Multiple sequence alignment - TraesCS3A01G413900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G413900 chr3A 100.000 4226 0 0 1 4226 657616730 657612505 0.000000e+00 7805.0
1 TraesCS3A01G413900 chr3D 94.636 2778 99 21 692 3425 522950917 522948146 0.000000e+00 4259.0
2 TraesCS3A01G413900 chr3D 86.020 701 52 20 1 694 522952499 522951838 0.000000e+00 710.0
3 TraesCS3A01G413900 chr3D 95.000 60 2 1 3457 3515 528011722 528011663 4.500000e-15 93.5
4 TraesCS3A01G413900 chr3B 95.083 2603 84 20 816 3386 689420732 689418142 0.000000e+00 4058.0
5 TraesCS3A01G413900 chr3B 89.161 572 47 9 1 568 689424000 689423440 0.000000e+00 699.0
6 TraesCS3A01G413900 chr3B 82.110 218 14 7 622 823 689423435 689423227 3.380000e-36 163.0
7 TraesCS3A01G413900 chr3B 93.182 44 2 1 3476 3518 57418550 57418507 3.530000e-06 63.9
8 TraesCS3A01G413900 chr5D 85.941 2013 270 13 1095 3100 310696728 310694722 0.000000e+00 2137.0
9 TraesCS3A01G413900 chr5D 90.247 728 51 11 3516 4226 483026709 483025985 0.000000e+00 933.0
10 TraesCS3A01G413900 chr5D 96.443 506 18 0 3721 4226 41243311 41242806 0.000000e+00 835.0
11 TraesCS3A01G413900 chr5D 87.395 714 63 13 3529 4226 381728216 381728918 0.000000e+00 795.0
12 TraesCS3A01G413900 chr5D 83.654 104 6 5 3426 3518 332410469 332410572 2.090000e-13 87.9
13 TraesCS3A01G413900 chr5B 85.993 1999 261 16 1107 3100 356718742 356716758 0.000000e+00 2122.0
14 TraesCS3A01G413900 chr5B 86.420 81 9 2 2957 3037 297061281 297061359 2.090000e-13 87.9
15 TraesCS3A01G413900 chr5A 85.395 2013 272 19 1095 3100 404230369 404228372 0.000000e+00 2069.0
16 TraesCS3A01G413900 chr5A 87.879 66 6 2 3454 3518 451389337 451389273 4.530000e-10 76.8
17 TraesCS3A01G413900 chr6D 93.260 727 36 10 3511 4226 457011977 457012701 0.000000e+00 1059.0
18 TraesCS3A01G413900 chr7D 92.329 717 27 5 3511 4226 603191384 603192073 0.000000e+00 994.0
19 TraesCS3A01G413900 chr1D 92.135 712 29 7 3516 4226 422284374 422283689 0.000000e+00 979.0
20 TraesCS3A01G413900 chr1D 91.298 724 45 7 3516 4226 250191443 250190725 0.000000e+00 972.0
21 TraesCS3A01G413900 chr2B 90.476 714 44 11 3516 4226 767310875 767311567 0.000000e+00 920.0
22 TraesCS3A01G413900 chr2B 85.656 732 70 14 3512 4226 693294636 693293923 0.000000e+00 737.0
23 TraesCS3A01G413900 chr7B 79.163 1291 213 38 1852 3096 3087848 3086568 0.000000e+00 843.0
24 TraesCS3A01G413900 chr7B 78.800 750 122 28 1128 1854 3093542 3092807 1.780000e-128 470.0
25 TraesCS3A01G413900 chrUn 92.670 573 37 2 3654 4226 105624871 105624304 0.000000e+00 821.0
26 TraesCS3A01G413900 chr2A 85.322 729 79 14 3517 4226 371583735 371584454 0.000000e+00 728.0
27 TraesCS3A01G413900 chr4A 87.674 576 44 8 3512 4084 655663649 655663098 0.000000e+00 645.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G413900 chr3A 657612505 657616730 4225 True 7805.0 7805 100.000000 1 4226 1 chr3A.!!$R1 4225
1 TraesCS3A01G413900 chr3D 522948146 522952499 4353 True 2484.5 4259 90.328000 1 3425 2 chr3D.!!$R2 3424
2 TraesCS3A01G413900 chr3B 689418142 689424000 5858 True 1640.0 4058 88.784667 1 3386 3 chr3B.!!$R2 3385
3 TraesCS3A01G413900 chr5D 310694722 310696728 2006 True 2137.0 2137 85.941000 1095 3100 1 chr5D.!!$R2 2005
4 TraesCS3A01G413900 chr5D 483025985 483026709 724 True 933.0 933 90.247000 3516 4226 1 chr5D.!!$R3 710
5 TraesCS3A01G413900 chr5D 41242806 41243311 505 True 835.0 835 96.443000 3721 4226 1 chr5D.!!$R1 505
6 TraesCS3A01G413900 chr5D 381728216 381728918 702 False 795.0 795 87.395000 3529 4226 1 chr5D.!!$F2 697
7 TraesCS3A01G413900 chr5B 356716758 356718742 1984 True 2122.0 2122 85.993000 1107 3100 1 chr5B.!!$R1 1993
8 TraesCS3A01G413900 chr5A 404228372 404230369 1997 True 2069.0 2069 85.395000 1095 3100 1 chr5A.!!$R1 2005
9 TraesCS3A01G413900 chr6D 457011977 457012701 724 False 1059.0 1059 93.260000 3511 4226 1 chr6D.!!$F1 715
10 TraesCS3A01G413900 chr7D 603191384 603192073 689 False 994.0 994 92.329000 3511 4226 1 chr7D.!!$F1 715
11 TraesCS3A01G413900 chr1D 422283689 422284374 685 True 979.0 979 92.135000 3516 4226 1 chr1D.!!$R2 710
12 TraesCS3A01G413900 chr1D 250190725 250191443 718 True 972.0 972 91.298000 3516 4226 1 chr1D.!!$R1 710
13 TraesCS3A01G413900 chr2B 767310875 767311567 692 False 920.0 920 90.476000 3516 4226 1 chr2B.!!$F1 710
14 TraesCS3A01G413900 chr2B 693293923 693294636 713 True 737.0 737 85.656000 3512 4226 1 chr2B.!!$R1 714
15 TraesCS3A01G413900 chr7B 3086568 3087848 1280 True 843.0 843 79.163000 1852 3096 1 chr7B.!!$R1 1244
16 TraesCS3A01G413900 chr7B 3092807 3093542 735 True 470.0 470 78.800000 1128 1854 1 chr7B.!!$R2 726
17 TraesCS3A01G413900 chrUn 105624304 105624871 567 True 821.0 821 92.670000 3654 4226 1 chrUn.!!$R1 572
18 TraesCS3A01G413900 chr2A 371583735 371584454 719 False 728.0 728 85.322000 3517 4226 1 chr2A.!!$F1 709
19 TraesCS3A01G413900 chr4A 655663098 655663649 551 True 645.0 645 87.674000 3512 4084 1 chr4A.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.185901 TTGCTCCCACAGAAGGCTTT 59.814 50.000 0.00 0.00 0.00 3.51 F
376 378 0.253044 TGCTATTGCACCTGGGAGTC 59.747 55.000 0.00 0.00 45.31 3.36 F
598 606 0.603569 ACTCTGATCGCTGGTTTCGT 59.396 50.000 0.00 0.00 0.00 3.85 F
782 1715 1.493446 AGGGAAAACGAGGGAACAACT 59.507 47.619 0.00 0.00 0.00 3.16 F
889 4331 1.517238 TCGAATCCCCATTCCATCCA 58.483 50.000 0.00 0.00 35.81 3.41 F
2724 6250 1.377202 GACATGGTGGCACATCCGT 60.377 57.895 20.82 10.32 39.87 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 4757 2.602676 TAGCACACCTTGAGCCCCC 61.603 63.158 0.00 0.00 34.43 5.40 R
2347 5854 2.352127 GGTAGTGGTGGTCGTTGTAGAC 60.352 54.545 0.00 0.00 40.25 2.59 R
2505 6012 1.205893 AGATCAAACGTCCTCAGCCTC 59.794 52.381 0.00 0.00 0.00 4.70 R
2724 6250 2.515290 TAGATCGCGTCGCCCTCA 60.515 61.111 12.44 0.00 0.00 3.86 R
2796 6322 3.710722 CAGAGGCCGCTGTCCCTT 61.711 66.667 26.79 0.00 0.00 3.95 R
4142 7764 0.940126 ATTGTCATCGCGGATGCTTC 59.060 50.000 6.13 4.27 39.63 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 0.465705 CTGGGTGCACGATCCTGTAT 59.534 55.000 11.45 0.00 0.00 2.29
101 102 2.273776 GGCTGGGGGAAGAGAAGC 59.726 66.667 0.00 0.00 0.00 3.86
141 142 1.895131 GCACCCAATCCTGTCAACAAT 59.105 47.619 0.00 0.00 0.00 2.71
149 150 1.144708 TCCTGTCAACAATTGCTCCCA 59.855 47.619 5.05 0.00 0.00 4.37
156 157 1.915141 ACAATTGCTCCCACAGAAGG 58.085 50.000 5.05 0.00 0.00 3.46
160 161 0.185901 TTGCTCCCACAGAAGGCTTT 59.814 50.000 0.00 0.00 0.00 3.51
167 168 0.879765 CACAGAAGGCTTTGCTGGAG 59.120 55.000 17.28 8.06 34.05 3.86
247 249 3.869065 TGTAACCTATCCCTTGAAAGCG 58.131 45.455 0.00 0.00 0.00 4.68
250 252 2.711542 ACCTATCCCTTGAAAGCGTTG 58.288 47.619 0.00 0.00 0.00 4.10
254 256 1.314730 TCCCTTGAAAGCGTTGGAAC 58.685 50.000 0.00 0.00 0.00 3.62
264 266 4.716003 GTTGGAACGGAGGGAAGG 57.284 61.111 0.00 0.00 0.00 3.46
279 281 5.066913 AGGGAAGGAAGTTTTCTTGATGT 57.933 39.130 0.00 0.00 40.61 3.06
296 298 8.335532 TCTTGATGTAAGAAAATGGGTAGTTG 57.664 34.615 0.00 0.00 42.31 3.16
306 308 4.576330 AATGGGTAGTTGGAAGAGAAGG 57.424 45.455 0.00 0.00 0.00 3.46
308 310 3.593942 TGGGTAGTTGGAAGAGAAGGAA 58.406 45.455 0.00 0.00 0.00 3.36
323 325 4.986622 AGAAGGAAATCGTTGCATAAAGC 58.013 39.130 0.00 0.00 45.96 3.51
376 378 0.253044 TGCTATTGCACCTGGGAGTC 59.747 55.000 0.00 0.00 45.31 3.36
466 471 3.981071 ACCTGCTGCTACAAGTGAATA 57.019 42.857 0.00 0.00 0.00 1.75
468 473 4.848357 ACCTGCTGCTACAAGTGAATAAT 58.152 39.130 0.00 0.00 0.00 1.28
473 478 7.389884 CCTGCTGCTACAAGTGAATAATATCAT 59.610 37.037 0.00 0.00 0.00 2.45
514 521 1.463214 TGTCTTGGCCAGGGGAGAA 60.463 57.895 15.86 0.00 0.00 2.87
542 550 3.379372 ACCATGTTGATATTGCTGACAGC 59.621 43.478 20.86 20.86 42.82 4.40
549 557 1.996292 TATTGCTGACAGCGTGAGTC 58.004 50.000 22.00 0.00 46.26 3.36
568 576 6.795114 GTGAGTCCATATTGTTTGTTTGTACG 59.205 38.462 0.00 0.00 0.00 3.67
569 577 6.706716 TGAGTCCATATTGTTTGTTTGTACGA 59.293 34.615 0.00 0.00 0.00 3.43
570 578 7.226918 TGAGTCCATATTGTTTGTTTGTACGAA 59.773 33.333 0.00 0.00 0.00 3.85
571 579 8.106247 AGTCCATATTGTTTGTTTGTACGAAT 57.894 30.769 0.00 0.00 30.52 3.34
572 580 9.221933 AGTCCATATTGTTTGTTTGTACGAATA 57.778 29.630 0.00 0.00 30.52 1.75
573 581 9.269415 GTCCATATTGTTTGTTTGTACGAATAC 57.731 33.333 0.00 0.00 30.52 1.89
596 604 3.232213 TGTACTCTGATCGCTGGTTTC 57.768 47.619 0.00 0.00 0.00 2.78
598 606 0.603569 ACTCTGATCGCTGGTTTCGT 59.396 50.000 0.00 0.00 0.00 3.85
609 617 2.477375 GCTGGTTTCGTCATCGTTGTAA 59.523 45.455 0.00 0.00 38.33 2.41
610 618 3.124636 GCTGGTTTCGTCATCGTTGTAAT 59.875 43.478 0.00 0.00 38.33 1.89
611 619 4.724036 GCTGGTTTCGTCATCGTTGTAATC 60.724 45.833 0.00 0.00 38.33 1.75
612 620 3.680937 TGGTTTCGTCATCGTTGTAATCC 59.319 43.478 0.00 0.00 38.33 3.01
613 621 3.930848 GGTTTCGTCATCGTTGTAATCCT 59.069 43.478 0.00 0.00 38.33 3.24
614 622 4.390909 GGTTTCGTCATCGTTGTAATCCTT 59.609 41.667 0.00 0.00 38.33 3.36
615 623 5.313623 GTTTCGTCATCGTTGTAATCCTTG 58.686 41.667 0.00 0.00 38.33 3.61
616 624 4.182693 TCGTCATCGTTGTAATCCTTGT 57.817 40.909 0.00 0.00 38.33 3.16
617 625 5.313520 TCGTCATCGTTGTAATCCTTGTA 57.686 39.130 0.00 0.00 38.33 2.41
618 626 5.712004 TCGTCATCGTTGTAATCCTTGTAA 58.288 37.500 0.00 0.00 38.33 2.41
619 627 6.334989 TCGTCATCGTTGTAATCCTTGTAAT 58.665 36.000 0.00 0.00 38.33 1.89
620 628 7.482474 TCGTCATCGTTGTAATCCTTGTAATA 58.518 34.615 0.00 0.00 38.33 0.98
621 629 7.975058 TCGTCATCGTTGTAATCCTTGTAATAA 59.025 33.333 0.00 0.00 38.33 1.40
624 632 9.825109 TCATCGTTGTAATCCTTGTAATAATCA 57.175 29.630 0.00 0.00 0.00 2.57
687 1610 6.509656 TGCGTCACTACTAATAATAACCTGG 58.490 40.000 0.00 0.00 0.00 4.45
732 1665 3.969553 AGGGAAAGCAAGGGAAATACTC 58.030 45.455 0.00 0.00 0.00 2.59
771 1704 4.684242 GTCAAAGCCAAAATAGGGAAAACG 59.316 41.667 0.00 0.00 0.00 3.60
779 1712 4.376225 AAATAGGGAAAACGAGGGAACA 57.624 40.909 0.00 0.00 0.00 3.18
782 1715 1.493446 AGGGAAAACGAGGGAACAACT 59.507 47.619 0.00 0.00 0.00 3.16
784 1717 2.810274 GGGAAAACGAGGGAACAACTAC 59.190 50.000 0.00 0.00 0.00 2.73
785 1718 2.810274 GGAAAACGAGGGAACAACTACC 59.190 50.000 0.00 0.00 0.00 3.18
786 1719 2.556144 AAACGAGGGAACAACTACCC 57.444 50.000 0.00 0.00 45.88 3.69
869 4311 4.403734 GTTACCAAAATCTCTGAACCCCA 58.596 43.478 0.00 0.00 0.00 4.96
870 4312 3.833559 ACCAAAATCTCTGAACCCCAT 57.166 42.857 0.00 0.00 0.00 4.00
871 4313 3.701664 ACCAAAATCTCTGAACCCCATC 58.298 45.455 0.00 0.00 0.00 3.51
889 4331 1.517238 TCGAATCCCCATTCCATCCA 58.483 50.000 0.00 0.00 35.81 3.41
890 4332 2.065007 TCGAATCCCCATTCCATCCAT 58.935 47.619 0.00 0.00 35.81 3.41
891 4333 2.040278 TCGAATCCCCATTCCATCCATC 59.960 50.000 0.00 0.00 35.81 3.51
892 4334 2.812658 GAATCCCCATTCCATCCATCC 58.187 52.381 0.00 0.00 33.38 3.51
941 4393 2.203509 CGGGGAGGTAGATCGGCT 60.204 66.667 0.00 0.00 0.00 5.52
2088 5592 2.456119 GCGCAAGGACGTGGATGAG 61.456 63.158 0.30 0.00 38.28 2.90
2724 6250 1.377202 GACATGGTGGCACATCCGT 60.377 57.895 20.82 10.32 39.87 4.69
2796 6322 2.473760 CGTCGTGTGGGCCAACAAA 61.474 57.895 16.61 3.07 0.00 2.83
3003 6535 1.766461 CGCCTTGGAGGGGGTCTAT 60.766 63.158 3.30 0.00 43.90 1.98
3125 6657 3.425713 CGCCGACATTGCTGCTGT 61.426 61.111 0.00 0.00 0.00 4.40
3131 6666 0.038892 GACATTGCTGCTGTTGGTGG 60.039 55.000 0.00 0.00 0.00 4.61
3251 6791 6.877236 AGTTTTTGGTTTGTTGAGATGATGT 58.123 32.000 0.00 0.00 0.00 3.06
3312 6874 4.808364 TGACATTTTGTAGTGCTTTTTGCC 59.192 37.500 0.00 0.00 42.00 4.52
3332 6894 4.202121 TGCCTGAGTAGATCGTCAAATACC 60.202 45.833 0.00 0.00 0.00 2.73
3335 6897 5.299531 CCTGAGTAGATCGTCAAATACCTGA 59.700 44.000 0.00 0.00 0.00 3.86
3344 6906 5.730550 TCGTCAAATACCTGATGCTAGTTT 58.269 37.500 0.00 0.00 33.16 2.66
3388 6950 6.677781 TGAAGTTGAAATGAACTCTTCGTT 57.322 33.333 0.00 0.00 40.47 3.85
3389 6951 7.780008 TGAAGTTGAAATGAACTCTTCGTTA 57.220 32.000 0.00 0.00 37.90 3.18
3390 6952 7.627340 TGAAGTTGAAATGAACTCTTCGTTAC 58.373 34.615 0.00 0.00 37.90 2.50
3396 6958 4.713824 ATGAACTCTTCGTTACGGATCA 57.286 40.909 4.53 0.00 35.56 2.92
3416 6978 5.900339 TCAGTAAACTCGTTGCTTTGTAG 57.100 39.130 0.00 0.00 28.24 2.74
3425 6987 4.304110 TCGTTGCTTTGTAGTACTCCAAG 58.696 43.478 0.00 1.37 0.00 3.61
3426 6988 4.038282 TCGTTGCTTTGTAGTACTCCAAGA 59.962 41.667 0.00 0.00 0.00 3.02
3427 6989 4.386049 CGTTGCTTTGTAGTACTCCAAGAG 59.614 45.833 0.00 2.66 35.52 2.85
3428 6990 4.537135 TGCTTTGTAGTACTCCAAGAGG 57.463 45.455 0.00 0.00 33.35 3.69
3429 6991 3.901844 TGCTTTGTAGTACTCCAAGAGGT 59.098 43.478 0.00 0.00 33.35 3.85
3430 6992 4.246458 GCTTTGTAGTACTCCAAGAGGTG 58.754 47.826 0.00 0.00 33.35 4.00
3431 6993 3.955650 TTGTAGTACTCCAAGAGGTGC 57.044 47.619 0.00 0.00 33.35 5.01
3432 6994 1.816835 TGTAGTACTCCAAGAGGTGCG 59.183 52.381 0.00 0.00 33.35 5.34
3433 6995 0.815734 TAGTACTCCAAGAGGTGCGC 59.184 55.000 0.00 0.00 33.35 6.09
3434 6996 0.900647 AGTACTCCAAGAGGTGCGCT 60.901 55.000 9.73 0.00 33.35 5.92
3435 6997 0.037232 GTACTCCAAGAGGTGCGCTT 60.037 55.000 9.73 0.00 33.35 4.68
3436 6998 0.246635 TACTCCAAGAGGTGCGCTTC 59.753 55.000 9.73 0.24 33.35 3.86
3437 6999 2.048222 TCCAAGAGGTGCGCTTCG 60.048 61.111 9.73 0.00 35.89 3.79
3438 7000 3.121030 CCAAGAGGTGCGCTTCGG 61.121 66.667 9.73 0.72 0.00 4.30
3439 7001 2.357517 CAAGAGGTGCGCTTCGGT 60.358 61.111 9.73 0.00 0.00 4.69
3440 7002 1.080093 CAAGAGGTGCGCTTCGGTA 60.080 57.895 9.73 0.00 0.00 4.02
3441 7003 1.080025 AAGAGGTGCGCTTCGGTAC 60.080 57.895 9.73 0.00 0.00 3.34
3442 7004 1.812686 AAGAGGTGCGCTTCGGTACA 61.813 55.000 9.73 0.00 0.00 2.90
3443 7005 1.373748 GAGGTGCGCTTCGGTACAA 60.374 57.895 9.73 0.00 0.00 2.41
3444 7006 1.623973 GAGGTGCGCTTCGGTACAAC 61.624 60.000 9.73 0.00 0.00 3.32
3445 7007 1.957186 GGTGCGCTTCGGTACAACA 60.957 57.895 9.73 0.00 0.00 3.33
3446 7008 1.203313 GTGCGCTTCGGTACAACAC 59.797 57.895 9.73 0.00 0.00 3.32
3447 7009 1.227292 TGCGCTTCGGTACAACACA 60.227 52.632 9.73 0.00 0.00 3.72
3448 7010 1.203313 GCGCTTCGGTACAACACAC 59.797 57.895 0.00 0.00 0.00 3.82
3449 7011 1.492319 GCGCTTCGGTACAACACACA 61.492 55.000 0.00 0.00 0.00 3.72
3450 7012 0.231279 CGCTTCGGTACAACACACAC 59.769 55.000 0.00 0.00 0.00 3.82
3451 7013 1.292061 GCTTCGGTACAACACACACA 58.708 50.000 0.00 0.00 0.00 3.72
3452 7014 1.004292 GCTTCGGTACAACACACACAC 60.004 52.381 0.00 0.00 0.00 3.82
3453 7015 2.272678 CTTCGGTACAACACACACACA 58.727 47.619 0.00 0.00 0.00 3.72
3454 7016 1.642728 TCGGTACAACACACACACAC 58.357 50.000 0.00 0.00 0.00 3.82
3455 7017 1.067071 TCGGTACAACACACACACACA 60.067 47.619 0.00 0.00 0.00 3.72
3456 7018 1.061421 CGGTACAACACACACACACAC 59.939 52.381 0.00 0.00 0.00 3.82
3457 7019 2.077627 GGTACAACACACACACACACA 58.922 47.619 0.00 0.00 0.00 3.72
3458 7020 2.159626 GGTACAACACACACACACACAC 60.160 50.000 0.00 0.00 0.00 3.82
3459 7021 0.878416 ACAACACACACACACACACC 59.122 50.000 0.00 0.00 0.00 4.16
3460 7022 0.170116 CAACACACACACACACACCC 59.830 55.000 0.00 0.00 0.00 4.61
3461 7023 0.963355 AACACACACACACACACCCC 60.963 55.000 0.00 0.00 0.00 4.95
3462 7024 2.118404 CACACACACACACACCCCC 61.118 63.158 0.00 0.00 0.00 5.40
3479 7041 3.480505 CCCCCAACGTATAAAGGGTAG 57.519 52.381 0.00 0.00 39.76 3.18
3480 7042 2.105306 CCCCCAACGTATAAAGGGTAGG 59.895 54.545 0.00 0.00 39.76 3.18
3481 7043 2.486013 CCCCAACGTATAAAGGGTAGGC 60.486 54.545 0.00 0.00 39.76 3.93
3482 7044 2.476821 CCAACGTATAAAGGGTAGGCG 58.523 52.381 0.00 0.00 0.00 5.52
3483 7045 2.476821 CAACGTATAAAGGGTAGGCGG 58.523 52.381 0.00 0.00 0.00 6.13
3484 7046 1.780503 ACGTATAAAGGGTAGGCGGT 58.219 50.000 0.00 0.00 0.00 5.68
3485 7047 1.683385 ACGTATAAAGGGTAGGCGGTC 59.317 52.381 0.00 0.00 0.00 4.79
3486 7048 1.682854 CGTATAAAGGGTAGGCGGTCA 59.317 52.381 0.00 0.00 0.00 4.02
3487 7049 2.298163 CGTATAAAGGGTAGGCGGTCAT 59.702 50.000 0.00 0.00 0.00 3.06
3488 7050 3.243975 CGTATAAAGGGTAGGCGGTCATT 60.244 47.826 0.00 0.00 0.00 2.57
3489 7051 3.945640 ATAAAGGGTAGGCGGTCATTT 57.054 42.857 0.00 0.00 0.00 2.32
3490 7052 2.124277 AAAGGGTAGGCGGTCATTTC 57.876 50.000 0.00 0.00 0.00 2.17
3491 7053 0.988832 AAGGGTAGGCGGTCATTTCA 59.011 50.000 0.00 0.00 0.00 2.69
3492 7054 0.252197 AGGGTAGGCGGTCATTTCAC 59.748 55.000 0.00 0.00 0.00 3.18
3493 7055 0.035820 GGGTAGGCGGTCATTTCACA 60.036 55.000 0.00 0.00 0.00 3.58
3494 7056 1.084289 GGTAGGCGGTCATTTCACAC 58.916 55.000 0.00 0.00 0.00 3.82
3495 7057 0.719465 GTAGGCGGTCATTTCACACG 59.281 55.000 0.00 0.00 0.00 4.49
3497 7059 2.175811 GCGGTCATTTCACACGCC 59.824 61.111 0.00 0.00 44.01 5.68
3498 7060 2.474266 CGGTCATTTCACACGCCG 59.526 61.111 0.00 0.00 0.00 6.46
3499 7061 2.314647 CGGTCATTTCACACGCCGT 61.315 57.895 0.00 0.00 35.11 5.68
3500 7062 1.009903 CGGTCATTTCACACGCCGTA 61.010 55.000 0.00 0.00 35.11 4.02
3501 7063 1.365699 GGTCATTTCACACGCCGTAT 58.634 50.000 0.00 0.00 0.00 3.06
3502 7064 1.735571 GGTCATTTCACACGCCGTATT 59.264 47.619 0.00 0.00 0.00 1.89
3503 7065 2.931325 GGTCATTTCACACGCCGTATTA 59.069 45.455 0.00 0.00 0.00 0.98
3504 7066 3.371591 GGTCATTTCACACGCCGTATTAA 59.628 43.478 0.00 0.00 0.00 1.40
3505 7067 4.142859 GGTCATTTCACACGCCGTATTAAA 60.143 41.667 0.00 0.00 0.00 1.52
3506 7068 5.383958 GTCATTTCACACGCCGTATTAAAA 58.616 37.500 0.00 0.00 0.00 1.52
3507 7069 6.025280 GTCATTTCACACGCCGTATTAAAAT 58.975 36.000 0.00 0.00 0.00 1.82
3508 7070 7.181418 GTCATTTCACACGCCGTATTAAAATA 58.819 34.615 0.00 0.00 0.00 1.40
3509 7071 7.163032 GTCATTTCACACGCCGTATTAAAATAC 59.837 37.037 0.00 3.25 38.27 1.89
3561 7147 2.202703 GCGTACGCCCGAGTGATT 60.203 61.111 29.51 0.00 34.56 2.57
4010 7632 3.003480 GGCTGAAATAGGATATGACGGC 58.997 50.000 0.00 0.00 0.00 5.68
4054 7676 4.023450 CGGATCATTGTCATTGGATGAAGG 60.023 45.833 0.00 0.00 41.69 3.46
4055 7677 4.280174 GGATCATTGTCATTGGATGAAGGG 59.720 45.833 0.00 0.00 41.69 3.95
4067 7689 2.091665 GGATGAAGGGGAACATGATGGT 60.092 50.000 0.00 0.00 0.00 3.55
4101 7723 6.911250 TGAGTTTGGATGAGTCTTACAGTA 57.089 37.500 0.00 0.00 0.00 2.74
4142 7764 9.454585 CTGCATGTTGTCAACCATATTAAATAG 57.545 33.333 13.13 0.00 0.00 1.73
4182 7816 6.255453 ACAATAACATGTTTGACTTTGCACAC 59.745 34.615 17.78 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.098196 CCGAAAGTGGTTTCCCAAAACTTA 59.902 41.667 1.53 0.00 44.15 2.24
86 87 2.586792 CCGCTTCTCTTCCCCCAG 59.413 66.667 0.00 0.00 0.00 4.45
101 102 1.799258 GCCCTCATTGCAATAGCCCG 61.799 60.000 12.53 0.00 41.13 6.13
141 142 0.185901 AAAGCCTTCTGTGGGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91
149 150 0.767375 TCTCCAGCAAAGCCTTCTGT 59.233 50.000 0.00 0.00 0.00 3.41
156 157 0.328258 TAGGGGTTCTCCAGCAAAGC 59.672 55.000 0.00 0.00 37.22 3.51
160 161 2.305927 CTCTTTTAGGGGTTCTCCAGCA 59.694 50.000 0.00 0.00 37.22 4.41
185 186 0.790207 ATATAATTCAGGCGCACGCG 59.210 50.000 10.83 3.53 43.06 6.01
247 249 0.399075 TTCCTTCCCTCCGTTCCAAC 59.601 55.000 0.00 0.00 0.00 3.77
250 252 0.691332 AACTTCCTTCCCTCCGTTCC 59.309 55.000 0.00 0.00 0.00 3.62
254 256 2.814336 CAAGAAAACTTCCTTCCCTCCG 59.186 50.000 0.00 0.00 0.00 4.63
279 281 7.324388 TCTCTTCCAACTACCCATTTTCTTA 57.676 36.000 0.00 0.00 0.00 2.10
284 286 4.601857 TCCTTCTCTTCCAACTACCCATTT 59.398 41.667 0.00 0.00 0.00 2.32
296 298 3.074412 TGCAACGATTTCCTTCTCTTCC 58.926 45.455 0.00 0.00 0.00 3.46
306 308 2.770865 CGACGCTTTATGCAACGATTTC 59.229 45.455 0.00 0.00 43.06 2.17
308 310 1.062002 CCGACGCTTTATGCAACGATT 59.938 47.619 0.00 0.00 43.06 3.34
323 325 1.638388 ATGACAGCATTGTGCCGACG 61.638 55.000 0.00 0.00 46.52 5.12
326 328 1.515519 GCATGACAGCATTGTGCCG 60.516 57.895 0.00 0.00 46.52 5.69
406 408 8.135529 GGCAAGACAAACTTTTACAAGAGTAAT 58.864 33.333 0.00 0.00 39.78 1.89
409 411 5.417580 TGGCAAGACAAACTTTTACAAGAGT 59.582 36.000 0.00 0.00 36.61 3.24
466 471 8.781196 CAGTAGCAGCATTTCTACAATGATATT 58.219 33.333 0.00 0.00 38.05 1.28
468 473 6.707608 CCAGTAGCAGCATTTCTACAATGATA 59.292 38.462 0.00 0.00 38.05 2.15
473 478 3.009723 GCCAGTAGCAGCATTTCTACAA 58.990 45.455 0.00 0.00 42.97 2.41
514 521 9.353431 TGTCAGCAATATCAACATGGTAATAAT 57.647 29.630 0.00 0.00 0.00 1.28
542 550 5.757886 ACAAACAAACAATATGGACTCACG 58.242 37.500 0.00 0.00 0.00 4.35
549 557 9.834628 AAGTATTCGTACAAACAAACAATATGG 57.165 29.630 0.00 0.00 0.00 2.74
568 576 5.460419 CCAGCGATCAGAGTACAAAGTATTC 59.540 44.000 0.00 0.00 0.00 1.75
569 577 5.105310 ACCAGCGATCAGAGTACAAAGTATT 60.105 40.000 0.00 0.00 0.00 1.89
570 578 4.402793 ACCAGCGATCAGAGTACAAAGTAT 59.597 41.667 0.00 0.00 0.00 2.12
571 579 3.762288 ACCAGCGATCAGAGTACAAAGTA 59.238 43.478 0.00 0.00 0.00 2.24
572 580 2.563179 ACCAGCGATCAGAGTACAAAGT 59.437 45.455 0.00 0.00 0.00 2.66
573 581 3.238108 ACCAGCGATCAGAGTACAAAG 57.762 47.619 0.00 0.00 0.00 2.77
577 585 2.186076 CGAAACCAGCGATCAGAGTAC 58.814 52.381 0.00 0.00 0.00 2.73
596 604 6.583912 ATTACAAGGATTACAACGATGACG 57.416 37.500 0.00 0.00 45.75 4.35
598 606 9.825109 TGATTATTACAAGGATTACAACGATGA 57.175 29.630 0.00 0.00 0.00 2.92
610 618 9.476202 CAGTCGTTCATATGATTATTACAAGGA 57.524 33.333 6.17 0.00 0.00 3.36
611 619 9.261180 ACAGTCGTTCATATGATTATTACAAGG 57.739 33.333 6.17 0.00 0.00 3.61
639 647 7.060403 GCAAATCTCTCTCGATTCAAACAAAAG 59.940 37.037 0.00 0.00 32.69 2.27
644 652 4.092091 ACGCAAATCTCTCTCGATTCAAAC 59.908 41.667 0.00 0.00 32.69 2.93
687 1610 6.849588 ATTGTGGCTTGACAAATTTTTCTC 57.150 33.333 5.95 0.00 39.25 2.87
732 1665 6.156519 GGCTTTGACAAATTTTGGTACTAGG 58.843 40.000 13.42 4.13 34.12 3.02
771 1704 6.661805 TCATAAATTTGGGTAGTTGTTCCCTC 59.338 38.462 0.00 0.00 43.74 4.30
779 1712 6.926630 TTGCCTTCATAAATTTGGGTAGTT 57.073 33.333 0.00 0.00 0.00 2.24
782 1715 8.144862 AGAATTTGCCTTCATAAATTTGGGTA 57.855 30.769 0.00 0.00 36.81 3.69
784 1717 7.225341 GCTAGAATTTGCCTTCATAAATTTGGG 59.775 37.037 0.00 0.00 36.81 4.12
785 1718 7.765360 TGCTAGAATTTGCCTTCATAAATTTGG 59.235 33.333 0.00 0.00 36.81 3.28
786 1719 8.706492 TGCTAGAATTTGCCTTCATAAATTTG 57.294 30.769 0.00 0.00 36.81 2.32
836 4278 4.752879 TGGTAACGCGGCAGCCTC 62.753 66.667 12.47 0.00 41.18 4.70
869 4311 2.065007 TGGATGGAATGGGGATTCGAT 58.935 47.619 0.00 0.00 32.81 3.59
870 4312 1.517238 TGGATGGAATGGGGATTCGA 58.483 50.000 0.00 0.00 0.00 3.71
871 4313 2.440409 GATGGATGGAATGGGGATTCG 58.560 52.381 0.00 0.00 0.00 3.34
941 4393 4.449391 GGCTTTAATAGGCGCCGA 57.551 55.556 23.20 18.26 39.90 5.54
952 4404 4.467084 CCCTCTGCCGCGGCTTTA 62.467 66.667 45.79 30.47 42.51 1.85
985 4438 4.514577 CATCCTCTCCGGCGCGTT 62.515 66.667 8.43 0.00 0.00 4.84
1292 4757 2.602676 TAGCACACCTTGAGCCCCC 61.603 63.158 0.00 0.00 34.43 5.40
1369 4834 2.829458 GTCGGACGGGGAGGAGAG 60.829 72.222 0.00 0.00 0.00 3.20
1758 5246 4.849329 CCGCTGTACCGGTCGAGC 62.849 72.222 22.32 22.32 43.24 5.03
2347 5854 2.352127 GGTAGTGGTGGTCGTTGTAGAC 60.352 54.545 0.00 0.00 40.25 2.59
2503 6010 1.738099 CAAACGTCCTCAGCCTCGG 60.738 63.158 0.00 0.00 0.00 4.63
2505 6012 1.205893 AGATCAAACGTCCTCAGCCTC 59.794 52.381 0.00 0.00 0.00 4.70
2550 6057 4.452733 CCGAACTCCGTCAGGCCC 62.453 72.222 0.00 0.00 37.47 5.80
2724 6250 2.515290 TAGATCGCGTCGCCCTCA 60.515 61.111 12.44 0.00 0.00 3.86
2796 6322 3.710722 CAGAGGCCGCTGTCCCTT 61.711 66.667 26.79 0.00 0.00 3.95
2904 6430 0.318441 TCACCAGCTCCTTGACGAAG 59.682 55.000 0.00 0.00 0.00 3.79
3003 6535 3.303135 AGCGCCGACTCCTTGTCA 61.303 61.111 2.29 0.00 45.60 3.58
3115 6647 2.922950 CGCCACCAACAGCAGCAAT 61.923 57.895 0.00 0.00 0.00 3.56
3116 6648 3.594775 CGCCACCAACAGCAGCAA 61.595 61.111 0.00 0.00 0.00 3.91
3143 6678 3.120385 CAGCAGCATCAACGGCGA 61.120 61.111 16.62 0.00 35.76 5.54
3312 6874 6.378710 TCAGGTATTTGACGATCTACTCAG 57.621 41.667 0.00 0.00 0.00 3.35
3332 6894 5.163913 GCAACACAGACTAAACTAGCATCAG 60.164 44.000 0.00 0.00 0.00 2.90
3335 6897 4.003648 GGCAACACAGACTAAACTAGCAT 58.996 43.478 0.00 0.00 0.00 3.79
3344 6906 4.040339 TCAATCTTGAGGCAACACAGACTA 59.960 41.667 0.00 0.00 38.79 2.59
3388 6950 3.192001 AGCAACGAGTTTACTGATCCGTA 59.808 43.478 0.00 0.00 0.00 4.02
3389 6951 2.029290 AGCAACGAGTTTACTGATCCGT 60.029 45.455 0.00 0.00 0.00 4.69
3390 6952 2.607187 AGCAACGAGTTTACTGATCCG 58.393 47.619 0.00 0.00 0.00 4.18
3396 6958 6.510536 AGTACTACAAAGCAACGAGTTTACT 58.489 36.000 0.00 0.00 0.00 2.24
3416 6978 0.037232 AAGCGCACCTCTTGGAGTAC 60.037 55.000 11.47 0.00 37.04 2.73
3425 6987 1.373748 TTGTACCGAAGCGCACCTC 60.374 57.895 11.47 1.58 0.00 3.85
3426 6988 1.666872 GTTGTACCGAAGCGCACCT 60.667 57.895 11.47 0.00 0.00 4.00
3427 6989 1.957186 TGTTGTACCGAAGCGCACC 60.957 57.895 11.47 0.00 0.00 5.01
3428 6990 1.203313 GTGTTGTACCGAAGCGCAC 59.797 57.895 11.47 1.68 0.00 5.34
3429 6991 1.227292 TGTGTTGTACCGAAGCGCA 60.227 52.632 11.47 0.00 0.00 6.09
3430 6992 1.203313 GTGTGTTGTACCGAAGCGC 59.797 57.895 0.00 0.00 0.00 5.92
3431 6993 0.231279 GTGTGTGTTGTACCGAAGCG 59.769 55.000 0.00 0.00 0.00 4.68
3432 6994 1.004292 GTGTGTGTGTTGTACCGAAGC 60.004 52.381 0.00 0.00 0.00 3.86
3433 6995 2.029970 GTGTGTGTGTGTTGTACCGAAG 59.970 50.000 0.00 0.00 0.00 3.79
3434 6996 2.001159 GTGTGTGTGTGTTGTACCGAA 58.999 47.619 0.00 0.00 0.00 4.30
3435 6997 1.067071 TGTGTGTGTGTGTTGTACCGA 60.067 47.619 0.00 0.00 0.00 4.69
3436 6998 1.061421 GTGTGTGTGTGTGTTGTACCG 59.939 52.381 0.00 0.00 0.00 4.02
3437 6999 2.077627 TGTGTGTGTGTGTGTTGTACC 58.922 47.619 0.00 0.00 0.00 3.34
3438 7000 2.159626 GGTGTGTGTGTGTGTGTTGTAC 60.160 50.000 0.00 0.00 0.00 2.90
3439 7001 2.077627 GGTGTGTGTGTGTGTGTTGTA 58.922 47.619 0.00 0.00 0.00 2.41
3440 7002 0.878416 GGTGTGTGTGTGTGTGTTGT 59.122 50.000 0.00 0.00 0.00 3.32
3441 7003 0.170116 GGGTGTGTGTGTGTGTGTTG 59.830 55.000 0.00 0.00 0.00 3.33
3442 7004 0.963355 GGGGTGTGTGTGTGTGTGTT 60.963 55.000 0.00 0.00 0.00 3.32
3443 7005 1.377987 GGGGTGTGTGTGTGTGTGT 60.378 57.895 0.00 0.00 0.00 3.72
3444 7006 2.118404 GGGGGTGTGTGTGTGTGTG 61.118 63.158 0.00 0.00 0.00 3.82
3445 7007 2.274104 GGGGGTGTGTGTGTGTGT 59.726 61.111 0.00 0.00 0.00 3.72
3459 7021 2.105306 CCTACCCTTTATACGTTGGGGG 59.895 54.545 0.00 1.51 43.72 5.40
3460 7022 2.486013 GCCTACCCTTTATACGTTGGGG 60.486 54.545 0.00 1.10 43.72 4.96
3461 7023 2.804212 CGCCTACCCTTTATACGTTGGG 60.804 54.545 0.00 0.68 44.89 4.12
3462 7024 2.476821 CGCCTACCCTTTATACGTTGG 58.523 52.381 0.00 0.00 0.00 3.77
3463 7025 2.159057 ACCGCCTACCCTTTATACGTTG 60.159 50.000 0.00 0.00 0.00 4.10
3464 7026 2.101415 GACCGCCTACCCTTTATACGTT 59.899 50.000 0.00 0.00 0.00 3.99
3465 7027 1.683385 GACCGCCTACCCTTTATACGT 59.317 52.381 0.00 0.00 0.00 3.57
3466 7028 1.682854 TGACCGCCTACCCTTTATACG 59.317 52.381 0.00 0.00 0.00 3.06
3467 7029 4.347360 AATGACCGCCTACCCTTTATAC 57.653 45.455 0.00 0.00 0.00 1.47
3468 7030 4.409574 TGAAATGACCGCCTACCCTTTATA 59.590 41.667 0.00 0.00 0.00 0.98
3469 7031 3.201266 TGAAATGACCGCCTACCCTTTAT 59.799 43.478 0.00 0.00 0.00 1.40
3470 7032 2.572556 TGAAATGACCGCCTACCCTTTA 59.427 45.455 0.00 0.00 0.00 1.85
3471 7033 1.353022 TGAAATGACCGCCTACCCTTT 59.647 47.619 0.00 0.00 0.00 3.11
3472 7034 0.988832 TGAAATGACCGCCTACCCTT 59.011 50.000 0.00 0.00 0.00 3.95
3473 7035 0.252197 GTGAAATGACCGCCTACCCT 59.748 55.000 0.00 0.00 0.00 4.34
3474 7036 0.035820 TGTGAAATGACCGCCTACCC 60.036 55.000 0.00 0.00 0.00 3.69
3475 7037 1.084289 GTGTGAAATGACCGCCTACC 58.916 55.000 0.00 0.00 0.00 3.18
3476 7038 0.719465 CGTGTGAAATGACCGCCTAC 59.281 55.000 0.00 0.00 0.00 3.18
3477 7039 1.017177 GCGTGTGAAATGACCGCCTA 61.017 55.000 0.00 0.00 38.52 3.93
3478 7040 2.325082 GCGTGTGAAATGACCGCCT 61.325 57.895 0.00 0.00 38.52 5.52
3479 7041 2.175811 GCGTGTGAAATGACCGCC 59.824 61.111 0.00 0.00 38.52 6.13
3480 7042 2.175811 GGCGTGTGAAATGACCGC 59.824 61.111 0.00 0.00 43.35 5.68
3481 7043 1.009903 TACGGCGTGTGAAATGACCG 61.010 55.000 24.86 0.00 45.86 4.79
3482 7044 1.365699 ATACGGCGTGTGAAATGACC 58.634 50.000 24.86 0.00 0.00 4.02
3483 7045 4.587211 TTAATACGGCGTGTGAAATGAC 57.413 40.909 24.86 0.00 0.00 3.06
3484 7046 5.608676 TTTTAATACGGCGTGTGAAATGA 57.391 34.783 24.86 4.81 0.00 2.57
3485 7047 6.412653 GGTATTTTAATACGGCGTGTGAAATG 59.587 38.462 26.32 0.00 41.66 2.32
3486 7048 6.458615 GGGTATTTTAATACGGCGTGTGAAAT 60.459 38.462 24.86 24.15 41.66 2.17
3487 7049 5.163774 GGGTATTTTAATACGGCGTGTGAAA 60.164 40.000 24.86 19.07 41.66 2.69
3488 7050 4.332268 GGGTATTTTAATACGGCGTGTGAA 59.668 41.667 24.86 13.32 41.66 3.18
3489 7051 3.870419 GGGTATTTTAATACGGCGTGTGA 59.130 43.478 24.86 6.18 41.66 3.58
3490 7052 3.302610 CGGGTATTTTAATACGGCGTGTG 60.303 47.826 24.86 0.00 41.66 3.82
3491 7053 2.865551 CGGGTATTTTAATACGGCGTGT 59.134 45.455 24.86 14.45 41.66 4.49
3492 7054 2.348779 GCGGGTATTTTAATACGGCGTG 60.349 50.000 24.86 1.32 41.66 5.34
3493 7055 1.866601 GCGGGTATTTTAATACGGCGT 59.133 47.619 19.64 19.64 41.66 5.68
3494 7056 2.582446 GCGGGTATTTTAATACGGCG 57.418 50.000 4.80 4.80 41.66 6.46
3495 7057 1.398832 GCGCGGGTATTTTAATACGGC 60.399 52.381 8.83 13.10 41.66 5.68
3496 7058 1.136557 CGCGCGGGTATTTTAATACGG 60.137 52.381 24.84 3.35 41.66 4.02
3497 7059 1.719295 GCGCGCGGGTATTTTAATACG 60.719 52.381 33.06 7.29 41.66 3.06
3498 7060 1.261089 TGCGCGCGGGTATTTTAATAC 59.739 47.619 33.06 10.19 40.37 1.89
3499 7061 1.261089 GTGCGCGCGGGTATTTTAATA 59.739 47.619 33.06 0.00 0.00 0.98
3500 7062 0.028374 GTGCGCGCGGGTATTTTAAT 59.972 50.000 33.06 0.00 0.00 1.40
3501 7063 1.424635 GTGCGCGCGGGTATTTTAA 59.575 52.632 33.06 0.47 0.00 1.52
3502 7064 2.800581 CGTGCGCGCGGGTATTTTA 61.801 57.895 34.14 1.38 0.00 1.52
3503 7065 4.155288 CGTGCGCGCGGGTATTTT 62.155 61.111 34.14 0.00 0.00 1.82
3568 7154 2.281276 GGTTCGCCCGGTCAGTTT 60.281 61.111 0.00 0.00 0.00 2.66
3590 7176 2.357034 GGCTGAGGCGACGTGAAA 60.357 61.111 0.00 0.00 39.81 2.69
3928 7546 4.986034 TCAAACATCACGTAACATCTTCGT 59.014 37.500 0.00 0.00 38.34 3.85
4010 7632 1.730902 CTCGCTACCGCCATCATCG 60.731 63.158 0.00 0.00 0.00 3.84
4054 7676 8.859090 TCATATAATTTTCACCATCATGTTCCC 58.141 33.333 0.00 0.00 0.00 3.97
4055 7677 9.903682 CTCATATAATTTTCACCATCATGTTCC 57.096 33.333 0.00 0.00 0.00 3.62
4101 7723 2.566833 TGCAGACCACTTACATTGCT 57.433 45.000 0.00 0.00 33.00 3.91
4142 7764 0.940126 ATTGTCATCGCGGATGCTTC 59.060 50.000 6.13 4.27 39.63 3.86
4182 7816 4.287845 TCATTGTCATCATCCCCTCCTATG 59.712 45.833 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.