AutoCloner

Multiple sequence alignment - TraesCS3A01G412500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G412500	chr3A	100.000	2969	0	0	1	2969	655995928	655992960	0.000000e+00	5483.0
1	TraesCS3A01G412500	chr3A	88.454	1533	107	27	614	2114	655936991	655935497	0.000000e+00	1786.0
2	TraesCS3A01G412500	chr3A	92.586	1160	80	3	961	2114	658186823	658187982	0.000000e+00	1661.0
3	TraesCS3A01G412500	chr3A	87.500	152	18	1	841	992	655987407	655987257	1.090000e-39	174.0
4	TraesCS3A01G412500	chr3A	88.034	117	14	0	575	691	655993276	655993160	3.990000e-29	139.0
5	TraesCS3A01G412500	chr3A	88.034	117	14	0	2653	2769	655995354	655995238	3.990000e-29	139.0
6	TraesCS3A01G412500	chr3D	94.710	2363	87	17	452	2803	520678742	520676407	0.000000e+00	3637.0
7	TraesCS3A01G412500	chr3D	87.574	1513	140	15	600	2086	520703919	520702429	0.000000e+00	1709.0
8	TraesCS3A01G412500	chr3D	87.757	1413	135	13	693	2085	520684435	520683041	0.000000e+00	1616.0
9	TraesCS3A01G412500	chr3D	91.971	1121	84	3	1000	2114	520641870	520640750	0.000000e+00	1567.0
10	TraesCS3A01G412500	chr3D	89.979	469	29	9	1	457	520679296	520678834	9.170000e-165	590.0
11	TraesCS3A01G412500	chr3D	82.405	341	23	15	626	939	520642200	520641870	2.270000e-66	263.0
12	TraesCS3A01G412500	chr3D	90.426	188	14	3	2784	2969	520674965	520674780	8.220000e-61	244.0
13	TraesCS3A01G412500	chr3D	85.906	149	14	4	2653	2801	520678623	520678482	5.130000e-33	152.0
14	TraesCS3A01G412500	chr3D	89.908	109	10	1	586	693	520676549	520676441	3.990000e-29	139.0
15	TraesCS3A01G412500	chr3D	84.615	130	12	6	575	700	520684861	520684736	4.020000e-24	122.0
16	TraesCS3A01G412500	chr3B	93.592	2091	112	13	452	2539	685910660	685908589	0.000000e+00	3099.0
17	TraesCS3A01G412500	chr3B	87.508	1521	119	25	626	2114	685875543	685874062	0.000000e+00	1690.0
18	TraesCS3A01G412500	chr3B	86.810	1539	154	20	575	2086	685980494	685978978	0.000000e+00	1672.0
19	TraesCS3A01G412500	chr3B	86.334	1544	157	22	575	2085	685942038	685940516	0.000000e+00	1633.0
20	TraesCS3A01G412500	chr3B	91.207	1160	96	3	961	2114	685763609	685762450	0.000000e+00	1572.0
21	TraesCS3A01G412500	chr3B	89.041	438	31	8	28	453	685911185	685910753	7.290000e-146	527.0
22	TraesCS3A01G412500	chr3B	83.113	379	20	9	596	951	686044957	686044600	3.720000e-79	305.0
23	TraesCS3A01G412500	chr3B	90.769	195	15	3	2777	2969	685898332	685898139	1.060000e-64	257.0
24	TraesCS3A01G412500	chr3B	94.615	130	7	0	2650	2779	685900652	685900523	5.020000e-48	202.0
25	TraesCS3A01G412500	chr3B	92.241	116	8	1	218	332	686025748	686025633	2.370000e-36	163.0
26	TraesCS3A01G412500	chr3B	89.655	116	11	1	218	332	686045805	686045690	2.380000e-31	147.0
27	TraesCS3A01G412500	chr3B	87.931	116	14	0	578	693	685900646	685900531	1.440000e-28	137.0
28	TraesCS3A01G412500	chr3B	90.909	99	8	1	831	929	685763710	685763613	6.680000e-27	132.0
29	TraesCS3A01G412500	chr3B	90.000	100	6	1	2558	2653	685908471	685908372	3.110000e-25	126.0
30	TraesCS3A01G412500	chr1A	83.019	106	16	2	452	556	3547664	3547768	8.760000e-16	95.3
31	TraesCS3A01G412500	chr5A	78.295	129	26	2	2144	2270	530992139	530992267	6.820000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G412500	chr3A	655992960	655995928	2968	True	1920.333333	5483	92.022667	1	2969	3	chr3A.!!$R3	2968
1	TraesCS3A01G412500	chr3A	655935497	655936991	1494	True	1786.000000	1786	88.454000	614	2114	1	chr3A.!!$R1	1500
2	TraesCS3A01G412500	chr3A	658186823	658187982	1159	False	1661.000000	1661	92.586000	961	2114	1	chr3A.!!$F1	1153
3	TraesCS3A01G412500	chr3D	520702429	520703919	1490	True	1709.000000	1709	87.574000	600	2086	1	chr3D.!!$R1	1486
4	TraesCS3A01G412500	chr3D	520674780	520684861	10081	True	928.571429	3637	89.043000	1	2969	7	chr3D.!!$R3	2968
5	TraesCS3A01G412500	chr3D	520640750	520642200	1450	True	915.000000	1567	87.188000	626	2114	2	chr3D.!!$R2	1488
6	TraesCS3A01G412500	chr3B	685874062	685875543	1481	True	1690.000000	1690	87.508000	626	2114	1	chr3B.!!$R1	1488
7	TraesCS3A01G412500	chr3B	685978978	685980494	1516	True	1672.000000	1672	86.810000	575	2086	1	chr3B.!!$R3	1511
8	TraesCS3A01G412500	chr3B	685940516	685942038	1522	True	1633.000000	1633	86.334000	575	2085	1	chr3B.!!$R2	1510
9	TraesCS3A01G412500	chr3B	685908372	685911185	2813	True	1250.666667	3099	90.877667	28	2653	3	chr3B.!!$R7	2625
10	TraesCS3A01G412500	chr3B	685762450	685763710	1260	True	852.000000	1572	91.058000	831	2114	2	chr3B.!!$R5	1283
11	TraesCS3A01G412500	chr3B	686044600	686045805	1205	True	226.000000	305	86.384000	218	951	2	chr3B.!!$R8	733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
214	222	0.165079	AACGCACGAGCAATTAACCG	59.835	50.0	5.50	0.0	42.27	4.44	F
1119	8031	1.198759	ATGTAGGTGCCGGGTTGAGT	61.199	55.0	2.18	0.0	0.00	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1518	8430	0.464452	CGAAGGGGCTCGGTAGATTT	59.536	55.0	0.0	0.0	35.14	2.17	R
2649	9667	0.388649	ACGGATTGCGTCAGACAGAC	60.389	55.0	0.0	0.0	44.02	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	7.059448	GAGCTACTCAACAAGAAGAAGAATG	57.941	40.000	0.00	0.00	0.00	2.67
25	26	5.411053	AGCTACTCAACAAGAAGAAGAATGC	59.589	40.000	0.00	0.00	0.00	3.56
26	27	5.411053	GCTACTCAACAAGAAGAAGAATGCT	59.589	40.000	0.00	0.00	0.00	3.79
36	37	8.099537	ACAAGAAGAAGAATGCTCTCTTAATCA	58.900	33.333	1.45	0.00	35.76	2.57
42	43	8.431222	AGAAGAATGCTCTCTTAATCAAGCTAT	58.569	33.333	0.00	0.00	35.76	2.97
111	112	5.178252	CGACCATGCATACTGGAATAAGAAG	59.822	44.000	11.80	0.00	37.22	2.85
113	114	6.662755	ACCATGCATACTGGAATAAGAAGAA	58.337	36.000	11.80	0.00	37.22	2.52
201	209	1.978782	GTATGCTCTTTTGCAACGCAC	59.021	47.619	12.32	0.92	46.61	5.34
203	211	1.010125	GCTCTTTTGCAACGCACGA	60.010	52.632	0.00	0.00	38.71	4.35
204	212	0.993746	GCTCTTTTGCAACGCACGAG	60.994	55.000	0.00	0.00	38.71	4.18
214	222	0.165079	AACGCACGAGCAATTAACCG	59.835	50.000	5.50	0.00	42.27	4.44
235	243	4.459685	CCGACTAGAAGAAAAGGTCTCTCA	59.540	45.833	0.00	0.00	34.56	3.27
315	328	1.277557	GTGTGGCTGATCTGGTCTCTT	59.722	52.381	1.46	0.00	0.00	2.85
381	442	6.303839	ACTATGTCTAACACAAACCATGGTT	58.696	36.000	24.86	24.86	38.97	3.67
382	443	5.705609	ATGTCTAACACAAACCATGGTTC	57.294	39.130	29.91	14.48	38.97	3.62
386	447	1.288752	CACAAACCATGGTTCCCGC	59.711	57.895	29.91	0.00	37.35	6.13
388	449	1.969064	CAAACCATGGTTCCCGCGA	60.969	57.895	29.91	0.00	37.35	5.87
391	452	3.124921	CCATGGTTCCCGCGACAC	61.125	66.667	8.23	0.00	0.00	3.67
408	469	4.263016	CGACACGCAACATATACAACATG	58.737	43.478	0.00	0.00	0.00	3.21
410	471	5.276820	CGACACGCAACATATACAACATGAT	60.277	40.000	0.00	0.00	0.00	2.45
415	952	9.106286	CACGCAACATATACAACATGATATTTC	57.894	33.333	0.00	0.00	0.00	2.17
564	1195	5.707298	CCTCATATTTAGAAATGCGGGTCAT	59.293	40.000	0.00	0.00	36.87	3.06
582	1213	5.233988	GGTCATGATAAGCTATGTCTGACC	58.766	45.833	17.00	17.00	38.70	4.02
624	1258	5.283482	CACACGCAACATATACAACACAATG	59.717	40.000	0.00	0.00	0.00	2.82
628	1262	6.362016	ACGCAACATATACAACACAATGTTTG	59.638	34.615	0.00	6.71	38.77	2.93
682	1320	2.434702	ACGACCTCTTCCAACTTGTTCT	59.565	45.455	0.00	0.00	0.00	3.01
695	1639	5.447818	CCAACTTGTTCTCGCTAATCATTCC	60.448	44.000	0.00	0.00	0.00	3.01
740	1684	2.647297	AGCAAAGGAAAGCTGCGC	59.353	55.556	0.00	0.00	40.13	6.09
741	1685	2.802414	GCAAAGGAAAGCTGCGCG	60.802	61.111	0.00	0.00	0.00	6.86
742	1686	2.802414	CAAAGGAAAGCTGCGCGC	60.802	61.111	27.26	27.26	39.57	6.86
886	7782	1.351017	TCTGGTTTCCCTCACATCCAC	59.649	52.381	0.00	0.00	0.00	4.02
1119	8031	1.198759	ATGTAGGTGCCGGGTTGAGT	61.199	55.000	2.18	0.00	0.00	3.41
1224	8136	4.559063	CCAGCCAGCCTCATCCGG	62.559	72.222	0.00	0.00	0.00	5.14
1518	8430	1.298157	CCAACATCGAGAGCGCCAAA	61.298	55.000	2.29	0.00	37.46	3.28
1688	8600	4.500116	GGACGAGGAGACGCTGGC	62.500	72.222	0.00	0.00	36.70	4.85
1875	8787	0.321210	TCAAGAATTTCGCGGCCTCA	60.321	50.000	6.13	0.00	0.00	3.86
1984	8896	6.808008	ATCGATGAATGGGATTGATGTTAC	57.192	37.500	0.00	0.00	0.00	2.50
1987	8899	5.333339	CGATGAATGGGATTGATGTTACGAC	60.333	44.000	0.00	0.00	0.00	4.34
2015	8927	6.201425	GTGAACTCGTTGTCCTTGTGTAAATA	59.799	38.462	0.00	0.00	0.00	1.40
2138	9051	3.249320	GGAGTGTTACAAGAAAACGGGAC	59.751	47.826	0.00	0.00	0.00	4.46
2209	9122	5.296780	TCAAACAGAAAGTGTGGACTTGATC	59.703	40.000	0.00	0.00	41.87	2.92
2371	9286	4.901868	ACTTTCCGTGGAATTGCTAGTAA	58.098	39.130	1.47	0.00	33.79	2.24
2511	9426	3.507162	TTGATGATGTGGACAGGTTGT	57.493	42.857	0.00	0.00	0.00	3.32
2656	9674	8.924511	TGATTAAGGAAAATCAAAGTCTGTCT	57.075	30.769	0.00	0.00	41.67	3.41
2657	9675	8.786898	TGATTAAGGAAAATCAAAGTCTGTCTG	58.213	33.333	0.00	0.00	41.67	3.51
2738	9756	6.068010	GGACCTCTTCTCTTAGATCATCAGA	58.932	44.000	0.00	0.00	0.00	3.27
2752	9770	3.096852	TCATCAGAACGGCCTCTTCTAA	58.903	45.455	11.23	0.00	0.00	2.10
2769	9787	4.431894	TCTAATTTGTTCGCGCTAATCG	57.568	40.909	5.56	0.00	42.12	3.34
2821	11302	1.000496	GGTAGGTAGCAGGCGATGTAC	60.000	57.143	0.00	0.00	0.00	2.90
2822	11303	1.000496	GTAGGTAGCAGGCGATGTACC	60.000	57.143	0.00	0.00	36.55	3.34
2823	11304	1.299926	GGTAGCAGGCGATGTACCG	60.300	63.158	0.00	0.00	30.83	4.02
2863	11346	0.387112	ACAATGGCATGTCAAACGCG	60.387	50.000	3.01	3.53	0.00	6.01
2864	11347	1.444212	AATGGCATGTCAAACGCGC	60.444	52.632	3.01	0.00	0.00	6.86
2884	11367	4.206404	GCGCTTCCACAAAAAGTTTCTAAC	59.794	41.667	0.00	0.00	0.00	2.34
2906	11389	6.969828	ACTCTTTTTATCATGTCCGTCTTC	57.030	37.500	0.00	0.00	0.00	2.87
2911	11394	8.792633	TCTTTTTATCATGTCCGTCTTCAAAAT	58.207	29.630	0.00	0.00	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	6.402011	GCATTCTTCTTCTTGTTGAGTAGCTC	60.402	42.308	0.00	0.00	0.00	4.09
5	6	5.619220	AGAGCATTCTTCTTCTTGTTGAGT	58.381	37.500	0.00	0.00	0.00	3.41
7	8	5.862845	AGAGAGCATTCTTCTTCTTGTTGA	58.137	37.500	0.00	0.00	32.53	3.18
8	9	6.557291	AAGAGAGCATTCTTCTTCTTGTTG	57.443	37.500	0.00	0.00	31.97	3.33
9	10	8.860780	ATTAAGAGAGCATTCTTCTTCTTGTT	57.139	30.769	6.06	0.00	38.35	2.83
10	11	8.099537	TGATTAAGAGAGCATTCTTCTTCTTGT	58.900	33.333	6.06	0.00	38.35	3.16
11	12	8.489990	TGATTAAGAGAGCATTCTTCTTCTTG	57.510	34.615	6.06	0.00	38.35	3.02
12	13	9.165035	CTTGATTAAGAGAGCATTCTTCTTCTT	57.835	33.333	6.06	0.00	38.35	2.52
13	14	7.280652	GCTTGATTAAGAGAGCATTCTTCTTCT	59.719	37.037	0.58	0.00	38.35	2.85
14	15	7.280652	AGCTTGATTAAGAGAGCATTCTTCTTC	59.719	37.037	0.58	5.94	38.35	2.87
15	16	7.111466	AGCTTGATTAAGAGAGCATTCTTCTT	58.889	34.615	0.58	0.85	38.35	2.52
16	17	6.652053	AGCTTGATTAAGAGAGCATTCTTCT	58.348	36.000	0.58	0.00	38.35	2.85
17	18	6.923928	AGCTTGATTAAGAGAGCATTCTTC	57.076	37.500	0.58	0.00	38.35	2.87
18	19	8.977267	AATAGCTTGATTAAGAGAGCATTCTT	57.023	30.769	0.58	7.71	40.39	2.52
19	20	8.209584	TGAATAGCTTGATTAAGAGAGCATTCT	58.790	33.333	0.58	0.00	37.59	2.40
20	21	8.375608	TGAATAGCTTGATTAAGAGAGCATTC	57.624	34.615	0.58	12.76	37.59	2.67
21	22	8.619546	GTTGAATAGCTTGATTAAGAGAGCATT	58.380	33.333	0.58	6.74	37.59	3.56
22	23	7.772292	TGTTGAATAGCTTGATTAAGAGAGCAT	59.228	33.333	0.58	0.43	37.59	3.79
23	24	7.105588	TGTTGAATAGCTTGATTAAGAGAGCA	58.894	34.615	0.58	0.00	37.59	4.26
24	25	7.545362	TGTTGAATAGCTTGATTAAGAGAGC	57.455	36.000	0.58	0.00	35.92	4.09
25	26	9.376075	TCTTGTTGAATAGCTTGATTAAGAGAG	57.624	33.333	0.58	0.00	35.92	3.20
26	27	9.725019	TTCTTGTTGAATAGCTTGATTAAGAGA	57.275	29.630	0.58	0.00	35.92	3.10
36	37	6.944862	ACCTTCTCATTCTTGTTGAATAGCTT	59.055	34.615	0.00	0.00	43.00	3.74
42	43	4.065088	CCGACCTTCTCATTCTTGTTGAA	58.935	43.478	0.00	0.00	39.24	2.69
85	86	2.309528	TTCCAGTATGCATGGTCGTC	57.690	50.000	10.16	0.00	39.01	4.20
87	88	4.631131	TCTTATTCCAGTATGCATGGTCG	58.369	43.478	10.16	0.00	39.01	4.79
111	112	6.744112	TCCTCATGTTGTGGTTGTATTTTTC	58.256	36.000	0.00	0.00	33.07	2.29
113	114	6.916360	ATCCTCATGTTGTGGTTGTATTTT	57.084	33.333	0.00	0.00	33.07	1.82
178	186	3.244976	GCGTTGCAAAAGAGCATACATT	58.755	40.909	0.00	0.00	45.19	2.71
201	209	4.669318	TCTTCTAGTCGGTTAATTGCTCG	58.331	43.478	0.00	0.00	0.00	5.03
203	211	6.371825	CCTTTTCTTCTAGTCGGTTAATTGCT	59.628	38.462	0.00	0.00	0.00	3.91
204	212	6.148976	ACCTTTTCTTCTAGTCGGTTAATTGC	59.851	38.462	0.00	0.00	0.00	3.56
214	222	5.716094	GGTGAGAGACCTTTTCTTCTAGTC	58.284	45.833	0.00	0.00	42.25	2.59
335	355	7.502177	AGTTTATCGTGACTTTGTATGTACG	57.498	36.000	0.00	0.00	0.00	3.67
386	447	3.982127	TGTTGTATATGTTGCGTGTCG	57.018	42.857	0.00	0.00	0.00	4.35
388	449	7.728847	ATATCATGTTGTATATGTTGCGTGT	57.271	32.000	0.00	0.00	0.00	4.49
533	1164	9.214957	CCGCATTTCTAAATATGAGGTGTATTA	57.785	33.333	0.00	0.00	37.07	0.98
540	1171	5.063204	TGACCCGCATTTCTAAATATGAGG	58.937	41.667	0.00	0.00	40.23	3.86
545	1176	7.094805	GCTTATCATGACCCGCATTTCTAAATA	60.095	37.037	0.00	0.00	34.15	1.40
552	1183	2.936202	AGCTTATCATGACCCGCATTT	58.064	42.857	0.00	0.00	34.15	2.32
555	1186	2.368548	ACATAGCTTATCATGACCCGCA	59.631	45.455	0.00	0.00	0.00	5.69
564	1195	5.692115	TTTGGGTCAGACATAGCTTATCA	57.308	39.130	2.17	0.00	0.00	2.15
582	1213	4.160635	GCGGCCACGACGATTTGG	62.161	66.667	2.24	0.00	44.60	3.28
711	1655	2.203195	TTTGCTGCACGAGGCTGT	60.203	55.556	0.00	0.00	45.15	4.40
744	1688	4.261781	GTCGCCTACCGCCTACCG	62.262	72.222	0.00	0.00	36.73	4.02
745	1689	4.261781	CGTCGCCTACCGCCTACC	62.262	72.222	0.00	0.00	36.73	3.18
886	7782	6.014156	AGGGAATGAAGGAATATCGTAGAAGG	60.014	42.308	0.00	0.00	43.58	3.46
1010	7916	1.066858	CAGCTAACGGGAAGCAAGAGA	60.067	52.381	8.35	0.00	42.62	3.10
1224	8136	1.760192	AGCAATCATGGAAGTGGAGC	58.240	50.000	0.00	0.00	0.00	4.70
1398	8310	3.781770	GAGGATGTCGGCGCAGGAG	62.782	68.421	10.83	0.00	0.00	3.69
1494	8406	0.670546	CGCTCTCGATGTTGGTGGTT	60.671	55.000	0.00	0.00	38.10	3.67
1518	8430	0.464452	CGAAGGGGCTCGGTAGATTT	59.536	55.000	0.00	0.00	35.14	2.17
1688	8600	1.927174	GGGTGATTGTGTCGAGATTCG	59.073	52.381	0.00	0.00	42.10	3.34
1875	8787	5.338300	GCTTATGTTCCCCATTTTGACCATT	60.338	40.000	0.00	0.00	34.86	3.16
1963	8875	4.749598	TCGTAACATCAATCCCATTCATCG	59.250	41.667	0.00	0.00	0.00	3.84
1987	8899	2.936498	ACAAGGACAACGAGTTCACAAG	59.064	45.455	0.00	0.00	0.00	3.16
2138	9051	5.786574	GTGTTCGGTTTGTACATGAAATACG	59.213	40.000	0.00	0.00	30.12	3.06
2141	9054	5.763204	AGAGTGTTCGGTTTGTACATGAAAT	59.237	36.000	0.00	0.00	30.12	2.17
2371	9286	9.683069	CAAGCAACAGTTTTGATTTAGAATACT	57.317	29.630	0.00	0.00	0.00	2.12
2570	9498	2.032860	AATGGGCTGAGACCGGATCG	62.033	60.000	9.46	3.85	29.56	3.69
2645	9663	2.158449	GGATTGCGTCAGACAGACTTTG	59.842	50.000	0.41	0.00	45.32	2.77
2649	9667	0.388649	ACGGATTGCGTCAGACAGAC	60.389	55.000	0.00	0.00	44.02	3.51
2653	9671	1.443872	ACGACGGATTGCGTCAGAC	60.444	57.895	26.59	4.50	35.59	3.51
2654	9672	2.959372	ACGACGGATTGCGTCAGA	59.041	55.556	26.59	0.00	35.59	3.27
2686	9704	6.810888	AACGAAATATTGTGTTGCATATGC	57.189	33.333	21.09	21.09	42.50	3.14
2738	9756	3.435671	CGAACAAATTAGAAGAGGCCGTT	59.564	43.478	0.00	0.00	0.00	4.44
2752	9770	5.404366	ACATATACGATTAGCGCGAACAAAT	59.596	36.000	12.10	2.43	46.04	2.32
2794	11275	1.517832	CTGCTACCTACCGCTGCTT	59.482	57.895	0.00	0.00	0.00	3.91
2821	11302	2.893637	ACTTGAGTATTAGCACTGCGG	58.106	47.619	0.00	0.00	0.00	5.69
2822	11303	3.926527	TGAACTTGAGTATTAGCACTGCG	59.073	43.478	0.00	0.00	0.00	5.18
2823	11304	4.690748	TGTGAACTTGAGTATTAGCACTGC	59.309	41.667	0.00	0.00	0.00	4.40
2826	11307	6.546395	CCATTGTGAACTTGAGTATTAGCAC	58.454	40.000	0.00	0.00	0.00	4.40
2863	11346	6.796426	AGAGTTAGAAACTTTTTGTGGAAGC	58.204	36.000	0.00	0.00	43.03	3.86
2864	11347	9.639601	AAAAGAGTTAGAAACTTTTTGTGGAAG	57.360	29.630	8.53	0.00	42.78	3.46
2884	11367	6.968131	TGAAGACGGACATGATAAAAAGAG	57.032	37.500	0.00	0.00	0.00	2.85
2893	11376	7.737972	TTAAGAATTTTGAAGACGGACATGA	57.262	32.000	0.00	0.00	0.00	3.07
2921	11404	8.586570	TCGTGTCAATAATTTCTTTGCAATTT	57.413	26.923	0.00	0.00	0.00	1.82
2923	11406	7.814107	ACATCGTGTCAATAATTTCTTTGCAAT	59.186	29.630	0.00	0.00	0.00	3.56
2924	11407	7.144661	ACATCGTGTCAATAATTTCTTTGCAA	58.855	30.769	0.00	0.00	0.00	4.08
2925	11408	6.676950	ACATCGTGTCAATAATTTCTTTGCA	58.323	32.000	0.00	0.00	0.00	4.08
2926	11409	7.197486	GACATCGTGTCAATAATTTCTTTGC	57.803	36.000	11.62	0.00	46.22	3.68
2942	11425	4.168014	CCCATCAAAATTGTGACATCGTG	58.832	43.478	0.00	0.00	0.00	4.35
2943	11426	3.193267	CCCCATCAAAATTGTGACATCGT	59.807	43.478	0.00	0.00	0.00	3.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.