Multiple sequence alignment - TraesCS3A01G412900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G412900 chr3A 100.000 3134 0 0 1 3134 656133822 656136955 0.000000e+00 5788.0
1 TraesCS3A01G412900 chr3A 90.440 1318 90 18 1038 2346 656254299 656255589 0.000000e+00 1703.0
2 TraesCS3A01G412900 chr3A 88.235 1360 106 31 992 2335 656423914 656425235 0.000000e+00 1576.0
3 TraesCS3A01G412900 chr3A 90.013 791 57 13 1564 2346 656339249 656340025 0.000000e+00 1003.0
4 TraesCS3A01G412900 chr3A 88.153 785 75 15 2356 3132 393846528 393847302 0.000000e+00 918.0
5 TraesCS3A01G412900 chr3A 87.389 785 92 6 2355 3134 591002090 591002872 0.000000e+00 894.0
6 TraesCS3A01G412900 chr3A 91.192 579 47 4 2557 3134 113367846 113368421 0.000000e+00 784.0
7 TraesCS3A01G412900 chr3A 74.226 1001 211 37 1103 2093 597234722 597233759 2.950000e-100 375.0
8 TraesCS3A01G412900 chr3A 93.578 218 11 3 2350 2565 664249284 664249068 3.900000e-84 322.0
9 TraesCS3A01G412900 chr3A 80.000 160 8 10 608 763 656253954 656254093 2.570000e-16 97.1
10 TraesCS3A01G412900 chr3A 80.000 160 8 10 608 763 656423604 656423743 2.570000e-16 97.1
11 TraesCS3A01G412900 chr3B 94.091 1760 60 15 608 2352 686491759 686493489 0.000000e+00 2634.0
12 TraesCS3A01G412900 chr3B 84.104 1774 151 75 608 2338 686524121 686525806 0.000000e+00 1592.0
13 TraesCS3A01G412900 chr3B 92.697 178 13 0 1 178 686491406 686491583 1.120000e-64 257.0
14 TraesCS3A01G412900 chr3B 74.281 591 123 23 1103 1684 39581671 39581101 4.070000e-54 222.0
15 TraesCS3A01G412900 chr3B 97.959 98 2 0 467 564 686491589 686491686 1.490000e-38 171.0
16 TraesCS3A01G412900 chr3D 92.150 1898 93 28 481 2352 520823698 520825565 0.000000e+00 2628.0
17 TraesCS3A01G412900 chr3D 84.576 1757 149 65 608 2320 520862390 520864068 0.000000e+00 1631.0
18 TraesCS3A01G412900 chr3D 74.280 1007 212 36 1097 2093 454219320 454220289 6.340000e-102 381.0
19 TraesCS3A01G412900 chr3D 91.753 194 13 3 1 193 520823487 520823678 1.850000e-67 267.0
20 TraesCS3A01G412900 chr6A 88.369 791 77 14 2352 3134 56412385 56413168 0.000000e+00 937.0
21 TraesCS3A01G412900 chr6A 98.571 280 4 0 190 469 371732392 371732671 2.170000e-136 496.0
22 TraesCS3A01G412900 chr6A 96.552 290 7 2 193 481 38758091 38757804 7.860000e-131 477.0
23 TraesCS3A01G412900 chr6A 94.884 215 9 2 2353 2565 252798734 252798520 5.010000e-88 335.0
24 TraesCS3A01G412900 chr4A 87.039 787 88 14 2353 3134 301461913 301462690 0.000000e+00 876.0
25 TraesCS3A01G412900 chr4A 97.163 282 7 1 190 471 11322638 11322918 2.830000e-130 475.0
26 TraesCS3A01G412900 chr4A 93.548 217 12 2 2348 2562 295684855 295685071 3.900000e-84 322.0
27 TraesCS3A01G412900 chr1A 85.516 794 97 16 2348 3134 171668604 171669386 0.000000e+00 813.0
28 TraesCS3A01G412900 chr1A 91.207 580 44 7 2557 3134 75425817 75425243 0.000000e+00 782.0
29 TraesCS3A01G412900 chr5A 91.812 574 44 3 2561 3134 57276741 57276171 0.000000e+00 797.0
30 TraesCS3A01G412900 chr5A 85.176 796 92 21 2353 3134 436384339 436385122 0.000000e+00 793.0
31 TraesCS3A01G412900 chr5A 91.434 572 46 3 2561 3132 57308887 57308319 0.000000e+00 782.0
32 TraesCS3A01G412900 chr5A 94.037 218 11 2 2350 2565 261985182 261984965 2.330000e-86 329.0
33 TraesCS3A01G412900 chr7A 91.207 580 45 6 2557 3134 664440519 664439944 0.000000e+00 784.0
34 TraesCS3A01G412900 chr7A 95.667 300 10 3 183 482 627156424 627156720 2.190000e-131 479.0
35 TraesCS3A01G412900 chr7A 97.500 280 6 1 193 472 182858002 182858280 7.860000e-131 477.0
36 TraesCS3A01G412900 chr7A 95.327 214 8 2 2351 2562 377951353 377951566 3.870000e-89 339.0
37 TraesCS3A01G412900 chr7D 82.103 799 112 26 2351 3134 230705704 230706486 0.000000e+00 654.0
38 TraesCS3A01G412900 chr2A 97.535 284 5 2 193 476 70704028 70704309 4.700000e-133 484.0
39 TraesCS3A01G412900 chr2A 93.636 220 12 2 2348 2565 438701001 438700782 8.380000e-86 327.0
40 TraesCS3A01G412900 chr2A 94.009 217 10 3 2348 2562 520324358 520324573 3.010000e-85 326.0
41 TraesCS3A01G412900 chr2A 93.488 215 12 2 2353 2565 298142928 298142714 5.040000e-83 318.0
42 TraesCS3A01G412900 chr7B 97.849 279 6 0 191 469 283010826 283010548 1.690000e-132 483.0
43 TraesCS3A01G412900 chr6B 97.518 282 7 0 193 474 143176382 143176101 1.690000e-132 483.0
44 TraesCS3A01G412900 chr5B 97.173 283 7 1 190 472 459570856 459571137 7.860000e-131 477.0
45 TraesCS3A01G412900 chr1B 74.505 455 103 9 1409 1858 16216867 16217313 5.340000e-43 185.0
46 TraesCS3A01G412900 chr5D 77.344 256 55 3 1376 1629 241276445 241276699 7.000000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G412900 chr3A 656133822 656136955 3133 False 5788.000000 5788 100.000000 1 3134 1 chr3A.!!$F4 3133
1 TraesCS3A01G412900 chr3A 656339249 656340025 776 False 1003.000000 1003 90.013000 1564 2346 1 chr3A.!!$F5 782
2 TraesCS3A01G412900 chr3A 393846528 393847302 774 False 918.000000 918 88.153000 2356 3132 1 chr3A.!!$F2 776
3 TraesCS3A01G412900 chr3A 656253954 656255589 1635 False 900.050000 1703 85.220000 608 2346 2 chr3A.!!$F6 1738
4 TraesCS3A01G412900 chr3A 591002090 591002872 782 False 894.000000 894 87.389000 2355 3134 1 chr3A.!!$F3 779
5 TraesCS3A01G412900 chr3A 656423604 656425235 1631 False 836.550000 1576 84.117500 608 2335 2 chr3A.!!$F7 1727
6 TraesCS3A01G412900 chr3A 113367846 113368421 575 False 784.000000 784 91.192000 2557 3134 1 chr3A.!!$F1 577
7 TraesCS3A01G412900 chr3A 597233759 597234722 963 True 375.000000 375 74.226000 1103 2093 1 chr3A.!!$R1 990
8 TraesCS3A01G412900 chr3B 686524121 686525806 1685 False 1592.000000 1592 84.104000 608 2338 1 chr3B.!!$F1 1730
9 TraesCS3A01G412900 chr3B 686491406 686493489 2083 False 1020.666667 2634 94.915667 1 2352 3 chr3B.!!$F2 2351
10 TraesCS3A01G412900 chr3B 39581101 39581671 570 True 222.000000 222 74.281000 1103 1684 1 chr3B.!!$R1 581
11 TraesCS3A01G412900 chr3D 520862390 520864068 1678 False 1631.000000 1631 84.576000 608 2320 1 chr3D.!!$F2 1712
12 TraesCS3A01G412900 chr3D 520823487 520825565 2078 False 1447.500000 2628 91.951500 1 2352 2 chr3D.!!$F3 2351
13 TraesCS3A01G412900 chr3D 454219320 454220289 969 False 381.000000 381 74.280000 1097 2093 1 chr3D.!!$F1 996
14 TraesCS3A01G412900 chr6A 56412385 56413168 783 False 937.000000 937 88.369000 2352 3134 1 chr6A.!!$F1 782
15 TraesCS3A01G412900 chr4A 301461913 301462690 777 False 876.000000 876 87.039000 2353 3134 1 chr4A.!!$F3 781
16 TraesCS3A01G412900 chr1A 171668604 171669386 782 False 813.000000 813 85.516000 2348 3134 1 chr1A.!!$F1 786
17 TraesCS3A01G412900 chr1A 75425243 75425817 574 True 782.000000 782 91.207000 2557 3134 1 chr1A.!!$R1 577
18 TraesCS3A01G412900 chr5A 57276171 57276741 570 True 797.000000 797 91.812000 2561 3134 1 chr5A.!!$R1 573
19 TraesCS3A01G412900 chr5A 436384339 436385122 783 False 793.000000 793 85.176000 2353 3134 1 chr5A.!!$F1 781
20 TraesCS3A01G412900 chr5A 57308319 57308887 568 True 782.000000 782 91.434000 2561 3132 1 chr5A.!!$R2 571
21 TraesCS3A01G412900 chr7A 664439944 664440519 575 True 784.000000 784 91.207000 2557 3134 1 chr7A.!!$R1 577
22 TraesCS3A01G412900 chr7D 230705704 230706486 782 False 654.000000 654 82.103000 2351 3134 1 chr7D.!!$F1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 215 0.033796 ATGAGGCTGGTCACAATGGG 60.034 55.0 0.0 0.0 0.00 4.00 F
326 333 0.034756 CCGGAACATCACACACTCCA 59.965 55.0 0.0 0.0 0.00 3.86 F
640 702 0.105964 CTCCCAAATATCACCGCCGA 59.894 55.0 0.0 0.0 0.00 5.54 F
1629 1740 1.244019 GGCTCATGGACAACGCCTTT 61.244 55.0 0.0 0.0 37.76 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1200 0.898320 ACTCCAGGTCATTGTCCTCG 59.102 55.000 0.00 0.00 32.37 4.63 R
1371 1479 1.222661 GTACATGAACCCCGGGACC 59.777 63.158 26.32 11.15 0.00 4.46 R
1732 1846 1.741401 CGTCGATGTGCACCACCAT 60.741 57.895 15.69 0.00 32.73 3.55 R
2794 2961 0.675837 ATGCTAGTGTGTGCTGCAGG 60.676 55.000 17.12 0.00 37.07 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.373590 AACCGCCATCAATACCGTGC 61.374 55.000 0.00 0.00 0.00 5.34
164 165 2.521708 ACCCCAAGCACAACAGCC 60.522 61.111 0.00 0.00 34.23 4.85
195 202 4.207203 CGTACTACGCGATGAGGC 57.793 61.111 15.93 3.91 33.65 4.70
196 203 1.647629 CGTACTACGCGATGAGGCT 59.352 57.895 15.93 0.00 33.65 4.58
197 204 0.657659 CGTACTACGCGATGAGGCTG 60.658 60.000 15.93 0.00 33.65 4.85
198 205 0.317938 GTACTACGCGATGAGGCTGG 60.318 60.000 15.93 0.00 0.00 4.85
199 206 0.750546 TACTACGCGATGAGGCTGGT 60.751 55.000 15.93 0.00 0.00 4.00
200 207 1.299468 CTACGCGATGAGGCTGGTC 60.299 63.158 15.93 0.00 0.00 4.02
201 208 2.004808 CTACGCGATGAGGCTGGTCA 62.005 60.000 15.93 0.00 0.00 4.02
202 209 2.279502 TACGCGATGAGGCTGGTCAC 62.280 60.000 15.93 0.00 0.00 3.67
203 210 2.265739 GCGATGAGGCTGGTCACA 59.734 61.111 0.00 0.00 0.00 3.58
204 211 1.375908 GCGATGAGGCTGGTCACAA 60.376 57.895 0.00 0.00 0.00 3.33
205 212 0.745845 GCGATGAGGCTGGTCACAAT 60.746 55.000 0.00 0.00 0.00 2.71
206 213 1.012086 CGATGAGGCTGGTCACAATG 58.988 55.000 0.00 0.00 0.00 2.82
207 214 1.386533 GATGAGGCTGGTCACAATGG 58.613 55.000 0.00 0.00 0.00 3.16
208 215 0.033796 ATGAGGCTGGTCACAATGGG 60.034 55.000 0.00 0.00 0.00 4.00
209 216 1.133181 TGAGGCTGGTCACAATGGGA 61.133 55.000 0.00 0.00 0.00 4.37
210 217 0.038166 GAGGCTGGTCACAATGGGAA 59.962 55.000 0.00 0.00 0.00 3.97
211 218 0.038744 AGGCTGGTCACAATGGGAAG 59.961 55.000 0.00 0.00 0.00 3.46
212 219 0.967380 GGCTGGTCACAATGGGAAGG 60.967 60.000 0.00 0.00 0.00 3.46
213 220 0.038166 GCTGGTCACAATGGGAAGGA 59.962 55.000 0.00 0.00 0.00 3.36
214 221 1.547675 GCTGGTCACAATGGGAAGGAA 60.548 52.381 0.00 0.00 0.00 3.36
215 222 2.162681 CTGGTCACAATGGGAAGGAAC 58.837 52.381 0.00 0.00 0.00 3.62
233 240 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
234 241 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
235 242 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
236 243 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
237 244 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
243 250 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
244 251 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
245 252 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
246 253 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
247 254 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
248 255 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
249 256 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
250 257 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
251 258 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
252 259 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
253 260 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
254 261 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
255 262 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
256 263 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
257 264 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
258 265 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
259 266 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
260 267 4.864247 CCAATACAACTTTGCTTATGTGGC 59.136 41.667 0.00 0.00 0.00 5.01
261 268 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
262 269 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
263 270 2.692557 ACAACTTTGCTTATGTGGCACA 59.307 40.909 24.36 24.36 39.55 4.57
264 271 3.321682 ACAACTTTGCTTATGTGGCACAT 59.678 39.130 33.18 33.18 44.52 3.21
265 272 4.522405 ACAACTTTGCTTATGTGGCACATA 59.478 37.500 31.06 31.06 44.52 2.29
266 273 5.185635 ACAACTTTGCTTATGTGGCACATAT 59.814 36.000 33.89 18.57 44.52 1.78
267 274 5.920193 ACTTTGCTTATGTGGCACATATT 57.080 34.783 33.89 17.87 44.52 1.28
268 275 6.284891 ACTTTGCTTATGTGGCACATATTT 57.715 33.333 33.89 17.52 44.52 1.40
269 276 7.403312 ACTTTGCTTATGTGGCACATATTTA 57.597 32.000 33.89 21.55 44.52 1.40
270 277 7.835822 ACTTTGCTTATGTGGCACATATTTAA 58.164 30.769 33.89 25.24 44.52 1.52
271 278 8.477256 ACTTTGCTTATGTGGCACATATTTAAT 58.523 29.630 33.89 15.77 44.52 1.40
272 279 8.645730 TTTGCTTATGTGGCACATATTTAATG 57.354 30.769 33.89 20.34 44.52 1.90
273 280 7.579761 TGCTTATGTGGCACATATTTAATGA 57.420 32.000 33.89 19.68 44.52 2.57
274 281 8.005192 TGCTTATGTGGCACATATTTAATGAA 57.995 30.769 33.89 20.49 44.52 2.57
275 282 8.136800 TGCTTATGTGGCACATATTTAATGAAG 58.863 33.333 33.89 27.40 44.52 3.02
276 283 8.352201 GCTTATGTGGCACATATTTAATGAAGA 58.648 33.333 33.89 17.83 44.52 2.87
277 284 9.888878 CTTATGTGGCACATATTTAATGAAGAG 57.111 33.333 33.89 22.09 44.52 2.85
278 285 9.625747 TTATGTGGCACATATTTAATGAAGAGA 57.374 29.630 33.89 16.11 44.52 3.10
279 286 7.558161 TGTGGCACATATTTAATGAAGAGAG 57.442 36.000 17.96 0.00 44.52 3.20
280 287 7.337938 TGTGGCACATATTTAATGAAGAGAGA 58.662 34.615 17.96 0.00 44.52 3.10
281 288 7.496920 TGTGGCACATATTTAATGAAGAGAGAG 59.503 37.037 17.96 0.00 44.52 3.20
282 289 6.994496 TGGCACATATTTAATGAAGAGAGAGG 59.006 38.462 0.00 0.00 0.00 3.69
283 290 6.995091 GGCACATATTTAATGAAGAGAGAGGT 59.005 38.462 0.00 0.00 0.00 3.85
284 291 7.041508 GGCACATATTTAATGAAGAGAGAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
285 292 7.519649 GCACATATTTAATGAAGAGAGAGGTGC 60.520 40.741 0.00 0.00 37.76 5.01
286 293 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
287 294 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
288 295 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
289 296 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
290 297 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
291 298 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
292 299 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
293 300 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
294 301 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
295 302 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
296 303 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
297 304 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
298 305 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
315 322 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
316 323 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
317 324 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
318 325 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
319 326 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
320 327 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
321 328 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
322 329 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
323 330 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
324 331 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
325 332 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
326 333 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
327 334 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
328 335 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
329 336 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
330 337 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
331 338 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
332 339 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
333 340 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
334 341 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
335 342 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
336 343 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
337 344 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
338 345 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
339 346 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
340 347 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
341 348 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
342 349 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
343 350 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
344 351 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
345 352 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
346 353 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
347 354 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
348 355 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
349 356 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
350 357 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
369 376 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
370 377 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
371 378 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
372 379 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
373 380 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
374 381 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
375 382 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
376 383 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
377 384 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
378 385 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
379 386 5.175127 ACATCGTTGCATGACACTACATAA 58.825 37.500 0.00 0.00 0.00 1.90
380 387 5.641636 ACATCGTTGCATGACACTACATAAA 59.358 36.000 0.00 0.00 0.00 1.40
381 388 6.316140 ACATCGTTGCATGACACTACATAAAT 59.684 34.615 0.00 0.00 0.00 1.40
382 389 6.105657 TCGTTGCATGACACTACATAAATG 57.894 37.500 0.00 0.00 0.00 2.32
383 390 5.641636 TCGTTGCATGACACTACATAAATGT 59.358 36.000 0.00 0.63 44.48 2.71
384 391 6.148645 TCGTTGCATGACACTACATAAATGTT 59.851 34.615 0.00 0.00 41.97 2.71
385 392 6.465781 CGTTGCATGACACTACATAAATGTTC 59.534 38.462 0.00 0.00 41.97 3.18
386 393 6.435430 TGCATGACACTACATAAATGTTCC 57.565 37.500 0.00 0.00 41.97 3.62
387 394 6.179756 TGCATGACACTACATAAATGTTCCT 58.820 36.000 0.00 0.00 41.97 3.36
388 395 7.334858 TGCATGACACTACATAAATGTTCCTA 58.665 34.615 0.00 0.00 41.97 2.94
389 396 7.279981 TGCATGACACTACATAAATGTTCCTAC 59.720 37.037 0.00 0.00 41.97 3.18
390 397 7.254795 GCATGACACTACATAAATGTTCCTACC 60.255 40.741 0.00 0.00 41.97 3.18
391 398 6.646267 TGACACTACATAAATGTTCCTACCC 58.354 40.000 0.12 0.00 41.97 3.69
392 399 6.213802 TGACACTACATAAATGTTCCTACCCA 59.786 38.462 0.12 0.00 41.97 4.51
393 400 6.412214 ACACTACATAAATGTTCCTACCCAC 58.588 40.000 0.12 0.00 41.97 4.61
394 401 6.214819 ACACTACATAAATGTTCCTACCCACT 59.785 38.462 0.12 0.00 41.97 4.00
395 402 7.400915 ACACTACATAAATGTTCCTACCCACTA 59.599 37.037 0.12 0.00 41.97 2.74
396 403 8.429641 CACTACATAAATGTTCCTACCCACTAT 58.570 37.037 0.12 0.00 41.97 2.12
397 404 8.429641 ACTACATAAATGTTCCTACCCACTATG 58.570 37.037 0.12 0.00 41.97 2.23
398 405 7.446106 ACATAAATGTTCCTACCCACTATGA 57.554 36.000 0.00 0.00 37.90 2.15
399 406 7.867921 ACATAAATGTTCCTACCCACTATGAA 58.132 34.615 0.00 0.00 37.90 2.57
400 407 7.993183 ACATAAATGTTCCTACCCACTATGAAG 59.007 37.037 0.00 0.00 37.90 3.02
401 408 6.636454 AAATGTTCCTACCCACTATGAAGA 57.364 37.500 0.00 0.00 0.00 2.87
402 409 6.831664 AATGTTCCTACCCACTATGAAGAT 57.168 37.500 0.00 0.00 0.00 2.40
403 410 7.931015 AATGTTCCTACCCACTATGAAGATA 57.069 36.000 0.00 0.00 0.00 1.98
404 411 6.978674 TGTTCCTACCCACTATGAAGATAG 57.021 41.667 0.00 0.00 38.06 2.08
405 412 6.441222 TGTTCCTACCCACTATGAAGATAGT 58.559 40.000 0.00 0.00 44.86 2.12
406 413 7.589081 TGTTCCTACCCACTATGAAGATAGTA 58.411 38.462 0.00 0.00 42.55 1.82
407 414 8.063153 TGTTCCTACCCACTATGAAGATAGTAA 58.937 37.037 0.00 0.00 42.55 2.24
408 415 9.091220 GTTCCTACCCACTATGAAGATAGTAAT 57.909 37.037 0.00 0.00 42.55 1.89
435 442 7.370905 AGTTTAGGGAAGTGTGTAAGTTACT 57.629 36.000 14.00 0.00 0.00 2.24
436 443 8.482852 AGTTTAGGGAAGTGTGTAAGTTACTA 57.517 34.615 14.00 1.06 0.00 1.82
437 444 8.583296 AGTTTAGGGAAGTGTGTAAGTTACTAG 58.417 37.037 14.00 0.00 0.00 2.57
438 445 5.402997 AGGGAAGTGTGTAAGTTACTAGC 57.597 43.478 14.00 5.48 0.00 3.42
439 446 5.085219 AGGGAAGTGTGTAAGTTACTAGCT 58.915 41.667 14.00 6.35 0.00 3.32
440 447 5.543020 AGGGAAGTGTGTAAGTTACTAGCTT 59.457 40.000 14.00 13.25 0.00 3.74
441 448 6.723052 AGGGAAGTGTGTAAGTTACTAGCTTA 59.277 38.462 14.00 0.00 0.00 3.09
442 449 7.399478 AGGGAAGTGTGTAAGTTACTAGCTTAT 59.601 37.037 14.00 3.60 32.01 1.73
443 450 7.491696 GGGAAGTGTGTAAGTTACTAGCTTATG 59.508 40.741 14.00 0.00 32.01 1.90
444 451 8.033626 GGAAGTGTGTAAGTTACTAGCTTATGT 58.966 37.037 14.00 0.00 32.01 2.29
445 452 9.420551 GAAGTGTGTAAGTTACTAGCTTATGTT 57.579 33.333 14.00 0.00 32.01 2.71
446 453 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
447 454 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
448 455 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
449 456 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
450 457 8.381387 GTGTAAGTTACTAGCTTATGTTCTTGC 58.619 37.037 14.00 3.08 32.01 4.01
451 458 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
452 459 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
453 460 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
454 461 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
455 462 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
456 463 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
457 464 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
458 465 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
459 466 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
460 467 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
461 468 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
462 469 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
463 470 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
464 471 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
465 472 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
550 565 1.114627 ACGATCAGCAGGCTATCACA 58.885 50.000 0.00 0.00 0.00 3.58
568 583 3.499737 GCCGGCGGTGATCAAGTG 61.500 66.667 28.82 0.00 0.00 3.16
573 588 1.003839 GCGGTGATCAAGTGACCCA 60.004 57.895 0.00 0.00 0.00 4.51
591 606 5.885352 TGACCCAAACATACGAATGAATCAT 59.115 36.000 0.00 0.00 36.54 2.45
601 616 2.029623 GAATGAATCATGCCTGCACCT 58.970 47.619 0.00 0.00 0.00 4.00
602 617 1.399714 ATGAATCATGCCTGCACCTG 58.600 50.000 0.00 0.00 0.00 4.00
604 619 2.012902 GAATCATGCCTGCACCTGGC 62.013 60.000 8.48 8.48 46.46 4.85
640 702 0.105964 CTCCCAAATATCACCGCCGA 59.894 55.000 0.00 0.00 0.00 5.54
660 722 2.653115 GCAACTTGGGAGCAAGCC 59.347 61.111 0.00 0.00 35.70 4.35
914 995 4.399303 TCATCATCTCACACTCGAAGCTAA 59.601 41.667 0.00 0.00 0.00 3.09
927 1008 4.561452 GCTAACTAGCCCCCAAGC 57.439 61.111 0.00 0.00 43.39 4.01
979 1078 2.126071 CAGCTCGTGGTGTACCGG 60.126 66.667 0.00 0.00 39.43 5.28
980 1079 4.065281 AGCTCGTGGTGTACCGGC 62.065 66.667 0.00 0.00 39.43 6.13
1043 1151 4.344865 GGTGGCGTCCATGGTGGT 62.345 66.667 12.58 0.00 39.03 4.16
1101 1209 1.443407 CATCCCGCTCGAGGACAAT 59.557 57.895 15.58 0.00 35.85 2.71
1629 1740 1.244019 GGCTCATGGACAACGCCTTT 61.244 55.000 0.00 0.00 37.76 3.11
1974 2088 1.671379 GGTGAAGAACTCGTGGGGC 60.671 63.158 0.00 0.00 0.00 5.80
2148 2283 3.885901 CTCAGTGATCGTCCCAATCTCTA 59.114 47.826 0.00 0.00 0.00 2.43
2357 2506 9.781633 TGTACTGGTAATGTTTGTAAGTGTAAT 57.218 29.630 0.00 0.00 0.00 1.89
2381 2530 1.474478 CACGATGCGGCTATATCTCCT 59.526 52.381 0.00 0.00 0.00 3.69
2470 2624 7.141758 ACACATCCCATGTACTGAATAAGAT 57.858 36.000 0.00 0.00 42.70 2.40
2472 2626 8.713971 ACACATCCCATGTACTGAATAAGATAA 58.286 33.333 0.00 0.00 42.70 1.75
2522 2681 8.673711 GCCACTTCACACAATACAAGAATATAA 58.326 33.333 0.00 0.00 0.00 0.98
2559 2718 5.980116 CAGAATACAATCAAGGTCCGACTAG 59.020 44.000 0.00 0.00 0.00 2.57
2614 2778 5.299279 ACTGATCAACTGGAAACGAAACAAT 59.701 36.000 0.00 0.00 0.00 2.71
2617 2781 5.427036 TCAACTGGAAACGAAACAATACC 57.573 39.130 0.00 0.00 0.00 2.73
2661 2825 1.373873 CACTTGAGCTCAGCTGCGA 60.374 57.895 17.43 0.00 39.88 5.10
2671 2835 2.435586 AGCTGCGACATCTGCACC 60.436 61.111 0.00 0.00 37.44 5.01
2677 2841 0.810031 GCGACATCTGCACCGGTATT 60.810 55.000 6.87 0.00 0.00 1.89
2709 2874 5.242838 CCTGCAACTGGTTTTGGAAGTAATA 59.757 40.000 0.00 0.00 0.00 0.98
2738 2903 1.909302 ACGGGGACTCAACAATCTCAT 59.091 47.619 0.00 0.00 0.00 2.90
2794 2961 2.638363 AGGAAAAGGTAGTGAGGTGGAC 59.362 50.000 0.00 0.00 0.00 4.02
2804 2971 3.170672 AGGTGGACCTGCAGCACA 61.171 61.111 20.13 11.09 46.55 4.57
2860 3029 2.037772 AGAGCGAGAAGAGAAGGCAAAA 59.962 45.455 0.00 0.00 0.00 2.44
2910 3082 7.885009 AGAAGTGATCCTAGAACTACTTACC 57.115 40.000 0.00 0.00 0.00 2.85
2929 3101 4.853924 ACCTTCAAGCATAACACCAAAG 57.146 40.909 0.00 0.00 0.00 2.77
2964 3136 0.175989 GGACTCCGCCGAAAAGAGAT 59.824 55.000 0.00 0.00 0.00 2.75
3016 3190 8.427774 GCATTTTAATTAAGTCAAGTGTCAAGC 58.572 33.333 0.00 0.00 0.00 4.01
3023 3197 8.854614 ATTAAGTCAAGTGTCAAGCTCTTTAT 57.145 30.769 0.00 0.00 0.00 1.40
3037 3211 7.990886 TCAAGCTCTTTATAACCGGACATTAAT 59.009 33.333 9.46 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.278271 CGGCGGTTGTTTGCGTTT 60.278 55.556 0.00 0.00 0.00 3.60
65 66 2.761767 TGCTCCGCCACTGTATTAACTA 59.238 45.455 0.00 0.00 0.00 2.24
93 94 0.620556 ATTGATGGCGGTTGAGGAGT 59.379 50.000 0.00 0.00 0.00 3.85
119 120 3.013219 TGAGTCTGTCGAGAGGATCAAG 58.987 50.000 10.02 0.00 37.82 3.02
178 185 0.657659 CAGCCTCATCGCGTAGTACG 60.658 60.000 18.37 18.37 45.88 3.67
180 187 0.750546 ACCAGCCTCATCGCGTAGTA 60.751 55.000 5.77 0.00 0.00 1.82
181 188 2.005960 GACCAGCCTCATCGCGTAGT 62.006 60.000 5.77 0.00 0.00 2.73
182 189 1.299468 GACCAGCCTCATCGCGTAG 60.299 63.158 5.77 2.20 0.00 3.51
183 190 2.049767 TGACCAGCCTCATCGCGTA 61.050 57.895 5.77 0.00 0.00 4.42
184 191 3.381983 TGACCAGCCTCATCGCGT 61.382 61.111 5.77 0.00 0.00 6.01
185 192 2.887568 GTGACCAGCCTCATCGCG 60.888 66.667 0.00 0.00 0.00 5.87
186 193 0.745845 ATTGTGACCAGCCTCATCGC 60.746 55.000 0.00 0.00 0.00 4.58
187 194 1.012086 CATTGTGACCAGCCTCATCG 58.988 55.000 0.00 0.00 0.00 3.84
188 195 1.386533 CCATTGTGACCAGCCTCATC 58.613 55.000 0.00 0.00 0.00 2.92
189 196 0.033796 CCCATTGTGACCAGCCTCAT 60.034 55.000 0.00 0.00 0.00 2.90
190 197 1.133181 TCCCATTGTGACCAGCCTCA 61.133 55.000 0.00 0.00 0.00 3.86
191 198 0.038166 TTCCCATTGTGACCAGCCTC 59.962 55.000 0.00 0.00 0.00 4.70
192 199 0.038744 CTTCCCATTGTGACCAGCCT 59.961 55.000 0.00 0.00 0.00 4.58
193 200 0.967380 CCTTCCCATTGTGACCAGCC 60.967 60.000 0.00 0.00 0.00 4.85
194 201 0.038166 TCCTTCCCATTGTGACCAGC 59.962 55.000 0.00 0.00 0.00 4.85
195 202 2.162681 GTTCCTTCCCATTGTGACCAG 58.837 52.381 0.00 0.00 0.00 4.00
196 203 1.780309 AGTTCCTTCCCATTGTGACCA 59.220 47.619 0.00 0.00 0.00 4.02
197 204 2.586648 AGTTCCTTCCCATTGTGACC 57.413 50.000 0.00 0.00 0.00 4.02
198 205 4.010349 CCTAAGTTCCTTCCCATTGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
199 206 3.913799 TCCTAAGTTCCTTCCCATTGTGA 59.086 43.478 0.00 0.00 0.00 3.58
200 207 4.263506 ACTCCTAAGTTCCTTCCCATTGTG 60.264 45.833 0.00 0.00 28.74 3.33
201 208 3.916989 ACTCCTAAGTTCCTTCCCATTGT 59.083 43.478 0.00 0.00 28.74 2.71
202 209 4.576330 ACTCCTAAGTTCCTTCCCATTG 57.424 45.455 0.00 0.00 28.74 2.82
203 210 5.550403 TGTTACTCCTAAGTTCCTTCCCATT 59.450 40.000 0.00 0.00 36.92 3.16
204 211 5.098663 TGTTACTCCTAAGTTCCTTCCCAT 58.901 41.667 0.00 0.00 36.92 4.00
205 212 4.495565 TGTTACTCCTAAGTTCCTTCCCA 58.504 43.478 0.00 0.00 36.92 4.37
206 213 5.189145 TGATGTTACTCCTAAGTTCCTTCCC 59.811 44.000 0.00 0.00 36.92 3.97
207 214 6.107343 GTGATGTTACTCCTAAGTTCCTTCC 58.893 44.000 0.00 0.00 36.92 3.46
208 215 6.590677 GTGTGATGTTACTCCTAAGTTCCTTC 59.409 42.308 0.00 0.00 36.92 3.46
209 216 6.042781 TGTGTGATGTTACTCCTAAGTTCCTT 59.957 38.462 0.00 0.00 36.92 3.36
210 217 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
211 218 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
212 219 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
213 220 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
214 221 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
220 227 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
221 228 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
222 229 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
223 230 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
224 231 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
225 232 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
226 233 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
227 234 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
228 235 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
229 236 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
230 237 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
231 238 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
232 239 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
233 240 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
234 241 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
235 242 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
236 243 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
237 244 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
238 245 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
239 246 5.010516 TGTGCCACATAAGCAAAGTTGTATT 59.989 36.000 0.00 0.00 43.02 1.89
240 247 4.522405 TGTGCCACATAAGCAAAGTTGTAT 59.478 37.500 0.00 0.00 43.02 2.29
241 248 3.885901 TGTGCCACATAAGCAAAGTTGTA 59.114 39.130 0.00 0.00 43.02 2.41
242 249 2.692557 TGTGCCACATAAGCAAAGTTGT 59.307 40.909 0.00 0.00 43.02 3.32
243 250 3.367992 TGTGCCACATAAGCAAAGTTG 57.632 42.857 0.00 0.00 43.02 3.16
244 251 5.920193 ATATGTGCCACATAAGCAAAGTT 57.080 34.783 20.57 0.00 43.50 2.66
245 252 5.920193 AATATGTGCCACATAAGCAAAGT 57.080 34.783 20.57 0.54 43.50 2.66
246 253 8.757789 CATTAAATATGTGCCACATAAGCAAAG 58.242 33.333 20.57 8.50 43.50 2.77
247 254 8.473219 TCATTAAATATGTGCCACATAAGCAAA 58.527 29.630 20.57 12.83 43.50 3.68
248 255 8.005192 TCATTAAATATGTGCCACATAAGCAA 57.995 30.769 20.57 14.07 43.50 3.91
249 256 7.579761 TCATTAAATATGTGCCACATAAGCA 57.420 32.000 20.57 6.59 43.50 3.91
250 257 8.352201 TCTTCATTAAATATGTGCCACATAAGC 58.648 33.333 20.57 0.00 43.50 3.09
251 258 9.888878 CTCTTCATTAAATATGTGCCACATAAG 57.111 33.333 20.57 12.73 43.50 1.73
252 259 9.625747 TCTCTTCATTAAATATGTGCCACATAA 57.374 29.630 20.57 7.37 43.50 1.90
253 260 9.276590 CTCTCTTCATTAAATATGTGCCACATA 57.723 33.333 19.16 19.16 44.29 2.29
254 261 7.994911 TCTCTCTTCATTAAATATGTGCCACAT 59.005 33.333 15.69 15.69 42.35 3.21
255 262 7.337938 TCTCTCTTCATTAAATATGTGCCACA 58.662 34.615 0.00 0.00 0.00 4.17
256 263 7.041508 CCTCTCTCTTCATTAAATATGTGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
257 264 6.994496 CCTCTCTCTTCATTAAATATGTGCCA 59.006 38.462 0.00 0.00 0.00 4.92
258 265 6.995091 ACCTCTCTCTTCATTAAATATGTGCC 59.005 38.462 0.00 0.00 0.00 5.01
259 266 7.519649 GCACCTCTCTCTTCATTAAATATGTGC 60.520 40.741 0.00 0.00 35.67 4.57
260 267 7.714377 AGCACCTCTCTCTTCATTAAATATGTG 59.286 37.037 0.00 0.00 0.00 3.21
261 268 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
262 269 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
263 270 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
264 271 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
265 272 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
266 273 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
267 274 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
268 275 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
269 276 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
270 277 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
271 278 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
272 279 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
273 280 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
274 281 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
275 282 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
276 283 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
277 284 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
278 285 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
279 286 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
280 287 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
281 288 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
282 289 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
283 290 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
292 299 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
294 301 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
295 302 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
296 303 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
297 304 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
298 305 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
299 306 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
300 307 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
301 308 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
302 309 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
303 310 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
304 311 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
305 312 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
306 313 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
307 314 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
308 315 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
309 316 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
310 317 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
311 318 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
312 319 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
313 320 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
314 321 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
315 322 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
316 323 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
317 324 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
318 325 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
319 326 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
320 327 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
321 328 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
322 329 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
323 330 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
324 331 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
343 350 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
344 351 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
345 352 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
346 353 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
347 354 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
348 355 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
349 356 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
350 357 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
351 358 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
352 359 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
353 360 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
354 361 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
355 362 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
356 363 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
357 364 5.717038 TTATGTAGTGTCATGCAACGATG 57.283 39.130 0.00 0.00 0.00 3.84
358 365 6.316140 ACATTTATGTAGTGTCATGCAACGAT 59.684 34.615 0.00 0.00 39.68 3.73
359 366 5.641636 ACATTTATGTAGTGTCATGCAACGA 59.358 36.000 0.00 0.00 39.68 3.85
360 367 5.868257 ACATTTATGTAGTGTCATGCAACG 58.132 37.500 0.00 0.00 39.68 4.10
361 368 6.747280 GGAACATTTATGTAGTGTCATGCAAC 59.253 38.462 0.00 0.00 40.80 4.17
362 369 6.658816 AGGAACATTTATGTAGTGTCATGCAA 59.341 34.615 0.00 0.00 40.80 4.08
363 370 6.179756 AGGAACATTTATGTAGTGTCATGCA 58.820 36.000 0.00 0.00 40.80 3.96
364 371 6.683974 AGGAACATTTATGTAGTGTCATGC 57.316 37.500 0.00 0.00 40.80 4.06
365 372 7.226720 GGGTAGGAACATTTATGTAGTGTCATG 59.773 40.741 0.00 0.00 40.80 3.07
366 373 7.092623 TGGGTAGGAACATTTATGTAGTGTCAT 60.093 37.037 0.00 0.00 40.80 3.06
367 374 6.213802 TGGGTAGGAACATTTATGTAGTGTCA 59.786 38.462 0.00 0.00 40.80 3.58
368 375 6.537660 GTGGGTAGGAACATTTATGTAGTGTC 59.462 42.308 0.00 0.00 40.80 3.67
369 376 6.214819 AGTGGGTAGGAACATTTATGTAGTGT 59.785 38.462 0.00 0.00 40.80 3.55
370 377 6.650120 AGTGGGTAGGAACATTTATGTAGTG 58.350 40.000 0.00 0.00 40.80 2.74
371 378 6.886178 AGTGGGTAGGAACATTTATGTAGT 57.114 37.500 0.00 0.00 40.80 2.73
372 379 8.647796 TCATAGTGGGTAGGAACATTTATGTAG 58.352 37.037 0.00 0.00 40.80 2.74
373 380 8.555896 TCATAGTGGGTAGGAACATTTATGTA 57.444 34.615 0.00 0.00 40.80 2.29
374 381 7.446106 TCATAGTGGGTAGGAACATTTATGT 57.554 36.000 0.00 0.00 44.20 2.29
375 382 8.210946 TCTTCATAGTGGGTAGGAACATTTATG 58.789 37.037 0.00 0.00 28.58 1.90
376 383 8.331931 TCTTCATAGTGGGTAGGAACATTTAT 57.668 34.615 0.00 0.00 28.58 1.40
377 384 7.743116 TCTTCATAGTGGGTAGGAACATTTA 57.257 36.000 0.00 0.00 28.58 1.40
378 385 6.636454 TCTTCATAGTGGGTAGGAACATTT 57.364 37.500 0.00 0.00 28.58 2.32
379 386 6.831664 ATCTTCATAGTGGGTAGGAACATT 57.168 37.500 0.00 0.00 28.58 2.71
380 387 7.076446 ACTATCTTCATAGTGGGTAGGAACAT 58.924 38.462 0.00 0.00 43.21 2.71
381 388 6.441222 ACTATCTTCATAGTGGGTAGGAACA 58.559 40.000 0.00 0.00 43.21 3.18
382 389 6.980416 ACTATCTTCATAGTGGGTAGGAAC 57.020 41.667 0.00 0.00 43.21 3.62
409 416 9.097946 AGTAACTTACACACTTCCCTAAACTAT 57.902 33.333 1.79 0.00 0.00 2.12
410 417 8.482852 AGTAACTTACACACTTCCCTAAACTA 57.517 34.615 1.79 0.00 0.00 2.24
411 418 7.370905 AGTAACTTACACACTTCCCTAAACT 57.629 36.000 1.79 0.00 0.00 2.66
412 419 7.330454 GCTAGTAACTTACACACTTCCCTAAAC 59.670 40.741 1.79 0.00 0.00 2.01
413 420 7.234166 AGCTAGTAACTTACACACTTCCCTAAA 59.766 37.037 1.79 0.00 0.00 1.85
414 421 6.723052 AGCTAGTAACTTACACACTTCCCTAA 59.277 38.462 1.79 0.00 0.00 2.69
415 422 6.251471 AGCTAGTAACTTACACACTTCCCTA 58.749 40.000 1.79 0.00 0.00 3.53
416 423 5.085219 AGCTAGTAACTTACACACTTCCCT 58.915 41.667 1.79 0.00 0.00 4.20
417 424 5.402997 AGCTAGTAACTTACACACTTCCC 57.597 43.478 1.79 0.00 0.00 3.97
418 425 8.033626 ACATAAGCTAGTAACTTACACACTTCC 58.966 37.037 1.79 0.00 32.67 3.46
419 426 8.983307 ACATAAGCTAGTAACTTACACACTTC 57.017 34.615 1.79 0.00 32.67 3.01
420 427 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
421 428 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
422 429 8.983307 AGAACATAAGCTAGTAACTTACACAC 57.017 34.615 1.79 0.00 32.67 3.82
423 430 9.419297 CAAGAACATAAGCTAGTAACTTACACA 57.581 33.333 1.79 0.00 32.67 3.72
424 431 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
425 432 7.548075 GGCAAGAACATAAGCTAGTAACTTACA 59.452 37.037 1.79 0.00 32.67 2.41
426 433 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
427 434 7.046033 GGGCAAGAACATAAGCTAGTAACTTA 58.954 38.462 0.00 0.00 34.29 2.24
428 435 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
429 436 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
430 437 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
431 438 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
432 439 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
433 440 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
434 441 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
435 442 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
436 443 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
437 444 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
438 445 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
439 446 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
440 447 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
441 448 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
442 449 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
443 450 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
444 451 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
445 452 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
446 453 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
447 454 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
448 455 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
449 456 2.036256 AGGCTGGTCACAATGGGC 59.964 61.111 0.00 0.00 0.00 5.36
450 457 0.251297 TTCAGGCTGGTCACAATGGG 60.251 55.000 15.73 0.00 0.00 4.00
451 458 1.171308 CTTCAGGCTGGTCACAATGG 58.829 55.000 15.73 0.00 0.00 3.16
452 459 0.524862 GCTTCAGGCTGGTCACAATG 59.475 55.000 15.73 0.00 38.06 2.82
453 460 0.111061 TGCTTCAGGCTGGTCACAAT 59.889 50.000 15.73 0.00 42.39 2.71
454 461 0.111061 ATGCTTCAGGCTGGTCACAA 59.889 50.000 15.73 0.00 42.39 3.33
455 462 0.111061 AATGCTTCAGGCTGGTCACA 59.889 50.000 15.73 8.65 42.39 3.58
456 463 0.807496 GAATGCTTCAGGCTGGTCAC 59.193 55.000 15.73 2.78 42.39 3.67
457 464 0.401356 TGAATGCTTCAGGCTGGTCA 59.599 50.000 15.73 10.40 42.39 4.02
458 465 0.807496 GTGAATGCTTCAGGCTGGTC 59.193 55.000 15.73 4.70 41.01 4.02
459 466 0.610232 GGTGAATGCTTCAGGCTGGT 60.610 55.000 15.73 0.00 41.01 4.00
460 467 0.609957 TGGTGAATGCTTCAGGCTGG 60.610 55.000 15.73 0.00 41.01 4.85
461 468 0.809385 CTGGTGAATGCTTCAGGCTG 59.191 55.000 8.58 8.58 41.01 4.85
462 469 0.403271 ACTGGTGAATGCTTCAGGCT 59.597 50.000 0.00 0.00 41.01 4.58
463 470 2.113860 TACTGGTGAATGCTTCAGGC 57.886 50.000 0.00 0.00 41.01 4.85
464 471 3.438087 CAGTTACTGGTGAATGCTTCAGG 59.562 47.826 4.14 0.00 41.01 3.86
465 472 3.120060 GCAGTTACTGGTGAATGCTTCAG 60.120 47.826 14.63 0.00 34.43 3.02
523 538 0.532573 CCTGCTGATCGTAGGTGTGT 59.467 55.000 11.56 0.00 40.32 3.72
550 565 3.706373 ACTTGATCACCGCCGGCT 61.706 61.111 26.68 4.40 0.00 5.52
568 583 5.811399 TGATTCATTCGTATGTTTGGGTC 57.189 39.130 1.75 0.00 33.34 4.46
573 588 5.734220 GCAGGCATGATTCATTCGTATGTTT 60.734 40.000 0.62 0.00 33.34 2.83
601 616 2.957871 CGACGAAGATTCATCGCCA 58.042 52.632 10.92 0.00 43.88 5.69
604 619 1.124462 GAGGCGACGAAGATTCATCG 58.876 55.000 9.55 9.55 44.67 3.84
640 702 2.032981 CTTGCTCCCAAGTTGCGTT 58.967 52.632 0.00 0.00 42.76 4.84
660 722 3.114616 CTGCTCGAGGTGGTTGCG 61.115 66.667 15.58 0.00 0.00 4.85
914 995 2.612115 AGCTGCTTGGGGGCTAGT 60.612 61.111 0.00 0.00 34.31 2.57
974 1073 1.822613 CTCTGCTCTACCGCCGGTA 60.823 63.158 16.33 16.33 37.09 4.02
977 1076 3.764810 CTGCTCTGCTCTACCGCCG 62.765 68.421 0.00 0.00 0.00 6.46
978 1077 2.105930 CTGCTCTGCTCTACCGCC 59.894 66.667 0.00 0.00 0.00 6.13
979 1078 2.584694 GCTGCTCTGCTCTACCGC 60.585 66.667 0.00 0.00 0.00 5.68
980 1079 1.518133 GTGCTGCTCTGCTCTACCG 60.518 63.158 0.00 0.00 0.00 4.02
1092 1200 0.898320 ACTCCAGGTCATTGTCCTCG 59.102 55.000 0.00 0.00 32.37 4.63
1101 1209 1.000771 CTCCTCCGACTCCAGGTCA 60.001 63.158 0.00 0.00 44.70 4.02
1371 1479 1.222661 GTACATGAACCCCGGGACC 59.777 63.158 26.32 11.15 0.00 4.46
1533 1641 2.430367 GACACCAGCTTCCCGGTT 59.570 61.111 0.00 0.00 31.41 4.44
1629 1740 3.185594 CGCCGTTTTTCTTGATGTACTCA 59.814 43.478 0.00 0.00 0.00 3.41
1712 1826 3.334054 GGGAGCTCTTGGCCACCT 61.334 66.667 14.64 0.00 43.05 4.00
1732 1846 1.741401 CGTCGATGTGCACCACCAT 60.741 57.895 15.69 0.00 32.73 3.55
2127 2253 2.739943 AGAGATTGGGACGATCACTGA 58.260 47.619 0.00 0.00 0.00 3.41
2197 2336 9.143631 GCACTTGATTCAGCTGTAATTTATTTT 57.856 29.630 14.67 0.00 0.00 1.82
2324 2473 6.389091 ACAAACATTACCAGTACATTGCATG 58.611 36.000 0.00 0.00 0.00 4.06
2325 2474 6.588719 ACAAACATTACCAGTACATTGCAT 57.411 33.333 0.00 0.00 0.00 3.96
2326 2475 7.229707 ACTTACAAACATTACCAGTACATTGCA 59.770 33.333 0.00 0.00 0.00 4.08
2327 2476 7.537306 CACTTACAAACATTACCAGTACATTGC 59.463 37.037 0.00 0.00 0.00 3.56
2328 2477 8.564574 ACACTTACAAACATTACCAGTACATTG 58.435 33.333 0.00 0.00 0.00 2.82
2472 2626 7.361799 GGCGATTGTAAACCAACTCTTTATCTT 60.362 37.037 0.00 0.00 35.44 2.40
2487 2643 3.206964 TGTGTGAAGTGGCGATTGTAAA 58.793 40.909 0.00 0.00 0.00 2.01
2522 2681 9.685276 TTGATTGTATTCTGGATGATGTAAAGT 57.315 29.630 0.00 0.00 0.00 2.66
2524 2683 9.123902 CCTTGATTGTATTCTGGATGATGTAAA 57.876 33.333 0.00 0.00 0.00 2.01
2614 2778 2.867287 TGAAGTTCGTGTTCGTGGTA 57.133 45.000 0.00 0.00 38.33 3.25
2617 2781 2.048498 TCGATGAAGTTCGTGTTCGTG 58.952 47.619 1.31 0.00 40.03 4.35
2661 2825 3.803715 GCTGATAATACCGGTGCAGATGT 60.804 47.826 19.93 0.00 0.00 3.06
2671 2835 2.238942 TGCAGGTGCTGATAATACCG 57.761 50.000 3.18 0.00 42.66 4.02
2677 2841 0.692476 ACCAGTTGCAGGTGCTGATA 59.308 50.000 3.18 0.00 42.66 2.15
2738 2903 2.336945 TAGTCTTGATCGCGAGGGTA 57.663 50.000 16.66 0.00 0.00 3.69
2794 2961 0.675837 ATGCTAGTGTGTGCTGCAGG 60.676 55.000 17.12 0.00 37.07 4.85
2803 2970 6.989759 TGTTAACCACCATATATGCTAGTGTG 59.010 38.462 7.24 9.17 0.00 3.82
2804 2971 7.131907 TGTTAACCACCATATATGCTAGTGT 57.868 36.000 7.24 0.00 0.00 3.55
2860 3029 2.902705 TTGTAGCTTCTTGACCGTGT 57.097 45.000 0.00 0.00 0.00 4.49
2910 3082 3.578688 GGCTTTGGTGTTATGCTTGAAG 58.421 45.455 0.00 0.00 0.00 3.02
2929 3101 3.047877 CCGGGAAGTGAACACGGC 61.048 66.667 0.00 0.00 46.99 5.68
2964 3136 1.445410 GCGTGTGTAGCCGTGATGA 60.445 57.895 0.00 0.00 0.00 2.92
3023 3197 8.221944 AGATGGGAATTTATTAATGTCCGGTTA 58.778 33.333 0.00 0.00 0.00 2.85
3037 3211 4.479158 GGTTATGGGCAGATGGGAATTTA 58.521 43.478 0.00 0.00 0.00 1.40
3070 3245 4.098654 TGCAGGGATTTGAACTTTCGAAAA 59.901 37.500 12.41 0.00 34.45 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.