Multiple sequence alignment - TraesCS3A01G411300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G411300 chr3A 100.000 3140 0 0 1 3140 655571627 655568488 0.000000e+00 5799.0
1 TraesCS3A01G411300 chr3A 96.552 87 2 1 733 818 655570826 655570740 3.260000e-30 143.0
2 TraesCS3A01G411300 chr3A 96.552 87 2 1 802 888 655570895 655570810 3.260000e-30 143.0
3 TraesCS3A01G411300 chr3A 94.231 52 2 1 733 783 655570791 655570740 9.340000e-11 78.7
4 TraesCS3A01G411300 chr3A 94.231 52 2 1 837 888 655570895 655570845 9.340000e-11 78.7
5 TraesCS3A01G411300 chr3A 74.719 178 40 4 1339 1512 701369569 701369745 1.210000e-09 75.0
6 TraesCS3A01G411300 chr3B 91.861 2187 122 17 960 3140 684514034 684511898 0.000000e+00 3001.0
7 TraesCS3A01G411300 chr3B 86.211 1755 169 28 1392 3131 684638628 684636932 0.000000e+00 1832.0
8 TraesCS3A01G411300 chr3B 87.751 1445 123 32 857 2287 685393409 685394813 0.000000e+00 1639.0
9 TraesCS3A01G411300 chr3B 86.581 939 89 16 2207 3140 685394806 685395712 0.000000e+00 1002.0
10 TraesCS3A01G411300 chr3B 73.935 1174 251 39 991 2141 685630646 685631787 3.740000e-114 422.0
11 TraesCS3A01G411300 chr3B 73.850 1174 252 39 991 2141 685659141 685660282 1.740000e-112 416.0
12 TraesCS3A01G411300 chr3B 82.051 234 16 7 265 497 685392986 685393194 3.220000e-40 176.0
13 TraesCS3A01G411300 chr3B 80.488 246 25 12 559 783 685393196 685393439 1.940000e-37 167.0
14 TraesCS3A01G411300 chr3D 94.887 1682 82 2 1115 2794 520097641 520095962 0.000000e+00 2627.0
15 TraesCS3A01G411300 chr3D 87.352 1439 138 26 857 2287 520426457 520427859 0.000000e+00 1609.0
16 TraesCS3A01G411300 chr3D 88.584 946 83 13 2207 3140 520427924 520428856 0.000000e+00 1125.0
17 TraesCS3A01G411300 chr3D 76.995 1717 292 67 1044 2698 579398546 579400221 0.000000e+00 887.0
18 TraesCS3A01G411300 chr3D 95.467 353 15 1 2789 3140 520082573 520082221 2.110000e-156 562.0
19 TraesCS3A01G411300 chr3D 74.689 1126 235 41 1030 2141 520595044 520596133 3.690000e-124 455.0
20 TraesCS3A01G411300 chr3D 73.931 1193 233 53 990 2140 565641908 565643064 2.920000e-110 409.0
21 TraesCS3A01G411300 chr3D 94.737 228 6 2 892 1119 520150779 520150558 1.790000e-92 350.0
22 TraesCS3A01G411300 chr3D 82.902 386 60 5 991 1372 520080532 520080149 3.000000e-90 342.0
23 TraesCS3A01G411300 chr3D 75.297 757 160 20 1402 2140 567664402 567663655 1.400000e-88 337.0
24 TraesCS3A01G411300 chr3D 82.143 336 50 9 991 1321 579582808 579582478 2.380000e-71 279.0
25 TraesCS3A01G411300 chr3D 79.899 398 44 16 265 651 520378394 520378766 3.110000e-65 259.0
26 TraesCS3A01G411300 chr3D 73.289 745 172 18 1402 2134 566743056 566743785 6.720000e-62 248.0
27 TraesCS3A01G411300 chr3D 74.671 608 130 16 1542 2134 568017940 568018538 6.720000e-62 248.0
28 TraesCS3A01G411300 chr3D 74.753 507 113 13 1640 2140 567371520 567372017 2.450000e-51 213.0
29 TraesCS3A01G411300 chr3D 73.754 602 131 19 1553 2133 568111385 568111980 8.820000e-51 211.0
30 TraesCS3A01G411300 chr3D 86.000 100 12 2 2435 2533 566910208 566910110 4.280000e-19 106.0
31 TraesCS3A01G411300 chr3D 86.076 79 4 3 710 782 520426409 520426486 9.340000e-11 78.7
32 TraesCS3A01G411300 chr2A 75.650 731 155 10 1401 2112 45080417 45081143 3.000000e-90 342.0
33 TraesCS3A01G411300 chrUn 73.576 1018 193 38 1140 2140 41197522 41196564 1.410000e-83 320.0
34 TraesCS3A01G411300 chrUn 75.667 600 127 13 1548 2133 40962866 40963460 6.630000e-72 281.0
35 TraesCS3A01G411300 chrUn 75.667 600 127 13 1548 2133 326502003 326502597 6.630000e-72 281.0
36 TraesCS3A01G411300 chrUn 73.052 757 171 29 1403 2140 340248886 340248144 1.460000e-58 237.0
37 TraesCS3A01G411300 chr5A 89.157 83 9 0 2535 2617 16491618 16491700 1.540000e-18 104.0
38 TraesCS3A01G411300 chr1A 82.353 85 12 3 39 123 388492870 388492951 1.560000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G411300 chr3A 655568488 655571627 3139 True 1248.480000 5799 96.313200 1 3140 5 chr3A.!!$R1 3139
1 TraesCS3A01G411300 chr3B 684511898 684514034 2136 True 3001.000000 3001 91.861000 960 3140 1 chr3B.!!$R1 2180
2 TraesCS3A01G411300 chr3B 684636932 684638628 1696 True 1832.000000 1832 86.211000 1392 3131 1 chr3B.!!$R2 1739
3 TraesCS3A01G411300 chr3B 685392986 685395712 2726 False 746.000000 1639 84.217750 265 3140 4 chr3B.!!$F3 2875
4 TraesCS3A01G411300 chr3B 685630646 685631787 1141 False 422.000000 422 73.935000 991 2141 1 chr3B.!!$F1 1150
5 TraesCS3A01G411300 chr3B 685659141 685660282 1141 False 416.000000 416 73.850000 991 2141 1 chr3B.!!$F2 1150
6 TraesCS3A01G411300 chr3D 520095962 520097641 1679 True 2627.000000 2627 94.887000 1115 2794 1 chr3D.!!$R1 1679
7 TraesCS3A01G411300 chr3D 520426409 520428856 2447 False 937.566667 1609 87.337333 710 3140 3 chr3D.!!$F9 2430
8 TraesCS3A01G411300 chr3D 579398546 579400221 1675 False 887.000000 887 76.995000 1044 2698 1 chr3D.!!$F8 1654
9 TraesCS3A01G411300 chr3D 520595044 520596133 1089 False 455.000000 455 74.689000 1030 2141 1 chr3D.!!$F2 1111
10 TraesCS3A01G411300 chr3D 520080149 520082573 2424 True 452.000000 562 89.184500 991 3140 2 chr3D.!!$R6 2149
11 TraesCS3A01G411300 chr3D 565641908 565643064 1156 False 409.000000 409 73.931000 990 2140 1 chr3D.!!$F3 1150
12 TraesCS3A01G411300 chr3D 567663655 567664402 747 True 337.000000 337 75.297000 1402 2140 1 chr3D.!!$R4 738
13 TraesCS3A01G411300 chr3D 566743056 566743785 729 False 248.000000 248 73.289000 1402 2134 1 chr3D.!!$F4 732
14 TraesCS3A01G411300 chr3D 568017940 568018538 598 False 248.000000 248 74.671000 1542 2134 1 chr3D.!!$F6 592
15 TraesCS3A01G411300 chr3D 568111385 568111980 595 False 211.000000 211 73.754000 1553 2133 1 chr3D.!!$F7 580
16 TraesCS3A01G411300 chr2A 45080417 45081143 726 False 342.000000 342 75.650000 1401 2112 1 chr2A.!!$F1 711
17 TraesCS3A01G411300 chrUn 41196564 41197522 958 True 320.000000 320 73.576000 1140 2140 1 chrUn.!!$R1 1000
18 TraesCS3A01G411300 chrUn 40962866 40963460 594 False 281.000000 281 75.667000 1548 2133 1 chrUn.!!$F1 585
19 TraesCS3A01G411300 chrUn 326502003 326502597 594 False 281.000000 281 75.667000 1548 2133 1 chrUn.!!$F2 585
20 TraesCS3A01G411300 chrUn 340248144 340248886 742 True 237.000000 237 73.052000 1403 2140 1 chrUn.!!$R2 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 970 0.030369 CGTCGCTACCATACCACTCC 59.97 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 3339 0.942252 GTCGTTCAGAACCACAACCC 59.058 55.0 7.76 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.672673 ACAATAACTAAGAACTTGATATGCTGT 57.327 29.630 0.00 0.00 0.00 4.40
44 45 9.539825 AAGAACTTGATATGCTGTTCTATAGTG 57.460 33.333 7.50 0.00 45.45 2.74
45 46 7.655328 AGAACTTGATATGCTGTTCTATAGTGC 59.345 37.037 5.56 1.87 44.70 4.40
47 48 7.504403 ACTTGATATGCTGTTCTATAGTGCTT 58.496 34.615 0.00 2.53 0.00 3.91
48 49 7.440556 ACTTGATATGCTGTTCTATAGTGCTTG 59.559 37.037 0.00 0.00 0.00 4.01
50 51 7.500141 TGATATGCTGTTCTATAGTGCTTGAA 58.500 34.615 0.00 0.00 0.00 2.69
51 52 7.986889 TGATATGCTGTTCTATAGTGCTTGAAA 59.013 33.333 0.00 0.00 0.00 2.69
52 53 8.915057 ATATGCTGTTCTATAGTGCTTGAAAT 57.085 30.769 0.00 0.00 0.00 2.17
53 54 7.636150 ATGCTGTTCTATAGTGCTTGAAATT 57.364 32.000 0.00 0.00 0.00 1.82
55 56 5.741040 GCTGTTCTATAGTGCTTGAAATTGC 59.259 40.000 0.00 0.00 0.00 3.56
56 57 6.623549 GCTGTTCTATAGTGCTTGAAATTGCA 60.624 38.462 0.00 0.00 36.79 4.08
57 58 7.213216 TGTTCTATAGTGCTTGAAATTGCAA 57.787 32.000 0.00 0.00 41.10 4.08
58 59 7.083858 TGTTCTATAGTGCTTGAAATTGCAAC 58.916 34.615 0.00 0.00 41.10 4.17
59 60 7.040478 TGTTCTATAGTGCTTGAAATTGCAACT 60.040 33.333 0.00 0.00 41.10 3.16
60 61 6.845302 TCTATAGTGCTTGAAATTGCAACTG 58.155 36.000 0.00 0.00 41.10 3.16
61 62 3.102052 AGTGCTTGAAATTGCAACTGG 57.898 42.857 0.00 0.00 41.10 4.00
62 63 2.694628 AGTGCTTGAAATTGCAACTGGA 59.305 40.909 0.00 0.00 41.10 3.86
63 64 2.796593 GTGCTTGAAATTGCAACTGGAC 59.203 45.455 0.00 0.00 41.10 4.02
64 65 2.429971 TGCTTGAAATTGCAACTGGACA 59.570 40.909 0.00 0.00 36.15 4.02
65 66 2.796593 GCTTGAAATTGCAACTGGACAC 59.203 45.455 0.00 0.00 0.00 3.67
67 68 1.336440 TGAAATTGCAACTGGACACCG 59.664 47.619 0.00 0.00 0.00 4.94
69 70 0.179004 AATTGCAACTGGACACCGGA 60.179 50.000 9.46 0.00 33.36 5.14
70 71 0.606401 ATTGCAACTGGACACCGGAG 60.606 55.000 9.46 1.26 33.36 4.63
71 72 1.691195 TTGCAACTGGACACCGGAGA 61.691 55.000 9.46 0.00 33.36 3.71
73 74 0.534203 GCAACTGGACACCGGAGAAA 60.534 55.000 9.46 0.00 33.36 2.52
74 75 1.961793 CAACTGGACACCGGAGAAAA 58.038 50.000 9.46 0.00 33.36 2.29
75 76 2.294074 CAACTGGACACCGGAGAAAAA 58.706 47.619 9.46 0.00 33.36 1.94
76 77 2.256117 ACTGGACACCGGAGAAAAAG 57.744 50.000 9.46 0.35 33.36 2.27
78 79 0.181587 TGGACACCGGAGAAAAAGCA 59.818 50.000 9.46 0.00 0.00 3.91
79 80 1.314730 GGACACCGGAGAAAAAGCAA 58.685 50.000 9.46 0.00 0.00 3.91
80 81 1.001706 GGACACCGGAGAAAAAGCAAC 60.002 52.381 9.46 0.00 0.00 4.17
81 82 1.947456 GACACCGGAGAAAAAGCAACT 59.053 47.619 9.46 0.00 0.00 3.16
82 83 1.676006 ACACCGGAGAAAAAGCAACTG 59.324 47.619 9.46 0.00 0.00 3.16
83 84 0.668535 ACCGGAGAAAAAGCAACTGC 59.331 50.000 9.46 0.00 42.49 4.40
84 85 0.667993 CCGGAGAAAAAGCAACTGCA 59.332 50.000 0.00 0.00 45.16 4.41
85 86 1.270550 CCGGAGAAAAAGCAACTGCAT 59.729 47.619 0.00 0.00 45.16 3.96
86 87 2.322161 CGGAGAAAAAGCAACTGCATG 58.678 47.619 4.22 0.00 45.16 4.06
87 88 2.680577 GGAGAAAAAGCAACTGCATGG 58.319 47.619 4.22 0.00 45.16 3.66
90 91 4.158394 GGAGAAAAAGCAACTGCATGGATA 59.842 41.667 4.22 0.00 45.16 2.59
93 94 6.103997 AGAAAAAGCAACTGCATGGATAATG 58.896 36.000 4.22 0.00 45.16 1.90
114 115 4.049546 GCATCAGCAGCCAAATAATGAA 57.950 40.909 0.00 0.00 41.58 2.57
115 116 3.800506 GCATCAGCAGCCAAATAATGAAC 59.199 43.478 0.00 0.00 41.58 3.18
116 117 4.441079 GCATCAGCAGCCAAATAATGAACT 60.441 41.667 0.00 0.00 41.58 3.01
117 118 5.221106 GCATCAGCAGCCAAATAATGAACTA 60.221 40.000 0.00 0.00 41.58 2.24
118 119 6.436261 CATCAGCAGCCAAATAATGAACTAG 58.564 40.000 0.00 0.00 0.00 2.57
119 120 4.336433 TCAGCAGCCAAATAATGAACTAGC 59.664 41.667 0.00 0.00 0.00 3.42
120 121 4.096833 CAGCAGCCAAATAATGAACTAGCA 59.903 41.667 0.00 0.00 0.00 3.49
121 122 4.891756 AGCAGCCAAATAATGAACTAGCAT 59.108 37.500 0.00 0.00 0.00 3.79
122 123 6.016860 CAGCAGCCAAATAATGAACTAGCATA 60.017 38.462 0.00 0.00 0.00 3.14
123 124 6.718454 AGCAGCCAAATAATGAACTAGCATAT 59.282 34.615 0.00 0.00 0.00 1.78
124 125 7.232127 AGCAGCCAAATAATGAACTAGCATATT 59.768 33.333 0.00 0.00 0.00 1.28
125 126 8.514594 GCAGCCAAATAATGAACTAGCATATTA 58.485 33.333 0.00 0.00 0.00 0.98
127 128 8.734386 AGCCAAATAATGAACTAGCATATTAGC 58.266 33.333 0.00 0.00 0.00 3.09
128 129 8.514594 GCCAAATAATGAACTAGCATATTAGCA 58.485 33.333 0.00 0.00 36.85 3.49
132 133 9.964354 AATAATGAACTAGCATATTAGCATGGA 57.036 29.630 0.00 0.00 36.85 3.41
133 134 9.964354 ATAATGAACTAGCATATTAGCATGGAA 57.036 29.630 0.00 0.00 36.85 3.53
134 135 8.696043 AATGAACTAGCATATTAGCATGGAAA 57.304 30.769 0.00 0.00 36.85 3.13
138 139 6.000219 ACTAGCATATTAGCATGGAAACTGG 59.000 40.000 0.00 0.00 36.85 4.00
139 140 5.052693 AGCATATTAGCATGGAAACTGGA 57.947 39.130 0.00 0.00 36.85 3.86
140 141 5.068636 AGCATATTAGCATGGAAACTGGAG 58.931 41.667 0.00 0.00 36.85 3.86
141 142 4.823989 GCATATTAGCATGGAAACTGGAGT 59.176 41.667 0.00 0.00 0.00 3.85
144 145 7.013274 GCATATTAGCATGGAAACTGGAGTAAA 59.987 37.037 0.00 0.00 0.00 2.01
145 146 6.759497 ATTAGCATGGAAACTGGAGTAAAC 57.241 37.500 0.00 0.00 0.00 2.01
146 147 4.098914 AGCATGGAAACTGGAGTAAACA 57.901 40.909 0.00 0.00 0.00 2.83
147 148 4.074970 AGCATGGAAACTGGAGTAAACAG 58.925 43.478 0.00 0.00 41.64 3.16
149 150 3.569194 TGGAAACTGGAGTAAACAGCA 57.431 42.857 0.00 0.00 39.55 4.41
150 151 3.892284 TGGAAACTGGAGTAAACAGCAA 58.108 40.909 0.00 0.00 39.55 3.91
151 152 4.274147 TGGAAACTGGAGTAAACAGCAAA 58.726 39.130 0.00 0.00 39.55 3.68
152 153 4.707448 TGGAAACTGGAGTAAACAGCAAAA 59.293 37.500 0.00 0.00 39.55 2.44
154 155 6.547880 TGGAAACTGGAGTAAACAGCAAAATA 59.452 34.615 0.00 0.00 39.55 1.40
155 156 6.861572 GGAAACTGGAGTAAACAGCAAAATAC 59.138 38.462 0.00 0.00 39.55 1.89
156 157 5.959618 ACTGGAGTAAACAGCAAAATACC 57.040 39.130 0.00 0.00 39.55 2.73
157 158 5.381757 ACTGGAGTAAACAGCAAAATACCA 58.618 37.500 0.00 0.00 39.55 3.25
160 161 6.007076 TGGAGTAAACAGCAAAATACCATGA 58.993 36.000 0.00 0.00 0.00 3.07
161 162 6.072175 TGGAGTAAACAGCAAAATACCATGAC 60.072 38.462 0.00 0.00 0.00 3.06
162 163 6.072175 GGAGTAAACAGCAAAATACCATGACA 60.072 38.462 0.00 0.00 0.00 3.58
163 164 7.283625 AGTAAACAGCAAAATACCATGACAA 57.716 32.000 0.00 0.00 0.00 3.18
164 165 7.721402 AGTAAACAGCAAAATACCATGACAAA 58.279 30.769 0.00 0.00 0.00 2.83
165 166 8.200792 AGTAAACAGCAAAATACCATGACAAAA 58.799 29.630 0.00 0.00 0.00 2.44
168 169 6.581712 ACAGCAAAATACCATGACAAAACTT 58.418 32.000 0.00 0.00 0.00 2.66
169 170 7.721402 ACAGCAAAATACCATGACAAAACTTA 58.279 30.769 0.00 0.00 0.00 2.24
170 171 8.200792 ACAGCAAAATACCATGACAAAACTTAA 58.799 29.630 0.00 0.00 0.00 1.85
172 173 9.606631 AGCAAAATACCATGACAAAACTTAAAA 57.393 25.926 0.00 0.00 0.00 1.52
199 200 9.672673 ACTACTACTATTCGGTACTTTTACAGA 57.327 33.333 0.00 0.00 31.37 3.41
222 223 9.491675 CAGAATTATCATATGAGCAGAAGAGTT 57.508 33.333 11.78 0.00 0.00 3.01
241 242 8.649973 AAGAGTTACTTCTTAATAATCGGCAG 57.350 34.615 0.00 0.00 35.70 4.85
242 243 8.008513 AGAGTTACTTCTTAATAATCGGCAGA 57.991 34.615 0.00 0.00 0.00 4.26
243 244 8.475639 AGAGTTACTTCTTAATAATCGGCAGAA 58.524 33.333 0.00 0.00 0.00 3.02
245 246 8.258708 AGTTACTTCTTAATAATCGGCAGAACT 58.741 33.333 0.00 0.00 0.00 3.01
246 247 9.525409 GTTACTTCTTAATAATCGGCAGAACTA 57.475 33.333 0.00 0.00 0.00 2.24
248 249 7.553334 ACTTCTTAATAATCGGCAGAACTACA 58.447 34.615 0.00 0.00 0.00 2.74
249 250 8.038944 ACTTCTTAATAATCGGCAGAACTACAA 58.961 33.333 0.00 0.00 0.00 2.41
254 255 2.572191 TCGGCAGAACTACAATACCG 57.428 50.000 0.00 0.00 40.47 4.02
255 256 2.093890 TCGGCAGAACTACAATACCGA 58.906 47.619 0.00 0.00 45.18 4.69
256 257 2.492881 TCGGCAGAACTACAATACCGAA 59.507 45.455 0.00 0.00 44.48 4.30
257 258 2.601763 CGGCAGAACTACAATACCGAAC 59.398 50.000 0.00 0.00 41.61 3.95
258 259 3.675228 CGGCAGAACTACAATACCGAACT 60.675 47.826 0.00 0.00 41.61 3.01
259 260 3.864003 GGCAGAACTACAATACCGAACTC 59.136 47.826 0.00 0.00 0.00 3.01
260 261 3.546670 GCAGAACTACAATACCGAACTCG 59.453 47.826 0.00 0.00 39.44 4.18
261 262 3.546670 CAGAACTACAATACCGAACTCGC 59.453 47.826 0.00 0.00 38.18 5.03
262 263 2.573941 ACTACAATACCGAACTCGCC 57.426 50.000 0.00 0.00 38.18 5.54
263 264 1.202222 ACTACAATACCGAACTCGCCG 60.202 52.381 0.00 0.00 38.18 6.46
265 266 0.244450 ACAATACCGAACTCGCCGAA 59.756 50.000 0.00 0.00 38.18 4.30
266 267 0.921347 CAATACCGAACTCGCCGAAG 59.079 55.000 0.00 0.00 38.18 3.79
268 269 0.813184 ATACCGAACTCGCCGAAGAA 59.187 50.000 0.00 0.00 38.18 2.52
269 270 0.597568 TACCGAACTCGCCGAAGAAA 59.402 50.000 0.00 0.00 38.18 2.52
270 271 0.249573 ACCGAACTCGCCGAAGAAAA 60.250 50.000 0.00 0.00 38.18 2.29
271 272 0.163146 CCGAACTCGCCGAAGAAAAC 59.837 55.000 0.00 0.00 38.18 2.43
272 273 1.137513 CGAACTCGCCGAAGAAAACT 58.862 50.000 0.00 0.00 0.00 2.66
273 274 2.322161 CGAACTCGCCGAAGAAAACTA 58.678 47.619 0.00 0.00 0.00 2.24
274 275 2.727798 CGAACTCGCCGAAGAAAACTAA 59.272 45.455 0.00 0.00 0.00 2.24
282 283 3.059120 GCCGAAGAAAACTAACCTCACAC 60.059 47.826 0.00 0.00 0.00 3.82
291 292 7.496591 AGAAAACTAACCTCACACGTAAATTGA 59.503 33.333 0.00 0.00 0.00 2.57
292 293 6.780706 AACTAACCTCACACGTAAATTGAG 57.219 37.500 8.11 8.11 37.17 3.02
313 314 1.074395 CTACTTCCTCCCCCTCCCC 60.074 68.421 0.00 0.00 0.00 4.81
314 315 1.551964 TACTTCCTCCCCCTCCCCT 60.552 63.158 0.00 0.00 0.00 4.79
316 317 1.230314 CTTCCTCCCCCTCCCCTTT 60.230 63.158 0.00 0.00 0.00 3.11
320 321 1.443729 CCTCCCCCTCCCCTTTGTTT 61.444 60.000 0.00 0.00 0.00 2.83
321 322 0.039764 CTCCCCCTCCCCTTTGTTTC 59.960 60.000 0.00 0.00 0.00 2.78
323 324 0.039764 CCCCCTCCCCTTTGTTTCTC 59.960 60.000 0.00 0.00 0.00 2.87
325 326 1.547901 CCCCTCCCCTTTGTTTCTCAC 60.548 57.143 0.00 0.00 0.00 3.51
326 327 1.144913 CCCTCCCCTTTGTTTCTCACA 59.855 52.381 0.00 0.00 0.00 3.58
329 330 4.508405 CCCTCCCCTTTGTTTCTCACATTA 60.508 45.833 0.00 0.00 34.43 1.90
341 342 4.760530 TCTCACATTACATCTTCCCAGG 57.239 45.455 0.00 0.00 0.00 4.45
372 373 4.082523 ACGTCATCCACTGCCCGG 62.083 66.667 0.00 0.00 0.00 5.73
375 376 3.399181 TCATCCACTGCCCGGTCC 61.399 66.667 0.00 0.00 0.00 4.46
388 389 4.083862 GGTCCGGCACCACCTCTC 62.084 72.222 15.65 0.00 45.98 3.20
389 390 4.083862 GTCCGGCACCACCTCTCC 62.084 72.222 0.00 0.00 35.61 3.71
449 450 1.519408 TCTTCACACTTTTAGCCCGC 58.481 50.000 0.00 0.00 0.00 6.13
507 508 0.603975 GTGAGTTCACCCAGGAGTGC 60.604 60.000 0.72 0.00 40.85 4.40
508 509 1.003233 GAGTTCACCCAGGAGTGCC 60.003 63.158 3.72 0.00 37.68 5.01
509 510 1.768684 GAGTTCACCCAGGAGTGCCA 61.769 60.000 3.72 0.00 37.68 4.92
510 511 1.136329 AGTTCACCCAGGAGTGCCAT 61.136 55.000 3.72 0.00 37.68 4.40
511 512 0.962356 GTTCACCCAGGAGTGCCATG 60.962 60.000 3.72 0.00 37.68 3.66
513 514 0.915872 TCACCCAGGAGTGCCATGAT 60.916 55.000 0.00 0.00 37.68 2.45
514 515 0.465097 CACCCAGGAGTGCCATGATC 60.465 60.000 0.00 0.00 36.29 2.92
515 516 0.915872 ACCCAGGAGTGCCATGATCA 60.916 55.000 0.00 0.00 36.29 2.92
516 517 0.465097 CCCAGGAGTGCCATGATCAC 60.465 60.000 0.00 9.23 36.29 3.06
517 518 0.545171 CCAGGAGTGCCATGATCACT 59.455 55.000 16.90 16.90 46.46 3.41
519 520 2.371179 CCAGGAGTGCCATGATCACTAT 59.629 50.000 16.91 8.98 44.09 2.12
520 521 3.400255 CAGGAGTGCCATGATCACTATG 58.600 50.000 16.91 14.86 44.09 2.23
522 523 4.039609 CAGGAGTGCCATGATCACTATGTA 59.960 45.833 16.91 0.00 44.09 2.29
524 525 4.039730 GGAGTGCCATGATCACTATGTAGT 59.960 45.833 16.91 0.00 44.09 2.73
525 526 5.243954 GGAGTGCCATGATCACTATGTAGTA 59.756 44.000 16.91 0.00 44.09 1.82
526 527 6.338214 AGTGCCATGATCACTATGTAGTAG 57.662 41.667 15.82 0.00 42.45 2.57
527 528 4.926238 GTGCCATGATCACTATGTAGTAGC 59.074 45.833 0.00 0.00 34.13 3.58
529 530 4.738124 CCATGATCACTATGTAGTAGCCG 58.262 47.826 0.00 0.00 34.13 5.52
530 531 3.917329 TGATCACTATGTAGTAGCCGC 57.083 47.619 0.00 0.00 34.13 6.53
531 532 2.557056 TGATCACTATGTAGTAGCCGCC 59.443 50.000 0.00 0.00 34.13 6.13
533 534 2.228059 TCACTATGTAGTAGCCGCCTC 58.772 52.381 0.00 0.00 34.13 4.70
534 535 1.069159 CACTATGTAGTAGCCGCCTCG 60.069 57.143 0.00 0.00 34.13 4.63
535 536 1.236628 CTATGTAGTAGCCGCCTCGT 58.763 55.000 0.00 0.00 0.00 4.18
536 537 1.607628 CTATGTAGTAGCCGCCTCGTT 59.392 52.381 0.00 0.00 0.00 3.85
537 538 0.102481 ATGTAGTAGCCGCCTCGTTG 59.898 55.000 0.00 0.00 0.00 4.10
538 539 1.877165 GTAGTAGCCGCCTCGTTGC 60.877 63.158 0.00 0.00 0.00 4.17
610 611 2.183811 CTCACGCCTGCTCCTCTG 59.816 66.667 0.00 0.00 0.00 3.35
660 661 1.372087 CCTCGCTGACAGCCATTTCC 61.372 60.000 21.55 0.00 38.18 3.13
668 669 4.562143 GCTGACAGCCATTTCCTTTCATTT 60.562 41.667 17.01 0.00 34.48 2.32
669 670 5.544650 CTGACAGCCATTTCCTTTCATTTT 58.455 37.500 0.00 0.00 0.00 1.82
670 671 5.927819 TGACAGCCATTTCCTTTCATTTTT 58.072 33.333 0.00 0.00 0.00 1.94
686 687 7.463469 TTCATTTTTCCTTCGCTTTCTTTTC 57.537 32.000 0.00 0.00 0.00 2.29
687 688 6.568869 TCATTTTTCCTTCGCTTTCTTTTCA 58.431 32.000 0.00 0.00 0.00 2.69
688 689 6.697019 TCATTTTTCCTTCGCTTTCTTTTCAG 59.303 34.615 0.00 0.00 0.00 3.02
690 691 2.504367 TCCTTCGCTTTCTTTTCAGGG 58.496 47.619 0.00 0.00 0.00 4.45
691 692 1.541588 CCTTCGCTTTCTTTTCAGGGG 59.458 52.381 0.00 0.00 0.00 4.79
693 694 2.185004 TCGCTTTCTTTTCAGGGGAG 57.815 50.000 0.00 0.00 0.00 4.30
694 695 1.420138 TCGCTTTCTTTTCAGGGGAGT 59.580 47.619 0.00 0.00 0.00 3.85
695 696 2.158667 TCGCTTTCTTTTCAGGGGAGTT 60.159 45.455 0.00 0.00 0.00 3.01
701 702 6.630413 GCTTTCTTTTCAGGGGAGTTTCTTTT 60.630 38.462 0.00 0.00 0.00 2.27
703 704 5.515106 TCTTTTCAGGGGAGTTTCTTTTCA 58.485 37.500 0.00 0.00 0.00 2.69
707 708 1.429299 AGGGGAGTTTCTTTTCAGGGG 59.571 52.381 0.00 0.00 0.00 4.79
752 768 2.115910 CAAGCCCAGCCCAGTTGA 59.884 61.111 0.00 0.00 0.00 3.18
753 769 1.531365 CAAGCCCAGCCCAGTTGAA 60.531 57.895 0.00 0.00 0.00 2.69
755 771 0.901580 AAGCCCAGCCCAGTTGAATG 60.902 55.000 0.00 0.00 0.00 2.67
757 773 1.598701 GCCCAGCCCAGTTGAATGAC 61.599 60.000 0.00 0.00 0.00 3.06
760 776 1.962807 CCAGCCCAGTTGAATGACAAA 59.037 47.619 0.00 0.00 40.36 2.83
764 780 2.229784 GCCCAGTTGAATGACAAAGAGG 59.770 50.000 0.00 0.00 40.36 3.69
766 782 2.095567 CCAGTTGAATGACAAAGAGGCG 60.096 50.000 0.00 0.00 40.36 5.52
768 784 0.881118 TTGAATGACAAAGAGGCGGC 59.119 50.000 0.00 0.00 35.39 6.53
769 785 0.960364 TGAATGACAAAGAGGCGGCC 60.960 55.000 12.11 12.11 0.00 6.13
771 787 0.618458 AATGACAAAGAGGCGGCCTA 59.382 50.000 23.92 4.40 31.76 3.93
774 790 2.514824 CAAAGAGGCGGCCTAGGC 60.515 66.667 26.55 26.55 41.06 3.93
789 805 4.759205 GGCCCAGCCCGGTTGAAT 62.759 66.667 2.20 0.00 44.06 2.57
790 806 3.451894 GCCCAGCCCGGTTGAATG 61.452 66.667 2.20 0.00 0.00 2.67
791 807 2.354729 CCCAGCCCGGTTGAATGA 59.645 61.111 2.20 0.00 0.00 2.57
792 808 2.046285 CCCAGCCCGGTTGAATGAC 61.046 63.158 2.20 0.00 0.00 3.06
793 809 1.303236 CCAGCCCGGTTGAATGACA 60.303 57.895 2.20 0.00 0.00 3.58
794 810 0.893270 CCAGCCCGGTTGAATGACAA 60.893 55.000 2.20 0.00 36.02 3.18
795 811 0.958091 CAGCCCGGTTGAATGACAAA 59.042 50.000 0.00 0.00 40.36 2.83
796 812 1.068333 CAGCCCGGTTGAATGACAAAG 60.068 52.381 0.00 0.00 40.36 2.77
797 813 1.202879 AGCCCGGTTGAATGACAAAGA 60.203 47.619 0.00 0.00 40.36 2.52
798 814 1.200020 GCCCGGTTGAATGACAAAGAG 59.800 52.381 0.00 0.00 40.36 2.85
799 815 1.812571 CCCGGTTGAATGACAAAGAGG 59.187 52.381 0.00 0.00 40.36 3.69
800 816 1.200020 CCGGTTGAATGACAAAGAGGC 59.800 52.381 0.00 0.00 40.36 4.70
801 817 1.135972 CGGTTGAATGACAAAGAGGCG 60.136 52.381 0.00 0.00 40.36 5.52
802 818 1.200020 GGTTGAATGACAAAGAGGCGG 59.800 52.381 0.00 0.00 40.36 6.13
803 819 0.881118 TTGAATGACAAAGAGGCGGC 59.119 50.000 0.00 0.00 35.39 6.53
804 820 0.960364 TGAATGACAAAGAGGCGGCC 60.960 55.000 12.11 12.11 0.00 6.13
805 821 0.678048 GAATGACAAAGAGGCGGCCT 60.678 55.000 24.13 24.13 36.03 5.19
806 822 0.618458 AATGACAAAGAGGCGGCCTA 59.382 50.000 23.92 4.40 31.76 3.93
807 823 0.179000 ATGACAAAGAGGCGGCCTAG 59.821 55.000 23.92 14.50 31.76 3.02
809 825 2.514824 CAAAGAGGCGGCCTAGGC 60.515 66.667 26.55 26.55 41.06 3.93
824 840 4.759205 GGCCCAGCCCGGTTGAAT 62.759 66.667 2.20 0.00 44.06 2.57
825 841 3.451894 GCCCAGCCCGGTTGAATG 61.452 66.667 2.20 0.00 0.00 2.67
826 842 2.354729 CCCAGCCCGGTTGAATGA 59.645 61.111 2.20 0.00 0.00 2.57
827 843 2.046285 CCCAGCCCGGTTGAATGAC 61.046 63.158 2.20 0.00 0.00 3.06
828 844 1.303236 CCAGCCCGGTTGAATGACA 60.303 57.895 2.20 0.00 0.00 3.58
829 845 0.893270 CCAGCCCGGTTGAATGACAA 60.893 55.000 2.20 0.00 36.02 3.18
830 846 0.958091 CAGCCCGGTTGAATGACAAA 59.042 50.000 0.00 0.00 40.36 2.83
831 847 1.068333 CAGCCCGGTTGAATGACAAAG 60.068 52.381 0.00 0.00 40.36 2.77
832 848 1.202879 AGCCCGGTTGAATGACAAAGA 60.203 47.619 0.00 0.00 40.36 2.52
833 849 1.200020 GCCCGGTTGAATGACAAAGAG 59.800 52.381 0.00 0.00 40.36 2.85
834 850 1.812571 CCCGGTTGAATGACAAAGAGG 59.187 52.381 0.00 0.00 40.36 3.69
836 852 1.135972 CGGTTGAATGACAAAGAGGCG 60.136 52.381 0.00 0.00 40.36 5.52
837 853 1.200020 GGTTGAATGACAAAGAGGCGG 59.800 52.381 0.00 0.00 40.36 6.13
838 854 0.881118 TTGAATGACAAAGAGGCGGC 59.119 50.000 0.00 0.00 35.39 6.53
839 855 0.960364 TGAATGACAAAGAGGCGGCC 60.960 55.000 12.11 12.11 0.00 6.13
840 856 0.678048 GAATGACAAAGAGGCGGCCT 60.678 55.000 24.13 24.13 36.03 5.19
842 858 0.179000 ATGACAAAGAGGCGGCCTAG 59.821 55.000 23.92 14.50 31.76 3.02
843 859 1.153349 GACAAAGAGGCGGCCTAGG 60.153 63.158 23.92 13.80 31.76 3.02
844 860 2.514824 CAAAGAGGCGGCCTAGGC 60.515 66.667 26.55 26.55 41.06 3.93
859 875 4.759205 GGCCCAGCCCGGTTGAAT 62.759 66.667 2.20 0.00 44.06 2.57
860 876 3.451894 GCCCAGCCCGGTTGAATG 61.452 66.667 2.20 0.00 0.00 2.67
862 878 2.046285 CCCAGCCCGGTTGAATGAC 61.046 63.158 2.20 0.00 0.00 3.06
863 879 1.303236 CCAGCCCGGTTGAATGACA 60.303 57.895 2.20 0.00 0.00 3.58
870 886 1.200020 CCGGTTGAATGACAAAGAGGC 59.800 52.381 0.00 0.00 40.36 4.70
904 920 3.073062 AGCCCGAATGCCTCTGTTATATT 59.927 43.478 0.00 0.00 0.00 1.28
905 921 3.437049 GCCCGAATGCCTCTGTTATATTC 59.563 47.826 0.00 0.00 0.00 1.75
920 936 7.230913 TCTGTTATATTCTCGGGAAAGACCTAG 59.769 40.741 0.00 0.00 38.98 3.02
925 942 5.236150 ATTCTCGGGAAAGACCTAGCTAGG 61.236 50.000 33.98 33.98 40.93 3.02
945 962 4.508128 CACCGCCGTCGCTACCAT 62.508 66.667 0.00 0.00 0.00 3.55
946 963 2.829914 ACCGCCGTCGCTACCATA 60.830 61.111 0.00 0.00 0.00 2.74
949 966 2.809706 GCCGTCGCTACCATACCA 59.190 61.111 0.00 0.00 0.00 3.25
953 970 0.030369 CGTCGCTACCATACCACTCC 59.970 60.000 0.00 0.00 0.00 3.85
955 972 1.337387 GTCGCTACCATACCACTCCTC 59.663 57.143 0.00 0.00 0.00 3.71
958 975 2.431057 CGCTACCATACCACTCCTCTTT 59.569 50.000 0.00 0.00 0.00 2.52
1028 2098 2.126463 CGCAGGAGAACGAGCGAA 60.126 61.111 0.00 0.00 46.47 4.70
1330 2406 1.242665 ACACGACTCCTCCCGTCTTC 61.243 60.000 0.00 0.00 36.83 2.87
1383 2459 1.339151 GGCCTCCTCATCGTTTCTGTT 60.339 52.381 0.00 0.00 0.00 3.16
1386 2462 3.257393 CCTCCTCATCGTTTCTGTTCAG 58.743 50.000 0.00 0.00 0.00 3.02
1389 2465 5.394663 CCTCCTCATCGTTTCTGTTCAGTAT 60.395 44.000 0.00 0.00 0.00 2.12
1701 2855 3.959293 TCTGATGATGGCATTTGACACT 58.041 40.909 0.00 0.00 34.80 3.55
1775 2947 2.026822 ACCTGATTGAGATGGGTGACAC 60.027 50.000 0.00 0.00 0.00 3.67
1804 2976 4.739137 GCATCTCCAGTCATAGTGAGGAAC 60.739 50.000 0.00 0.00 0.00 3.62
2146 3339 3.510388 TGCCTTTCGTCTGATAGAGTG 57.490 47.619 0.00 0.00 0.00 3.51
2275 3718 7.448420 ACTATGATCAATAAGTCATGACCCTG 58.552 38.462 22.21 13.67 36.53 4.45
2400 3844 1.535462 ACCGCAGAATCAACTTTTCCG 59.465 47.619 0.00 0.00 0.00 4.30
2627 4076 7.658575 TGGTTAGGTGTTGAAAGATACTGTTAC 59.341 37.037 0.00 0.00 0.00 2.50
2629 4078 8.493547 GTTAGGTGTTGAAAGATACTGTTACAC 58.506 37.037 0.00 0.00 35.21 2.90
2703 4153 3.954258 CTCCTAACATTTTAAGGGCTGGG 59.046 47.826 0.00 0.00 0.00 4.45
2771 4221 1.677217 GCTCAGGTCCCAGATTGTGTC 60.677 57.143 0.00 0.00 0.00 3.67
2868 4319 1.131126 CATGTGCCGGCTAGTTTCTTG 59.869 52.381 29.70 13.95 0.00 3.02
2992 4446 9.034800 TCTAAAAATTATGGAGTCATTTTGGCT 57.965 29.630 0.00 0.00 33.30 4.75
3030 4508 2.009774 CCAATTGATCCGTCAGTGTCC 58.990 52.381 7.12 0.00 35.39 4.02
3063 4542 7.777910 TCCCTTTAAACTGAAGAATTGACTTGA 59.222 33.333 0.00 0.00 0.00 3.02
3111 4590 6.442541 TCTTAAAGGTCATCCAGTGGTTTA 57.557 37.500 9.54 2.73 35.89 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.539825 CACTATAGAACAGCATATCAAGTTCTT 57.460 33.333 6.78 8.39 46.02 2.52
20 21 7.655328 AGCACTATAGAACAGCATATCAAGTTC 59.345 37.037 6.78 0.00 40.37 3.01
21 22 7.504403 AGCACTATAGAACAGCATATCAAGTT 58.496 34.615 6.78 0.00 0.00 2.66
22 23 7.060383 AGCACTATAGAACAGCATATCAAGT 57.940 36.000 6.78 0.00 0.00 3.16
23 24 7.654923 TCAAGCACTATAGAACAGCATATCAAG 59.345 37.037 6.78 0.00 0.00 3.02
25 26 7.054491 TCAAGCACTATAGAACAGCATATCA 57.946 36.000 6.78 0.00 0.00 2.15
26 27 7.953158 TTCAAGCACTATAGAACAGCATATC 57.047 36.000 6.78 0.00 0.00 1.63
27 28 8.915057 ATTTCAAGCACTATAGAACAGCATAT 57.085 30.769 6.78 0.00 0.00 1.78
29 30 7.478322 CAATTTCAAGCACTATAGAACAGCAT 58.522 34.615 6.78 0.00 0.00 3.79
30 31 6.623549 GCAATTTCAAGCACTATAGAACAGCA 60.624 38.462 6.78 0.00 0.00 4.41
31 32 5.741040 GCAATTTCAAGCACTATAGAACAGC 59.259 40.000 6.78 5.07 0.00 4.40
33 34 6.816134 TGCAATTTCAAGCACTATAGAACA 57.184 33.333 6.78 0.00 35.51 3.18
35 36 7.307694 CAGTTGCAATTTCAAGCACTATAGAA 58.692 34.615 6.78 0.00 41.05 2.10
36 37 6.127925 CCAGTTGCAATTTCAAGCACTATAGA 60.128 38.462 6.78 0.00 41.05 1.98
38 39 5.709631 TCCAGTTGCAATTTCAAGCACTATA 59.290 36.000 0.59 0.00 41.05 1.31
41 42 2.694628 TCCAGTTGCAATTTCAAGCACT 59.305 40.909 0.59 0.00 41.05 4.40
42 43 2.796593 GTCCAGTTGCAATTTCAAGCAC 59.203 45.455 0.59 0.00 41.05 4.40
43 44 2.429971 TGTCCAGTTGCAATTTCAAGCA 59.570 40.909 0.59 0.00 39.32 3.91
44 45 2.796593 GTGTCCAGTTGCAATTTCAAGC 59.203 45.455 0.59 0.00 0.00 4.01
45 46 3.383761 GGTGTCCAGTTGCAATTTCAAG 58.616 45.455 0.59 0.00 0.00 3.02
47 48 1.336440 CGGTGTCCAGTTGCAATTTCA 59.664 47.619 0.59 0.00 0.00 2.69
48 49 1.335872 CCGGTGTCCAGTTGCAATTTC 60.336 52.381 0.59 0.00 0.00 2.17
50 51 0.179004 TCCGGTGTCCAGTTGCAATT 60.179 50.000 0.59 0.00 0.00 2.32
51 52 0.606401 CTCCGGTGTCCAGTTGCAAT 60.606 55.000 0.59 0.00 0.00 3.56
52 53 1.227823 CTCCGGTGTCCAGTTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
53 54 1.691195 TTCTCCGGTGTCCAGTTGCA 61.691 55.000 0.00 0.00 0.00 4.08
55 56 1.961793 TTTTCTCCGGTGTCCAGTTG 58.038 50.000 0.00 0.00 0.00 3.16
56 57 2.572290 CTTTTTCTCCGGTGTCCAGTT 58.428 47.619 0.00 0.00 0.00 3.16
57 58 1.814248 GCTTTTTCTCCGGTGTCCAGT 60.814 52.381 0.00 0.00 0.00 4.00
58 59 0.875059 GCTTTTTCTCCGGTGTCCAG 59.125 55.000 0.00 0.00 0.00 3.86
59 60 0.181587 TGCTTTTTCTCCGGTGTCCA 59.818 50.000 0.00 0.00 0.00 4.02
60 61 1.001706 GTTGCTTTTTCTCCGGTGTCC 60.002 52.381 0.00 0.00 0.00 4.02
61 62 1.947456 AGTTGCTTTTTCTCCGGTGTC 59.053 47.619 0.00 0.00 0.00 3.67
62 63 1.676006 CAGTTGCTTTTTCTCCGGTGT 59.324 47.619 0.00 0.00 0.00 4.16
63 64 1.600413 GCAGTTGCTTTTTCTCCGGTG 60.600 52.381 0.00 0.00 38.21 4.94
64 65 0.668535 GCAGTTGCTTTTTCTCCGGT 59.331 50.000 0.00 0.00 38.21 5.28
65 66 0.667993 TGCAGTTGCTTTTTCTCCGG 59.332 50.000 5.62 0.00 42.66 5.14
67 68 2.297033 TCCATGCAGTTGCTTTTTCTCC 59.703 45.455 5.62 0.00 42.66 3.71
69 70 5.726980 TTATCCATGCAGTTGCTTTTTCT 57.273 34.783 5.62 0.00 42.66 2.52
70 71 6.340537 CATTATCCATGCAGTTGCTTTTTC 57.659 37.500 5.62 0.00 42.66 2.29
93 94 3.720949 TCATTATTTGGCTGCTGATGC 57.279 42.857 0.00 0.00 40.20 3.91
94 95 5.258456 AGTTCATTATTTGGCTGCTGATG 57.742 39.130 0.00 0.00 0.00 3.07
96 97 4.336433 GCTAGTTCATTATTTGGCTGCTGA 59.664 41.667 0.00 0.00 0.00 4.26
97 98 4.096833 TGCTAGTTCATTATTTGGCTGCTG 59.903 41.667 0.00 0.00 0.00 4.41
101 102 8.734386 GCTAATATGCTAGTTCATTATTTGGCT 58.266 33.333 0.00 0.00 0.00 4.75
102 103 8.514594 TGCTAATATGCTAGTTCATTATTTGGC 58.485 33.333 0.00 0.00 0.00 4.52
106 107 9.964354 TCCATGCTAATATGCTAGTTCATTATT 57.036 29.630 0.00 0.00 0.00 1.40
107 108 9.964354 TTCCATGCTAATATGCTAGTTCATTAT 57.036 29.630 0.00 0.00 0.00 1.28
108 109 9.791801 TTTCCATGCTAATATGCTAGTTCATTA 57.208 29.630 0.00 0.00 0.00 1.90
109 110 8.571336 GTTTCCATGCTAATATGCTAGTTCATT 58.429 33.333 0.00 0.00 0.00 2.57
110 111 7.941238 AGTTTCCATGCTAATATGCTAGTTCAT 59.059 33.333 0.00 0.00 0.00 2.57
112 113 7.308229 CCAGTTTCCATGCTAATATGCTAGTTC 60.308 40.741 0.00 0.00 0.00 3.01
114 115 6.000219 CCAGTTTCCATGCTAATATGCTAGT 59.000 40.000 0.00 0.00 0.00 2.57
115 116 6.233434 TCCAGTTTCCATGCTAATATGCTAG 58.767 40.000 0.00 0.00 0.00 3.42
116 117 6.183361 ACTCCAGTTTCCATGCTAATATGCTA 60.183 38.462 0.00 0.00 0.00 3.49
117 118 5.052693 TCCAGTTTCCATGCTAATATGCT 57.947 39.130 0.00 0.00 0.00 3.79
118 119 4.823989 ACTCCAGTTTCCATGCTAATATGC 59.176 41.667 0.00 0.00 0.00 3.14
119 120 8.345565 GTTTACTCCAGTTTCCATGCTAATATG 58.654 37.037 0.00 0.00 0.00 1.78
120 121 8.052748 TGTTTACTCCAGTTTCCATGCTAATAT 58.947 33.333 0.00 0.00 0.00 1.28
121 122 7.398829 TGTTTACTCCAGTTTCCATGCTAATA 58.601 34.615 0.00 0.00 0.00 0.98
122 123 6.245408 TGTTTACTCCAGTTTCCATGCTAAT 58.755 36.000 0.00 0.00 0.00 1.73
123 124 5.626142 TGTTTACTCCAGTTTCCATGCTAA 58.374 37.500 0.00 0.00 0.00 3.09
124 125 5.235850 TGTTTACTCCAGTTTCCATGCTA 57.764 39.130 0.00 0.00 0.00 3.49
125 126 4.074970 CTGTTTACTCCAGTTTCCATGCT 58.925 43.478 0.00 0.00 0.00 3.79
126 127 3.366374 GCTGTTTACTCCAGTTTCCATGC 60.366 47.826 0.00 0.00 32.41 4.06
127 128 3.820467 TGCTGTTTACTCCAGTTTCCATG 59.180 43.478 0.00 0.00 32.41 3.66
128 129 4.098914 TGCTGTTTACTCCAGTTTCCAT 57.901 40.909 0.00 0.00 32.41 3.41
130 131 4.911514 TTTGCTGTTTACTCCAGTTTCC 57.088 40.909 0.00 0.00 32.41 3.13
132 133 6.322712 TGGTATTTTGCTGTTTACTCCAGTTT 59.677 34.615 0.00 0.00 32.41 2.66
133 134 5.830991 TGGTATTTTGCTGTTTACTCCAGTT 59.169 36.000 0.00 0.00 32.41 3.16
134 135 5.381757 TGGTATTTTGCTGTTTACTCCAGT 58.618 37.500 0.00 0.00 32.41 4.00
138 139 6.908825 TGTCATGGTATTTTGCTGTTTACTC 58.091 36.000 0.00 0.00 0.00 2.59
139 140 6.892658 TGTCATGGTATTTTGCTGTTTACT 57.107 33.333 0.00 0.00 0.00 2.24
140 141 7.938563 TTTGTCATGGTATTTTGCTGTTTAC 57.061 32.000 0.00 0.00 0.00 2.01
141 142 8.200792 AGTTTTGTCATGGTATTTTGCTGTTTA 58.799 29.630 0.00 0.00 0.00 2.01
144 145 6.160576 AGTTTTGTCATGGTATTTTGCTGT 57.839 33.333 0.00 0.00 0.00 4.40
145 146 8.586570 TTAAGTTTTGTCATGGTATTTTGCTG 57.413 30.769 0.00 0.00 0.00 4.41
146 147 9.606631 TTTTAAGTTTTGTCATGGTATTTTGCT 57.393 25.926 0.00 0.00 0.00 3.91
173 174 9.672673 TCTGTAAAAGTACCGAATAGTAGTAGT 57.327 33.333 0.00 0.00 0.00 2.73
195 196 8.649591 ACTCTTCTGCTCATATGATAATTCTGT 58.350 33.333 5.72 0.00 0.00 3.41
217 218 8.008513 TCTGCCGATTATTAAGAAGTAACTCT 57.991 34.615 0.00 0.00 0.00 3.24
218 219 8.541312 GTTCTGCCGATTATTAAGAAGTAACTC 58.459 37.037 0.00 0.00 0.00 3.01
219 220 8.258708 AGTTCTGCCGATTATTAAGAAGTAACT 58.741 33.333 0.00 0.00 30.61 2.24
220 221 8.421673 AGTTCTGCCGATTATTAAGAAGTAAC 57.578 34.615 0.00 0.00 30.61 2.50
222 223 8.689061 TGTAGTTCTGCCGATTATTAAGAAGTA 58.311 33.333 0.00 0.00 33.65 2.24
223 224 7.553334 TGTAGTTCTGCCGATTATTAAGAAGT 58.447 34.615 0.00 0.00 35.34 3.01
225 226 8.958119 ATTGTAGTTCTGCCGATTATTAAGAA 57.042 30.769 0.00 0.00 0.00 2.52
226 227 9.472361 GTATTGTAGTTCTGCCGATTATTAAGA 57.528 33.333 0.00 0.00 0.00 2.10
227 228 8.709646 GGTATTGTAGTTCTGCCGATTATTAAG 58.290 37.037 0.00 0.00 0.00 1.85
229 230 6.864685 CGGTATTGTAGTTCTGCCGATTATTA 59.135 38.462 0.00 0.00 40.04 0.98
231 232 5.010314 TCGGTATTGTAGTTCTGCCGATTAT 59.990 40.000 0.00 0.00 41.29 1.28
232 233 4.338964 TCGGTATTGTAGTTCTGCCGATTA 59.661 41.667 0.00 0.00 41.29 1.75
233 234 3.131577 TCGGTATTGTAGTTCTGCCGATT 59.868 43.478 0.00 0.00 41.29 3.34
234 235 2.691526 TCGGTATTGTAGTTCTGCCGAT 59.308 45.455 0.00 0.00 41.29 4.18
235 236 2.093890 TCGGTATTGTAGTTCTGCCGA 58.906 47.619 0.00 0.00 43.47 5.54
237 238 3.858247 AGTTCGGTATTGTAGTTCTGCC 58.142 45.455 0.00 0.00 0.00 4.85
239 240 3.546670 GCGAGTTCGGTATTGTAGTTCTG 59.453 47.826 3.50 0.00 40.23 3.02
240 241 3.428589 GGCGAGTTCGGTATTGTAGTTCT 60.429 47.826 3.50 0.00 40.23 3.01
241 242 2.856557 GGCGAGTTCGGTATTGTAGTTC 59.143 50.000 3.50 0.00 40.23 3.01
242 243 2.733227 CGGCGAGTTCGGTATTGTAGTT 60.733 50.000 0.00 0.00 40.23 2.24
243 244 1.202222 CGGCGAGTTCGGTATTGTAGT 60.202 52.381 0.00 0.00 40.23 2.73
245 246 1.093972 TCGGCGAGTTCGGTATTGTA 58.906 50.000 4.99 0.00 40.23 2.41
246 247 0.244450 TTCGGCGAGTTCGGTATTGT 59.756 50.000 10.46 0.00 40.23 2.71
248 249 0.813184 TCTTCGGCGAGTTCGGTATT 59.187 50.000 10.46 0.00 40.23 1.89
249 250 0.813184 TTCTTCGGCGAGTTCGGTAT 59.187 50.000 10.46 0.00 40.23 2.73
251 252 0.249573 TTTTCTTCGGCGAGTTCGGT 60.250 50.000 10.46 0.00 40.23 4.69
254 255 3.120752 GGTTAGTTTTCTTCGGCGAGTTC 60.121 47.826 10.46 0.00 0.00 3.01
255 256 2.804527 GGTTAGTTTTCTTCGGCGAGTT 59.195 45.455 10.46 0.00 0.00 3.01
256 257 2.036862 AGGTTAGTTTTCTTCGGCGAGT 59.963 45.455 10.46 0.00 0.00 4.18
257 258 2.666994 GAGGTTAGTTTTCTTCGGCGAG 59.333 50.000 10.46 4.79 0.00 5.03
258 259 2.036217 TGAGGTTAGTTTTCTTCGGCGA 59.964 45.455 4.99 4.99 0.00 5.54
259 260 2.157085 GTGAGGTTAGTTTTCTTCGGCG 59.843 50.000 0.00 0.00 0.00 6.46
260 261 3.059120 GTGTGAGGTTAGTTTTCTTCGGC 60.059 47.826 0.00 0.00 0.00 5.54
261 262 3.183775 CGTGTGAGGTTAGTTTTCTTCGG 59.816 47.826 0.00 0.00 0.00 4.30
262 263 3.800506 ACGTGTGAGGTTAGTTTTCTTCG 59.199 43.478 0.00 0.00 0.00 3.79
263 264 6.833342 TTACGTGTGAGGTTAGTTTTCTTC 57.167 37.500 0.00 0.00 0.00 2.87
265 266 7.496591 TCAATTTACGTGTGAGGTTAGTTTTCT 59.503 33.333 0.00 0.00 0.00 2.52
266 267 7.632721 TCAATTTACGTGTGAGGTTAGTTTTC 58.367 34.615 0.00 0.00 0.00 2.29
268 269 6.764560 ACTCAATTTACGTGTGAGGTTAGTTT 59.235 34.615 18.52 0.97 42.54 2.66
269 270 6.285990 ACTCAATTTACGTGTGAGGTTAGTT 58.714 36.000 18.52 1.49 42.54 2.24
270 271 5.850614 ACTCAATTTACGTGTGAGGTTAGT 58.149 37.500 18.52 3.85 42.54 2.24
271 272 7.088905 AGTACTCAATTTACGTGTGAGGTTAG 58.911 38.462 18.52 3.35 42.54 2.34
272 273 6.985117 AGTACTCAATTTACGTGTGAGGTTA 58.015 36.000 18.52 6.19 42.54 2.85
273 274 5.850614 AGTACTCAATTTACGTGTGAGGTT 58.149 37.500 18.52 6.89 42.54 3.50
274 275 5.464030 AGTACTCAATTTACGTGTGAGGT 57.536 39.130 18.52 10.47 42.54 3.85
282 283 6.271566 GGGAGGAAGTAGTACTCAATTTACG 58.728 44.000 2.58 0.00 32.98 3.18
291 292 1.574821 GGAGGGGGAGGAAGTAGTACT 59.425 57.143 0.00 0.00 0.00 2.73
292 293 1.412793 GGGAGGGGGAGGAAGTAGTAC 60.413 61.905 0.00 0.00 0.00 2.73
313 314 7.040478 TGGGAAGATGTAATGTGAGAAACAAAG 60.040 37.037 0.00 0.00 43.61 2.77
314 315 6.775142 TGGGAAGATGTAATGTGAGAAACAAA 59.225 34.615 0.00 0.00 43.61 2.83
316 317 5.875224 TGGGAAGATGTAATGTGAGAAACA 58.125 37.500 0.00 0.00 44.79 2.83
320 321 4.104086 ACCTGGGAAGATGTAATGTGAGA 58.896 43.478 0.00 0.00 0.00 3.27
321 322 4.494091 ACCTGGGAAGATGTAATGTGAG 57.506 45.455 0.00 0.00 0.00 3.51
323 324 3.696051 CCAACCTGGGAAGATGTAATGTG 59.304 47.826 0.00 0.00 32.67 3.21
325 326 2.689983 GCCAACCTGGGAAGATGTAATG 59.310 50.000 0.00 0.00 38.19 1.90
326 327 2.311542 TGCCAACCTGGGAAGATGTAAT 59.688 45.455 0.00 0.00 33.84 1.89
329 330 0.706433 ATGCCAACCTGGGAAGATGT 59.294 50.000 0.00 0.00 42.59 3.06
341 342 0.676466 TGACGTCCATGGATGCCAAC 60.676 55.000 30.24 19.63 36.95 3.77
372 373 4.083862 GGAGAGGTGGTGCCGGAC 62.084 72.222 5.05 0.00 43.70 4.79
377 378 4.083862 GGACGGGAGAGGTGGTGC 62.084 72.222 0.00 0.00 0.00 5.01
378 379 3.760035 CGGACGGGAGAGGTGGTG 61.760 72.222 0.00 0.00 0.00 4.17
384 385 4.227134 CATGGGCGGACGGGAGAG 62.227 72.222 0.00 0.00 0.00 3.20
389 390 3.910914 TTTCACCATGGGCGGACGG 62.911 63.158 18.09 0.00 0.00 4.79
390 391 2.359354 TTTCACCATGGGCGGACG 60.359 61.111 18.09 0.00 0.00 4.79
488 489 0.603975 GCACTCCTGGGTGAACTCAC 60.604 60.000 16.39 0.98 45.72 3.51
490 491 1.003233 GGCACTCCTGGGTGAACTC 60.003 63.158 16.39 2.26 39.34 3.01
491 492 1.136329 ATGGCACTCCTGGGTGAACT 61.136 55.000 16.39 0.82 39.34 3.01
492 493 0.962356 CATGGCACTCCTGGGTGAAC 60.962 60.000 16.39 9.99 39.34 3.18
493 494 1.133181 TCATGGCACTCCTGGGTGAA 61.133 55.000 16.39 6.56 39.34 3.18
495 496 0.465097 GATCATGGCACTCCTGGGTG 60.465 60.000 9.99 9.99 39.91 4.61
497 498 0.465097 GTGATCATGGCACTCCTGGG 60.465 60.000 0.00 0.00 33.57 4.45
498 499 0.545171 AGTGATCATGGCACTCCTGG 59.455 55.000 14.00 0.00 42.62 4.45
499 500 3.181457 ACATAGTGATCATGGCACTCCTG 60.181 47.826 20.47 19.65 44.85 3.86
500 501 3.044156 ACATAGTGATCATGGCACTCCT 58.956 45.455 20.47 10.43 44.85 3.69
501 502 3.482156 ACATAGTGATCATGGCACTCC 57.518 47.619 20.47 0.00 44.85 3.85
502 503 5.207110 ACTACATAGTGATCATGGCACTC 57.793 43.478 20.47 2.85 44.85 3.51
504 505 4.926238 GCTACTACATAGTGATCATGGCAC 59.074 45.833 0.00 10.46 37.10 5.01
505 506 4.021104 GGCTACTACATAGTGATCATGGCA 60.021 45.833 0.00 0.00 37.10 4.92
507 508 4.738124 CGGCTACTACATAGTGATCATGG 58.262 47.826 0.00 0.00 37.10 3.66
508 509 4.169508 GCGGCTACTACATAGTGATCATG 58.830 47.826 0.00 0.00 37.10 3.07
509 510 3.193691 GGCGGCTACTACATAGTGATCAT 59.806 47.826 0.00 0.00 37.10 2.45
510 511 2.557056 GGCGGCTACTACATAGTGATCA 59.443 50.000 0.00 0.00 37.10 2.92
511 512 2.820787 AGGCGGCTACTACATAGTGATC 59.179 50.000 11.03 0.00 37.10 2.92
513 514 2.228059 GAGGCGGCTACTACATAGTGA 58.772 52.381 13.24 0.00 37.10 3.41
514 515 1.069159 CGAGGCGGCTACTACATAGTG 60.069 57.143 13.24 0.00 37.10 2.74
515 516 1.236628 CGAGGCGGCTACTACATAGT 58.763 55.000 13.24 0.00 40.24 2.12
516 517 1.236628 ACGAGGCGGCTACTACATAG 58.763 55.000 13.24 0.00 0.00 2.23
517 518 1.335810 CAACGAGGCGGCTACTACATA 59.664 52.381 13.24 0.00 0.00 2.29
519 520 1.509463 CAACGAGGCGGCTACTACA 59.491 57.895 13.24 0.00 0.00 2.74
520 521 1.877165 GCAACGAGGCGGCTACTAC 60.877 63.158 13.24 0.00 0.00 2.73
546 547 3.399105 TTGTCGGGATGGGATGGCG 62.399 63.158 0.00 0.00 0.00 5.69
548 549 1.526917 GCTTGTCGGGATGGGATGG 60.527 63.158 0.00 0.00 0.00 3.51
549 550 1.889105 CGCTTGTCGGGATGGGATG 60.889 63.158 0.00 0.00 33.78 3.51
550 551 2.505982 CGCTTGTCGGGATGGGAT 59.494 61.111 0.00 0.00 33.78 3.85
640 641 1.986575 GAAATGGCTGTCAGCGAGGC 61.987 60.000 18.44 5.35 43.62 4.70
653 654 5.120674 GCGAAGGAAAAATGAAAGGAAATGG 59.879 40.000 0.00 0.00 0.00 3.16
660 661 7.468922 AAAGAAAGCGAAGGAAAAATGAAAG 57.531 32.000 0.00 0.00 0.00 2.62
668 669 3.317993 CCCTGAAAAGAAAGCGAAGGAAA 59.682 43.478 0.00 0.00 0.00 3.13
669 670 2.884639 CCCTGAAAAGAAAGCGAAGGAA 59.115 45.455 0.00 0.00 0.00 3.36
670 671 2.504367 CCCTGAAAAGAAAGCGAAGGA 58.496 47.619 0.00 0.00 0.00 3.36
686 687 2.519013 CCCTGAAAAGAAACTCCCCTG 58.481 52.381 0.00 0.00 0.00 4.45
687 688 1.429299 CCCCTGAAAAGAAACTCCCCT 59.571 52.381 0.00 0.00 0.00 4.79
688 689 1.427753 TCCCCTGAAAAGAAACTCCCC 59.572 52.381 0.00 0.00 0.00 4.81
690 691 3.510531 ACTCCCCTGAAAAGAAACTCC 57.489 47.619 0.00 0.00 0.00 3.85
691 692 6.238648 TGAATACTCCCCTGAAAAGAAACTC 58.761 40.000 0.00 0.00 0.00 3.01
693 694 6.004574 ACTGAATACTCCCCTGAAAAGAAAC 58.995 40.000 0.00 0.00 0.00 2.78
694 695 6.200878 ACTGAATACTCCCCTGAAAAGAAA 57.799 37.500 0.00 0.00 0.00 2.52
695 696 5.843019 ACTGAATACTCCCCTGAAAAGAA 57.157 39.130 0.00 0.00 0.00 2.52
701 702 5.568023 CGTTTACAACTGAATACTCCCCTGA 60.568 44.000 0.00 0.00 0.00 3.86
703 704 4.529377 TCGTTTACAACTGAATACTCCCCT 59.471 41.667 0.00 0.00 0.00 4.79
707 708 6.128902 CCACACTCGTTTACAACTGAATACTC 60.129 42.308 0.00 0.00 0.00 2.59
747 763 2.154462 CCGCCTCTTTGTCATTCAACT 58.846 47.619 0.00 0.00 35.61 3.16
748 764 1.401539 GCCGCCTCTTTGTCATTCAAC 60.402 52.381 0.00 0.00 35.61 3.18
752 768 0.618458 TAGGCCGCCTCTTTGTCATT 59.382 50.000 17.40 0.00 34.61 2.57
753 769 0.179000 CTAGGCCGCCTCTTTGTCAT 59.821 55.000 17.40 0.00 34.61 3.06
755 771 1.153349 CCTAGGCCGCCTCTTTGTC 60.153 63.158 17.40 0.00 34.61 3.18
757 773 2.514824 GCCTAGGCCGCCTCTTTG 60.515 66.667 24.19 4.10 34.61 2.77
774 790 2.046285 GTCATTCAACCGGGCTGGG 61.046 63.158 18.49 5.37 44.64 4.45
775 791 0.893270 TTGTCATTCAACCGGGCTGG 60.893 55.000 11.83 11.83 46.41 4.85
776 792 0.958091 TTTGTCATTCAACCGGGCTG 59.042 50.000 6.32 2.29 35.61 4.85
778 794 1.200020 CTCTTTGTCATTCAACCGGGC 59.800 52.381 6.32 0.00 35.61 6.13
779 795 1.812571 CCTCTTTGTCATTCAACCGGG 59.187 52.381 6.32 0.00 35.61 5.73
780 796 1.200020 GCCTCTTTGTCATTCAACCGG 59.800 52.381 0.00 0.00 35.61 5.28
781 797 1.135972 CGCCTCTTTGTCATTCAACCG 60.136 52.381 0.00 0.00 35.61 4.44
782 798 1.200020 CCGCCTCTTTGTCATTCAACC 59.800 52.381 0.00 0.00 35.61 3.77
783 799 1.401539 GCCGCCTCTTTGTCATTCAAC 60.402 52.381 0.00 0.00 35.61 3.18
785 801 0.960364 GGCCGCCTCTTTGTCATTCA 60.960 55.000 0.71 0.00 0.00 2.57
786 802 0.678048 AGGCCGCCTCTTTGTCATTC 60.678 55.000 5.94 0.00 0.00 2.67
787 803 0.618458 TAGGCCGCCTCTTTGTCATT 59.382 50.000 17.40 0.00 34.61 2.57
788 804 0.179000 CTAGGCCGCCTCTTTGTCAT 59.821 55.000 17.40 0.00 34.61 3.06
789 805 1.596934 CTAGGCCGCCTCTTTGTCA 59.403 57.895 17.40 0.00 34.61 3.58
790 806 1.153349 CCTAGGCCGCCTCTTTGTC 60.153 63.158 17.40 0.00 34.61 3.18
791 807 2.990479 CCTAGGCCGCCTCTTTGT 59.010 61.111 17.40 0.00 34.61 2.83
792 808 2.514824 GCCTAGGCCGCCTCTTTG 60.515 66.667 24.19 4.10 34.61 2.77
809 825 2.046285 GTCATTCAACCGGGCTGGG 61.046 63.158 18.49 5.37 44.64 4.45
810 826 0.893270 TTGTCATTCAACCGGGCTGG 60.893 55.000 11.83 11.83 46.41 4.85
811 827 0.958091 TTTGTCATTCAACCGGGCTG 59.042 50.000 6.32 2.29 35.61 4.85
814 830 1.812571 CCTCTTTGTCATTCAACCGGG 59.187 52.381 6.32 0.00 35.61 5.73
815 831 1.200020 GCCTCTTTGTCATTCAACCGG 59.800 52.381 0.00 0.00 35.61 5.28
816 832 1.135972 CGCCTCTTTGTCATTCAACCG 60.136 52.381 0.00 0.00 35.61 4.44
819 835 0.881118 GCCGCCTCTTTGTCATTCAA 59.119 50.000 0.00 0.00 0.00 2.69
822 838 0.618458 TAGGCCGCCTCTTTGTCATT 59.382 50.000 17.40 0.00 34.61 2.57
823 839 0.179000 CTAGGCCGCCTCTTTGTCAT 59.821 55.000 17.40 0.00 34.61 3.06
824 840 1.596934 CTAGGCCGCCTCTTTGTCA 59.403 57.895 17.40 0.00 34.61 3.58
825 841 1.153349 CCTAGGCCGCCTCTTTGTC 60.153 63.158 17.40 0.00 34.61 3.18
826 842 2.990479 CCTAGGCCGCCTCTTTGT 59.010 61.111 17.40 0.00 34.61 2.83
827 843 2.514824 GCCTAGGCCGCCTCTTTG 60.515 66.667 24.19 4.10 34.61 2.77
843 859 3.451894 CATTCAACCGGGCTGGGC 61.452 66.667 18.49 0.00 44.64 5.36
844 860 2.046285 GTCATTCAACCGGGCTGGG 61.046 63.158 18.49 5.37 44.64 4.45
847 863 1.202879 TCTTTGTCATTCAACCGGGCT 60.203 47.619 6.32 0.00 35.61 5.19
849 865 1.812571 CCTCTTTGTCATTCAACCGGG 59.187 52.381 6.32 0.00 35.61 5.73
851 867 1.135972 CGCCTCTTTGTCATTCAACCG 60.136 52.381 0.00 0.00 35.61 4.44
852 868 1.200020 CCGCCTCTTTGTCATTCAACC 59.800 52.381 0.00 0.00 35.61 3.77
854 870 0.881118 GCCGCCTCTTTGTCATTCAA 59.119 50.000 0.00 0.00 0.00 2.69
855 871 0.960364 GGCCGCCTCTTTGTCATTCA 60.960 55.000 0.71 0.00 0.00 2.57
856 872 0.678048 AGGCCGCCTCTTTGTCATTC 60.678 55.000 5.94 0.00 0.00 2.67
859 875 1.596934 CTAGGCCGCCTCTTTGTCA 59.403 57.895 17.40 0.00 34.61 3.58
860 876 1.153349 CCTAGGCCGCCTCTTTGTC 60.153 63.158 17.40 0.00 34.61 3.18
862 878 2.514824 GCCTAGGCCGCCTCTTTG 60.515 66.667 24.19 4.10 34.61 2.77
904 920 2.423088 CCTAGCTAGGTCTTTCCCGAGA 60.423 54.545 28.90 0.00 38.69 4.04
905 921 1.957877 CCTAGCTAGGTCTTTCCCGAG 59.042 57.143 28.90 1.45 38.69 4.63
920 936 4.509737 GACGGCGGTGGACCTAGC 62.510 72.222 13.24 0.00 0.00 3.42
945 962 3.093057 GAGCAGAGAAAGAGGAGTGGTA 58.907 50.000 0.00 0.00 0.00 3.25
946 963 1.899142 GAGCAGAGAAAGAGGAGTGGT 59.101 52.381 0.00 0.00 0.00 4.16
949 966 2.178580 CAGGAGCAGAGAAAGAGGAGT 58.821 52.381 0.00 0.00 0.00 3.85
953 970 1.206849 GTCCCAGGAGCAGAGAAAGAG 59.793 57.143 0.00 0.00 0.00 2.85
955 972 0.108424 CGTCCCAGGAGCAGAGAAAG 60.108 60.000 0.00 0.00 0.00 2.62
958 975 2.230189 ATCCGTCCCAGGAGCAGAGA 62.230 60.000 0.00 0.00 44.55 3.10
1019 2074 1.939769 GAGGAGAGGCTTCGCTCGTT 61.940 60.000 0.00 0.00 38.06 3.85
1021 2076 2.411290 GAGGAGAGGCTTCGCTCG 59.589 66.667 0.00 0.00 38.06 5.03
1028 2098 4.814041 GGCCAGGGAGGAGAGGCT 62.814 72.222 0.00 0.00 46.23 4.58
1193 2263 0.463474 GTCGTAGCCGTAGAGGAGGT 60.463 60.000 0.00 0.00 45.00 3.85
1330 2406 2.538437 CTCGAGAAGGAAGCAGTCATG 58.462 52.381 6.58 0.00 0.00 3.07
1372 2448 3.187700 GCGGATACTGAACAGAAACGAT 58.812 45.455 8.87 0.00 0.00 3.73
1485 2585 0.745845 GTCGGTACTCGCCAGTAGGA 60.746 60.000 0.00 0.00 35.67 2.94
1804 2976 3.466836 TCCAGATATTAACGCTTGCTGG 58.533 45.455 0.00 0.00 42.04 4.85
2029 3222 3.240134 GACCAAGGCCTCTGCGACA 62.240 63.158 5.23 0.00 38.85 4.35
2146 3339 0.942252 GTCGTTCAGAACCACAACCC 59.058 55.000 7.76 0.00 0.00 4.11
2703 4153 9.736023 CTGCTTATCAATACAGGTTTAATTTCC 57.264 33.333 0.00 0.00 0.00 3.13
2732 4182 3.182152 AGCCTGACCACAATAACCTACT 58.818 45.455 0.00 0.00 0.00 2.57
2771 4221 4.159693 GGCAGTTACAGAATTTAAAGGGGG 59.840 45.833 0.00 0.00 0.00 5.40
2890 4341 1.960417 TGCGACCATGAAACAGTCAA 58.040 45.000 0.00 0.00 40.50 3.18
2992 4446 7.665690 TCAATTGGCAACTATTTCAAAAGCTA 58.334 30.769 0.00 0.00 40.12 3.32
3030 4508 5.137551 TCTTCAGTTTAAAGGGAAAGGTGG 58.862 41.667 0.00 0.00 0.00 4.61
3076 4555 9.067986 GGATGACCTTTAAGAAAGAAGAAGAAA 57.932 33.333 0.47 0.00 41.02 2.52
3079 4558 7.663493 ACTGGATGACCTTTAAGAAAGAAGAAG 59.337 37.037 0.47 0.00 41.02 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.