Multiple sequence alignment - TraesCS3A01G414000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G414000 chr3A 100.000 6358 0 0 1 6358 657621766 657615409 0.000000e+00 11742
1 TraesCS3A01G414000 chr3A 94.637 317 16 1 4513 4829 697523065 697523380 2.060000e-134 490
2 TraesCS3A01G414000 chr3A 94.357 319 17 1 4505 4822 363315969 363316287 7.410000e-134 488
3 TraesCS3A01G414000 chr3D 93.501 4601 192 56 1 4516 522957291 522952713 0.000000e+00 6741
4 TraesCS3A01G414000 chr3D 88.792 919 57 20 4819 5730 522952717 522951838 0.000000e+00 1085
5 TraesCS3A01G414000 chr3D 89.259 661 36 12 5728 6358 522950917 522950262 0.000000e+00 795
6 TraesCS3A01G414000 chr3B 92.310 3511 167 51 1064 4502 689427699 689424220 0.000000e+00 4892
7 TraesCS3A01G414000 chr3B 91.139 790 55 9 4819 5604 689424218 689423440 0.000000e+00 1057
8 TraesCS3A01G414000 chr3B 92.116 723 41 4 1 708 689428936 689428215 0.000000e+00 1005
9 TraesCS3A01G414000 chr3B 93.957 513 15 7 5852 6358 689420732 689420230 0.000000e+00 761
10 TraesCS3A01G414000 chr3B 88.265 196 13 6 741 936 689428217 689428032 6.410000e-55 226
11 TraesCS3A01G414000 chr3B 82.110 218 14 7 5658 5859 689423435 689423227 5.100000e-36 163
12 TraesCS3A01G414000 chr4D 94.823 367 19 0 1684 2050 12844003 12844369 1.990000e-159 573
13 TraesCS3A01G414000 chr4D 92.643 367 27 0 1684 2050 197324232 197323866 4.370000e-146 529
14 TraesCS3A01G414000 chr7A 93.733 367 23 0 1684 2050 337925088 337925454 9.320000e-153 551
15 TraesCS3A01G414000 chr7A 84.746 118 16 2 1325 1441 694018867 694018751 4.030000e-22 117
16 TraesCS3A01G414000 chr2B 93.443 366 24 0 1684 2049 703575427 703575792 1.560000e-150 544
17 TraesCS3A01G414000 chr6A 96.785 311 9 1 4505 4814 114284838 114285148 9.450000e-143 518
18 TraesCS3A01G414000 chr6A 94.969 318 16 0 4508 4825 297643734 297644051 3.420000e-137 499
19 TraesCS3A01G414000 chr2D 92.098 367 29 0 1684 2050 467630894 467630528 9.450000e-143 518
20 TraesCS3A01G414000 chr4B 91.281 367 30 1 1684 2050 509258073 509258437 3.420000e-137 499
21 TraesCS3A01G414000 chr5A 94.427 323 18 0 4509 4831 1838639 1838961 1.230000e-136 497
22 TraesCS3A01G414000 chr4A 94.953 317 15 1 4513 4829 17247791 17248106 4.430000e-136 496
23 TraesCS3A01G414000 chr4A 95.208 313 14 1 4510 4821 146758262 146758574 1.590000e-135 494
24 TraesCS3A01G414000 chr2A 94.953 317 15 1 4507 4822 582372212 582371896 4.430000e-136 496
25 TraesCS3A01G414000 chr6B 94.393 321 18 0 4510 4830 277270687 277270367 1.590000e-135 494
26 TraesCS3A01G414000 chrUn 90.645 310 29 0 1741 2050 71030299 71029990 4.590000e-111 412
27 TraesCS3A01G414000 chrUn 90.645 310 29 0 1741 2050 408523804 408524113 4.590000e-111 412
28 TraesCS3A01G414000 chrUn 82.275 378 33 21 1391 1741 71035813 71035443 4.820000e-76 296
29 TraesCS3A01G414000 chr5B 84.211 209 31 2 6143 6350 356718742 356718535 1.080000e-47 202
30 TraesCS3A01G414000 chr7D 84.746 118 16 2 1325 1441 602189551 602189435 4.030000e-22 117
31 TraesCS3A01G414000 chr7B 83.051 118 18 2 1325 1441 682241638 682241522 8.720000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G414000 chr3A 657615409 657621766 6357 True 11742.000000 11742 100.000000 1 6358 1 chr3A.!!$R1 6357
1 TraesCS3A01G414000 chr3D 522950262 522957291 7029 True 2873.666667 6741 90.517333 1 6358 3 chr3D.!!$R1 6357
2 TraesCS3A01G414000 chr3B 689420230 689428936 8706 True 1350.666667 4892 89.982833 1 6358 6 chr3B.!!$R1 6357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 874 0.245539 CTTTAGGTCGCCCTGTCGAA 59.754 55.0 0.00 0.0 42.67 3.71 F
1359 1594 1.453762 CCTACCCGTCCACGATCCTC 61.454 65.0 0.00 0.0 43.02 3.71 F
2035 2313 0.107752 TATGTTCTGCTGCCATGCGA 60.108 50.0 0.00 0.0 35.36 5.10 F
3372 3698 0.583438 CAGTGTTTGTGCGACCTCTG 59.417 55.0 0.00 0.0 0.00 3.35 F
3937 4266 0.389426 CTGGAACTGCAAGCAATGGC 60.389 55.0 0.00 0.0 37.60 4.40 F
5107 5442 0.465705 CTGGGTGCACGATCCTGTAT 59.534 55.0 11.45 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2131 0.332632 AGACATGGGTGGGGTGATTG 59.667 55.000 0.00 0.00 0.00 2.67 R
2160 2456 0.758734 TGGACTACACAGCTTGCTGT 59.241 50.000 20.95 20.95 38.21 4.40 R
3477 3803 2.029365 GCGAATAGACTTTTGCGAGGAC 59.971 50.000 0.00 0.00 0.00 3.85 R
5177 5512 0.185901 AAAGCCTTCTGTGGGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91 R
5192 5527 0.328258 TAGGGGTTCTCCAGCAAAGC 59.672 55.000 0.00 0.00 37.22 3.51 R
6328 10127 2.602676 TAGCACACCTTGAGCCCCC 61.603 63.158 0.00 0.00 34.43 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 1.363443 CCTCTGCTCTCATCTCCGC 59.637 63.158 0.00 0.00 0.00 5.54
216 234 0.250467 GCTATGCCGATGGTCCACAT 60.250 55.000 0.00 0.00 44.18 3.21
296 314 3.282021 GTGGTACCAGCAACATCATCAT 58.718 45.455 16.93 0.00 0.00 2.45
398 416 4.908601 TTGGTCTACACTCCATGACATT 57.091 40.909 0.00 0.00 33.50 2.71
455 473 4.452455 GTGTGATACCAACTCTCAAACCTG 59.548 45.833 0.00 0.00 0.00 4.00
520 538 2.115052 TCTTGTTGCCGCCATGGT 59.885 55.556 14.67 0.00 41.21 3.55
545 563 1.078426 CGGCAAACCCCTCTCGAAT 60.078 57.895 0.00 0.00 0.00 3.34
652 670 4.875536 CCAACATGATGAATCTACCGTTCA 59.124 41.667 4.25 0.00 39.65 3.18
658 676 5.879237 TGATGAATCTACCGTTCAAAATGC 58.121 37.500 0.00 0.00 38.89 3.56
669 687 3.482274 CGTTCAAAATGCAATTGCCATCG 60.482 43.478 26.94 15.18 36.10 3.84
715 733 5.447279 CCGTGAACATCAATAAGTAGTTGGC 60.447 44.000 0.00 0.00 0.00 4.52
731 749 0.251297 TGGCAGTGAATGACTTGGGG 60.251 55.000 0.00 0.00 38.04 4.96
786 804 4.694037 CGTTAGGAAGTCCAAACCTTTAGG 59.306 45.833 0.00 0.00 38.89 2.69
843 861 6.598064 AGATTATTGACGTCCAAACCTTTAGG 59.402 38.462 14.12 0.00 38.43 2.69
855 873 1.601419 CCTTTAGGTCGCCCTGTCGA 61.601 60.000 0.00 0.00 42.67 4.20
856 874 0.245539 CTTTAGGTCGCCCTGTCGAA 59.754 55.000 0.00 0.00 42.67 3.71
902 920 3.325870 GCTGCCCAAAATAACACTTTCC 58.674 45.455 0.00 0.00 0.00 3.13
1059 1078 2.165301 GTCGGAAACCCGCATCTCG 61.165 63.158 0.00 0.00 46.35 4.04
1359 1594 1.453762 CCTACCCGTCCACGATCCTC 61.454 65.000 0.00 0.00 43.02 3.71
1389 1624 2.158959 CGCCATCGTCGTCAACCTC 61.159 63.158 0.00 0.00 0.00 3.85
1544 1780 3.927142 CCACTACCTTTCTGTCGATTCAC 59.073 47.826 0.00 0.00 0.00 3.18
1597 1841 4.698304 GGCTAGTAAAGTAACCATTGCACA 59.302 41.667 0.00 0.00 0.00 4.57
1601 1845 8.621286 GCTAGTAAAGTAACCATTGCACAATAT 58.379 33.333 0.00 0.00 0.00 1.28
1731 2000 3.266772 TGGATTAGGACCTGAATGTTGCT 59.733 43.478 3.53 0.00 0.00 3.91
1846 2117 2.985847 GGTGCTGCCCCTGTTGTC 60.986 66.667 0.00 0.00 0.00 3.18
1860 2131 4.389077 CCCTGTTGTCGAGTAGATTTGTTC 59.611 45.833 0.00 0.00 0.00 3.18
1881 2159 1.979809 ATCACCCCACCCATGTCTTA 58.020 50.000 0.00 0.00 0.00 2.10
1897 2175 7.118390 CCCATGTCTTAAGACTTGTCTAAACAG 59.882 40.741 32.83 21.65 44.14 3.16
1900 2178 7.217200 TGTCTTAAGACTTGTCTAAACAGCAT 58.783 34.615 30.47 0.00 44.99 3.79
1902 2180 8.648968 GTCTTAAGACTTGTCTAAACAGCATAC 58.351 37.037 25.30 0.00 41.65 2.39
1903 2181 8.364894 TCTTAAGACTTGTCTAAACAGCATACA 58.635 33.333 0.00 0.00 36.57 2.29
1954 2232 6.339730 TGTTGTCATGTTTTGAGAAATTGCT 58.660 32.000 0.00 0.00 39.13 3.91
1983 2261 4.053295 CTGAACTGGACATTTGCCAAAAG 58.947 43.478 0.00 0.00 34.44 2.27
2006 2284 4.337555 GCAGCATCAGACCTTCATACAATT 59.662 41.667 0.00 0.00 0.00 2.32
2030 2308 5.063204 GGTACAATATATGTTCTGCTGCCA 58.937 41.667 0.00 0.00 43.63 4.92
2035 2313 0.107752 TATGTTCTGCTGCCATGCGA 60.108 50.000 0.00 0.00 35.36 5.10
2036 2314 0.961857 ATGTTCTGCTGCCATGCGAA 60.962 50.000 0.00 0.00 35.36 4.70
2070 2348 7.611467 ACTTTACTGATTGGATGCATGTAAGAA 59.389 33.333 2.46 0.00 0.00 2.52
2085 2363 5.089970 TGTAAGAAGACATGGGTGATCAG 57.910 43.478 0.00 0.00 0.00 2.90
2088 2366 4.686191 AGAAGACATGGGTGATCAGATC 57.314 45.455 3.11 3.11 0.00 2.75
2089 2367 4.035814 AGAAGACATGGGTGATCAGATCA 58.964 43.478 9.21 9.21 36.84 2.92
2090 2368 4.472470 AGAAGACATGGGTGATCAGATCAA 59.528 41.667 15.02 0.00 41.69 2.57
2091 2369 4.849813 AGACATGGGTGATCAGATCAAA 57.150 40.909 15.02 4.57 41.69 2.69
2092 2370 5.384145 AGACATGGGTGATCAGATCAAAT 57.616 39.130 15.02 6.67 41.69 2.32
2093 2371 6.505048 AGACATGGGTGATCAGATCAAATA 57.495 37.500 15.02 4.63 41.69 1.40
2094 2372 6.531923 AGACATGGGTGATCAGATCAAATAG 58.468 40.000 15.02 7.05 41.69 1.73
2196 2493 5.511386 AGTCCACATTCCTTCATCTTTCT 57.489 39.130 0.00 0.00 0.00 2.52
2294 2591 3.118592 ACTCTGTAGGCTATTCCACTTGC 60.119 47.826 0.00 0.00 37.29 4.01
2613 2923 2.111384 TCTGGAAGAGGAGGTATGTGC 58.889 52.381 0.00 0.00 38.67 4.57
2626 2936 6.769822 AGGAGGTATGTGCTTCATCTTATTTG 59.230 38.462 0.00 0.00 37.91 2.32
2764 3074 7.382218 GCCTTTGTTATTACATATGATGTTGGC 59.618 37.037 10.38 5.96 41.63 4.52
2800 3110 7.121168 CACCTCTGCTTATTGGATAAACTTGAA 59.879 37.037 0.00 0.00 0.00 2.69
2845 3155 6.712276 AGAAGTTTGATAATCCCGTCTTTCT 58.288 36.000 0.00 0.00 0.00 2.52
2866 3176 1.880027 CAGAAAACCTGGGAAAGTCCG 59.120 52.381 0.00 0.00 37.43 4.79
2877 3187 5.221561 CCTGGGAAAGTCCGGTTTTTATTTT 60.222 40.000 0.00 0.00 37.43 1.82
2937 3248 1.276421 TCTTAAGCTGGTCTGTCTGGC 59.724 52.381 0.00 0.00 0.00 4.85
2948 3259 2.731976 GTCTGTCTGGCGTAGTCTTTTG 59.268 50.000 0.00 0.00 0.00 2.44
3045 3371 1.470098 CAAGTAGGCAGAACATGGTGC 59.530 52.381 8.11 8.11 39.08 5.01
3056 3382 4.036734 CAGAACATGGTGCACTTGTAGTTT 59.963 41.667 20.95 9.68 36.54 2.66
3218 3544 2.092882 GGACGCGTGCAGAAGGTAC 61.093 63.158 26.60 1.91 0.00 3.34
3358 3684 5.316167 TGGCTACTTTTGAATGATCAGTGT 58.684 37.500 0.00 0.00 36.78 3.55
3372 3698 0.583438 CAGTGTTTGTGCGACCTCTG 59.417 55.000 0.00 0.00 0.00 3.35
3403 3729 4.507756 GTGAAAGAACTTTGCCAAACCATC 59.492 41.667 4.48 0.00 32.11 3.51
3530 3856 3.454082 CTGCACTCCTTTCCCTTCTAGAT 59.546 47.826 0.00 0.00 0.00 1.98
3560 3887 9.822185 GCAGAATAATTCCACCTTGATAAAAAT 57.178 29.630 0.00 0.00 0.00 1.82
3624 3951 2.749621 GGACGATGAAATGGATATGGCC 59.250 50.000 0.00 0.00 0.00 5.36
3802 4129 4.556233 TGGATTCGTATCTGCTATTTCCG 58.444 43.478 1.88 0.00 0.00 4.30
3905 4234 5.808366 TGTGTGTAGGGATGAGGATTATC 57.192 43.478 0.00 0.00 0.00 1.75
3937 4266 0.389426 CTGGAACTGCAAGCAATGGC 60.389 55.000 0.00 0.00 37.60 4.40
3942 4271 2.967397 TGCAAGCAATGGCAGCTC 59.033 55.556 10.40 0.00 42.53 4.09
3994 4323 3.134804 TGGAGATGCTTTTAGAGGCCTAC 59.865 47.826 4.42 0.00 0.00 3.18
4066 4395 6.754193 TCTTCTCTCTCTGTTTTTCTCCTTC 58.246 40.000 0.00 0.00 0.00 3.46
4115 4444 1.419387 GCTGAGATCCTGCCCACTTAT 59.581 52.381 0.00 0.00 34.12 1.73
4128 4457 7.617723 TCCTGCCCACTTATTTATTGTTAACAT 59.382 33.333 9.56 2.67 0.00 2.71
4147 4476 9.774742 GTTAACATGAAGTATTTTCTTAGCAGG 57.225 33.333 0.00 0.00 0.00 4.85
4163 4492 7.155328 TCTTAGCAGGTAAAAGAACTTGAGAG 58.845 38.462 0.00 0.00 0.00 3.20
4227 4557 8.396272 AGAATGTAAAATGCTGTTCTGTTAGT 57.604 30.769 0.00 0.00 0.00 2.24
4251 4584 8.287503 AGTGTATAAGAAAACAAAGTTAAGGCG 58.712 33.333 0.00 0.00 0.00 5.52
4255 4588 6.880822 AAGAAAACAAAGTTAAGGCGAAAC 57.119 33.333 0.00 0.00 0.00 2.78
4340 4675 5.652014 TGACCCCTTTGAACAAGCTAATATG 59.348 40.000 0.00 0.00 0.00 1.78
4486 4821 6.281405 AGACATTAGCGTAGGGAGTTTTATG 58.719 40.000 0.00 0.00 0.00 1.90
4511 4846 9.841295 TGTAGTAGAATTGTAAACCAAACTCTT 57.159 29.630 0.00 0.00 36.44 2.85
4514 4849 9.503399 AGTAGAATTGTAAACCAAACTCTTAGG 57.497 33.333 0.00 0.00 36.44 2.69
4515 4850 7.215719 AGAATTGTAAACCAAACTCTTAGGC 57.784 36.000 0.00 0.00 36.44 3.93
4516 4851 5.977489 ATTGTAAACCAAACTCTTAGGCC 57.023 39.130 0.00 0.00 36.44 5.19
4517 4852 4.717279 TGTAAACCAAACTCTTAGGCCT 57.283 40.909 11.78 11.78 0.00 5.19
4518 4853 4.648651 TGTAAACCAAACTCTTAGGCCTC 58.351 43.478 9.68 0.00 0.00 4.70
4519 4854 4.349930 TGTAAACCAAACTCTTAGGCCTCT 59.650 41.667 9.68 0.00 0.00 3.69
4520 4855 4.455070 AAACCAAACTCTTAGGCCTCTT 57.545 40.909 9.68 0.00 0.00 2.85
4521 4856 4.455070 AACCAAACTCTTAGGCCTCTTT 57.545 40.909 9.68 0.00 0.00 2.52
4522 4857 4.455070 ACCAAACTCTTAGGCCTCTTTT 57.545 40.909 9.68 0.00 0.00 2.27
4523 4858 4.145052 ACCAAACTCTTAGGCCTCTTTTG 58.855 43.478 9.68 12.47 0.00 2.44
4524 4859 3.507622 CCAAACTCTTAGGCCTCTTTTGG 59.492 47.826 9.68 17.46 36.56 3.28
4525 4860 4.145052 CAAACTCTTAGGCCTCTTTTGGT 58.855 43.478 9.68 0.00 0.00 3.67
4526 4861 4.455070 AACTCTTAGGCCTCTTTTGGTT 57.545 40.909 9.68 5.71 0.00 3.67
4527 4862 4.022413 ACTCTTAGGCCTCTTTTGGTTC 57.978 45.455 9.68 0.00 0.00 3.62
4528 4863 3.394606 ACTCTTAGGCCTCTTTTGGTTCA 59.605 43.478 9.68 0.00 0.00 3.18
4529 4864 4.043435 ACTCTTAGGCCTCTTTTGGTTCAT 59.957 41.667 9.68 0.00 0.00 2.57
4530 4865 5.250774 ACTCTTAGGCCTCTTTTGGTTCATA 59.749 40.000 9.68 0.00 0.00 2.15
4531 4866 5.745227 TCTTAGGCCTCTTTTGGTTCATAG 58.255 41.667 9.68 0.00 0.00 2.23
4532 4867 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
4533 4868 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
4534 4869 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
4535 4870 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
4536 4871 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
4537 4872 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
4538 4873 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
4539 4874 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
4540 4875 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
4541 4876 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
4544 4879 9.155975 CTTTTGGTTCATAGGATAGGATTATCG 57.844 37.037 0.00 0.00 37.20 2.92
4545 4880 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
4546 4881 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
4547 4882 8.521170 TGGTTCATAGGATAGGATTATCGTAG 57.479 38.462 1.23 0.00 39.00 3.51
4548 4883 7.560262 TGGTTCATAGGATAGGATTATCGTAGG 59.440 40.741 1.23 3.78 39.00 3.18
4549 4884 7.778853 GGTTCATAGGATAGGATTATCGTAGGA 59.221 40.741 7.24 7.24 41.67 2.94
4550 4885 9.186837 GTTCATAGGATAGGATTATCGTAGGAA 57.813 37.037 14.87 14.87 45.40 3.36
4551 4886 9.937876 TTCATAGGATAGGATTATCGTAGGAAT 57.062 33.333 14.87 0.00 44.20 3.01
4555 4890 8.115490 AGGATAGGATTATCGTAGGAATAGGA 57.885 38.462 1.23 0.00 37.20 2.94
4556 4891 8.566979 AGGATAGGATTATCGTAGGAATAGGAA 58.433 37.037 1.23 0.00 37.20 3.36
4557 4892 9.369672 GGATAGGATTATCGTAGGAATAGGAAT 57.630 37.037 1.23 0.00 37.20 3.01
4561 4896 9.726438 AGGATTATCGTAGGAATAGGAATTTTG 57.274 33.333 0.00 0.00 0.00 2.44
4562 4897 9.503399 GGATTATCGTAGGAATAGGAATTTTGT 57.497 33.333 0.00 0.00 0.00 2.83
4565 4900 9.991906 TTATCGTAGGAATAGGAATTTTGTAGG 57.008 33.333 0.00 0.00 0.00 3.18
4566 4901 7.664552 TCGTAGGAATAGGAATTTTGTAGGA 57.335 36.000 0.00 0.00 0.00 2.94
4567 4902 8.081517 TCGTAGGAATAGGAATTTTGTAGGAA 57.918 34.615 0.00 0.00 0.00 3.36
4568 4903 8.542080 TCGTAGGAATAGGAATTTTGTAGGAAA 58.458 33.333 0.00 0.00 0.00 3.13
4569 4904 9.338622 CGTAGGAATAGGAATTTTGTAGGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
4572 4907 9.413734 AGGAATAGGAATTTTGTAGGAAATGAG 57.586 33.333 0.00 0.00 30.06 2.90
4573 4908 9.408648 GGAATAGGAATTTTGTAGGAAATGAGA 57.591 33.333 0.00 0.00 30.06 3.27
4576 4911 7.651027 AGGAATTTTGTAGGAAATGAGATGG 57.349 36.000 0.00 0.00 30.06 3.51
4577 4912 6.097412 AGGAATTTTGTAGGAAATGAGATGGC 59.903 38.462 0.00 0.00 30.06 4.40
4578 4913 6.127366 GGAATTTTGTAGGAAATGAGATGGCA 60.127 38.462 0.00 0.00 30.06 4.92
4579 4914 7.418254 GGAATTTTGTAGGAAATGAGATGGCAT 60.418 37.037 0.00 0.00 30.06 4.40
4580 4915 5.840243 TTTGTAGGAAATGAGATGGCATG 57.160 39.130 3.81 0.00 0.00 4.06
4581 4916 4.508551 TGTAGGAAATGAGATGGCATGT 57.491 40.909 3.81 0.00 0.00 3.21
4582 4917 5.628797 TGTAGGAAATGAGATGGCATGTA 57.371 39.130 3.81 0.00 0.00 2.29
4583 4918 6.191657 TGTAGGAAATGAGATGGCATGTAT 57.808 37.500 3.81 0.00 0.00 2.29
4584 4919 5.999600 TGTAGGAAATGAGATGGCATGTATG 59.000 40.000 3.81 0.00 0.00 2.39
4585 4920 5.057843 AGGAAATGAGATGGCATGTATGT 57.942 39.130 3.81 0.00 0.00 2.29
4586 4921 5.068636 AGGAAATGAGATGGCATGTATGTC 58.931 41.667 3.81 0.86 0.00 3.06
4588 4923 5.300034 GGAAATGAGATGGCATGTATGTCAA 59.700 40.000 3.81 0.00 46.52 3.18
4589 4924 6.183360 GGAAATGAGATGGCATGTATGTCAAA 60.183 38.462 3.81 0.00 46.52 2.69
4590 4925 6.971726 AATGAGATGGCATGTATGTCAAAT 57.028 33.333 3.81 0.00 46.52 2.32
4591 4926 6.570672 ATGAGATGGCATGTATGTCAAATC 57.429 37.500 3.81 5.50 46.52 2.17
4592 4927 4.823442 TGAGATGGCATGTATGTCAAATCC 59.177 41.667 3.81 0.00 46.52 3.01
4593 4928 5.057843 AGATGGCATGTATGTCAAATCCT 57.942 39.130 3.81 0.00 46.52 3.24
4594 4929 6.183361 TGAGATGGCATGTATGTCAAATCCTA 60.183 38.462 3.81 0.00 46.52 2.94
4595 4930 6.000219 AGATGGCATGTATGTCAAATCCTAC 59.000 40.000 3.81 0.00 46.52 3.18
4596 4931 4.126437 TGGCATGTATGTCAAATCCTACG 58.874 43.478 0.00 0.00 39.82 3.51
4597 4932 4.141824 TGGCATGTATGTCAAATCCTACGA 60.142 41.667 0.00 0.00 39.82 3.43
4598 4933 4.449068 GGCATGTATGTCAAATCCTACGAG 59.551 45.833 0.00 0.00 31.41 4.18
4599 4934 5.050490 GCATGTATGTCAAATCCTACGAGT 58.950 41.667 0.00 0.00 0.00 4.18
4600 4935 6.213677 GCATGTATGTCAAATCCTACGAGTA 58.786 40.000 0.00 0.00 0.00 2.59
4601 4936 6.363626 GCATGTATGTCAAATCCTACGAGTAG 59.636 42.308 3.39 3.39 0.00 2.57
4615 4950 6.563222 CTACGAGTAGGAATAGGAAAGGAG 57.437 45.833 2.46 0.00 0.00 3.69
4616 4951 5.126699 ACGAGTAGGAATAGGAAAGGAGA 57.873 43.478 0.00 0.00 0.00 3.71
4617 4952 5.707495 ACGAGTAGGAATAGGAAAGGAGAT 58.293 41.667 0.00 0.00 0.00 2.75
4618 4953 5.536916 ACGAGTAGGAATAGGAAAGGAGATG 59.463 44.000 0.00 0.00 0.00 2.90
4619 4954 5.536916 CGAGTAGGAATAGGAAAGGAGATGT 59.463 44.000 0.00 0.00 0.00 3.06
4620 4955 6.294286 CGAGTAGGAATAGGAAAGGAGATGTC 60.294 46.154 0.00 0.00 0.00 3.06
4621 4956 6.444704 AGTAGGAATAGGAAAGGAGATGTCA 58.555 40.000 0.00 0.00 0.00 3.58
4622 4957 7.079048 AGTAGGAATAGGAAAGGAGATGTCAT 58.921 38.462 0.00 0.00 0.00 3.06
4623 4958 6.838401 AGGAATAGGAAAGGAGATGTCATT 57.162 37.500 0.00 0.00 0.00 2.57
4624 4959 7.218314 AGGAATAGGAAAGGAGATGTCATTT 57.782 36.000 1.73 1.73 39.36 2.32
4625 4960 8.337118 AGGAATAGGAAAGGAGATGTCATTTA 57.663 34.615 2.17 0.00 36.82 1.40
4626 4961 8.435982 AGGAATAGGAAAGGAGATGTCATTTAG 58.564 37.037 2.17 0.00 36.82 1.85
4627 4962 8.214364 GGAATAGGAAAGGAGATGTCATTTAGT 58.786 37.037 2.17 0.00 36.82 2.24
4628 4963 9.620259 GAATAGGAAAGGAGATGTCATTTAGTT 57.380 33.333 2.17 0.00 36.82 2.24
4629 4964 8.970859 ATAGGAAAGGAGATGTCATTTAGTTG 57.029 34.615 2.17 0.00 36.82 3.16
4630 4965 7.020827 AGGAAAGGAGATGTCATTTAGTTGA 57.979 36.000 2.17 0.00 36.82 3.18
4631 4966 6.881602 AGGAAAGGAGATGTCATTTAGTTGAC 59.118 38.462 2.17 0.00 45.05 3.18
4644 4979 9.696917 GTCATTTAGTTGACATCAAAGGAATTT 57.303 29.630 0.00 0.00 44.38 1.82
4664 4999 8.341892 GAATTTTTCCATTGAGTCTAGGTTCT 57.658 34.615 0.00 0.00 0.00 3.01
4665 5000 8.712228 AATTTTTCCATTGAGTCTAGGTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
4666 5001 8.712228 ATTTTTCCATTGAGTCTAGGTTCTTT 57.288 30.769 0.00 0.00 0.00 2.52
4667 5002 8.533569 TTTTTCCATTGAGTCTAGGTTCTTTT 57.466 30.769 0.00 0.00 0.00 2.27
4668 5003 8.533569 TTTTCCATTGAGTCTAGGTTCTTTTT 57.466 30.769 0.00 0.00 0.00 1.94
4692 5027 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
4693 5028 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
4695 5030 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
4696 5031 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
4697 5032 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
4698 5033 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
4699 5034 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
4700 5035 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
4701 5036 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
4702 5037 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
4703 5038 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
4704 5039 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
4743 5078 7.751768 GAATCTATTCCTATGAACCAAAGGG 57.248 40.000 0.00 0.00 41.29 3.95
4744 5079 5.048846 TCTATTCCTATGAACCAAAGGGC 57.951 43.478 0.00 0.00 37.90 5.19
4745 5080 4.726825 TCTATTCCTATGAACCAAAGGGCT 59.273 41.667 0.00 0.00 37.90 5.19
4746 5081 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
4747 5082 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
4748 5083 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
4749 5084 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
4750 5085 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
4751 5086 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
4752 5087 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
4753 5088 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
4754 5089 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
4755 5090 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
4756 5091 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
4757 5092 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
4801 5136 9.578576 TCCTATGAAATTCCTATGAAATTCCTG 57.421 33.333 6.21 0.00 38.90 3.86
4802 5137 8.302438 CCTATGAAATTCCTATGAAATTCCTGC 58.698 37.037 6.21 0.00 38.90 4.85
4803 5138 7.664552 ATGAAATTCCTATGAAATTCCTGCA 57.335 32.000 6.21 0.00 38.90 4.41
4804 5139 7.479352 TGAAATTCCTATGAAATTCCTGCAA 57.521 32.000 6.21 0.00 38.90 4.08
4805 5140 7.905265 TGAAATTCCTATGAAATTCCTGCAAA 58.095 30.769 6.21 0.00 38.90 3.68
4806 5141 7.818930 TGAAATTCCTATGAAATTCCTGCAAAC 59.181 33.333 6.21 0.00 38.90 2.93
4807 5142 5.659440 TTCCTATGAAATTCCTGCAAACC 57.341 39.130 0.00 0.00 0.00 3.27
4808 5143 4.671831 TCCTATGAAATTCCTGCAAACCA 58.328 39.130 0.00 0.00 0.00 3.67
4809 5144 5.083122 TCCTATGAAATTCCTGCAAACCAA 58.917 37.500 0.00 0.00 0.00 3.67
4810 5145 5.541868 TCCTATGAAATTCCTGCAAACCAAA 59.458 36.000 0.00 0.00 0.00 3.28
4811 5146 5.870978 CCTATGAAATTCCTGCAAACCAAAG 59.129 40.000 0.00 0.00 0.00 2.77
4812 5147 4.070630 TGAAATTCCTGCAAACCAAAGG 57.929 40.909 0.00 0.00 0.00 3.11
4813 5148 3.708631 TGAAATTCCTGCAAACCAAAGGA 59.291 39.130 0.00 0.00 38.35 3.36
4814 5149 4.202243 TGAAATTCCTGCAAACCAAAGGAG 60.202 41.667 0.00 0.00 41.08 3.69
4815 5150 1.703411 TTCCTGCAAACCAAAGGAGG 58.297 50.000 0.00 0.00 43.90 4.30
4816 5151 0.827507 TCCTGCAAACCAAAGGAGGC 60.828 55.000 0.00 0.00 42.45 4.70
4817 5152 1.667722 CTGCAAACCAAAGGAGGCC 59.332 57.895 0.00 0.00 0.00 5.19
5008 5343 1.679139 TCGGGATGAACATTGGCATC 58.321 50.000 11.26 11.26 40.05 3.91
5019 5354 6.003326 TGAACATTGGCATCTCTCTTTACAA 58.997 36.000 0.00 0.00 0.00 2.41
5107 5442 0.465705 CTGGGTGCACGATCCTGTAT 59.534 55.000 11.45 0.00 0.00 2.29
5137 5472 2.273776 GGCTGGGGGAAGAGAAGC 59.726 66.667 0.00 0.00 0.00 3.86
5177 5512 1.895131 GCACCCAATCCTGTCAACAAT 59.105 47.619 0.00 0.00 0.00 2.71
5185 5520 1.144708 TCCTGTCAACAATTGCTCCCA 59.855 47.619 5.05 0.00 0.00 4.37
5192 5527 1.915141 ACAATTGCTCCCACAGAAGG 58.085 50.000 5.05 0.00 0.00 3.46
5196 5531 0.185901 TTGCTCCCACAGAAGGCTTT 59.814 50.000 0.00 0.00 0.00 3.51
5203 5538 0.879765 CACAGAAGGCTTTGCTGGAG 59.120 55.000 17.28 8.06 34.05 3.86
5283 5619 3.869065 TGTAACCTATCCCTTGAAAGCG 58.131 45.455 0.00 0.00 0.00 4.68
5286 5622 2.711542 ACCTATCCCTTGAAAGCGTTG 58.288 47.619 0.00 0.00 0.00 4.10
5290 5626 1.314730 TCCCTTGAAAGCGTTGGAAC 58.685 50.000 0.00 0.00 0.00 3.62
5300 5636 4.716003 GTTGGAACGGAGGGAAGG 57.284 61.111 0.00 0.00 0.00 3.46
5315 5651 5.066913 AGGGAAGGAAGTTTTCTTGATGT 57.933 39.130 0.00 0.00 40.61 3.06
5332 5668 8.335532 TCTTGATGTAAGAAAATGGGTAGTTG 57.664 34.615 0.00 0.00 42.31 3.16
5342 5678 4.576330 AATGGGTAGTTGGAAGAGAAGG 57.424 45.455 0.00 0.00 0.00 3.46
5344 5680 3.593942 TGGGTAGTTGGAAGAGAAGGAA 58.406 45.455 0.00 0.00 0.00 3.36
5359 5695 4.986622 AGAAGGAAATCGTTGCATAAAGC 58.013 39.130 0.00 0.00 45.96 3.51
5412 5748 0.253044 TGCTATTGCACCTGGGAGTC 59.747 55.000 0.00 0.00 45.31 3.36
5502 5841 3.981071 ACCTGCTGCTACAAGTGAATA 57.019 42.857 0.00 0.00 0.00 1.75
5504 5843 4.848357 ACCTGCTGCTACAAGTGAATAAT 58.152 39.130 0.00 0.00 0.00 1.28
5509 5848 7.389884 CCTGCTGCTACAAGTGAATAATATCAT 59.610 37.037 0.00 0.00 0.00 2.45
5550 5891 1.463214 TGTCTTGGCCAGGGGAGAA 60.463 57.895 15.86 0.00 0.00 2.87
5578 5920 3.379372 ACCATGTTGATATTGCTGACAGC 59.621 43.478 20.86 20.86 42.82 4.40
5585 5927 1.996292 TATTGCTGACAGCGTGAGTC 58.004 50.000 22.00 0.00 46.26 3.36
5604 5946 6.795114 GTGAGTCCATATTGTTTGTTTGTACG 59.205 38.462 0.00 0.00 0.00 3.67
5605 5947 6.706716 TGAGTCCATATTGTTTGTTTGTACGA 59.293 34.615 0.00 0.00 0.00 3.43
5606 5948 7.226918 TGAGTCCATATTGTTTGTTTGTACGAA 59.773 33.333 0.00 0.00 0.00 3.85
5607 5949 8.106247 AGTCCATATTGTTTGTTTGTACGAAT 57.894 30.769 0.00 0.00 30.52 3.34
5608 5950 9.221933 AGTCCATATTGTTTGTTTGTACGAATA 57.778 29.630 0.00 0.00 30.52 1.75
5609 5951 9.269415 GTCCATATTGTTTGTTTGTACGAATAC 57.731 33.333 0.00 0.00 30.52 1.89
5632 5974 3.232213 TGTACTCTGATCGCTGGTTTC 57.768 47.619 0.00 0.00 0.00 2.78
5634 5976 0.603569 ACTCTGATCGCTGGTTTCGT 59.396 50.000 0.00 0.00 0.00 3.85
5645 5987 2.477375 GCTGGTTTCGTCATCGTTGTAA 59.523 45.455 0.00 0.00 38.33 2.41
5646 5988 3.124636 GCTGGTTTCGTCATCGTTGTAAT 59.875 43.478 0.00 0.00 38.33 1.89
5647 5989 4.724036 GCTGGTTTCGTCATCGTTGTAATC 60.724 45.833 0.00 0.00 38.33 1.75
5648 5990 3.680937 TGGTTTCGTCATCGTTGTAATCC 59.319 43.478 0.00 0.00 38.33 3.01
5649 5991 3.930848 GGTTTCGTCATCGTTGTAATCCT 59.069 43.478 0.00 0.00 38.33 3.24
5650 5992 4.390909 GGTTTCGTCATCGTTGTAATCCTT 59.609 41.667 0.00 0.00 38.33 3.36
5651 5993 5.313623 GTTTCGTCATCGTTGTAATCCTTG 58.686 41.667 0.00 0.00 38.33 3.61
5652 5994 4.182693 TCGTCATCGTTGTAATCCTTGT 57.817 40.909 0.00 0.00 38.33 3.16
5653 5995 5.313520 TCGTCATCGTTGTAATCCTTGTA 57.686 39.130 0.00 0.00 38.33 2.41
5654 5996 5.712004 TCGTCATCGTTGTAATCCTTGTAA 58.288 37.500 0.00 0.00 38.33 2.41
5655 5997 6.334989 TCGTCATCGTTGTAATCCTTGTAAT 58.665 36.000 0.00 0.00 38.33 1.89
5656 5998 7.482474 TCGTCATCGTTGTAATCCTTGTAATA 58.518 34.615 0.00 0.00 38.33 0.98
5657 5999 7.975058 TCGTCATCGTTGTAATCCTTGTAATAA 59.025 33.333 0.00 0.00 38.33 1.40
5660 6002 9.825109 TCATCGTTGTAATCCTTGTAATAATCA 57.175 29.630 0.00 0.00 0.00 2.57
5723 6980 6.509656 TGCGTCACTACTAATAATAACCTGG 58.490 40.000 0.00 0.00 0.00 4.45
5768 7035 3.969553 AGGGAAAGCAAGGGAAATACTC 58.030 45.455 0.00 0.00 0.00 2.59
5807 7074 4.684242 GTCAAAGCCAAAATAGGGAAAACG 59.316 41.667 0.00 0.00 0.00 3.60
5815 7082 4.376225 AAATAGGGAAAACGAGGGAACA 57.624 40.909 0.00 0.00 0.00 3.18
5818 7085 1.493446 AGGGAAAACGAGGGAACAACT 59.507 47.619 0.00 0.00 0.00 3.16
5820 7087 2.810274 GGGAAAACGAGGGAACAACTAC 59.190 50.000 0.00 0.00 0.00 2.73
5821 7088 2.810274 GGAAAACGAGGGAACAACTACC 59.190 50.000 0.00 0.00 0.00 3.18
5822 7089 2.556144 AAACGAGGGAACAACTACCC 57.444 50.000 0.00 0.00 45.88 3.69
5905 9681 4.403734 GTTACCAAAATCTCTGAACCCCA 58.596 43.478 0.00 0.00 0.00 4.96
5906 9682 3.833559 ACCAAAATCTCTGAACCCCAT 57.166 42.857 0.00 0.00 0.00 4.00
5907 9683 3.701664 ACCAAAATCTCTGAACCCCATC 58.298 45.455 0.00 0.00 0.00 3.51
5925 9701 1.517238 TCGAATCCCCATTCCATCCA 58.483 50.000 0.00 0.00 35.81 3.41
5926 9702 2.065007 TCGAATCCCCATTCCATCCAT 58.935 47.619 0.00 0.00 35.81 3.41
5927 9703 2.040278 TCGAATCCCCATTCCATCCATC 59.960 50.000 0.00 0.00 35.81 3.51
5928 9704 2.812658 GAATCCCCATTCCATCCATCC 58.187 52.381 0.00 0.00 33.38 3.51
5977 9763 2.203509 CGGGGAGGTAGATCGGCT 60.204 66.667 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 1.944709 ACTAGAACCAACAACAACGGC 59.055 47.619 0.00 0.00 0.00 5.68
116 118 2.005960 GCTCGTGAGGCGGATAGTGT 62.006 60.000 0.00 0.00 41.72 3.55
133 135 1.457346 CAGAGAAGGAATTTGCCGCT 58.543 50.000 0.00 0.00 0.00 5.52
141 143 3.481559 TGAGTCCTCCAGAGAAGGAAT 57.518 47.619 0.00 0.00 37.20 3.01
216 234 1.600107 GGTGCCTTCGGTGATGGTA 59.400 57.895 1.36 0.00 30.69 3.25
296 314 4.248058 CAAGCAGTGTGATCATGACAGTA 58.752 43.478 0.00 0.00 0.00 2.74
455 473 4.098807 AGAGCCGAGAGATCCTTTTTCTAC 59.901 45.833 0.00 0.00 0.00 2.59
652 670 3.042871 ACACGATGGCAATTGCATTTT 57.957 38.095 30.32 12.45 44.36 1.82
658 676 3.365520 CACAATCAACACGATGGCAATTG 59.634 43.478 0.00 0.00 33.40 2.32
669 687 3.981211 ACTTTCCATGCACAATCAACAC 58.019 40.909 0.00 0.00 0.00 3.32
700 718 6.371548 GTCATTCACTGCCAACTACTTATTGA 59.628 38.462 0.00 0.00 0.00 2.57
715 733 3.004734 GTGTTTCCCCAAGTCATTCACTG 59.995 47.826 0.00 0.00 34.56 3.66
731 749 3.058639 GTGCACCTCATCTTCTGTGTTTC 60.059 47.826 5.22 0.00 0.00 2.78
809 827 6.697395 TGGACGTCAATAATCTCTCAGAAAA 58.303 36.000 18.91 0.00 0.00 2.29
865 883 0.533755 CAGCGGCAAATCTAGAGGGG 60.534 60.000 1.45 0.00 0.00 4.79
1544 1780 2.097825 AGCCTAGAAGCAAGCAAATGG 58.902 47.619 0.00 0.00 34.23 3.16
1601 1845 7.727578 TGTAATATCCACCTACAGTTCAGAA 57.272 36.000 0.00 0.00 0.00 3.02
1760 2029 1.095228 CCCACACGACACAGCAAAGT 61.095 55.000 0.00 0.00 0.00 2.66
1766 2035 0.603065 TCTGATCCCACACGACACAG 59.397 55.000 0.00 0.00 0.00 3.66
1846 2117 4.332819 GGGGTGATTGAACAAATCTACTCG 59.667 45.833 0.30 0.00 44.42 4.18
1860 2131 0.332632 AGACATGGGTGGGGTGATTG 59.667 55.000 0.00 0.00 0.00 2.67
1881 2159 6.425114 CACTGTATGCTGTTTAGACAAGTCTT 59.575 38.462 8.17 0.00 40.93 3.01
1900 2178 8.630054 AATTAACTTGTATTCTTGGCACTGTA 57.370 30.769 0.00 0.00 0.00 2.74
1902 2180 7.867403 ACAAATTAACTTGTATTCTTGGCACTG 59.133 33.333 0.00 0.00 37.76 3.66
1903 2181 7.951591 ACAAATTAACTTGTATTCTTGGCACT 58.048 30.769 0.00 0.00 37.76 4.40
1954 2232 3.576078 AATGTCCAGTTCAGTTCACCA 57.424 42.857 0.00 0.00 0.00 4.17
1983 2261 2.910199 TGTATGAAGGTCTGATGCTGC 58.090 47.619 0.00 0.00 0.00 5.25
2006 2284 5.063204 GGCAGCAGAACATATATTGTACCA 58.937 41.667 0.00 0.00 37.68 3.25
2028 2306 4.685628 AGTAAAGTGCAAAATTTCGCATGG 59.314 37.500 7.14 0.00 40.89 3.66
2030 2308 5.527951 TCAGTAAAGTGCAAAATTTCGCAT 58.472 33.333 7.14 0.00 40.89 4.73
2035 2313 7.095102 GCATCCAATCAGTAAAGTGCAAAATTT 60.095 33.333 0.00 0.00 0.00 1.82
2036 2314 6.369615 GCATCCAATCAGTAAAGTGCAAAATT 59.630 34.615 0.00 0.00 0.00 1.82
2050 2328 5.587443 TGTCTTCTTACATGCATCCAATCAG 59.413 40.000 0.00 0.00 0.00 2.90
2070 2348 4.849813 TTTGATCTGATCACCCATGTCT 57.150 40.909 19.41 0.00 39.39 3.41
2089 2367 9.529325 GCTTGTACTTTTCAGAAAAACCTATTT 57.471 29.630 9.63 0.00 31.23 1.40
2090 2368 8.914011 AGCTTGTACTTTTCAGAAAAACCTATT 58.086 29.630 9.63 0.00 31.23 1.73
2091 2369 8.465273 AGCTTGTACTTTTCAGAAAAACCTAT 57.535 30.769 9.63 0.00 31.23 2.57
2092 2370 7.875327 AGCTTGTACTTTTCAGAAAAACCTA 57.125 32.000 9.63 0.00 31.23 3.08
2093 2371 6.775594 AGCTTGTACTTTTCAGAAAAACCT 57.224 33.333 9.63 0.00 31.23 3.50
2094 2372 7.648112 CCTTAGCTTGTACTTTTCAGAAAAACC 59.352 37.037 9.63 1.77 31.23 3.27
2160 2456 0.758734 TGGACTACACAGCTTGCTGT 59.241 50.000 20.95 20.95 38.21 4.40
2196 2493 3.947173 GCTCAGCAGCTCCCTCTA 58.053 61.111 0.00 0.00 43.09 2.43
2257 2554 6.459066 CCTACAGAGTCAGAATTCAAGAACA 58.541 40.000 8.44 0.00 0.00 3.18
2737 3047 7.867403 CCAACATCATATGTAATAACAAAGGCC 59.133 37.037 1.90 0.00 44.07 5.19
2764 3074 2.393271 AGCAGAGGTGAAGAAATCGG 57.607 50.000 0.00 0.00 0.00 4.18
2800 3110 2.603075 TAAATTGCTCCAACCAGGCT 57.397 45.000 0.00 0.00 37.29 4.58
2845 3155 2.486548 CGGACTTTCCCAGGTTTTCTGA 60.487 50.000 0.00 0.00 46.18 3.27
2883 3194 7.071069 ACACTAAGCATGATTCCATCTATCA 57.929 36.000 0.00 0.00 36.53 2.15
2889 3200 5.762218 GCTTCTACACTAAGCATGATTCCAT 59.238 40.000 0.00 0.00 46.85 3.41
2937 3248 5.282510 ACAGAGAACAGTCAAAAGACTACG 58.717 41.667 0.00 0.00 33.50 3.51
2976 3287 8.671028 TCTCAAAAGTAGTTTGTAAACTTGACC 58.329 33.333 14.47 2.76 46.52 4.02
3218 3544 6.640499 TGAATCCTCAAACAAGTTAAATTGCG 59.360 34.615 15.16 4.99 33.28 4.85
3314 3640 5.559417 GCCAGCAGAATGAAACAACAAATTG 60.559 40.000 0.00 0.00 39.69 2.32
3358 3684 2.902705 AGTTACAGAGGTCGCACAAA 57.097 45.000 0.00 0.00 0.00 2.83
3372 3698 6.966021 TGGCAAAGTTCTTTCACATAGTTAC 58.034 36.000 0.00 0.00 0.00 2.50
3403 3729 6.882140 TGTATACTTGTATGGTGAAGGTTTGG 59.118 38.462 4.17 0.00 0.00 3.28
3477 3803 2.029365 GCGAATAGACTTTTGCGAGGAC 59.971 50.000 0.00 0.00 0.00 3.85
3530 3856 3.644966 AGGTGGAATTATTCTGCGGAA 57.355 42.857 11.11 11.11 35.78 4.30
3560 3887 9.426534 CATCCCTCACCTATCAGAATGTATATA 57.573 37.037 0.00 0.00 37.40 0.86
3561 3888 8.125081 TCATCCCTCACCTATCAGAATGTATAT 58.875 37.037 0.00 0.00 37.40 0.86
3562 3889 7.478721 TCATCCCTCACCTATCAGAATGTATA 58.521 38.462 0.00 0.00 37.40 1.47
3624 3951 7.305418 GCAAGTTTTTCTGTCAAGTACATTTCG 60.305 37.037 0.00 0.00 37.50 3.46
3717 4044 4.825445 ACATATCCTCCTCCAACTGAGAT 58.175 43.478 0.00 0.00 44.42 2.75
3787 4114 5.449107 TGGTCTACGGAAATAGCAGATAC 57.551 43.478 0.00 0.00 0.00 2.24
3905 4234 3.939837 TTCCAGCTGGCTCGCTTCG 62.940 63.158 28.91 0.67 38.41 3.79
3937 4266 4.973168 TGGGCTTATAACCAATAGAGCTG 58.027 43.478 0.00 0.00 32.89 4.24
3994 4323 3.728718 GTGTACCGTCAATTTGCACAAAG 59.271 43.478 1.92 0.00 33.32 2.77
4066 4395 3.758023 TGGAATGGTGCAAGTAACATGAG 59.242 43.478 0.00 0.00 0.00 2.90
4128 4457 9.787435 TCTTTTACCTGCTAAGAAAATACTTCA 57.213 29.630 0.00 0.00 0.00 3.02
4147 4476 6.205658 ACAATCCTGCTCTCAAGTTCTTTTAC 59.794 38.462 0.00 0.00 0.00 2.01
4206 4536 6.935741 ACACTAACAGAACAGCATTTTACA 57.064 33.333 0.00 0.00 0.00 2.41
4225 4555 8.287503 CGCCTTAACTTTGTTTTCTTATACACT 58.712 33.333 0.00 0.00 0.00 3.55
4226 4556 8.284693 TCGCCTTAACTTTGTTTTCTTATACAC 58.715 33.333 0.00 0.00 0.00 2.90
4227 4557 8.380743 TCGCCTTAACTTTGTTTTCTTATACA 57.619 30.769 0.00 0.00 0.00 2.29
4247 4580 6.263168 AGCATAGCATTTTATAAGTTTCGCCT 59.737 34.615 0.00 0.00 0.00 5.52
4340 4675 9.463443 AAGCAAAACACAAAACACTATATTCTC 57.537 29.630 0.00 0.00 0.00 2.87
4347 4682 6.019779 ACTCAAGCAAAACACAAAACACTA 57.980 33.333 0.00 0.00 0.00 2.74
4502 4837 3.507622 CCAAAAGAGGCCTAAGAGTTTGG 59.492 47.826 21.37 21.37 38.05 3.28
4503 4838 4.145052 ACCAAAAGAGGCCTAAGAGTTTG 58.855 43.478 4.42 11.70 0.00 2.93
4506 4841 3.394606 TGAACCAAAAGAGGCCTAAGAGT 59.605 43.478 4.42 0.00 0.00 3.24
4507 4842 4.021102 TGAACCAAAAGAGGCCTAAGAG 57.979 45.455 4.42 0.00 0.00 2.85
4508 4843 4.657814 ATGAACCAAAAGAGGCCTAAGA 57.342 40.909 4.42 0.00 0.00 2.10
4509 4844 4.884164 CCTATGAACCAAAAGAGGCCTAAG 59.116 45.833 4.42 0.00 0.00 2.18
4510 4845 4.538490 TCCTATGAACCAAAAGAGGCCTAA 59.462 41.667 4.42 0.00 0.00 2.69
4511 4846 4.108570 TCCTATGAACCAAAAGAGGCCTA 58.891 43.478 4.42 0.00 0.00 3.93
4512 4847 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
4513 4848 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
4514 4849 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
4515 4850 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
4518 4853 9.155975 CGATAATCCTATCCTATGAACCAAAAG 57.844 37.037 0.00 0.00 31.68 2.27
4519 4854 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
4520 4855 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
4521 4856 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
4522 4857 7.560262 CCTACGATAATCCTATCCTATGAACCA 59.440 40.741 0.00 0.00 31.68 3.67
4523 4858 7.778853 TCCTACGATAATCCTATCCTATGAACC 59.221 40.741 0.00 0.00 31.68 3.62
4524 4859 8.749026 TCCTACGATAATCCTATCCTATGAAC 57.251 38.462 0.00 0.00 31.68 3.18
4525 4860 9.937876 ATTCCTACGATAATCCTATCCTATGAA 57.062 33.333 0.00 0.00 31.68 2.57
4529 4864 9.234086 TCCTATTCCTACGATAATCCTATCCTA 57.766 37.037 0.00 0.00 31.68 2.94
4530 4865 8.115490 TCCTATTCCTACGATAATCCTATCCT 57.885 38.462 0.00 0.00 31.68 3.24
4531 4866 8.763984 TTCCTATTCCTACGATAATCCTATCC 57.236 38.462 0.00 0.00 31.68 2.59
4535 4870 9.726438 CAAAATTCCTATTCCTACGATAATCCT 57.274 33.333 0.00 0.00 0.00 3.24
4536 4871 9.503399 ACAAAATTCCTATTCCTACGATAATCC 57.497 33.333 0.00 0.00 0.00 3.01
4539 4874 9.991906 CCTACAAAATTCCTATTCCTACGATAA 57.008 33.333 0.00 0.00 0.00 1.75
4540 4875 9.370930 TCCTACAAAATTCCTATTCCTACGATA 57.629 33.333 0.00 0.00 0.00 2.92
4541 4876 8.258850 TCCTACAAAATTCCTATTCCTACGAT 57.741 34.615 0.00 0.00 0.00 3.73
4542 4877 7.664552 TCCTACAAAATTCCTATTCCTACGA 57.335 36.000 0.00 0.00 0.00 3.43
4543 4878 8.726870 TTTCCTACAAAATTCCTATTCCTACG 57.273 34.615 0.00 0.00 0.00 3.51
4546 4881 9.413734 CTCATTTCCTACAAAATTCCTATTCCT 57.586 33.333 0.00 0.00 0.00 3.36
4547 4882 9.408648 TCTCATTTCCTACAAAATTCCTATTCC 57.591 33.333 0.00 0.00 0.00 3.01
4550 4885 9.359653 CCATCTCATTTCCTACAAAATTCCTAT 57.640 33.333 0.00 0.00 0.00 2.57
4551 4886 7.285401 GCCATCTCATTTCCTACAAAATTCCTA 59.715 37.037 0.00 0.00 0.00 2.94
4552 4887 6.097412 GCCATCTCATTTCCTACAAAATTCCT 59.903 38.462 0.00 0.00 0.00 3.36
4553 4888 6.127366 TGCCATCTCATTTCCTACAAAATTCC 60.127 38.462 0.00 0.00 0.00 3.01
4554 4889 6.866480 TGCCATCTCATTTCCTACAAAATTC 58.134 36.000 0.00 0.00 0.00 2.17
4555 4890 6.855763 TGCCATCTCATTTCCTACAAAATT 57.144 33.333 0.00 0.00 0.00 1.82
4556 4891 6.381994 ACATGCCATCTCATTTCCTACAAAAT 59.618 34.615 0.00 0.00 0.00 1.82
4557 4892 5.716228 ACATGCCATCTCATTTCCTACAAAA 59.284 36.000 0.00 0.00 0.00 2.44
4558 4893 5.263599 ACATGCCATCTCATTTCCTACAAA 58.736 37.500 0.00 0.00 0.00 2.83
4559 4894 4.858850 ACATGCCATCTCATTTCCTACAA 58.141 39.130 0.00 0.00 0.00 2.41
4560 4895 4.508551 ACATGCCATCTCATTTCCTACA 57.491 40.909 0.00 0.00 0.00 2.74
4561 4896 6.000219 ACATACATGCCATCTCATTTCCTAC 59.000 40.000 0.00 0.00 0.00 3.18
4562 4897 6.183361 TGACATACATGCCATCTCATTTCCTA 60.183 38.462 0.00 0.00 0.00 2.94
4563 4898 5.057843 ACATACATGCCATCTCATTTCCT 57.942 39.130 0.00 0.00 0.00 3.36
4564 4899 4.823442 TGACATACATGCCATCTCATTTCC 59.177 41.667 0.00 0.00 0.00 3.13
4565 4900 6.381481 TTGACATACATGCCATCTCATTTC 57.619 37.500 0.00 0.00 0.00 2.17
4566 4901 6.778834 TTTGACATACATGCCATCTCATTT 57.221 33.333 0.00 0.00 0.00 2.32
4567 4902 6.015688 GGATTTGACATACATGCCATCTCATT 60.016 38.462 0.00 0.00 0.00 2.57
4568 4903 5.475909 GGATTTGACATACATGCCATCTCAT 59.524 40.000 0.00 0.00 0.00 2.90
4569 4904 4.823442 GGATTTGACATACATGCCATCTCA 59.177 41.667 0.00 0.00 0.00 3.27
4570 4905 5.068636 AGGATTTGACATACATGCCATCTC 58.931 41.667 0.00 0.00 0.00 2.75
4571 4906 5.057843 AGGATTTGACATACATGCCATCT 57.942 39.130 0.00 0.00 0.00 2.90
4572 4907 5.106948 CGTAGGATTTGACATACATGCCATC 60.107 44.000 0.00 0.00 0.00 3.51
4573 4908 4.756642 CGTAGGATTTGACATACATGCCAT 59.243 41.667 0.00 0.00 0.00 4.40
4574 4909 4.126437 CGTAGGATTTGACATACATGCCA 58.874 43.478 0.00 0.00 0.00 4.92
4575 4910 4.377021 TCGTAGGATTTGACATACATGCC 58.623 43.478 0.00 0.00 0.00 4.40
4576 4911 5.050490 ACTCGTAGGATTTGACATACATGC 58.950 41.667 0.00 0.00 0.00 4.06
4577 4912 7.859613 CTACTCGTAGGATTTGACATACATG 57.140 40.000 0.00 0.00 0.00 3.21
4592 4927 6.297582 TCTCCTTTCCTATTCCTACTCGTAG 58.702 44.000 0.00 0.00 0.00 3.51
4593 4928 6.257994 TCTCCTTTCCTATTCCTACTCGTA 57.742 41.667 0.00 0.00 0.00 3.43
4594 4929 5.126699 TCTCCTTTCCTATTCCTACTCGT 57.873 43.478 0.00 0.00 0.00 4.18
4595 4930 5.536916 ACATCTCCTTTCCTATTCCTACTCG 59.463 44.000 0.00 0.00 0.00 4.18
4596 4931 6.551601 TGACATCTCCTTTCCTATTCCTACTC 59.448 42.308 0.00 0.00 0.00 2.59
4597 4932 6.444704 TGACATCTCCTTTCCTATTCCTACT 58.555 40.000 0.00 0.00 0.00 2.57
4598 4933 6.732896 TGACATCTCCTTTCCTATTCCTAC 57.267 41.667 0.00 0.00 0.00 3.18
4599 4934 7.937700 AATGACATCTCCTTTCCTATTCCTA 57.062 36.000 0.00 0.00 0.00 2.94
4600 4935 6.838401 AATGACATCTCCTTTCCTATTCCT 57.162 37.500 0.00 0.00 0.00 3.36
4601 4936 8.214364 ACTAAATGACATCTCCTTTCCTATTCC 58.786 37.037 0.00 0.00 0.00 3.01
4602 4937 9.620259 AACTAAATGACATCTCCTTTCCTATTC 57.380 33.333 0.00 0.00 0.00 1.75
4603 4938 9.401058 CAACTAAATGACATCTCCTTTCCTATT 57.599 33.333 0.00 0.00 0.00 1.73
4604 4939 8.772250 TCAACTAAATGACATCTCCTTTCCTAT 58.228 33.333 0.00 0.00 0.00 2.57
4605 4940 8.146053 TCAACTAAATGACATCTCCTTTCCTA 57.854 34.615 0.00 0.00 0.00 2.94
4606 4941 7.020827 TCAACTAAATGACATCTCCTTTCCT 57.979 36.000 0.00 0.00 0.00 3.36
4622 4957 9.541143 GGAAAAATTCCTTTGATGTCAACTAAA 57.459 29.630 1.86 0.00 46.57 1.85
4639 4974 8.341892 AGAACCTAGACTCAATGGAAAAATTC 57.658 34.615 0.00 0.00 0.00 2.17
4640 4975 8.712228 AAGAACCTAGACTCAATGGAAAAATT 57.288 30.769 0.00 0.00 0.00 1.82
4641 4976 8.712228 AAAGAACCTAGACTCAATGGAAAAAT 57.288 30.769 0.00 0.00 0.00 1.82
4642 4977 8.533569 AAAAGAACCTAGACTCAATGGAAAAA 57.466 30.769 0.00 0.00 0.00 1.94
4643 4978 8.533569 AAAAAGAACCTAGACTCAATGGAAAA 57.466 30.769 0.00 0.00 0.00 2.29
4666 5001 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
4667 5002 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
4670 5005 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
4671 5006 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
4672 5007 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
4673 5008 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
4674 5009 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
4675 5010 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
4676 5011 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
4677 5012 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
4678 5013 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
4679 5014 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
4680 5015 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
4681 5016 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
4682 5017 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
4683 5018 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
4684 5019 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
4685 5020 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
4719 5054 6.207614 GCCCTTTGGTTCATAGGAATAGATTC 59.792 42.308 6.07 0.00 35.14 2.52
4720 5055 6.071320 GCCCTTTGGTTCATAGGAATAGATT 58.929 40.000 6.07 0.00 35.14 2.40
4721 5056 5.373854 AGCCCTTTGGTTCATAGGAATAGAT 59.626 40.000 6.07 0.00 35.14 1.98
4722 5057 4.726825 AGCCCTTTGGTTCATAGGAATAGA 59.273 41.667 6.07 0.00 35.14 1.98
4723 5058 5.053978 AGCCCTTTGGTTCATAGGAATAG 57.946 43.478 6.07 0.00 35.14 1.73
4724 5059 4.726825 AGAGCCCTTTGGTTCATAGGAATA 59.273 41.667 6.07 0.00 43.89 1.75
4725 5060 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
4726 5061 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
4727 5062 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
4728 5063 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
4729 5064 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
4730 5065 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
4731 5066 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
4732 5067 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
4733 5068 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
4734 5069 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
4735 5070 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
4775 5110 9.578576 CAGGAATTTCATAGGAATTTCATAGGA 57.421 33.333 20.16 1.68 41.67 2.94
4776 5111 8.302438 GCAGGAATTTCATAGGAATTTCATAGG 58.698 37.037 20.16 8.71 41.67 2.57
4777 5112 8.853126 TGCAGGAATTTCATAGGAATTTCATAG 58.147 33.333 20.16 12.80 41.67 2.23
4778 5113 8.765488 TGCAGGAATTTCATAGGAATTTCATA 57.235 30.769 20.16 0.00 41.67 2.15
4779 5114 7.664552 TGCAGGAATTTCATAGGAATTTCAT 57.335 32.000 20.16 13.80 41.67 2.57
4780 5115 7.479352 TTGCAGGAATTTCATAGGAATTTCA 57.521 32.000 20.16 4.31 41.67 2.69
4781 5116 7.278646 GGTTTGCAGGAATTTCATAGGAATTTC 59.721 37.037 13.61 13.61 40.29 2.17
4782 5117 7.105588 GGTTTGCAGGAATTTCATAGGAATTT 58.894 34.615 0.00 0.00 31.93 1.82
4783 5118 6.213195 TGGTTTGCAGGAATTTCATAGGAATT 59.787 34.615 0.00 0.00 31.93 2.17
4784 5119 5.721000 TGGTTTGCAGGAATTTCATAGGAAT 59.279 36.000 0.00 0.00 31.93 3.01
4785 5120 5.083122 TGGTTTGCAGGAATTTCATAGGAA 58.917 37.500 0.00 0.00 0.00 3.36
4786 5121 4.671831 TGGTTTGCAGGAATTTCATAGGA 58.328 39.130 0.00 0.00 0.00 2.94
4787 5122 5.404466 TTGGTTTGCAGGAATTTCATAGG 57.596 39.130 0.00 0.00 0.00 2.57
4788 5123 5.870978 CCTTTGGTTTGCAGGAATTTCATAG 59.129 40.000 0.00 0.00 0.00 2.23
4789 5124 5.541868 TCCTTTGGTTTGCAGGAATTTCATA 59.458 36.000 0.00 0.00 33.53 2.15
4790 5125 4.347583 TCCTTTGGTTTGCAGGAATTTCAT 59.652 37.500 0.00 0.00 33.53 2.57
4791 5126 3.708631 TCCTTTGGTTTGCAGGAATTTCA 59.291 39.130 0.00 0.00 33.53 2.69
4792 5127 4.309933 CTCCTTTGGTTTGCAGGAATTTC 58.690 43.478 0.00 0.00 36.23 2.17
4793 5128 3.071457 CCTCCTTTGGTTTGCAGGAATTT 59.929 43.478 0.00 0.00 36.23 1.82
4794 5129 2.634453 CCTCCTTTGGTTTGCAGGAATT 59.366 45.455 0.00 0.00 36.23 2.17
4795 5130 2.250924 CCTCCTTTGGTTTGCAGGAAT 58.749 47.619 0.00 0.00 36.23 3.01
4796 5131 1.703411 CCTCCTTTGGTTTGCAGGAA 58.297 50.000 0.00 0.00 36.23 3.36
4797 5132 0.827507 GCCTCCTTTGGTTTGCAGGA 60.828 55.000 0.00 0.00 35.32 3.86
4798 5133 1.667722 GCCTCCTTTGGTTTGCAGG 59.332 57.895 0.00 0.00 0.00 4.85
4799 5134 0.829182 AGGCCTCCTTTGGTTTGCAG 60.829 55.000 0.00 0.00 0.00 4.41
4800 5135 0.480690 TAGGCCTCCTTTGGTTTGCA 59.519 50.000 9.68 0.00 34.61 4.08
4801 5136 1.546029 CTTAGGCCTCCTTTGGTTTGC 59.454 52.381 9.68 0.00 34.61 3.68
4802 5137 1.546029 GCTTAGGCCTCCTTTGGTTTG 59.454 52.381 9.68 0.00 34.61 2.93
4803 5138 1.429299 AGCTTAGGCCTCCTTTGGTTT 59.571 47.619 9.68 0.00 39.73 3.27
4804 5139 1.076438 AGCTTAGGCCTCCTTTGGTT 58.924 50.000 9.68 0.00 39.73 3.67
4805 5140 1.076438 AAGCTTAGGCCTCCTTTGGT 58.924 50.000 9.68 0.00 39.73 3.67
4806 5141 3.584733 ATAAGCTTAGGCCTCCTTTGG 57.415 47.619 9.68 0.00 39.73 3.28
4807 5142 6.547510 ACAAATATAAGCTTAGGCCTCCTTTG 59.452 38.462 9.68 13.58 39.73 2.77
4808 5143 6.673583 ACAAATATAAGCTTAGGCCTCCTTT 58.326 36.000 9.68 2.40 39.73 3.11
4809 5144 6.267492 ACAAATATAAGCTTAGGCCTCCTT 57.733 37.500 9.68 13.44 39.73 3.36
4810 5145 5.913946 ACAAATATAAGCTTAGGCCTCCT 57.086 39.130 9.68 0.57 39.73 3.69
4811 5146 5.828328 ACAACAAATATAAGCTTAGGCCTCC 59.172 40.000 9.68 0.00 39.73 4.30
4812 5147 6.944234 ACAACAAATATAAGCTTAGGCCTC 57.056 37.500 9.68 0.00 39.73 4.70
4813 5148 7.665974 GGATACAACAAATATAAGCTTAGGCCT 59.334 37.037 11.78 11.78 39.73 5.19
4814 5149 7.665974 AGGATACAACAAATATAAGCTTAGGCC 59.334 37.037 12.54 0.00 38.13 5.19
4815 5150 8.622948 AGGATACAACAAATATAAGCTTAGGC 57.377 34.615 12.54 0.00 41.41 3.93
4817 5152 9.884465 GCAAGGATACAACAAATATAAGCTTAG 57.116 33.333 12.54 0.20 41.41 2.18
5008 5343 3.718815 GCCTACGGGATTGTAAAGAGAG 58.281 50.000 0.00 0.00 33.58 3.20
5019 5354 2.913060 GCTCCTCGCCTACGGGAT 60.913 66.667 0.00 0.00 44.96 3.85
5056 5391 4.098196 CCGAAAGTGGTTTCCCAAAACTTA 59.902 41.667 1.53 0.00 44.15 2.24
5122 5457 2.586792 CCGCTTCTCTTCCCCCAG 59.413 66.667 0.00 0.00 0.00 4.45
5137 5472 1.799258 GCCCTCATTGCAATAGCCCG 61.799 60.000 12.53 0.00 41.13 6.13
5177 5512 0.185901 AAAGCCTTCTGTGGGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91
5185 5520 0.767375 TCTCCAGCAAAGCCTTCTGT 59.233 50.000 0.00 0.00 0.00 3.41
5192 5527 0.328258 TAGGGGTTCTCCAGCAAAGC 59.672 55.000 0.00 0.00 37.22 3.51
5196 5531 2.305927 CTCTTTTAGGGGTTCTCCAGCA 59.694 50.000 0.00 0.00 37.22 4.41
5221 5556 0.790207 ATATAATTCAGGCGCACGCG 59.210 50.000 10.83 3.53 43.06 6.01
5283 5619 0.399075 TTCCTTCCCTCCGTTCCAAC 59.601 55.000 0.00 0.00 0.00 3.77
5286 5622 0.691332 AACTTCCTTCCCTCCGTTCC 59.309 55.000 0.00 0.00 0.00 3.62
5290 5626 2.814336 CAAGAAAACTTCCTTCCCTCCG 59.186 50.000 0.00 0.00 0.00 4.63
5315 5651 7.324388 TCTCTTCCAACTACCCATTTTCTTA 57.676 36.000 0.00 0.00 0.00 2.10
5320 5656 4.601857 TCCTTCTCTTCCAACTACCCATTT 59.398 41.667 0.00 0.00 0.00 2.32
5332 5668 3.074412 TGCAACGATTTCCTTCTCTTCC 58.926 45.455 0.00 0.00 0.00 3.46
5342 5678 2.770865 CGACGCTTTATGCAACGATTTC 59.229 45.455 0.00 0.00 43.06 2.17
5344 5680 1.062002 CCGACGCTTTATGCAACGATT 59.938 47.619 0.00 0.00 43.06 3.34
5359 5695 1.638388 ATGACAGCATTGTGCCGACG 61.638 55.000 0.00 0.00 46.52 5.12
5362 5698 1.515519 GCATGACAGCATTGTGCCG 60.516 57.895 0.00 0.00 46.52 5.69
5434 5770 6.435428 ACTTTTACAAGAGTAATTTGCACCG 58.565 36.000 0.00 0.00 39.78 4.94
5442 5778 8.135529 GGCAAGACAAACTTTTACAAGAGTAAT 58.864 33.333 0.00 0.00 39.78 1.89
5445 5781 5.417580 TGGCAAGACAAACTTTTACAAGAGT 59.582 36.000 0.00 0.00 36.61 3.24
5502 5841 8.781196 CAGTAGCAGCATTTCTACAATGATATT 58.219 33.333 0.00 0.00 38.05 1.28
5504 5843 6.707608 CCAGTAGCAGCATTTCTACAATGATA 59.292 38.462 0.00 0.00 38.05 2.15
5509 5848 3.009723 GCCAGTAGCAGCATTTCTACAA 58.990 45.455 0.00 0.00 42.97 2.41
5550 5891 9.353431 TGTCAGCAATATCAACATGGTAATAAT 57.647 29.630 0.00 0.00 0.00 1.28
5578 5920 5.757886 ACAAACAAACAATATGGACTCACG 58.242 37.500 0.00 0.00 0.00 4.35
5585 5927 9.834628 AAGTATTCGTACAAACAAACAATATGG 57.165 29.630 0.00 0.00 0.00 2.74
5604 5946 5.460419 CCAGCGATCAGAGTACAAAGTATTC 59.540 44.000 0.00 0.00 0.00 1.75
5605 5947 5.105310 ACCAGCGATCAGAGTACAAAGTATT 60.105 40.000 0.00 0.00 0.00 1.89
5606 5948 4.402793 ACCAGCGATCAGAGTACAAAGTAT 59.597 41.667 0.00 0.00 0.00 2.12
5607 5949 3.762288 ACCAGCGATCAGAGTACAAAGTA 59.238 43.478 0.00 0.00 0.00 2.24
5608 5950 2.563179 ACCAGCGATCAGAGTACAAAGT 59.437 45.455 0.00 0.00 0.00 2.66
5609 5951 3.238108 ACCAGCGATCAGAGTACAAAG 57.762 47.619 0.00 0.00 0.00 2.77
5613 5955 2.186076 CGAAACCAGCGATCAGAGTAC 58.814 52.381 0.00 0.00 0.00 2.73
5632 5974 6.583912 ATTACAAGGATTACAACGATGACG 57.416 37.500 0.00 0.00 45.75 4.35
5634 5976 9.825109 TGATTATTACAAGGATTACAACGATGA 57.175 29.630 0.00 0.00 0.00 2.92
5646 5988 9.476202 CAGTCGTTCATATGATTATTACAAGGA 57.524 33.333 6.17 0.00 0.00 3.36
5647 5989 9.261180 ACAGTCGTTCATATGATTATTACAAGG 57.739 33.333 6.17 0.00 0.00 3.61
5675 6017 7.060403 GCAAATCTCTCTCGATTCAAACAAAAG 59.940 37.037 0.00 0.00 32.69 2.27
5680 6022 4.092091 ACGCAAATCTCTCTCGATTCAAAC 59.908 41.667 0.00 0.00 32.69 2.93
5723 6980 6.849588 ATTGTGGCTTGACAAATTTTTCTC 57.150 33.333 5.95 0.00 39.25 2.87
5768 7035 6.156519 GGCTTTGACAAATTTTGGTACTAGG 58.843 40.000 13.42 4.13 34.12 3.02
5807 7074 6.661805 TCATAAATTTGGGTAGTTGTTCCCTC 59.338 38.462 0.00 0.00 43.74 4.30
5815 7082 6.926630 TTGCCTTCATAAATTTGGGTAGTT 57.073 33.333 0.00 0.00 0.00 2.24
5818 7085 8.144862 AGAATTTGCCTTCATAAATTTGGGTA 57.855 30.769 0.00 0.00 36.81 3.69
5820 7087 7.225341 GCTAGAATTTGCCTTCATAAATTTGGG 59.775 37.037 0.00 0.00 36.81 4.12
5821 7088 7.765360 TGCTAGAATTTGCCTTCATAAATTTGG 59.235 33.333 0.00 0.00 36.81 3.28
5822 7089 8.706492 TGCTAGAATTTGCCTTCATAAATTTG 57.294 30.769 0.00 0.00 36.81 2.32
5872 9648 4.752879 TGGTAACGCGGCAGCCTC 62.753 66.667 12.47 0.00 41.18 4.70
5905 9681 2.065007 TGGATGGAATGGGGATTCGAT 58.935 47.619 0.00 0.00 32.81 3.59
5906 9682 1.517238 TGGATGGAATGGGGATTCGA 58.483 50.000 0.00 0.00 0.00 3.71
5907 9683 2.440409 GATGGATGGAATGGGGATTCG 58.560 52.381 0.00 0.00 0.00 3.34
5977 9763 4.449391 GGCTTTAATAGGCGCCGA 57.551 55.556 23.20 18.26 39.90 5.54
5988 9774 4.467084 CCCTCTGCCGCGGCTTTA 62.467 66.667 45.79 30.47 42.51 1.85
6021 9808 4.514577 CATCCTCTCCGGCGCGTT 62.515 66.667 8.43 0.00 0.00 4.84
6328 10127 2.602676 TAGCACACCTTGAGCCCCC 61.603 63.158 0.00 0.00 34.43 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.