTAAATTACTCGTCATGGAAATGGA 58.439 34.615 0.00 0.00 0.00 3.41
2580 2663 7.786178 TCTAAATTACTCGTCATGGAAATGG 57.214 36.000 0.00 0.00 0.00 3.16
2581 2664 7.846107 CGTTCTAAATTACTCGTCATGGAAATG 59.154 37.037 0.00 0.00 0.00 2.32
2582 2665 7.011109 CCGTTCTAAATTACTCGTCATGGAAAT 59.989 37.037 0.00 0.00 0.00 2.17
2583 2666 6.311935 CCGTTCTAAATTACTCGTCATGGAAA 59.688 38.462 0.00 0.00 0.00 3.13
2584 2667 5.808540 CCGTTCTAAATTACTCGTCATGGAA 59.191 40.000 0.00 0.00 0.00 3.53
2585 2668 5.125900 TCCGTTCTAAATTACTCGTCATGGA 59.874 40.000 0.00 0.00 0.00 3.41
2586 2669 5.345702 TCCGTTCTAAATTACTCGTCATGG 58.654 41.667 0.00 0.00 0.00 3.66
2587 2670 5.459107 CCTCCGTTCTAAATTACTCGTCATG 59.541 44.000 0.00 0.00 0.00 3.07
2588 2671 5.451520 CCCTCCGTTCTAAATTACTCGTCAT 60.452 44.000 0.00 0.00 0.00 3.06
2589 2672 4.142315 CCCTCCGTTCTAAATTACTCGTCA 60.142 45.833 0.00 0.00 0.00 4.35
2590 2673 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
2591 2674 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
2592 2675 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
2593 2676 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
2594 2677 6.837568 TCATACTCCCTCCGTTCTAAATTACT 59.162 38.462 0.00 0.00 0.00 2.24
2595 2678 7.047460 TCATACTCCCTCCGTTCTAAATTAC 57.953 40.000 0.00 0.00 0.00 1.89
2596 2679 7.850935 ATCATACTCCCTCCGTTCTAAATTA 57.149 36.000 0.00 0.00 0.00 1.40
2597 2680 6.749036 ATCATACTCCCTCCGTTCTAAATT 57.251 37.500 0.00 0.00 0.00 1.82
2598 2681 6.749036 AATCATACTCCCTCCGTTCTAAAT 57.251 37.500 0.00 0.00 0.00 1.40
2599 2682 6.555463 AAATCATACTCCCTCCGTTCTAAA 57.445 37.500 0.00 0.00 0.00 1.85
2600 2683 6.346096 CAAAATCATACTCCCTCCGTTCTAA 58.654 40.000 0.00 0.00 0.00 2.10
2601 2684 5.684030 GCAAAATCATACTCCCTCCGTTCTA 60.684 44.000 0.00 0.00 0.00 2.10
2602 2685 4.770795 CAAAATCATACTCCCTCCGTTCT 58.229 43.478 0.00 0.00 0.00 3.01
2603 2686 3.312697 GCAAAATCATACTCCCTCCGTTC 59.687 47.826 0.00 0.00 0.00 3.95
2604 2687 3.054361 AGCAAAATCATACTCCCTCCGTT 60.054 43.478 0.00 0.00 0.00 4.44
2605 2688 2.505819 AGCAAAATCATACTCCCTCCGT 59.494 45.455 0.00 0.00 0.00 4.69
2606 2689 3.199880 AGCAAAATCATACTCCCTCCG 57.800 47.619 0.00 0.00 0.00 4.63
2607 2690 7.068716 ACATTTAAGCAAAATCATACTCCCTCC 59.931 37.037 0.00 0.00 35.54 4.30
2608 2691 8.000780 ACATTTAAGCAAAATCATACTCCCTC 57.999 34.615 0.00 0.00 35.54 4.30
2609 2692 7.615365 TGACATTTAAGCAAAATCATACTCCCT 59.385 33.333 0.00 0.00 35.54 4.20
2610 2693 7.771183 TGACATTTAAGCAAAATCATACTCCC 58.229 34.615 0.00 0.00 35.54 4.30
2611 2694 8.462016 ACTGACATTTAAGCAAAATCATACTCC 58.538 33.333 0.00 0.00 35.54 3.85
2612 2695 9.495754 GACTGACATTTAAGCAAAATCATACTC 57.504 33.333 0.00 0.00 35.54 2.59
2613 2696 9.013229 TGACTGACATTTAAGCAAAATCATACT 57.987 29.630 0.00 0.00 35.54 2.12
2614 2697 9.282247 CTGACTGACATTTAAGCAAAATCATAC 57.718 33.333 0.00 0.00 35.54 2.39
2617 2700 6.016024 AGCTGACTGACATTTAAGCAAAATCA 60.016 34.615 0.00 0.00 35.54 2.57
2644 2727 1.371558 GTACCCTCCCGCATGATCC 59.628 63.158 0.00 0.00 0.00 3.36
2662 2777 2.050442 GGCCAGCGGAACAAAACG 60.050 61.111 0.00 0.00 0.00 3.60
2685 2800 1.878953 TCTGTTTCAAGAACTCCGGC 58.121 50.000 0.00 0.00 0.00 6.13
2742 2857 4.414337 TTTTGAGGTTGGGGTTTGATTG 57.586 40.909 0.00 0.00 0.00 2.67
2759 2874 4.381932 GGGGTGCTAGTTTCATGGATTTTG 60.382 45.833 0.00 0.00 0.00 2.44
2766 2881 2.093658 AGTACGGGGTGCTAGTTTCATG 60.094 50.000 0.00 0.00 0.00 3.07
2767 2882 2.167900 GAGTACGGGGTGCTAGTTTCAT 59.832 50.000 0.00 0.00 0.00 2.57
2781 2896 6.697892 GGAATTGTCAGAAATAGAGAGTACGG 59.302 42.308 0.00 0.00 0.00 4.02
2793 2908 0.958382 CCCCGCGGAATTGTCAGAAA 60.958 55.000 30.73 0.00 0.00 2.52
2808 2923 2.482721 GTGAAAGTAATGTGTGACCCCG 59.517 50.000 0.00 0.00 0.00 5.73
2812 2928 6.615839 GCGAGTAAGTGAAAGTAATGTGTGAC 60.616 42.308 0.00 0.00 0.00 3.67
2816 2932 4.201589 CCGCGAGTAAGTGAAAGTAATGTG 60.202 45.833 8.23 0.00 0.00 3.21
2822 2938 0.677842 ACCCGCGAGTAAGTGAAAGT 59.322 50.000 8.23 0.00 0.00 2.66
2825 2941 1.180456 TGGACCCGCGAGTAAGTGAA 61.180 55.000 8.23 0.00 0.00 3.18
2835 2951 0.249868 ATATGACACATGGACCCGCG 60.250 55.000 0.00 0.00 0.00 6.46
2883 2999 5.109903 CCTAAGAGAATTTACAGGTCGGTG 58.890 45.833 0.00 0.00 0.00 4.94
2891 3007 5.684704 CTGGGATGCCTAAGAGAATTTACA 58.315 41.667 4.35 0.00 0.00 2.41
2925 3041 5.410132 TGTCTTTCACGTTTCTCAGTTGAAA 59.590 36.000 0.00 0.00 34.05 2.69
2929 3045 4.209288 CGATGTCTTTCACGTTTCTCAGTT 59.791 41.667 0.00 0.00 0.00 3.16
2930 3046 3.736252 CGATGTCTTTCACGTTTCTCAGT 59.264 43.478 0.00 0.00 0.00 3.41
2934 3050 3.713288 TCACGATGTCTTTCACGTTTCT 58.287 40.909 0.00 0.00 33.92 2.52
2939 3055 2.408704 GGAGTTCACGATGTCTTTCACG 59.591 50.000 0.00 0.00 0.00 4.35
2952 3068 2.996621 CGAAGGATTGTCAGGAGTTCAC 59.003 50.000 0.00 0.00 0.00 3.18
2959 3075 4.274459 GGAATCATTCGAAGGATTGTCAGG 59.726 45.833 34.88 0.00 39.27 3.86
2960 3076 4.877823 TGGAATCATTCGAAGGATTGTCAG 59.122 41.667 34.88 4.35 39.27 3.51
2974 3090 4.708421 AGTTGCATACAAGCTGGAATCATT 59.292 37.500 0.00 0.00 36.16 2.57
2976 3092 3.689347 AGTTGCATACAAGCTGGAATCA 58.311 40.909 0.00 0.00 36.16 2.57
2977 3093 4.397417 AGAAGTTGCATACAAGCTGGAATC 59.603 41.667 0.00 0.00 36.16 2.52
2984 3100 3.604582 AGAGGAGAAGTTGCATACAAGC 58.395 45.455 0.00 0.00 36.16 4.01
3008 3124 5.405935 AGGCCCATACAAAATTCTTGAAC 57.594 39.130 0.00 0.00 0.00 3.18
3026 3142 2.959465 AGCACCCAGATTTATAGGCC 57.041 50.000 0.00 0.00 0.00 5.19
3033 3149 7.286775 TGTTAAAGAAAGTTAGCACCCAGATTT 59.713 33.333 0.00 0.00 0.00 2.17
3072 3189 3.134458 GTGTGTCTCCACTTTGAGGAAG 58.866 50.000 0.00 0.00 42.34 3.46
3079 3196 1.410004 TCTCCGTGTGTCTCCACTTT 58.590 50.000 0.00 0.00 42.34 2.66
3093 3210 0.523966 GGAGACCGAGCATATCTCCG 59.476 60.000 9.68 0.00 46.81 4.63
3123 3240 4.501921 CGATAGTAAACGCAAGGAGGTAAC 59.498 45.833 0.00 0.00 46.39 2.50
3153 3270 8.559536 CAAGATAGCTTAGTCTAGACAGAAGAG 58.440 40.741 28.51 18.02 31.87 2.85
3164 3281 6.184068 TGACAGACTCAAGATAGCTTAGTCT 58.816 40.000 18.81 18.81 41.01 3.24
3169 3286 4.141756 CCCATGACAGACTCAAGATAGCTT 60.142 45.833 0.00 0.00 30.60 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.