Multiple sequence alignment - TraesCS3A01G412700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G412700 chr3A 100.000 8359 0 0 1 8359 656104652 656113010 0.000000e+00 15437.0
1 TraesCS3A01G412700 chr3A 92.135 178 13 1 1357 1534 661842067 661841891 5.010000e-62 250.0
2 TraesCS3A01G412700 chr3A 89.677 155 14 2 4283 4435 531452017 531452171 6.620000e-46 196.0
3 TraesCS3A01G412700 chr3A 100.000 30 0 0 4472 4501 142577567 142577596 1.000000e-03 56.5
4 TraesCS3A01G412700 chr3D 92.021 4349 166 70 2 4269 520718282 520722530 0.000000e+00 5941.0
5 TraesCS3A01G412700 chr3D 94.971 3261 124 14 4584 7823 520722819 520726060 0.000000e+00 5077.0
6 TraesCS3A01G412700 chr3D 97.890 237 5 0 4265 4501 520722584 520722820 2.170000e-110 411.0
7 TraesCS3A01G412700 chr3D 88.412 233 21 1 6916 7148 520724939 520725165 8.260000e-70 276.0
8 TraesCS3A01G412700 chr3D 95.745 94 4 0 4380 4473 554058220 554058313 1.450000e-32 152.0
9 TraesCS3A01G412700 chr3D 89.474 114 12 0 4491 4604 531156289 531156176 2.430000e-30 145.0
10 TraesCS3A01G412700 chr3B 91.788 3227 169 33 4599 7788 686345546 686348713 0.000000e+00 4403.0
11 TraesCS3A01G412700 chr3B 86.895 2602 142 84 2 2520 686341242 686343727 0.000000e+00 2732.0
12 TraesCS3A01G412700 chr3B 93.951 1025 36 9 2550 3560 686343718 686344730 0.000000e+00 1526.0
13 TraesCS3A01G412700 chr3B 93.472 720 42 2 3550 4268 686344763 686345478 0.000000e+00 1064.0
14 TraesCS3A01G412700 chr3B 95.604 91 4 0 4496 4586 782122867 782122777 6.760000e-31 147.0
15 TraesCS3A01G412700 chr3B 90.385 104 8 2 4396 4499 555504550 555504651 1.460000e-27 135.0
16 TraesCS3A01G412700 chr2A 98.507 536 8 0 7824 8359 6099958 6099423 0.000000e+00 946.0
17 TraesCS3A01G412700 chr2A 98.321 536 9 0 7824 8359 6147646 6147111 0.000000e+00 941.0
18 TraesCS3A01G412700 chr2A 97.588 539 13 0 7821 8359 677488258 677488796 0.000000e+00 924.0
19 TraesCS3A01G412700 chr2A 97.412 541 13 1 7820 8359 379119761 379120301 0.000000e+00 920.0
20 TraesCS3A01G412700 chr2A 90.977 133 11 1 4482 4614 747681021 747680890 2.400000e-40 178.0
21 TraesCS3A01G412700 chr2A 95.000 40 2 0 4571 4610 11996246 11996285 7.000000e-06 63.9
22 TraesCS3A01G412700 chr7A 97.955 538 10 1 7823 8359 6172151 6171614 0.000000e+00 931.0
23 TraesCS3A01G412700 chr7A 97.770 538 11 1 7823 8359 6241800 6241263 0.000000e+00 926.0
24 TraesCS3A01G412700 chr7A 97.053 543 14 2 7819 8359 303919305 303919847 0.000000e+00 913.0
25 TraesCS3A01G412700 chr7A 96.629 89 3 0 4498 4586 1405387 1405475 1.880000e-31 148.0
26 TraesCS3A01G412700 chr7A 95.181 83 4 0 1670 1752 49629861 49629943 1.890000e-26 132.0
27 TraesCS3A01G412700 chr7A 89.091 55 5 1 4270 4324 15776208 15776155 5.410000e-07 67.6
28 TraesCS3A01G412700 chr7A 89.091 55 5 1 4270 4324 15804333 15804280 5.410000e-07 67.6
29 TraesCS3A01G412700 chrUn 97.584 538 12 1 7823 8359 277522196 277522733 0.000000e+00 920.0
30 TraesCS3A01G412700 chrUn 96.552 58 2 0 1673 1730 433056974 433056917 6.910000e-16 97.1
31 TraesCS3A01G412700 chr1A 97.393 537 14 0 7823 8359 567982632 567983168 0.000000e+00 915.0
32 TraesCS3A01G412700 chr5B 87.954 606 53 9 1153 1752 68814394 68814985 0.000000e+00 697.0
33 TraesCS3A01G412700 chr5B 81.538 195 22 10 4283 4468 422502832 422503021 1.880000e-31 148.0
34 TraesCS3A01G412700 chr2B 91.281 367 27 3 1389 1752 461896036 461895672 5.830000e-136 496.0
35 TraesCS3A01G412700 chr2B 92.079 101 7 1 4489 4589 142245680 142245581 3.150000e-29 141.0
36 TraesCS3A01G412700 chr2B 87.692 130 4 3 1224 1350 767953491 767953371 3.150000e-29 141.0
37 TraesCS3A01G412700 chr2B 90.566 106 8 1 4297 4400 13089648 13089543 1.130000e-28 139.0
38 TraesCS3A01G412700 chr2B 89.908 109 7 3 4297 4402 106758108 106758001 4.070000e-28 137.0
39 TraesCS3A01G412700 chr2B 91.304 46 3 1 4272 4317 224650730 224650774 2.520000e-05 62.1
40 TraesCS3A01G412700 chr7D 91.584 202 5 6 1152 1350 549768596 549768788 1.380000e-67 268.0
41 TraesCS3A01G412700 chr6A 87.958 191 19 2 4285 4473 75913762 75913574 1.090000e-53 222.0
42 TraesCS3A01G412700 chr4D 90.854 164 10 2 1152 1312 463693104 463693265 1.830000e-51 215.0
43 TraesCS3A01G412700 chr4D 92.683 123 9 0 4482 4604 9296570 9296448 2.400000e-40 178.0
44 TraesCS3A01G412700 chr4D 92.079 101 6 1 4305 4403 110081031 110080931 3.150000e-29 141.0
45 TraesCS3A01G412700 chr1B 91.791 134 11 0 4474 4607 297119727 297119594 3.980000e-43 187.0
46 TraesCS3A01G412700 chr6D 89.610 154 4 5 1200 1350 469343766 469343622 1.430000e-42 185.0
47 TraesCS3A01G412700 chr6D 89.091 110 8 1 4396 4501 34338191 34338082 5.260000e-27 134.0
48 TraesCS3A01G412700 chr7B 92.079 101 8 0 4495 4595 618451957 618452057 8.750000e-30 143.0
49 TraesCS3A01G412700 chr7B 90.566 106 7 2 4304 4407 588874916 588875020 4.070000e-28 137.0
50 TraesCS3A01G412700 chr7B 89.091 110 10 2 4500 4609 531736532 531736425 1.460000e-27 135.0
51 TraesCS3A01G412700 chr4A 93.684 95 6 0 4379 4473 667379667 667379573 8.750000e-30 143.0
52 TraesCS3A01G412700 chr4A 85.606 132 15 3 4373 4501 692358189 692358319 1.460000e-27 135.0
53 TraesCS3A01G412700 chr4B 80.612 196 26 10 4286 4473 466965714 466965905 3.150000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G412700 chr3A 656104652 656113010 8358 False 15437.00 15437 100.0000 1 8359 1 chr3A.!!$F3 8358
1 TraesCS3A01G412700 chr3D 520718282 520726060 7778 False 2926.25 5941 93.3235 2 7823 4 chr3D.!!$F2 7821
2 TraesCS3A01G412700 chr3B 686341242 686348713 7471 False 2431.25 4403 91.5265 2 7788 4 chr3B.!!$F2 7786
3 TraesCS3A01G412700 chr2A 6099423 6099958 535 True 946.00 946 98.5070 7824 8359 1 chr2A.!!$R1 535
4 TraesCS3A01G412700 chr2A 6147111 6147646 535 True 941.00 941 98.3210 7824 8359 1 chr2A.!!$R2 535
5 TraesCS3A01G412700 chr2A 677488258 677488796 538 False 924.00 924 97.5880 7821 8359 1 chr2A.!!$F3 538
6 TraesCS3A01G412700 chr2A 379119761 379120301 540 False 920.00 920 97.4120 7820 8359 1 chr2A.!!$F2 539
7 TraesCS3A01G412700 chr7A 6171614 6172151 537 True 931.00 931 97.9550 7823 8359 1 chr7A.!!$R1 536
8 TraesCS3A01G412700 chr7A 6241263 6241800 537 True 926.00 926 97.7700 7823 8359 1 chr7A.!!$R2 536
9 TraesCS3A01G412700 chr7A 303919305 303919847 542 False 913.00 913 97.0530 7819 8359 1 chr7A.!!$F3 540
10 TraesCS3A01G412700 chrUn 277522196 277522733 537 False 920.00 920 97.5840 7823 8359 1 chrUn.!!$F1 536
11 TraesCS3A01G412700 chr1A 567982632 567983168 536 False 915.00 915 97.3930 7823 8359 1 chr1A.!!$F1 536
12 TraesCS3A01G412700 chr5B 68814394 68814985 591 False 697.00 697 87.9540 1153 1752 1 chr5B.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 921 0.165944 CAGGCTTTACTTTGGACGCG 59.834 55.000 3.53 3.53 0.00 6.01 F
1905 2058 0.594796 GCCGTTTGTTGCTTCCTGTG 60.595 55.000 0.00 0.00 0.00 3.66 F
1954 2107 1.302431 CTGCATGGTGGTTCCGTCA 60.302 57.895 0.00 0.00 39.52 4.35 F
2235 2389 1.390123 CTCGCACCAGTTAACATCACG 59.610 52.381 8.61 5.17 0.00 4.35 F
3764 3981 2.158623 TGATCAGCTTGTTGGTTCTGGT 60.159 45.455 0.00 0.00 0.00 4.00 F
3779 3996 1.229625 TGGTGGGAGTCATCTGGCT 60.230 57.895 0.00 0.00 0.00 4.75 F
4172 4389 1.331756 CTTGATCATGCTACGTTGCCC 59.668 52.381 19.09 4.39 0.00 5.36 F
5801 6099 0.250295 AAGCAAGGTCGTTAGCTGCA 60.250 50.000 1.02 0.00 37.41 4.41 F
6041 6339 0.250467 TTGGCTGCAGTTCTCCTGAC 60.250 55.000 16.64 0.00 44.49 3.51 F
6221 6519 0.459237 CTAGTGGAGTGCAAGCCTCG 60.459 60.000 7.53 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 2285 0.257328 TCTGCACCAACCTGTTCCAA 59.743 50.000 0.00 0.00 0.00 3.53 R
3330 3505 0.951558 GAACTGCGTGGTTCCATTGT 59.048 50.000 10.17 0.00 39.50 2.71 R
3764 3981 1.141657 GCATTAGCCAGATGACTCCCA 59.858 52.381 0.00 0.00 33.58 4.37 R
3779 3996 2.618816 CCCTTCACTTCCAGCTGCATTA 60.619 50.000 8.66 0.00 0.00 1.90 R
4869 5145 1.340308 TGACAGGTCCAGCATCATTGG 60.340 52.381 0.00 0.00 37.04 3.16 R
5526 5814 2.034558 AGGATGCCACAAGTTCAAAACG 59.965 45.455 0.00 0.00 36.23 3.60 R
6058 6356 0.323451 ACTCCCCTCGCAATTTTCCC 60.323 55.000 0.00 0.00 0.00 3.97 R
7083 7384 0.402121 AACTTCTTCCCACAGCCCTC 59.598 55.000 0.00 0.00 0.00 4.30 R
7223 7524 1.520787 GTCGCCGGTATGAACCCTG 60.521 63.158 1.90 0.00 43.54 4.45 R
7816 8138 1.665916 CGCACAGGGTGACTCACAG 60.666 63.158 11.34 3.21 35.86 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 131 4.436998 CAGTCCCAGGCGACGACC 62.437 72.222 0.00 0.00 37.85 4.79
132 136 4.135153 CCAGGCGACGACCTCCTG 62.135 72.222 11.11 11.11 45.24 3.86
134 138 2.282958 AGGCGACGACCTCCTGAA 60.283 61.111 0.00 0.00 33.62 3.02
136 140 2.637383 GGCGACGACCTCCTGAAGT 61.637 63.158 0.00 0.00 0.00 3.01
137 141 1.153997 GCGACGACCTCCTGAAGTC 60.154 63.158 0.00 0.00 0.00 3.01
138 142 1.587933 GCGACGACCTCCTGAAGTCT 61.588 60.000 0.00 0.00 0.00 3.24
139 143 0.882474 CGACGACCTCCTGAAGTCTT 59.118 55.000 0.00 0.00 0.00 3.01
140 144 1.269998 CGACGACCTCCTGAAGTCTTT 59.730 52.381 0.00 0.00 0.00 2.52
141 145 2.678324 GACGACCTCCTGAAGTCTTTG 58.322 52.381 0.00 0.00 0.00 2.77
142 146 2.296471 GACGACCTCCTGAAGTCTTTGA 59.704 50.000 0.00 0.00 0.00 2.69
143 147 2.900546 ACGACCTCCTGAAGTCTTTGAT 59.099 45.455 0.00 0.00 0.00 2.57
144 148 3.056465 ACGACCTCCTGAAGTCTTTGATC 60.056 47.826 0.00 0.00 0.00 2.92
145 149 3.677424 CGACCTCCTGAAGTCTTTGATCC 60.677 52.174 0.00 0.00 0.00 3.36
146 150 3.251484 ACCTCCTGAAGTCTTTGATCCA 58.749 45.455 0.00 0.00 0.00 3.41
147 151 3.848975 ACCTCCTGAAGTCTTTGATCCAT 59.151 43.478 0.00 0.00 0.00 3.41
148 152 4.080638 ACCTCCTGAAGTCTTTGATCCATC 60.081 45.833 0.00 0.00 0.00 3.51
149 153 4.450053 CTCCTGAAGTCTTTGATCCATCC 58.550 47.826 0.00 0.00 0.00 3.51
196 210 4.730487 AGCATCGCTGGCTTTCTT 57.270 50.000 0.00 0.00 38.81 2.52
202 216 2.563427 GCTGGCTTTCTTCACGCC 59.437 61.111 0.00 0.00 44.02 5.68
206 220 1.600916 GGCTTTCTTCACGCCTGGT 60.601 57.895 0.00 0.00 40.62 4.00
216 230 0.934901 CACGCCTGGTATCGTCATCG 60.935 60.000 0.00 0.00 36.73 3.84
232 246 1.069204 CATCGATCATCCCACGGAGTT 59.931 52.381 0.00 0.00 41.61 3.01
244 258 0.249322 ACGGAGTTTGACAGGTGACG 60.249 55.000 0.00 0.00 37.78 4.35
252 266 1.933021 TGACAGGTGACGGAAGGTAT 58.067 50.000 0.00 0.00 0.00 2.73
253 267 1.548719 TGACAGGTGACGGAAGGTATG 59.451 52.381 0.00 0.00 0.00 2.39
254 268 0.902531 ACAGGTGACGGAAGGTATGG 59.097 55.000 0.00 0.00 0.00 2.74
255 269 0.902531 CAGGTGACGGAAGGTATGGT 59.097 55.000 0.00 0.00 0.00 3.55
257 271 2.100916 CAGGTGACGGAAGGTATGGTAG 59.899 54.545 0.00 0.00 0.00 3.18
286 311 1.152735 CCTAGGCAGGCGAGTAGGA 60.153 63.158 0.00 0.00 34.99 2.94
287 312 1.175983 CCTAGGCAGGCGAGTAGGAG 61.176 65.000 0.00 0.00 34.99 3.69
292 317 3.357082 AGGCGAGTAGGAGGGGGT 61.357 66.667 0.00 0.00 0.00 4.95
293 318 2.838693 GGCGAGTAGGAGGGGGTC 60.839 72.222 0.00 0.00 0.00 4.46
294 319 2.279408 GCGAGTAGGAGGGGGTCT 59.721 66.667 0.00 0.00 0.00 3.85
295 320 1.535685 GCGAGTAGGAGGGGGTCTA 59.464 63.158 0.00 0.00 0.00 2.59
296 321 0.537828 GCGAGTAGGAGGGGGTCTAG 60.538 65.000 0.00 0.00 0.00 2.43
297 322 0.845337 CGAGTAGGAGGGGGTCTAGT 59.155 60.000 0.00 0.00 0.00 2.57
298 323 1.202794 CGAGTAGGAGGGGGTCTAGTC 60.203 61.905 0.00 0.00 34.34 2.59
299 324 2.137702 GAGTAGGAGGGGGTCTAGTCT 58.862 57.143 0.00 0.00 34.67 3.24
300 325 3.325605 GAGTAGGAGGGGGTCTAGTCTA 58.674 54.545 0.00 0.00 34.67 2.59
301 326 3.055328 AGTAGGAGGGGGTCTAGTCTAC 58.945 54.545 0.00 0.00 0.00 2.59
302 327 1.233857 AGGAGGGGGTCTAGTCTACC 58.766 60.000 0.00 0.00 36.19 3.18
310 335 2.352457 CTAGTCTACCTGCGCGCG 60.352 66.667 28.44 28.44 0.00 6.86
317 342 2.274834 CTACCTGCGCGCGTGTAAAC 62.275 60.000 32.35 14.02 0.00 2.01
323 348 1.888958 GCGCGCGTGTAAACCTGTAA 61.889 55.000 32.35 0.00 0.00 2.41
324 349 0.179268 CGCGCGTGTAAACCTGTAAC 60.179 55.000 24.19 0.00 0.00 2.50
325 350 1.142474 GCGCGTGTAAACCTGTAACT 58.858 50.000 8.43 0.00 0.00 2.24
326 351 1.528161 GCGCGTGTAAACCTGTAACTT 59.472 47.619 8.43 0.00 0.00 2.66
327 352 2.730928 GCGCGTGTAAACCTGTAACTTA 59.269 45.455 8.43 0.00 0.00 2.24
330 355 5.062058 GCGCGTGTAAACCTGTAACTTATTA 59.938 40.000 8.43 0.00 0.00 0.98
360 403 5.009710 TGTGGTAGATCTTGCTTATAGTCCG 59.990 44.000 0.00 0.00 0.00 4.79
361 404 4.523173 TGGTAGATCTTGCTTATAGTCCGG 59.477 45.833 0.00 0.00 0.00 5.14
362 405 4.082136 GGTAGATCTTGCTTATAGTCCGGG 60.082 50.000 0.00 0.00 0.00 5.73
363 406 2.900546 AGATCTTGCTTATAGTCCGGGG 59.099 50.000 0.00 0.00 0.00 5.73
364 407 0.756903 TCTTGCTTATAGTCCGGGGC 59.243 55.000 0.00 0.00 0.00 5.80
365 408 0.250338 CTTGCTTATAGTCCGGGGCC 60.250 60.000 0.00 0.00 0.00 5.80
366 409 2.035237 TTGCTTATAGTCCGGGGCCG 62.035 60.000 0.00 0.00 39.44 6.13
367 410 2.205152 GCTTATAGTCCGGGGCCGA 61.205 63.158 0.00 0.00 42.83 5.54
368 411 1.965219 CTTATAGTCCGGGGCCGAG 59.035 63.158 0.00 0.00 42.83 4.63
369 412 1.532316 TTATAGTCCGGGGCCGAGG 60.532 63.158 0.00 10.10 42.83 4.63
370 413 2.010412 TTATAGTCCGGGGCCGAGGA 62.010 60.000 14.41 14.41 42.83 3.71
388 431 3.408634 AGGACCCACATTTTGTTCGTAG 58.591 45.455 0.00 0.00 0.00 3.51
394 437 5.768164 ACCCACATTTTGTTCGTAGAAGAAT 59.232 36.000 0.00 0.00 45.90 2.40
439 486 2.882137 TCCGTGTCAATTTCCAAGTTCC 59.118 45.455 0.00 0.00 0.00 3.62
440 487 2.621055 CCGTGTCAATTTCCAAGTTCCA 59.379 45.455 0.00 0.00 0.00 3.53
441 488 3.067461 CCGTGTCAATTTCCAAGTTCCAA 59.933 43.478 0.00 0.00 0.00 3.53
442 489 4.041723 CGTGTCAATTTCCAAGTTCCAAC 58.958 43.478 0.00 0.00 0.00 3.77
443 490 4.041723 GTGTCAATTTCCAAGTTCCAACG 58.958 43.478 0.00 0.00 0.00 4.10
444 491 3.067461 TGTCAATTTCCAAGTTCCAACGG 59.933 43.478 0.00 0.00 0.00 4.44
445 492 3.067601 GTCAATTTCCAAGTTCCAACGGT 59.932 43.478 0.00 0.00 0.00 4.83
446 493 4.276431 GTCAATTTCCAAGTTCCAACGGTA 59.724 41.667 0.00 0.00 0.00 4.02
447 494 4.276431 TCAATTTCCAAGTTCCAACGGTAC 59.724 41.667 0.00 0.00 0.00 3.34
448 495 2.259266 TTCCAAGTTCCAACGGTACC 57.741 50.000 0.16 0.16 0.00 3.34
449 496 1.129917 TCCAAGTTCCAACGGTACCA 58.870 50.000 13.54 0.00 0.00 3.25
450 497 1.700739 TCCAAGTTCCAACGGTACCAT 59.299 47.619 13.54 0.00 0.00 3.55
451 498 2.106857 TCCAAGTTCCAACGGTACCATT 59.893 45.455 13.54 0.00 0.00 3.16
452 499 2.888414 CCAAGTTCCAACGGTACCATTT 59.112 45.455 13.54 0.80 0.00 2.32
509 556 1.388547 ACTGAAAAGAAACTGGCGCA 58.611 45.000 10.83 0.00 0.00 6.09
517 564 2.472816 AGAAACTGGCGCATTTGTTTG 58.527 42.857 10.83 0.00 33.49 2.93
521 568 2.030262 GGCGCATTTGTTTGGCCA 59.970 55.556 10.83 0.00 43.23 5.36
545 592 2.418368 TGGCAAGGCATCTTCGTTAT 57.582 45.000 0.00 0.00 0.00 1.89
546 593 2.722094 TGGCAAGGCATCTTCGTTATT 58.278 42.857 0.00 0.00 0.00 1.40
547 594 3.879998 TGGCAAGGCATCTTCGTTATTA 58.120 40.909 0.00 0.00 0.00 0.98
632 681 3.611113 CCGTTACGTATTTCTGTGACTGG 59.389 47.826 3.52 0.00 0.00 4.00
636 685 2.233922 ACGTATTTCTGTGACTGGGAGG 59.766 50.000 0.00 0.00 0.00 4.30
641 690 0.545071 TCTGTGACTGGGAGGATGCA 60.545 55.000 0.00 0.00 0.00 3.96
690 745 2.950172 GCGAGAAAGAAACCGCGCA 61.950 57.895 8.75 0.00 43.45 6.09
692 747 1.154654 GAGAAAGAAACCGCGCACG 60.155 57.895 8.75 0.00 39.67 5.34
693 748 1.828331 GAGAAAGAAACCGCGCACGT 61.828 55.000 8.75 0.00 37.70 4.49
732 793 4.673298 CACCGGCGCACAGTGGTA 62.673 66.667 10.83 0.00 32.29 3.25
733 794 3.931247 ACCGGCGCACAGTGGTAA 61.931 61.111 10.83 0.00 31.60 2.85
734 795 3.118454 CCGGCGCACAGTGGTAAG 61.118 66.667 10.83 0.00 0.00 2.34
736 797 3.431725 GGCGCACAGTGGTAAGCC 61.432 66.667 10.83 0.00 40.12 4.35
737 798 3.788766 GCGCACAGTGGTAAGCCG 61.789 66.667 0.30 0.00 37.67 5.52
738 799 3.118454 CGCACAGTGGTAAGCCGG 61.118 66.667 1.84 0.00 37.67 6.13
739 800 2.032071 GCACAGTGGTAAGCCGGT 59.968 61.111 1.90 0.00 37.67 5.28
740 801 1.294138 GCACAGTGGTAAGCCGGTA 59.706 57.895 1.90 0.00 37.67 4.02
741 802 0.320946 GCACAGTGGTAAGCCGGTAA 60.321 55.000 1.90 0.00 37.67 2.85
742 803 1.435577 CACAGTGGTAAGCCGGTAAC 58.564 55.000 1.90 0.00 37.67 2.50
788 851 0.389166 CCAAGACTCGAGTCCACAGC 60.389 60.000 35.83 15.82 45.85 4.40
789 852 0.389166 CAAGACTCGAGTCCACAGCC 60.389 60.000 35.83 15.11 45.85 4.85
790 853 0.827925 AAGACTCGAGTCCACAGCCA 60.828 55.000 35.83 0.00 45.85 4.75
791 854 1.080434 GACTCGAGTCCACAGCCAC 60.080 63.158 31.24 6.83 39.07 5.01
792 855 2.126307 CTCGAGTCCACAGCCACG 60.126 66.667 3.62 0.00 0.00 4.94
793 856 2.596338 TCGAGTCCACAGCCACGA 60.596 61.111 0.00 0.00 0.00 4.35
794 857 2.430921 CGAGTCCACAGCCACGAC 60.431 66.667 0.00 0.00 0.00 4.34
795 858 2.430921 GAGTCCACAGCCACGACG 60.431 66.667 0.00 0.00 0.00 5.12
796 859 2.910479 AGTCCACAGCCACGACGA 60.910 61.111 0.00 0.00 0.00 4.20
797 860 2.028484 GTCCACAGCCACGACGAA 59.972 61.111 0.00 0.00 0.00 3.85
798 861 2.028484 TCCACAGCCACGACGAAC 59.972 61.111 0.00 0.00 0.00 3.95
799 862 3.041940 CCACAGCCACGACGAACC 61.042 66.667 0.00 0.00 0.00 3.62
800 863 2.279851 CACAGCCACGACGAACCA 60.280 61.111 0.00 0.00 0.00 3.67
801 864 1.885388 CACAGCCACGACGAACCAA 60.885 57.895 0.00 0.00 0.00 3.67
802 865 1.885850 ACAGCCACGACGAACCAAC 60.886 57.895 0.00 0.00 0.00 3.77
803 866 2.280592 AGCCACGACGAACCAACC 60.281 61.111 0.00 0.00 0.00 3.77
839 915 1.797537 GCGCGCAGGCTTTACTTTG 60.798 57.895 29.10 0.00 36.88 2.77
845 921 0.165944 CAGGCTTTACTTTGGACGCG 59.834 55.000 3.53 3.53 0.00 6.01
849 927 0.953960 CTTTACTTTGGACGCGCCCT 60.954 55.000 14.09 0.00 34.97 5.19
882 960 2.498726 CTTCCTCCTCTGCGCTCC 59.501 66.667 9.73 0.00 0.00 4.70
883 961 2.283894 TTCCTCCTCTGCGCTCCA 60.284 61.111 9.73 0.00 0.00 3.86
1167 1280 2.743752 CGGCATCTGCAAGGTCGTG 61.744 63.158 4.33 0.00 44.36 4.35
1668 1811 4.214383 CTGCGGTTCATGCGCGAG 62.214 66.667 12.10 0.00 34.24 5.03
1671 1814 3.554692 CGGTTCATGCGCGAGGAC 61.555 66.667 12.10 2.94 0.00 3.85
1897 2050 1.282875 GAGGACAGCCGTTTGTTGC 59.717 57.895 0.00 0.00 39.96 4.17
1905 2058 0.594796 GCCGTTTGTTGCTTCCTGTG 60.595 55.000 0.00 0.00 0.00 3.66
1942 2095 1.732809 CTCTGTTGCTCTGACTGCATG 59.267 52.381 0.00 0.00 40.34 4.06
1954 2107 1.302431 CTGCATGGTGGTTCCGTCA 60.302 57.895 0.00 0.00 39.52 4.35
2063 2216 3.071206 GGTGCTGCTCTCTCCCGA 61.071 66.667 0.00 0.00 0.00 5.14
2082 2236 5.030295 CCCGATTTTGAACGATTTGATCTG 58.970 41.667 0.00 0.00 0.00 2.90
2090 2244 6.753897 TGAACGATTTGATCTGATGATACG 57.246 37.500 0.00 0.00 32.19 3.06
2091 2245 6.273071 TGAACGATTTGATCTGATGATACGT 58.727 36.000 0.00 0.00 32.19 3.57
2092 2246 6.198966 TGAACGATTTGATCTGATGATACGTG 59.801 38.462 0.00 0.00 32.19 4.49
2093 2247 5.592054 ACGATTTGATCTGATGATACGTGT 58.408 37.500 0.00 0.00 32.19 4.49
2131 2285 2.036256 GGGCCTGGTTCTGTGCAT 59.964 61.111 0.84 0.00 0.00 3.96
2235 2389 1.390123 CTCGCACCAGTTAACATCACG 59.610 52.381 8.61 5.17 0.00 4.35
2242 2396 5.768317 CACCAGTTAACATCACGGAAAATT 58.232 37.500 8.61 0.00 0.00 1.82
2471 2631 4.586421 TCGTCAATTCATCTCATCTAGGCT 59.414 41.667 0.00 0.00 0.00 4.58
2505 2665 4.746729 TGCAAATGCAGGATGTGTATTTC 58.253 39.130 3.51 0.00 45.33 2.17
2520 2680 7.889589 TGTGTATTTCTAGTGAACACATGAG 57.110 36.000 14.58 0.00 34.18 2.90
2523 2683 4.974645 TTTCTAGTGAACACATGAGGGT 57.025 40.909 0.00 0.00 31.02 4.34
2527 2687 5.084519 TCTAGTGAACACATGAGGGTACTT 58.915 41.667 0.00 0.00 0.00 2.24
2535 2695 2.496470 ACATGAGGGTACTTCGTTCCTC 59.504 50.000 0.00 6.64 44.39 3.71
2537 2697 3.726557 TGAGGGTACTTCGTTCCTCTA 57.273 47.619 12.88 0.59 44.43 2.43
2562 2722 4.751767 TGCCATTGGAAAACTGAACTTT 57.248 36.364 6.95 0.00 0.00 2.66
2572 2732 6.134061 GGAAAACTGAACTTTAGCTGTTACG 58.866 40.000 0.00 0.00 0.00 3.18
2873 3035 5.590259 GCTTCCTGCCTCAATACAGAAAATA 59.410 40.000 0.00 0.00 35.90 1.40
2874 3036 6.264067 GCTTCCTGCCTCAATACAGAAAATAT 59.736 38.462 0.00 0.00 35.90 1.28
2896 3058 8.691661 ATATGCCGTTCTTATAATTCCTTGTT 57.308 30.769 0.00 0.00 0.00 2.83
3004 3166 4.876701 TGGTTCTGTGACCAGTGC 57.123 55.556 2.36 0.00 44.53 4.40
3090 3252 5.811796 TTGTGTGTCTTAAAGTAGCCCTA 57.188 39.130 0.00 0.00 0.00 3.53
3211 3386 9.273016 CTGGGAATTTTGTTCACGTATATATCT 57.727 33.333 0.00 0.00 0.00 1.98
3272 3447 7.408839 GCGCAATGCTTTTTGTATATTTTTG 57.591 32.000 0.30 0.00 41.73 2.44
3595 3812 2.957402 AATGCAGAAGGTGACAAGGA 57.043 45.000 0.00 0.00 0.00 3.36
3764 3981 2.158623 TGATCAGCTTGTTGGTTCTGGT 60.159 45.455 0.00 0.00 0.00 4.00
3779 3996 1.229625 TGGTGGGAGTCATCTGGCT 60.230 57.895 0.00 0.00 0.00 4.75
3869 4086 6.373779 AGCATCAAGTTTTTATGTTGACTCG 58.626 36.000 0.00 0.00 33.16 4.18
4011 4228 6.234177 ACTAGACCATTTGGACTCTCAAAAG 58.766 40.000 3.01 0.00 40.51 2.27
4172 4389 1.331756 CTTGATCATGCTACGTTGCCC 59.668 52.381 19.09 4.39 0.00 5.36
4239 4456 7.381408 CAGAATTACAGGATGCATTGCTTATTG 59.619 37.037 10.49 7.94 42.53 1.90
4280 4556 8.114290 CACTTGATAAATTTGATTGCTCATTGC 58.886 33.333 0.00 0.00 43.25 3.56
4317 4593 3.959449 GTTCCTAAATACTCCCTCCGTCT 59.041 47.826 0.00 0.00 0.00 4.18
4375 4651 6.759827 GGACTGAAGTTAGTACAAAGTTGACA 59.240 38.462 0.00 0.00 31.57 3.58
4447 4723 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
4502 4778 9.482175 AGTGGAATCTCTACAAAGACTTATACT 57.518 33.333 0.00 0.00 29.47 2.12
4503 4779 9.738832 GTGGAATCTCTACAAAGACTTATACTC 57.261 37.037 0.00 0.00 0.00 2.59
4504 4780 8.915036 TGGAATCTCTACAAAGACTTATACTCC 58.085 37.037 0.00 0.00 0.00 3.85
4505 4781 8.361889 GGAATCTCTACAAAGACTTATACTCCC 58.638 40.741 0.00 0.00 0.00 4.30
4506 4782 9.138596 GAATCTCTACAAAGACTTATACTCCCT 57.861 37.037 0.00 0.00 0.00 4.20
4507 4783 8.700439 ATCTCTACAAAGACTTATACTCCCTC 57.300 38.462 0.00 0.00 0.00 4.30
4508 4784 7.874252 TCTCTACAAAGACTTATACTCCCTCT 58.126 38.462 0.00 0.00 0.00 3.69
4509 4785 7.776030 TCTCTACAAAGACTTATACTCCCTCTG 59.224 40.741 0.00 0.00 0.00 3.35
4510 4786 7.411808 TCTACAAAGACTTATACTCCCTCTGT 58.588 38.462 0.00 0.00 0.00 3.41
4511 4787 6.936968 ACAAAGACTTATACTCCCTCTGTT 57.063 37.500 0.00 0.00 0.00 3.16
4512 4788 6.937392 ACAAAGACTTATACTCCCTCTGTTC 58.063 40.000 0.00 0.00 0.00 3.18
4513 4789 6.726764 ACAAAGACTTATACTCCCTCTGTTCT 59.273 38.462 0.00 0.00 0.00 3.01
4514 4790 7.894364 ACAAAGACTTATACTCCCTCTGTTCTA 59.106 37.037 0.00 0.00 0.00 2.10
4515 4791 8.750298 CAAAGACTTATACTCCCTCTGTTCTAA 58.250 37.037 0.00 0.00 0.00 2.10
4516 4792 8.896722 AAGACTTATACTCCCTCTGTTCTAAA 57.103 34.615 0.00 0.00 0.00 1.85
4517 4793 8.896722 AGACTTATACTCCCTCTGTTCTAAAA 57.103 34.615 0.00 0.00 0.00 1.52
4518 4794 9.495382 AGACTTATACTCCCTCTGTTCTAAAAT 57.505 33.333 0.00 0.00 0.00 1.82
4524 4800 7.979786 ACTCCCTCTGTTCTAAAATAGATGA 57.020 36.000 0.00 0.00 32.88 2.92
4525 4801 7.787028 ACTCCCTCTGTTCTAAAATAGATGAC 58.213 38.462 0.00 0.00 32.88 3.06
4526 4802 7.125792 TCCCTCTGTTCTAAAATAGATGACC 57.874 40.000 0.00 0.00 32.88 4.02
4527 4803 6.099845 TCCCTCTGTTCTAAAATAGATGACCC 59.900 42.308 0.00 0.00 32.88 4.46
4528 4804 6.126768 CCCTCTGTTCTAAAATAGATGACCCA 60.127 42.308 0.00 0.00 32.88 4.51
4529 4805 7.338710 CCTCTGTTCTAAAATAGATGACCCAA 58.661 38.462 0.00 0.00 32.88 4.12
4530 4806 7.281100 CCTCTGTTCTAAAATAGATGACCCAAC 59.719 40.741 0.00 0.00 32.88 3.77
4531 4807 7.918076 TCTGTTCTAAAATAGATGACCCAACT 58.082 34.615 0.00 0.00 34.22 3.16
4532 4808 8.383175 TCTGTTCTAAAATAGATGACCCAACTT 58.617 33.333 0.00 0.00 34.22 2.66
4533 4809 8.934023 TGTTCTAAAATAGATGACCCAACTTT 57.066 30.769 0.00 0.00 34.22 2.66
4534 4810 8.792633 TGTTCTAAAATAGATGACCCAACTTTG 58.207 33.333 0.00 0.00 34.22 2.77
4535 4811 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
4537 4813 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
4538 4814 9.449719 CTAAAATAGATGACCCAACTTTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
4540 4816 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4541 4817 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
4542 4818 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
4543 4819 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
4545 4821 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
4546 4822 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
4547 4823 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
4548 4824 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
4549 4825 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
4571 4847 9.751542 AGTATAAAGTTGAGTCATCTATTTCGG 57.248 33.333 4.14 0.00 0.00 4.30
4572 4848 9.745880 GTATAAAGTTGAGTCATCTATTTCGGA 57.254 33.333 4.14 0.00 0.00 4.55
4574 4850 9.838339 ATAAAGTTGAGTCATCTATTTCGGAAT 57.162 29.630 4.14 0.00 0.00 3.01
4575 4851 7.545362 AAGTTGAGTCATCTATTTCGGAATG 57.455 36.000 0.00 0.00 0.00 2.67
4576 4852 6.051717 AGTTGAGTCATCTATTTCGGAATGG 58.948 40.000 0.00 0.00 0.00 3.16
4577 4853 5.869649 TGAGTCATCTATTTCGGAATGGA 57.130 39.130 4.80 4.80 37.20 3.41
4578 4854 5.847304 TGAGTCATCTATTTCGGAATGGAG 58.153 41.667 8.58 1.59 36.39 3.86
4579 4855 5.220710 AGTCATCTATTTCGGAATGGAGG 57.779 43.478 8.04 8.04 36.39 4.30
4580 4856 4.040952 AGTCATCTATTTCGGAATGGAGGG 59.959 45.833 13.61 6.32 36.39 4.30
4581 4857 4.040461 GTCATCTATTTCGGAATGGAGGGA 59.960 45.833 13.61 8.36 36.39 4.20
4582 4858 4.284490 TCATCTATTTCGGAATGGAGGGAG 59.716 45.833 13.61 2.24 36.39 4.30
4739 5015 7.582667 ACTTGTGTAGCTCTAATTGGTTTTT 57.417 32.000 0.00 0.00 0.00 1.94
4835 5111 7.683437 ATCTGATGCAATGTATGTATTCCTG 57.317 36.000 0.00 0.00 34.17 3.86
4869 5145 3.119137 GGACCCAGTTTTGAACCATATGC 60.119 47.826 0.00 0.00 0.00 3.14
5081 5369 2.234661 TCTCAGTGTATTGGTGGCTCAG 59.765 50.000 0.00 0.00 0.00 3.35
5465 5753 6.938030 TGTTATTCTTTTATGTCGTCCAGGTT 59.062 34.615 0.00 0.00 0.00 3.50
5700 5996 1.103398 ACCTGTTGTGCTTGAGGTGC 61.103 55.000 0.00 0.00 37.44 5.01
5801 6099 0.250295 AAGCAAGGTCGTTAGCTGCA 60.250 50.000 1.02 0.00 37.41 4.41
5805 6103 2.143122 CAAGGTCGTTAGCTGCAGAAA 58.857 47.619 20.43 7.96 32.57 2.52
6041 6339 0.250467 TTGGCTGCAGTTCTCCTGAC 60.250 55.000 16.64 0.00 44.49 3.51
6058 6356 3.247648 CCTGACAACTCACCAGTAAAACG 59.752 47.826 0.00 0.00 30.14 3.60
6065 6363 4.466827 ACTCACCAGTAAAACGGGAAAAT 58.533 39.130 3.16 0.00 36.90 1.82
6096 6394 3.737850 AGTCAAGACAGGCAGAAGAAAG 58.262 45.455 2.72 0.00 0.00 2.62
6113 6411 2.125106 GTAGTCTTGGCTGGCCGG 60.125 66.667 7.41 7.41 39.42 6.13
6183 6481 5.617308 GCTCAGAGAATTGAAAGCAGTGAAG 60.617 44.000 0.00 0.00 0.00 3.02
6184 6482 4.214971 TCAGAGAATTGAAAGCAGTGAAGC 59.785 41.667 0.00 0.00 0.00 3.86
6186 6484 3.141398 AGAATTGAAAGCAGTGAAGCGA 58.859 40.909 0.00 0.00 40.15 4.93
6213 6511 2.928731 GCTGACAAGTCTAGTGGAGTGC 60.929 54.545 1.53 0.00 0.00 4.40
6221 6519 0.459237 CTAGTGGAGTGCAAGCCTCG 60.459 60.000 7.53 0.00 0.00 4.63
6234 6532 4.083324 TGCAAGCCTCGAAAAGAAATAGTG 60.083 41.667 0.00 0.00 0.00 2.74
6239 6537 3.127030 CCTCGAAAAGAAATAGTGGCACC 59.873 47.826 15.27 0.00 0.00 5.01
6274 6575 4.067192 CCAAAATCAAGCAAGAAAAGGGG 58.933 43.478 0.00 0.00 0.00 4.79
6298 6599 2.041620 ACATGGCTGTGGAGGTAACAAT 59.958 45.455 0.00 0.00 33.95 2.71
6342 6643 2.032681 AGGGGCACAGCTCGAAAC 59.967 61.111 0.00 0.00 0.00 2.78
6354 6655 5.180492 CACAGCTCGAAACCATTAAAAGGTA 59.820 40.000 3.64 0.00 38.76 3.08
6362 6663 7.122055 TCGAAACCATTAAAAGGTATTGCTGAT 59.878 33.333 3.64 0.00 38.76 2.90
6377 6678 2.244117 CTGATGTGTCCCACCCCTCG 62.244 65.000 0.00 0.00 32.73 4.63
6395 6696 2.433446 CCAGCTGCAGTGGTTCCT 59.567 61.111 16.64 0.00 0.00 3.36
6443 6744 5.259632 AGAGCAAACAGGCTAAAATCAGAT 58.740 37.500 0.00 0.00 45.99 2.90
6452 6753 7.215789 ACAGGCTAAAATCAGATATGACAGAG 58.784 38.462 0.00 0.00 0.00 3.35
6463 6764 5.024785 AGATATGACAGAGGAGGATGATGG 58.975 45.833 0.00 0.00 0.00 3.51
6466 6767 2.292455 TGACAGAGGAGGATGATGGTCA 60.292 50.000 0.00 0.00 0.00 4.02
6554 6855 5.277011 GGTTGAAGCAAAGAAGCAAATGAAC 60.277 40.000 0.00 0.00 36.85 3.18
6560 6861 4.986659 GCAAAGAAGCAAATGAACATGAGT 59.013 37.500 0.00 0.00 0.00 3.41
6571 6872 7.524912 CAAATGAACATGAGTAAAGGAGACAG 58.475 38.462 0.00 0.00 0.00 3.51
6572 6873 4.569943 TGAACATGAGTAAAGGAGACAGC 58.430 43.478 0.00 0.00 0.00 4.40
6573 6874 4.040339 TGAACATGAGTAAAGGAGACAGCA 59.960 41.667 0.00 0.00 0.00 4.41
6594 6895 1.022735 GATGATGGCTCCAACTGCTG 58.977 55.000 0.00 0.00 0.00 4.41
6623 6924 1.992519 ATGAGGAGCACCCATCTGCC 61.993 60.000 0.00 0.00 37.96 4.85
6709 7010 2.554032 CCAGAACCAAAACGATGAAGCT 59.446 45.455 0.00 0.00 0.00 3.74
6845 7146 0.879400 CCCTGCATGAGCTCGACATC 60.879 60.000 9.64 0.00 42.74 3.06
6962 7263 0.555769 CTACAGGAGAGGAGAGGGCT 59.444 60.000 0.00 0.00 0.00 5.19
6963 7264 0.553819 TACAGGAGAGGAGAGGGCTC 59.446 60.000 0.00 0.00 40.54 4.70
6992 7293 1.612469 GAGATCATCCGATGCGCGTG 61.612 60.000 6.97 0.00 38.67 5.34
7016 7317 2.165845 AGGGTACACTTGCACTATCGAC 59.834 50.000 0.00 0.00 0.00 4.20
7061 7362 1.692411 AAAAGGAACTGTCCCTGCAC 58.308 50.000 0.00 0.00 46.30 4.57
7067 7368 4.363990 CTGTCCCTGCACGAGCGT 62.364 66.667 0.00 0.00 46.23 5.07
7083 7384 2.509336 GTGACATCTGCCCGGTCG 60.509 66.667 0.00 0.00 34.32 4.79
7223 7524 4.459089 GCCAGGACGGAGCACCTC 62.459 72.222 0.00 0.00 35.61 3.85
7257 7558 1.003718 GACAGGCCCTACGTTTGCT 60.004 57.895 0.00 0.00 0.00 3.91
7259 7560 2.359975 AGGCCCTACGTTTGCTGC 60.360 61.111 0.00 0.00 0.00 5.25
7367 7668 1.093159 CCAAGACATGAAGCAGGAGC 58.907 55.000 0.00 0.00 42.56 4.70
7440 7741 0.527817 GTACCCGGAGCTCACGATTG 60.528 60.000 21.43 13.44 0.00 2.67
7492 7794 2.969821 ACAATGGGTGTGCTTTCCTA 57.030 45.000 0.00 0.00 39.72 2.94
7494 7796 3.091545 ACAATGGGTGTGCTTTCCTATG 58.908 45.455 0.00 0.00 39.72 2.23
7605 7924 9.793245 GTATTGACGTTGTCACTATATAAATGC 57.207 33.333 0.00 0.00 42.60 3.56
7625 7944 7.600231 AATGCCATGTTTAATATGATCACCA 57.400 32.000 0.00 0.00 0.00 4.17
7690 8009 1.810151 ACGATAATTTTGCTGCGGTGT 59.190 42.857 0.00 0.00 0.00 4.16
7788 8107 6.614694 TGGTATGGTGATACTGTAGTTGTT 57.385 37.500 0.00 0.00 35.63 2.83
7791 8110 7.398047 TGGTATGGTGATACTGTAGTTGTTAGT 59.602 37.037 0.00 0.00 35.63 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.717194 CGCAAAGAATGGCTGCAAAT 58.283 45.000 0.50 0.00 35.78 2.32
127 131 4.080695 TGGATGGATCAAAGACTTCAGGAG 60.081 45.833 0.00 0.00 0.00 3.69
132 136 6.016443 GGATTGATGGATGGATCAAAGACTTC 60.016 42.308 0.00 0.00 43.77 3.01
133 137 5.832060 GGATTGATGGATGGATCAAAGACTT 59.168 40.000 0.00 0.00 43.77 3.01
134 138 5.103813 TGGATTGATGGATGGATCAAAGACT 60.104 40.000 0.00 0.00 43.77 3.24
136 140 5.391577 TGGATTGATGGATGGATCAAAGA 57.608 39.130 0.00 0.00 43.77 2.52
137 141 5.773176 TGATGGATTGATGGATGGATCAAAG 59.227 40.000 0.00 0.00 43.77 2.77
138 142 5.707495 TGATGGATTGATGGATGGATCAAA 58.293 37.500 0.00 0.00 43.77 2.69
139 143 5.327737 TGATGGATTGATGGATGGATCAA 57.672 39.130 0.00 0.00 44.47 2.57
140 144 5.506708 GATGATGGATTGATGGATGGATCA 58.493 41.667 0.00 0.00 0.00 2.92
141 145 4.575236 CGATGATGGATTGATGGATGGATC 59.425 45.833 0.00 0.00 0.00 3.36
142 146 4.524053 CGATGATGGATTGATGGATGGAT 58.476 43.478 0.00 0.00 0.00 3.41
143 147 3.307904 CCGATGATGGATTGATGGATGGA 60.308 47.826 0.00 0.00 0.00 3.41
144 148 3.014623 CCGATGATGGATTGATGGATGG 58.985 50.000 0.00 0.00 0.00 3.51
145 149 3.439129 CACCGATGATGGATTGATGGATG 59.561 47.826 0.00 0.00 0.00 3.51
146 150 3.328637 TCACCGATGATGGATTGATGGAT 59.671 43.478 0.00 0.00 0.00 3.41
147 151 2.705127 TCACCGATGATGGATTGATGGA 59.295 45.455 0.00 0.00 0.00 3.41
148 152 2.810274 GTCACCGATGATGGATTGATGG 59.190 50.000 0.00 0.00 37.14 3.51
149 153 3.469739 TGTCACCGATGATGGATTGATG 58.530 45.455 0.00 0.00 37.14 3.07
192 206 0.892755 ACGATACCAGGCGTGAAGAA 59.107 50.000 8.24 0.00 39.56 2.52
193 207 0.454600 GACGATACCAGGCGTGAAGA 59.545 55.000 8.24 0.00 41.34 2.87
196 210 0.384309 GATGACGATACCAGGCGTGA 59.616 55.000 8.24 0.00 41.34 4.35
216 230 2.280628 GTCAAACTCCGTGGGATGATC 58.719 52.381 0.00 0.00 0.00 2.92
220 234 0.324943 CCTGTCAAACTCCGTGGGAT 59.675 55.000 0.00 0.00 0.00 3.85
232 246 1.707106 TACCTTCCGTCACCTGTCAA 58.293 50.000 0.00 0.00 0.00 3.18
244 258 3.901844 TGCCACTATCTACCATACCTTCC 59.098 47.826 0.00 0.00 0.00 3.46
252 266 3.779444 CCTAGGATGCCACTATCTACCA 58.221 50.000 1.05 0.00 0.00 3.25
253 267 2.498078 GCCTAGGATGCCACTATCTACC 59.502 54.545 14.75 0.00 0.00 3.18
254 268 3.165875 TGCCTAGGATGCCACTATCTAC 58.834 50.000 14.75 0.00 0.00 2.59
255 269 3.435275 CTGCCTAGGATGCCACTATCTA 58.565 50.000 14.75 0.00 0.00 1.98
257 271 2.758736 CTGCCTAGGATGCCACTATC 57.241 55.000 14.75 0.00 0.00 2.08
286 311 0.262285 GCAGGTAGACTAGACCCCCT 59.738 60.000 0.00 0.00 37.73 4.79
287 312 1.108132 CGCAGGTAGACTAGACCCCC 61.108 65.000 0.00 0.00 37.73 5.40
292 317 2.820619 CGCGCGCAGGTAGACTAGA 61.821 63.158 32.61 0.00 0.00 2.43
293 318 2.352457 CGCGCGCAGGTAGACTAG 60.352 66.667 32.61 6.38 0.00 2.57
294 319 3.129502 ACGCGCGCAGGTAGACTA 61.130 61.111 32.58 0.00 0.00 2.59
295 320 4.778415 CACGCGCGCAGGTAGACT 62.778 66.667 32.58 3.21 0.00 3.24
296 321 3.672255 TACACGCGCGCAGGTAGAC 62.672 63.158 32.58 0.00 0.00 2.59
297 322 2.475098 TTTACACGCGCGCAGGTAGA 62.475 55.000 32.58 22.64 0.00 2.59
298 323 2.089936 TTTACACGCGCGCAGGTAG 61.090 57.895 32.58 16.92 0.00 3.18
299 324 2.049341 TTTACACGCGCGCAGGTA 60.049 55.556 32.58 27.13 0.00 3.08
300 325 3.708734 GTTTACACGCGCGCAGGT 61.709 61.111 32.58 28.22 0.00 4.00
301 326 4.439472 GGTTTACACGCGCGCAGG 62.439 66.667 32.58 23.94 0.00 4.85
302 327 3.411351 AGGTTTACACGCGCGCAG 61.411 61.111 32.58 25.22 0.00 5.18
324 349 9.197694 GCAAGATCTACCACATACTGTAATAAG 57.802 37.037 0.00 0.00 0.00 1.73
325 350 8.924303 AGCAAGATCTACCACATACTGTAATAA 58.076 33.333 0.00 0.00 0.00 1.40
326 351 8.478775 AGCAAGATCTACCACATACTGTAATA 57.521 34.615 0.00 0.00 0.00 0.98
327 352 7.366847 AGCAAGATCTACCACATACTGTAAT 57.633 36.000 0.00 0.00 0.00 1.89
330 355 5.683876 AAGCAAGATCTACCACATACTGT 57.316 39.130 0.00 0.00 0.00 3.55
337 363 5.462405 CGGACTATAAGCAAGATCTACCAC 58.538 45.833 0.00 0.00 0.00 4.16
338 364 4.523173 CCGGACTATAAGCAAGATCTACCA 59.477 45.833 0.00 0.00 0.00 3.25
342 368 2.900546 CCCCGGACTATAAGCAAGATCT 59.099 50.000 0.73 0.00 0.00 2.75
346 372 0.250338 GGCCCCGGACTATAAGCAAG 60.250 60.000 0.73 0.00 0.00 4.01
361 404 2.781431 AAAATGTGGGTCCTCGGCCC 62.781 60.000 0.00 8.09 46.26 5.80
362 405 1.304134 AAAATGTGGGTCCTCGGCC 60.304 57.895 0.00 0.00 0.00 6.13
363 406 0.893727 ACAAAATGTGGGTCCTCGGC 60.894 55.000 0.00 0.00 0.00 5.54
364 407 1.539827 GAACAAAATGTGGGTCCTCGG 59.460 52.381 0.00 0.00 0.00 4.63
365 408 1.196808 CGAACAAAATGTGGGTCCTCG 59.803 52.381 0.00 0.00 0.00 4.63
366 409 2.227194 ACGAACAAAATGTGGGTCCTC 58.773 47.619 0.00 0.00 0.00 3.71
367 410 2.358322 ACGAACAAAATGTGGGTCCT 57.642 45.000 0.00 0.00 0.00 3.85
368 411 3.404899 TCTACGAACAAAATGTGGGTCC 58.595 45.455 0.00 0.00 0.00 4.46
369 412 4.753107 TCTTCTACGAACAAAATGTGGGTC 59.247 41.667 0.00 0.00 0.00 4.46
370 413 4.710324 TCTTCTACGAACAAAATGTGGGT 58.290 39.130 0.00 0.00 0.00 4.51
371 414 5.682943 TTCTTCTACGAACAAAATGTGGG 57.317 39.130 0.00 0.00 0.00 4.61
372 415 8.029642 AGTATTCTTCTACGAACAAAATGTGG 57.970 34.615 0.00 0.00 0.00 4.17
373 416 9.318041 CAAGTATTCTTCTACGAACAAAATGTG 57.682 33.333 0.00 0.00 0.00 3.21
374 417 8.015658 GCAAGTATTCTTCTACGAACAAAATGT 58.984 33.333 0.00 0.00 0.00 2.71
375 418 7.481798 GGCAAGTATTCTTCTACGAACAAAATG 59.518 37.037 0.00 0.00 0.00 2.32
376 419 7.361799 GGGCAAGTATTCTTCTACGAACAAAAT 60.362 37.037 0.00 0.00 0.00 1.82
388 431 4.207891 TGTGAGAGGGCAAGTATTCTTC 57.792 45.455 0.00 0.00 0.00 2.87
394 437 3.173151 TCTTCATGTGAGAGGGCAAGTA 58.827 45.455 0.00 0.00 0.00 2.24
461 508 5.009631 TGATTGATGATTCGACCAAAAGGT 58.990 37.500 0.00 0.00 0.00 3.50
471 518 8.585189 TTTCAGTAGAGATGATTGATGATTCG 57.415 34.615 0.00 0.00 0.00 3.34
475 522 9.948964 TTTCTTTTCAGTAGAGATGATTGATGA 57.051 29.630 0.00 0.00 0.00 2.92
476 523 9.985318 GTTTCTTTTCAGTAGAGATGATTGATG 57.015 33.333 0.00 0.00 0.00 3.07
521 568 2.299867 ACGAAGATGCCTTGCCATTTTT 59.700 40.909 0.00 0.00 31.62 1.94
545 592 6.465178 GCCATTTTCCTTTTCTTTTCCCCTAA 60.465 38.462 0.00 0.00 0.00 2.69
546 593 5.012664 GCCATTTTCCTTTTCTTTTCCCCTA 59.987 40.000 0.00 0.00 0.00 3.53
547 594 4.202461 GCCATTTTCCTTTTCTTTTCCCCT 60.202 41.667 0.00 0.00 0.00 4.79
595 644 2.286365 AACGGCCCTTTCATCAGAAA 57.714 45.000 0.00 0.00 41.26 2.52
596 645 2.706890 GTAACGGCCCTTTCATCAGAA 58.293 47.619 0.00 0.00 0.00 3.02
597 646 1.404986 CGTAACGGCCCTTTCATCAGA 60.405 52.381 0.00 0.00 0.00 3.27
598 647 1.006832 CGTAACGGCCCTTTCATCAG 58.993 55.000 0.00 0.00 0.00 2.90
599 648 0.322322 ACGTAACGGCCCTTTCATCA 59.678 50.000 0.00 0.00 0.00 3.07
600 649 2.298411 TACGTAACGGCCCTTTCATC 57.702 50.000 0.00 0.00 0.00 2.92
601 650 2.994186 ATACGTAACGGCCCTTTCAT 57.006 45.000 0.00 0.00 0.00 2.57
632 681 1.522580 GCGGAGAACTGCATCCTCC 60.523 63.158 15.36 15.36 46.56 4.30
641 690 4.083862 GGGCCTTCGCGGAGAACT 62.084 66.667 18.24 0.00 34.66 3.01
688 743 2.056094 AAGTCGGTAACTACACGTGC 57.944 50.000 17.22 0.00 37.17 5.34
690 745 2.159627 CGGTAAGTCGGTAACTACACGT 59.840 50.000 0.00 0.00 37.17 4.49
692 747 2.519963 GCGGTAAGTCGGTAACTACAC 58.480 52.381 0.00 0.00 37.17 2.90
693 748 1.130373 CGCGGTAAGTCGGTAACTACA 59.870 52.381 0.00 0.00 37.17 2.74
724 785 0.322648 GGTTACCGGCTTACCACTGT 59.677 55.000 13.67 0.00 34.57 3.55
725 786 0.322322 TGGTTACCGGCTTACCACTG 59.678 55.000 16.48 0.00 37.04 3.66
726 787 2.762665 TGGTTACCGGCTTACCACT 58.237 52.632 16.48 0.00 37.04 4.00
728 789 0.322322 CTGTGGTTACCGGCTTACCA 59.678 55.000 16.48 16.48 39.53 3.25
729 790 0.609662 TCTGTGGTTACCGGCTTACC 59.390 55.000 0.00 7.39 0.00 2.85
730 791 1.718396 GTCTGTGGTTACCGGCTTAC 58.282 55.000 0.00 0.00 0.00 2.34
731 792 0.244450 CGTCTGTGGTTACCGGCTTA 59.756 55.000 0.00 0.00 0.00 3.09
732 793 1.005394 CGTCTGTGGTTACCGGCTT 60.005 57.895 0.00 0.00 0.00 4.35
733 794 2.654877 CGTCTGTGGTTACCGGCT 59.345 61.111 0.00 0.00 0.00 5.52
734 795 2.433664 CCGTCTGTGGTTACCGGC 60.434 66.667 0.00 0.00 0.00 6.13
736 797 1.443194 CGTCCGTCTGTGGTTACCG 60.443 63.158 0.00 0.00 0.00 4.02
737 798 1.080298 CCGTCCGTCTGTGGTTACC 60.080 63.158 0.00 0.00 0.00 2.85
738 799 1.080298 CCCGTCCGTCTGTGGTTAC 60.080 63.158 0.00 0.00 0.00 2.50
739 800 2.934570 GCCCGTCCGTCTGTGGTTA 61.935 63.158 0.00 0.00 0.00 2.85
740 801 4.309950 GCCCGTCCGTCTGTGGTT 62.310 66.667 0.00 0.00 0.00 3.67
742 803 3.818121 TTTGCCCGTCCGTCTGTGG 62.818 63.158 0.00 0.00 0.00 4.17
745 806 3.411351 CGTTTGCCCGTCCGTCTG 61.411 66.667 0.00 0.00 0.00 3.51
768 831 0.962489 CTGTGGACTCGAGTCTTGGT 59.038 55.000 36.98 9.03 44.20 3.67
788 851 3.708734 GCGGTTGGTTCGTCGTGG 61.709 66.667 0.00 0.00 0.00 4.94
789 852 2.660552 AGCGGTTGGTTCGTCGTG 60.661 61.111 0.00 0.00 0.00 4.35
790 853 2.660552 CAGCGGTTGGTTCGTCGT 60.661 61.111 0.00 0.00 0.00 4.34
791 854 4.072088 GCAGCGGTTGGTTCGTCG 62.072 66.667 0.00 0.00 0.00 5.12
792 855 4.072088 CGCAGCGGTTGGTTCGTC 62.072 66.667 7.00 0.00 0.00 4.20
803 866 4.320928 TTTTGCCGAACCGCAGCG 62.321 61.111 8.18 8.18 40.53 5.18
861 939 4.521062 CGCAGAGGAGGAAGGCGG 62.521 72.222 0.00 0.00 43.63 6.13
943 1031 4.397010 CATTGGGGTGGGGTGGGG 62.397 72.222 0.00 0.00 0.00 4.96
953 1041 3.876198 GCTACACGCGCATTGGGG 61.876 66.667 5.73 0.00 34.15 4.96
965 1053 0.388134 GTTTCCGCTCAGACGCTACA 60.388 55.000 0.00 0.00 0.00 2.74
1668 1811 4.699522 GTGACCCCAGGCACGTCC 62.700 72.222 0.00 0.00 0.00 4.79
1897 2050 0.741221 GGCGGAACTAGCACAGGAAG 60.741 60.000 0.00 0.00 36.08 3.46
1905 2058 2.508663 GGACACGGCGGAACTAGC 60.509 66.667 13.24 0.00 0.00 3.42
1942 2095 0.386731 CGCAATTTGACGGAACCACC 60.387 55.000 0.00 0.00 0.00 4.61
1954 2107 2.040330 TGCTTCTGCACCGCAATTT 58.960 47.368 0.00 0.00 45.31 1.82
2055 2208 4.391830 TCAAATCGTTCAAAATCGGGAGAG 59.608 41.667 0.00 0.00 45.48 3.20
2063 2216 9.941664 GTATCATCAGATCAAATCGTTCAAAAT 57.058 29.630 0.00 0.00 35.67 1.82
2082 2236 2.411748 CCACACACACACACGTATCATC 59.588 50.000 0.00 0.00 0.00 2.92
2090 2244 1.537638 TCAACAACCACACACACACAC 59.462 47.619 0.00 0.00 0.00 3.82
2091 2245 1.537638 GTCAACAACCACACACACACA 59.462 47.619 0.00 0.00 0.00 3.72
2092 2246 1.465020 CGTCAACAACCACACACACAC 60.465 52.381 0.00 0.00 0.00 3.82
2093 2247 0.799393 CGTCAACAACCACACACACA 59.201 50.000 0.00 0.00 0.00 3.72
2131 2285 0.257328 TCTGCACCAACCTGTTCCAA 59.743 50.000 0.00 0.00 0.00 3.53
2235 2389 5.617087 GCAGTGTACGAAAGGAGAATTTTCC 60.617 44.000 6.93 6.93 37.52 3.13
2242 2396 3.678056 AATGCAGTGTACGAAAGGAGA 57.322 42.857 0.00 0.00 0.00 3.71
2493 2653 7.549134 TCATGTGTTCACTAGAAATACACATCC 59.451 37.037 22.41 4.07 42.37 3.51
2505 2665 5.407407 AAGTACCCTCATGTGTTCACTAG 57.593 43.478 4.59 0.00 0.00 2.57
2520 2680 2.097825 TGCTAGAGGAACGAAGTACCC 58.902 52.381 0.00 0.00 45.00 3.69
2523 2683 2.100916 GGCATGCTAGAGGAACGAAGTA 59.899 50.000 18.92 0.00 45.00 2.24
2527 2687 1.123077 ATGGCATGCTAGAGGAACGA 58.877 50.000 18.92 0.00 0.00 3.85
2535 2695 3.444742 TCAGTTTTCCAATGGCATGCTAG 59.555 43.478 18.92 0.00 0.00 3.42
2537 2697 2.250031 TCAGTTTTCCAATGGCATGCT 58.750 42.857 18.92 0.00 0.00 3.79
2562 2722 0.899019 TGATGGCCACGTAACAGCTA 59.101 50.000 8.16 0.00 0.00 3.32
2572 2732 3.892200 CCAACAAAGTGATGGCCAC 57.108 52.632 8.16 2.36 46.03 5.01
2652 2812 5.782331 AGGAGTAGCTATATTTGATGCCTCA 59.218 40.000 0.00 0.00 0.00 3.86
2873 3035 8.691661 ATAACAAGGAATTATAAGAACGGCAT 57.308 30.769 0.00 0.00 0.00 4.40
2874 3036 8.402472 CAATAACAAGGAATTATAAGAACGGCA 58.598 33.333 0.00 0.00 0.00 5.69
3211 3386 2.105477 AGCACAGAAAGAGAGCTCCAAA 59.895 45.455 10.93 0.00 0.00 3.28
3272 3447 7.718525 TGGAAAACAATAAGTAAAAGGTCCAC 58.281 34.615 0.00 0.00 0.00 4.02
3330 3505 0.951558 GAACTGCGTGGTTCCATTGT 59.048 50.000 10.17 0.00 39.50 2.71
3764 3981 1.141657 GCATTAGCCAGATGACTCCCA 59.858 52.381 0.00 0.00 33.58 4.37
3779 3996 2.618816 CCCTTCACTTCCAGCTGCATTA 60.619 50.000 8.66 0.00 0.00 1.90
3868 4085 3.674997 TGATCAGGAAAAAGGGAAGACG 58.325 45.455 0.00 0.00 0.00 4.18
3869 4086 3.441922 GCTGATCAGGAAAAAGGGAAGAC 59.558 47.826 23.89 0.00 0.00 3.01
4239 4456 2.070783 CAAGTGGCACATTTTCCATGC 58.929 47.619 21.41 0.00 44.52 4.06
4251 4469 6.040209 AGCAATCAAATTTATCAAGTGGCA 57.960 33.333 0.00 0.00 0.00 4.92
4280 4556 2.305009 AGGAACGGAGGGAGTATTACG 58.695 52.381 0.00 0.00 0.00 3.18
4317 4593 9.204570 GTACTAAGCTTGAGACACTTATTTTGA 57.795 33.333 9.86 0.00 0.00 2.69
4354 4630 9.826574 ATAAGTGTCAACTTTGTACTAACTTCA 57.173 29.630 0.00 0.00 44.47 3.02
4375 4651 5.536497 ATTCCCTCTGTCCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
4499 4775 8.915036 GTCATCTATTTTAGAACAGAGGGAGTA 58.085 37.037 0.00 0.00 38.50 2.59
4500 4776 7.147637 GGTCATCTATTTTAGAACAGAGGGAGT 60.148 40.741 0.00 0.00 38.50 3.85
4501 4777 7.213678 GGTCATCTATTTTAGAACAGAGGGAG 58.786 42.308 0.00 0.00 38.50 4.30
4502 4778 6.099845 GGGTCATCTATTTTAGAACAGAGGGA 59.900 42.308 0.00 0.00 38.50 4.20
4503 4779 6.126768 TGGGTCATCTATTTTAGAACAGAGGG 60.127 42.308 0.00 0.00 38.50 4.30
4504 4780 6.889198 TGGGTCATCTATTTTAGAACAGAGG 58.111 40.000 0.00 0.00 38.50 3.69
4505 4781 8.043710 AGTTGGGTCATCTATTTTAGAACAGAG 58.956 37.037 0.00 0.00 38.50 3.35
4506 4782 7.918076 AGTTGGGTCATCTATTTTAGAACAGA 58.082 34.615 0.00 0.00 38.50 3.41
4507 4783 8.567285 AAGTTGGGTCATCTATTTTAGAACAG 57.433 34.615 0.00 0.00 38.50 3.16
4508 4784 8.792633 CAAAGTTGGGTCATCTATTTTAGAACA 58.207 33.333 0.00 0.00 38.50 3.18
4509 4785 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
4510 4786 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
4511 4787 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
4512 4788 9.449719 AGTACAAAGTTGGGTCATCTATTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
4514 4790 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4515 4791 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
4516 4792 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
4517 4793 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
4518 4794 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
4519 4795 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
4520 4796 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
4521 4797 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
4522 4798 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
4523 4799 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
4545 4821 9.751542 CCGAAATAGATGACTCAACTTTATACT 57.248 33.333 0.00 0.00 0.00 2.12
4546 4822 9.745880 TCCGAAATAGATGACTCAACTTTATAC 57.254 33.333 0.00 0.00 0.00 1.47
4548 4824 9.838339 ATTCCGAAATAGATGACTCAACTTTAT 57.162 29.630 0.00 0.00 0.00 1.40
4549 4825 9.098355 CATTCCGAAATAGATGACTCAACTTTA 57.902 33.333 0.00 0.00 0.00 1.85
4550 4826 7.066284 CCATTCCGAAATAGATGACTCAACTTT 59.934 37.037 0.00 0.00 0.00 2.66
4551 4827 6.540189 CCATTCCGAAATAGATGACTCAACTT 59.460 38.462 0.00 0.00 0.00 2.66
4552 4828 6.051717 CCATTCCGAAATAGATGACTCAACT 58.948 40.000 0.00 0.00 0.00 3.16
4553 4829 6.049149 TCCATTCCGAAATAGATGACTCAAC 58.951 40.000 0.00 0.00 0.00 3.18
4554 4830 6.233905 TCCATTCCGAAATAGATGACTCAA 57.766 37.500 0.00 0.00 0.00 3.02
4555 4831 5.221521 CCTCCATTCCGAAATAGATGACTCA 60.222 44.000 0.00 0.00 0.00 3.41
4556 4832 5.233988 CCTCCATTCCGAAATAGATGACTC 58.766 45.833 0.00 0.00 0.00 3.36
4557 4833 4.040952 CCCTCCATTCCGAAATAGATGACT 59.959 45.833 0.00 0.00 0.00 3.41
4558 4834 4.040461 TCCCTCCATTCCGAAATAGATGAC 59.960 45.833 0.00 0.00 0.00 3.06
4559 4835 4.231273 TCCCTCCATTCCGAAATAGATGA 58.769 43.478 0.00 0.00 0.00 2.92
4560 4836 4.040952 ACTCCCTCCATTCCGAAATAGATG 59.959 45.833 0.00 0.00 0.00 2.90
4561 4837 4.235372 ACTCCCTCCATTCCGAAATAGAT 58.765 43.478 0.00 0.00 0.00 1.98
4562 4838 3.654273 ACTCCCTCCATTCCGAAATAGA 58.346 45.455 0.00 0.00 0.00 1.98
4563 4839 5.746990 ATACTCCCTCCATTCCGAAATAG 57.253 43.478 0.00 0.00 0.00 1.73
4564 4840 6.509523 AAATACTCCCTCCATTCCGAAATA 57.490 37.500 0.00 0.00 0.00 1.40
4565 4841 5.388599 AAATACTCCCTCCATTCCGAAAT 57.611 39.130 0.00 0.00 0.00 2.17
4566 4842 4.855298 AAATACTCCCTCCATTCCGAAA 57.145 40.909 0.00 0.00 0.00 3.46
4567 4843 4.347000 CCTAAATACTCCCTCCATTCCGAA 59.653 45.833 0.00 0.00 0.00 4.30
4568 4844 3.901844 CCTAAATACTCCCTCCATTCCGA 59.098 47.826 0.00 0.00 0.00 4.55
4569 4845 3.901844 TCCTAAATACTCCCTCCATTCCG 59.098 47.826 0.00 0.00 0.00 4.30
4570 4846 5.132144 TGTTCCTAAATACTCCCTCCATTCC 59.868 44.000 0.00 0.00 0.00 3.01
4571 4847 6.099845 TCTGTTCCTAAATACTCCCTCCATTC 59.900 42.308 0.00 0.00 0.00 2.67
4572 4848 5.970640 TCTGTTCCTAAATACTCCCTCCATT 59.029 40.000 0.00 0.00 0.00 3.16
4573 4849 5.538877 TCTGTTCCTAAATACTCCCTCCAT 58.461 41.667 0.00 0.00 0.00 3.41
4574 4850 4.955335 TCTGTTCCTAAATACTCCCTCCA 58.045 43.478 0.00 0.00 0.00 3.86
4575 4851 4.345547 CCTCTGTTCCTAAATACTCCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
4576 4852 4.963628 ACCTCTGTTCCTAAATACTCCCTC 59.036 45.833 0.00 0.00 0.00 4.30
4577 4853 4.961585 ACCTCTGTTCCTAAATACTCCCT 58.038 43.478 0.00 0.00 0.00 4.20
4578 4854 5.898397 ACTACCTCTGTTCCTAAATACTCCC 59.102 44.000 0.00 0.00 0.00 4.30
4579 4855 8.709272 ATACTACCTCTGTTCCTAAATACTCC 57.291 38.462 0.00 0.00 0.00 3.85
4742 5018 7.116662 CACTTTAGCATAGCAAATGAGCAAAAA 59.883 33.333 3.43 0.00 36.85 1.94
4743 5019 6.587226 CACTTTAGCATAGCAAATGAGCAAAA 59.413 34.615 3.43 0.00 36.85 2.44
4744 5020 6.094719 CACTTTAGCATAGCAAATGAGCAAA 58.905 36.000 3.43 0.24 36.85 3.68
4835 5111 1.340405 ACTGGGTCCTGCATGTTGATC 60.340 52.381 0.00 0.00 0.00 2.92
4869 5145 1.340308 TGACAGGTCCAGCATCATTGG 60.340 52.381 0.00 0.00 37.04 3.16
5081 5369 3.877508 CCTCTTGGTCCATTCGAAATACC 59.122 47.826 16.08 16.08 0.00 2.73
5465 5753 2.501316 TGAGTAAGCAGCTTGATGGCTA 59.499 45.455 18.54 0.00 41.00 3.93
5526 5814 2.034558 AGGATGCCACAAGTTCAAAACG 59.965 45.455 0.00 0.00 36.23 3.60
5700 5996 7.270779 TCAGAACCAAGAATCAGTATCATGAG 58.729 38.462 0.09 0.00 31.44 2.90
5801 6099 2.494870 GCCATGCTCAACTTCCATTTCT 59.505 45.455 0.00 0.00 0.00 2.52
5805 6103 1.471119 CAGCCATGCTCAACTTCCAT 58.529 50.000 0.00 0.00 36.40 3.41
6041 6339 2.841215 TCCCGTTTTACTGGTGAGTTG 58.159 47.619 0.00 0.00 33.21 3.16
6058 6356 0.323451 ACTCCCCTCGCAATTTTCCC 60.323 55.000 0.00 0.00 0.00 3.97
6065 6363 1.118965 TGTCTTGACTCCCCTCGCAA 61.119 55.000 2.35 0.00 0.00 4.85
6096 6394 2.125106 CCGGCCAGCCAAGACTAC 60.125 66.667 9.78 0.00 35.37 2.73
6113 6411 0.539438 TCCATGCTTTCCCACACCAC 60.539 55.000 0.00 0.00 0.00 4.16
6183 6481 1.004440 ACTTGTCAGCCTCCTTCGC 60.004 57.895 0.00 0.00 0.00 4.70
6184 6482 0.605589 AGACTTGTCAGCCTCCTTCG 59.394 55.000 3.49 0.00 0.00 3.79
6186 6484 2.564947 CACTAGACTTGTCAGCCTCCTT 59.435 50.000 0.00 0.00 0.00 3.36
6213 6511 4.672801 GCCACTATTTCTTTTCGAGGCTTG 60.673 45.833 0.00 0.00 36.72 4.01
6221 6519 6.919721 TGTTATGGTGCCACTATTTCTTTTC 58.080 36.000 0.00 0.00 0.00 2.29
6234 6532 3.275617 TGGTACATCTGTTATGGTGCC 57.724 47.619 0.00 0.00 36.67 5.01
6239 6537 7.537715 TGCTTGATTTTGGTACATCTGTTATG 58.462 34.615 0.00 0.00 39.30 1.90
6274 6575 0.618458 TACCTCCACAGCCATGTTCC 59.382 55.000 0.00 0.00 37.65 3.62
6298 6599 0.116342 TCTGGGCCTCTTGGTGTCTA 59.884 55.000 4.53 0.00 35.27 2.59
6338 6639 8.034804 ACATCAGCAATACCTTTTAATGGTTTC 58.965 33.333 7.83 0.00 38.88 2.78
6342 6643 6.866480 ACACATCAGCAATACCTTTTAATGG 58.134 36.000 0.00 0.00 0.00 3.16
6377 6678 3.368571 GGAACCACTGCAGCTGGC 61.369 66.667 25.86 15.40 45.13 4.85
6381 6682 2.031163 ACGAGGAACCACTGCAGC 59.969 61.111 15.27 0.00 0.00 5.25
6395 6696 1.135139 GCAATCCTAGAGCTGACACGA 59.865 52.381 0.00 0.00 0.00 4.35
6443 6744 4.155709 GACCATCATCCTCCTCTGTCATA 58.844 47.826 0.00 0.00 0.00 2.15
6452 6753 2.228059 CAAGCATGACCATCATCCTCC 58.772 52.381 0.00 0.00 34.28 4.30
6463 6764 0.109597 CTTTGGACGGCAAGCATGAC 60.110 55.000 0.00 0.00 0.00 3.06
6466 6767 2.639327 GGCTTTGGACGGCAAGCAT 61.639 57.895 14.62 0.00 46.19 3.79
6494 6795 1.982073 GCCTTGTTCGCGAATGGGAG 61.982 60.000 28.74 21.28 38.41 4.30
6554 6855 4.825422 TCTTGCTGTCTCCTTTACTCATG 58.175 43.478 0.00 0.00 0.00 3.07
6560 6861 4.774124 CCATCATCTTGCTGTCTCCTTTA 58.226 43.478 0.00 0.00 0.00 1.85
6571 6872 1.404391 CAGTTGGAGCCATCATCTTGC 59.596 52.381 0.86 0.00 0.00 4.01
6572 6873 1.404391 GCAGTTGGAGCCATCATCTTG 59.596 52.381 0.86 0.00 0.00 3.02
6573 6874 1.284198 AGCAGTTGGAGCCATCATCTT 59.716 47.619 0.86 0.00 0.00 2.40
6594 6895 1.674962 GTGCTCCTCATCATCCTTTGC 59.325 52.381 0.00 0.00 0.00 3.68
6709 7010 3.239449 TCTCCTGTGGCTTTCTTCAGTA 58.761 45.455 0.00 0.00 0.00 2.74
6904 7205 1.011333 CGTTTCGGTGTGAACCTTGT 58.989 50.000 0.00 0.00 35.97 3.16
6962 7263 2.432146 CGGATGATCTCTTGGAGTTGGA 59.568 50.000 0.00 0.00 0.00 3.53
6963 7264 2.432146 TCGGATGATCTCTTGGAGTTGG 59.568 50.000 0.00 0.00 0.00 3.77
6964 7265 3.808466 TCGGATGATCTCTTGGAGTTG 57.192 47.619 0.00 0.00 0.00 3.16
6965 7266 3.494048 GCATCGGATGATCTCTTGGAGTT 60.494 47.826 21.69 0.00 30.49 3.01
6966 7267 2.036992 GCATCGGATGATCTCTTGGAGT 59.963 50.000 21.69 0.00 30.49 3.85
6967 7268 2.686235 GCATCGGATGATCTCTTGGAG 58.314 52.381 21.69 0.00 30.49 3.86
6992 7293 3.532542 GATAGTGCAAGTGTACCCTTCC 58.467 50.000 0.00 0.00 0.00 3.46
7061 7362 2.887568 GGGCAGATGTCACGCTCG 60.888 66.667 0.00 0.00 0.00 5.03
7067 7368 2.678580 TCGACCGGGCAGATGTCA 60.679 61.111 8.76 0.00 0.00 3.58
7083 7384 0.402121 AACTTCTTCCCACAGCCCTC 59.598 55.000 0.00 0.00 0.00 4.30
7190 7491 3.291611 GCCCATGCCCACTTGAAG 58.708 61.111 0.00 0.00 0.00 3.02
7223 7524 1.520787 GTCGCCGGTATGAACCCTG 60.521 63.158 1.90 0.00 43.54 4.45
7250 7551 4.093952 CCTGGCTCGCAGCAAACG 62.094 66.667 9.78 0.00 44.75 3.60
7259 7560 3.947132 CTCTGCACACCCTGGCTCG 62.947 68.421 0.00 0.00 0.00 5.03
7367 7668 8.753175 GTCGCTTCTAGTATACCATAACTTTTG 58.247 37.037 0.00 0.00 0.00 2.44
7492 7794 9.140286 CCAATGATCGAAATTAGATACGTACAT 57.860 33.333 0.00 0.00 0.00 2.29
7494 7796 8.516811 ACCAATGATCGAAATTAGATACGTAC 57.483 34.615 0.00 0.00 0.00 3.67
7735 8054 2.076100 CACCGCAGCAAAAGTATCAGA 58.924 47.619 0.00 0.00 0.00 3.27
7763 8082 7.195374 ACAACTACAGTATCACCATACCATT 57.805 36.000 0.00 0.00 36.26 3.16
7816 8138 1.665916 CGCACAGGGTGACTCACAG 60.666 63.158 11.34 3.21 35.86 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.